Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023528.01.T01 | PHT44286.1 | 51.232 | 203 | 41 | 3 | 13 | 198 | 167 | 328 | 2.59E-52 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023528.01.T01 | A0A2G2WGA8 | 51.232 | 203 | 41 | 3 | 13 | 198 | 167 | 328 | 1.24e-52 | 182 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048595.01 | MsG0480023528.01 | 0.815252 | 1.016717e-51 | 6.973690e-49 |
| MsG0080048992.01 | MsG0480023528.01 | -0.844799 | 6.042860e-59 | 9.867987e-56 |
| MsG0080049018.01 | MsG0480023528.01 | -0.800418 | 1.455087e-48 | 6.771936e-46 |
| MsG0080049023.01 | MsG0480023528.01 | -0.871581 | 6.129561e-67 | 2.485591e-63 |
| MsG0080049133.01 | MsG0480023528.01 | -0.802032 | 6.799490e-49 | 3.296408e-46 |
| MsG0180000147.01 | MsG0480023528.01 | 0.807271 | 5.482870e-50 | 3.040737e-47 |
| MsG0180000148.01 | MsG0480023528.01 | 0.811627 | 6.368403e-51 | 3.961630e-48 |
| MsG0180000417.01 | MsG0480023528.01 | -0.812089 | 5.052248e-51 | 3.182156e-48 |
| MsG0180000459.01 | MsG0480023528.01 | -0.804123 | 2.512428e-49 | 1.284977e-46 |
| MsG0180000466.01 | MsG0480023528.01 | 0.823964 | 1.042802e-53 | 9.113816e-51 |
| MsG0180000551.01 | MsG0480023528.01 | 0.807281 | 5.457431e-50 | 3.027402e-47 |
| MsG0180000583.01 | MsG0480023528.01 | 0.804311 | 2.296298e-49 | 1.180096e-46 |
| MsG0180000719.01 | MsG0480023528.01 | -0.829540 | 4.861827e-55 | 4.990576e-52 |
| MsG0180001484.01 | MsG0480023528.01 | -0.800100 | 1.688354e-48 | 7.794219e-46 |
| MsG0180001615.01 | MsG0480023528.01 | -0.834194 | 3.451824e-56 | 4.065968e-53 |
| MsG0180002099.01 | MsG0480023528.01 | -0.804466 | 2.131805e-49 | 1.099907e-46 |
| MsG0180003351.01 | MsG0480023528.01 | -0.813516 | 2.460486e-51 | 1.610223e-48 |
| MsG0180003405.01 | MsG0480023528.01 | -0.805241 | 1.467644e-49 | 7.725375e-47 |
| MsG0180003605.01 | MsG0480023528.01 | -0.809379 | 1.947819e-50 | 1.141879e-47 |
| MsG0180003758.01 | MsG0480023528.01 | -0.805066 | 1.597216e-49 | 8.369893e-47 |
| MsG0180004124.01 | MsG0480023528.01 | -0.801637 | 8.197521e-49 | 3.934422e-46 |
| MsG0180004125.01 | MsG0480023528.01 | -0.805287 | 1.435982e-49 | 7.567576e-47 |
| MsG0180004773.01 | MsG0480023528.01 | -0.850029 | 2.211234e-60 | 4.273945e-57 |
| MsG0180005272.01 | MsG0480023528.01 | 0.814731 | 1.326672e-51 | 8.972648e-49 |
| MsG0180006227.01 | MsG0480023528.01 | -0.830798 | 2.396968e-55 | 2.552314e-52 |
| MsG0280006381.01 | MsG0480023528.01 | -0.801557 | 8.510467e-49 | 4.076488e-46 |
| MsG0280006417.01 | MsG0480023528.01 | 0.812996 | 3.200787e-51 | 2.065300e-48 |
| MsG0280011165.01 | MsG0480023528.01 | 0.811069 | 8.417181e-51 | 5.159928e-48 |
| MsG0280011193.01 | MsG0480023528.01 | 0.802925 | 4.451283e-49 | 2.207674e-46 |
| MsG0280011203.01 | MsG0480023528.01 | 0.804344 | 2.260167e-49 | 1.162537e-46 |
| MsG0280011238.01 | MsG0480023528.01 | 0.807873 | 4.085587e-50 | 2.301434e-47 |
| MsG0280011281.01 | MsG0480023528.01 | -0.802297 | 5.998792e-49 | 2.928075e-46 |
| MsG0380014639.01 | MsG0480023528.01 | -0.846460 | 2.141927e-59 | 3.689795e-56 |
| MsG0380014642.01 | MsG0480023528.01 | -0.817132 | 3.865030e-52 | 2.791172e-49 |
| MsG0380014735.01 | MsG0480023528.01 | -0.841876 | 3.641805e-58 | 5.424851e-55 |
| MsG0380014890.01 | MsG0480023528.01 | -0.803488 | 3.403468e-49 | 1.712546e-46 |
| MsG0480019046.01 | MsG0480023528.01 | -0.832271 | 1.039459e-55 | 1.155942e-52 |
| MsG0480019217.01 | MsG0480023528.01 | 0.850906 | 1.254161e-60 | 2.494618e-57 |
| MsG0480020550.01 | MsG0480023528.01 | -0.800940 | 1.138687e-48 | 5.370140e-46 |
| MsG0480020838.01 | MsG0480023528.01 | -0.820531 | 6.529532e-53 | 5.179760e-50 |
| MsG0480021151.01 | MsG0480023528.01 | -0.818254 | 2.157464e-52 | 1.606682e-49 |
| MsG0480021327.01 | MsG0480023528.01 | -0.800186 | 1.621982e-48 | 7.504089e-46 |
| MsG0480021563.01 | MsG0480023528.01 | -0.800720 | 1.262560e-48 | 5.920808e-46 |
| MsG0480022383.01 | MsG0480023528.01 | 0.805593 | 1.238399e-49 | 6.577910e-47 |
| MsG0480022655.01 | MsG0480023528.01 | 0.807526 | 4.841707e-50 | 2.702968e-47 |
| MsG0480022840.01 | MsG0480023528.01 | 0.804879 | 1.747769e-49 | 9.115639e-47 |
| MsG0480022935.01 | MsG0480023528.01 | -0.837753 | 4.315566e-57 | 5.661118e-54 |
| MsG0480023107.01 | MsG0480023528.01 | 0.806112 | 9.633668e-50 | 5.185634e-47 |
| MsG0480023152.01 | MsG0480023528.01 | -0.819264 | 1.272327e-52 | 9.743546e-50 |
| MsG0480023267.01 | MsG0480023528.01 | 0.812765 | 3.594943e-51 | 2.305453e-48 |
| MsG0480023303.01 | MsG0480023528.01 | 0.824999 | 5.953275e-54 | 5.359238e-51 |
| MsG0480023528.01 | MsG0480023529.01 | 0.889376 | 2.561286e-73 | 2.061216e-69 |
| MsG0480023528.01 | MsG0480023577.01 | -0.836115 | 1.130318e-56 | 1.410730e-53 |
| MsG0480023528.01 | MsG0480023695.01 | -0.812267 | 4.621092e-51 | 2.924746e-48 |
| MsG0480023528.01 | MsG0580024398.01 | 0.800365 | 1.491569e-48 | 6.932415e-46 |
| MsG0480023528.01 | MsG0580024442.01 | -0.806533 | 7.854575e-50 | 4.273613e-47 |
| MsG0480023528.01 | MsG0580024493.01 | -0.803318 | 3.691021e-49 | 1.849075e-46 |
| MsG0480023528.01 | MsG0580024768.01 | -0.821407 | 4.103980e-53 | 3.335914e-50 |
| MsG0480023528.01 | MsG0580026362.01 | -0.819392 | 1.189625e-52 | 9.142350e-50 |
| MsG0480023528.01 | MsG0580027646.01 | 0.809375 | 1.952094e-50 | 1.144238e-47 |
| MsG0480023528.01 | MsG0580029218.01 | 0.819431 | 1.165580e-52 | 8.967731e-50 |
| MsG0480023528.01 | MsG0580030179.01 | 0.801665 | 8.087223e-49 | 3.884317e-46 |
| MsG0480023528.01 | MsG0680031204.01 | -0.810707 | 1.008031e-50 | 6.120394e-48 |
| MsG0480023528.01 | MsG0680035584.01 | -0.817042 | 4.047329e-52 | 2.915778e-49 |
| MsG0480023528.01 | MsG0780036661.01 | 0.802994 | 4.306473e-49 | 2.139509e-46 |
| MsG0480023528.01 | MsG0780037458.01 | -0.846677 | 1.868411e-59 | 3.241292e-56 |
| MsG0480023528.01 | MsG0780038030.01 | -0.844103 | 9.302336e-59 | 1.486199e-55 |
| MsG0480023528.01 | MsG0780038047.01 | -0.806950 | 6.411394e-50 | 3.526056e-47 |
| MsG0480023528.01 | MsG0780038108.01 | -0.838362 | 3.009237e-57 | 4.021122e-54 |
| MsG0480023528.01 | MsG0780038263.01 | -0.820686 | 6.017637e-53 | 4.793966e-50 |
| MsG0480023528.01 | MsG0780038573.01 | -0.809668 | 1.688350e-50 | 9.974122e-48 |
| MsG0480023528.01 | MsG0780038860.01 | 0.802665 | 5.037863e-49 | 2.482008e-46 |
| MsG0480023528.01 | MsG0780039287.01 | -0.818871 | 1.563559e-52 | 1.184485e-49 |
| MsG0480023528.01 | MsG0780039401.01 | -0.801032 | 1.090476e-48 | 5.154912e-46 |
| MsG0480023528.01 | MsG0780039838.01 | -0.826590 | 2.495044e-54 | 2.349961e-51 |
| MsG0480023528.01 | MsG0780039839.01 | -0.851707 | 7.449875e-61 | 1.520887e-57 |
| MsG0480023528.01 | MsG0780039969.01 | 0.806855 | 6.717162e-50 | 3.685232e-47 |
| MsG0480023528.01 | MsG0780040321.01 | -0.816671 | 4.903971e-52 | 3.497081e-49 |
| MsG0480023528.01 | MsG0780041121.01 | -0.803350 | 3.635418e-49 | 1.822670e-46 |
| MsG0480023528.01 | MsG0880042591.01 | 0.821635 | 3.636258e-53 | 2.974610e-50 |
| MsG0480023528.01 | MsG0880043550.01 | 0.830094 | 3.563751e-55 | 3.717318e-52 |
| MsG0480023528.01 | MsG0880044317.01 | -0.803057 | 4.179286e-49 | 2.079670e-46 |
| MsG0480023528.01 | MsG0880044968.01 | -0.826899 | 2.105746e-54 | 2.001182e-51 |
| MsG0480023528.01 | MsG0880045369.01 | -0.825551 | 4.406463e-54 | 4.029321e-51 |
| MsG0480023528.01 | MsG0880045385.01 | -0.833179 | 6.188803e-56 | 7.072134e-53 |
| MsG0480023528.01 | MsG0880045400.01 | -0.812453 | 4.206604e-51 | 2.675919e-48 |
| MsG0480023528.01 | MsG0880045761.01 | -0.823216 | 1.560826e-53 | 1.335504e-50 |
| MsG0480023528.01 | MsG0880045968.01 | -0.804173 | 2.452508e-49 | 1.255940e-46 |
| MsG0480023528.01 | MsG0880045991.01 | 0.823639 | 1.242701e-53 | 1.076162e-50 |
| MsG0480023528.01 | MsG0880046010.01 | -0.848470 | 6.006555e-60 | 1.103562e-56 |
| MsG0480023528.01 | MsG0880046189.01 | -0.818545 | 1.853668e-52 | 1.391669e-49 |
| MsG0480023528.01 | MsG0880046630.01 | -0.810649 | 1.037563e-50 | 6.289726e-48 |
| MsG0480023528.01 | MsG0880047406.01 | -0.809093 | 2.243378e-50 | 1.305098e-47 |
| MsG0380015828.01 | MsG0480023528.01 | -0.842788 | 2.088003e-58 | 3.200404e-55 |
| MsG0380016176.01 | MsG0480023528.01 | 0.802182 | 6.333630e-49 | 3.082278e-46 |
| MsG0380016492.01 | MsG0480023528.01 | -0.807528 | 4.837444e-50 | 2.700685e-47 |
| MsG0380016935.01 | MsG0480023528.01 | -0.805769 | 1.137539e-49 | 6.069887e-47 |
| MsG0380017405.01 | MsG0480023528.01 | -0.813199 | 2.889018e-51 | 1.874291e-48 |
| MsG0380017812.01 | MsG0480023528.01 | -0.840952 | 6.377048e-58 | 9.229387e-55 |
| MsG0380017928.01 | MsG0480023528.01 | -0.817068 | 3.994926e-52 | 2.879982e-49 |
| MsG0380018006.01 | MsG0480023528.01 | 0.811698 | 6.148079e-51 | 3.831650e-48 |
| MsG0380018035.01 | MsG0480023528.01 | -0.809448 | 1.882717e-50 | 1.105685e-47 |
| MsG0480018201.01 | MsG0480023528.01 | -0.814847 | 1.250506e-51 | 8.483890e-49 |
| MsG0480018202.01 | MsG0480023528.01 | -0.808253 | 3.392046e-50 | 1.930153e-47 |
| MsG0480018203.01 | MsG0480023528.01 | -0.806005 | 1.014987e-49 | 5.448781e-47 |
| MsG0280006534.01 | MsG0480023528.01 | -0.823225 | 1.553048e-53 | 1.329176e-50 |
| MsG0280007163.01 | MsG0480023528.01 | 0.806277 | 8.893286e-50 | 4.807387e-47 |
| MsG0280007216.01 | MsG0480023528.01 | 0.802576 | 5.253543e-49 | 2.582465e-46 |
| MsG0280007653.01 | MsG0480023528.01 | -0.815927 | 7.192217e-52 | 5.025409e-49 |
| MsG0280009079.01 | MsG0480023528.01 | -0.811145 | 8.103849e-51 | 4.977705e-48 |
| MsG0280009094.01 | MsG0480023528.01 | -0.807513 | 4.871584e-50 | 2.718810e-47 |
| MsG0280009432.01 | MsG0480023528.01 | 0.800513 | 1.391504e-48 | 6.491495e-46 |
| MsG0280009742.01 | MsG0480023528.01 | -0.801217 | 9.990843e-49 | 4.744771e-46 |
| MsG0280010019.01 | MsG0480023528.01 | 0.808481 | 3.032049e-50 | 1.735672e-47 |
| MsG0280010047.01 | MsG0480023528.01 | 0.835774 | 1.379843e-56 | 1.704362e-53 |
| MsG0280010240.01 | MsG0480023528.01 | 0.813817 | 2.112300e-51 | 1.393685e-48 |
| MsG0280010455.01 | MsG0480023528.01 | -0.844345 | 8.009210e-59 | 1.289217e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023528.01.T01 | MTR_8g095220 | 43.775 | 249 | 36 | 4 | 13 | 198 | 155 | 362 | 9.16e-49 | 164 |
| MsG0480023528.01.T01 | MTR_8g095220 | 60.417 | 144 | 16 | 1 | 13 | 156 | 155 | 257 | 2.80e-48 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023528.01.T01 | AT5G63620 | 50.000 | 144 | 31 | 1 | 13 | 156 | 157 | 259 | 6.98e-38 | 133 |
| MsG0480023528.01.T01 | AT5G63620 | 50.000 | 144 | 31 | 1 | 13 | 156 | 157 | 259 | 2.46e-37 | 134 |
| MsG0480023528.01.T01 | AT5G63620 | 50.000 | 144 | 31 | 1 | 13 | 156 | 157 | 259 | 2.73e-37 | 134 |
Find 42 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATTAAGCTTGTCTATA+TGG | 0.216639 | 4:+86485462 | None:intergenic |
| GGTGATACTGTTGCTGTTAT+TGG | 0.219498 | 4:-86485136 | MsG0480023528.01.T01:CDS |
| CTGGCACAAGCTGGTTCTTT+AGG | 0.246946 | 4:-86484469 | MsG0480023528.01.T01:CDS |
| TCGAGTTTCACCATCGTATA+AGG | 0.300970 | 4:+86485577 | None:intergenic |
| ACTGTTGCTGTTATTGGAAC+TGG | 0.304388 | 4:-86485130 | MsG0480023528.01.T01:CDS |
| TATACCGAGTCTGCAATTCT+AGG | 0.324055 | 4:-86485214 | MsG0480023528.01.T01:CDS |
| TCGGTATATGGCATTGAGTT+TGG | 0.337585 | 4:+86485229 | None:intergenic |
| GAAATTTGTATCAGCTGAAT+AGG | 0.341589 | 4:+86485391 | None:intergenic |
| AGAATTGCAGACTCGGTATA+TGG | 0.391325 | 4:+86485217 | None:intergenic |
| CTGTTGCTGTTATTGGAACT+GGG | 0.417859 | 4:-86485129 | MsG0480023528.01.T01:CDS |
| TAAATTAAGCTTGTCTATAT+GGG | 0.421177 | 4:+86485463 | None:intergenic |
| TGAATCAAGTAAGAAGTAAG+AGG | 0.421869 | 4:+86485529 | None:intergenic |
| GGAGGAAAAGCAGTGATGAT+TGG | 0.449002 | 4:-86484493 | MsG0480023528.01.T01:CDS |
| TTTGCTTATAACCGCGCAAA+AGG | 0.453633 | 4:-86485602 | MsG0480023528.01.T01:CDS |
| CGACTGTTTCTTCGAGGAAG+TGG | 0.460944 | 4:-86485557 | MsG0480023528.01.T01:CDS |
| GCTGTCTACAAACGGTATGC+AGG | 0.462178 | 4:-86485651 | MsG0480023528.01.T01:CDS |
| TACAATCATTTCACATGTAT+CGG | 0.496233 | 4:+86485499 | None:intergenic |
| CATGCAGCCGAAGTGCGCCC+TGG | 0.499244 | 4:-86485157 | MsG0480023528.01.T01:CDS |
| AGCTGGTTCTTTAGGAGAGG+TGG | 0.503154 | 4:-86484461 | MsG0480023528.01.T01:CDS |
| TGTCAACTGAATTATGGTCT+CGG | 0.516519 | 4:-86485681 | None:intergenic |
| AAATAGACTTGTTCGCAGAA+AGG | 0.523418 | 4:-86484434 | None:intergenic |
| GAAACTCGACTGTTTCTTCG+AGG | 0.525121 | 4:-86485563 | MsG0480023528.01.T01:CDS |
| GACTATGTAAACACATACTT+AGG | 0.531324 | 4:+86485438 | None:intergenic |
| GTGTTTATGCTGTCTACAAA+CGG | 0.542164 | 4:-86485659 | MsG0480023528.01.T01:CDS |
| GCAAAAGGAACCTTATACGA+TGG | 0.560670 | 4:-86485587 | MsG0480023528.01.T01:CDS |
| TGCACACAAAGTGTGAAAGA+TGG | 0.567900 | 4:-86484514 | MsG0480023528.01.T01:CDS |
| CTGTCTACAAACGGTATGCA+GGG | 0.578608 | 4:-86485650 | MsG0480023528.01.T01:CDS |
| AGTATCACCAGGGCGCACTT+CGG | 0.593810 | 4:+86485150 | None:intergenic |
| ACAAGCTGGTTCTTTAGGAG+AGG | 0.597825 | 4:-86484464 | MsG0480023528.01.T01:CDS |
| TGTTGCTGTTATTGGAACTG+GGG | 0.602671 | 4:-86485128 | MsG0480023528.01.T01:CDS |
| ACATCCTAGAATTGCAGACT+CGG | 0.607209 | 4:+86485210 | None:intergenic |
| TGTGCCAGCAAATGCATTGG+CGG | 0.610816 | 4:-86485257 | MsG0480023528.01.T01:intron |
| ATGATTGGACTGGCACAAGC+TGG | 0.611907 | 4:-86484478 | MsG0480023528.01.T01:CDS |
| GTTGCTGTTATTGGAACTGG+GGG | 0.615280 | 4:-86485127 | MsG0480023528.01.T01:CDS |
| ATAACAGCAACAGTATCACC+AGG | 0.620053 | 4:+86485139 | None:intergenic |
| AAGCTTCGCACAGATCATCA+TGG | 0.622065 | 4:+86485627 | None:intergenic |
| AAAAGCAGTGATGATTGGAC+TGG | 0.624735 | 4:-86484488 | MsG0480023528.01.T01:CDS |
| GAATCAAGTAAGAAGTAAGA+GGG | 0.626857 | 4:+86485530 | None:intergenic |
| TGTTGTGCCAGCAAATGCAT+TGG | 0.658264 | 4:-86485260 | MsG0480023528.01.T01:intron |
| TGTGCACTGAGAAATGTCTG+TGG | 0.672742 | 4:+86484531 | None:intergenic |
| ACACAAAGTGTGAAAGATGG+AGG | 0.689218 | 4:-86484511 | MsG0480023528.01.T01:CDS |
| TAACAGCAACAGTATCACCA+GGG | 0.751466 | 4:+86485140 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATTGGCAAATTTAT+AGG | - | Chr4:86484775-86484794 | MsG0480023528.01.T01:intron | 15.0% |
| !! | ATAAATTAAGCTTGTCTATA+TGG | + | Chr4:86484644-86484663 | None:intergenic | 20.0% |
| !! | ATTGGAATACTGAAAATAAT+TGG | - | Chr4:86484763-86484782 | MsG0480023528.01.T01:intron | 20.0% |
| !! | GAGAGAAAAAACATAAATAA+AGG | + | Chr4:86485493-86485512 | None:intergenic | 20.0% |
| !! | TAAATTAAGCTTGTCTATAT+GGG | + | Chr4:86484643-86484662 | None:intergenic | 20.0% |
| !! | TTTCAGTATTCCAATTATAA+AGG | + | Chr4:86484758-86484777 | None:intergenic | 20.0% |
| !!! | ATATACAAGTATCTTTTCAA+TGG | + | Chr4:86485352-86485371 | None:intergenic | 20.0% |
| !!! | TATACAAGTATCTTTTCAAT+GGG | + | Chr4:86485351-86485370 | None:intergenic | 20.0% |
| ! | GAAACAGCAAAAATAGAAAA+AGG | + | Chr4:86485075-86485094 | None:intergenic | 25.0% |
| ! | TACAATCATTTCACATGTAT+CGG | + | Chr4:86484607-86484626 | None:intergenic | 25.0% |
| ACCGATATACATGTATAGTA+TGG | - | Chr4:86484801-86484820 | MsG0480023528.01.T01:intron | 30.0% | |
| AGAGTAGACTCCTTTATAAT+TGG | - | Chr4:86484745-86484764 | MsG0480023528.01.T01:intron | 30.0% | |
| ATATACATGTATAGTATGGG+AGG | - | Chr4:86484805-86484824 | MsG0480023528.01.T01:intron | 30.0% | |
| CCCATACTATACATGTATAT+CGG | + | Chr4:86484805-86484824 | None:intergenic | 30.0% | |
| CCGATATACATGTATAGTAT+GGG | - | Chr4:86484802-86484821 | MsG0480023528.01.T01:intron | 30.0% | |
| GAAATTTGTATCAGCTGAAT+AGG | + | Chr4:86484715-86484734 | None:intergenic | 30.0% | |
| GAAGCGTGATAAAGTTAAAA+TGG | + | Chr4:86485203-86485222 | None:intergenic | 30.0% | |
| GAATCAAGTAAGAAGTAAGA+GGG | + | Chr4:86484576-86484595 | None:intergenic | 30.0% | |
| GACTATGTAAACACATACTT+AGG | + | Chr4:86484668-86484687 | None:intergenic | 30.0% | |
| GCAAAAATAGAAAAAGGAAG+TGG | + | Chr4:86485069-86485088 | None:intergenic | 30.0% | |
| TATACATGTATAGTATGGGA+GGG | - | Chr4:86484806-86484825 | MsG0480023528.01.T01:intron | 30.0% | |
| TGAATCAAGTAAGAAGTAAG+AGG | + | Chr4:86484577-86484596 | None:intergenic | 30.0% | |
| TGCAACTCACACAATAAATT+CGG | - | Chr4:86485314-86485333 | MsG0480023528.01.T01:intron | 30.0% | |
| TTCGATAATGCTTGCTTAAA+TGG | - | Chr4:86485092-86485111 | MsG0480023528.01.T01:intron | 30.0% | |
| ! | TATAATTGCTGTTGATGTTC+AGG | - | Chr4:86485262-86485281 | MsG0480023528.01.T01:intron | 30.0% |
| ATCAACAGCAATTATATCCG+AGG | + | Chr4:86485258-86485277 | None:intergenic | 35.0% | |
| GGTAACTAATCATTGTCAAG+TGG | - | Chr4:86485010-86485029 | MsG0480023528.01.T01:intron | 35.0% | |
| GTGTTTATGCTGTCTACAAA+CGG | - | Chr4:86484444-86484463 | MsG0480023528.01.T01:CDS | 35.0% | |
| GTTCTGGCAATTAAACAATG+AGG | + | Chr4:86485389-86485408 | None:intergenic | 35.0% | |
| TCACACAATAAATTCGGCTA+AGG | - | Chr4:86485320-86485339 | MsG0480023528.01.T01:intron | 35.0% | |
| ! | AGTCATAGTTTTCTCTGCTA+TGG | - | Chr4:86484684-86484703 | MsG0480023528.01.T01:intron | 35.0% |
| ! | TTTTACTGCTTATGGTGCAA+TGG | - | Chr4:86484921-86484940 | MsG0480023528.01.T01:intron | 35.0% |
| ! | TTTTCATATATCCGAGCAGT+AGG | - | Chr4:86485155-86485174 | MsG0480023528.01.T01:CDS | 35.0% |
| !!! | GTTTTTTCTCTCTCAACTTC+AGG | - | Chr4:86485501-86485520 | MsG0480023528.01.T01:CDS | 35.0% |
| !!! | TGTGCTGTTTTTACTGCTTA+TGG | - | Chr4:86484913-86484932 | MsG0480023528.01.T01:intron | 35.0% |
| AAAAGCAGTGATGATTGGAC+TGG | - | Chr4:86485615-86485634 | MsG0480023528.01.T01:CDS | 40.0% | |
| ACACAAAGTGTGAAAGATGG+AGG | - | Chr4:86485592-86485611 | MsG0480023528.01.T01:CDS | 40.0% | |
| ACATCCTAGAATTGCAGACT+CGG | + | Chr4:86484896-86484915 | None:intergenic | 40.0% | |
| AGCTAGAGAAAGCAAACACT+TGG | - | Chr4:86485291-86485310 | MsG0480023528.01.T01:intron | 40.0% | |
| ATAACAGCAACAGTATCACC+AGG | + | Chr4:86484967-86484986 | None:intergenic | 40.0% | |
| CTCTCAACTTCAGGAAATAC+TGG | - | Chr4:86485510-86485529 | MsG0480023528.01.T01:CDS | 40.0% | |
| GCAAAAGGAACCTTATACGA+TGG | - | Chr4:86484516-86484535 | MsG0480023528.01.T01:CDS | 40.0% | |
| TAACAGCAACAGTATCACCA+GGG | + | Chr4:86484966-86484985 | None:intergenic | 40.0% | |
| TATACCGAGTCTGCAATTCT+AGG | - | Chr4:86484889-86484908 | MsG0480023528.01.T01:intron | 40.0% | |
| TCAACTTCAGGAAATACTGG+TGG | - | Chr4:86485513-86485532 | MsG0480023528.01.T01:CDS | 40.0% | |
| TCGAGTTTCACCATCGTATA+AGG | + | Chr4:86484529-86484548 | None:intergenic | 40.0% | |
| TGCACACAAAGTGTGAAAGA+TGG | - | Chr4:86485589-86485608 | MsG0480023528.01.T01:CDS | 40.0% | |
| TGTTAGGAGCTAATAGACAG+AGG | + | Chr4:86485426-86485445 | None:intergenic | 40.0% | |
| TTATGCACGATAGTGTGAGT+GGG | + | Chr4:86485452-86485471 | None:intergenic | 40.0% | |
| TTCAGGAAATACTGGTGGAA+AGG | - | Chr4:86485518-86485537 | MsG0480023528.01.T01:CDS | 40.0% | |
| TTTATGCACGATAGTGTGAG+TGG | + | Chr4:86485453-86485472 | None:intergenic | 40.0% | |
| TTTGCTTATAACCGCGCAAA+AGG | - | Chr4:86484501-86484520 | MsG0480023528.01.T01:CDS | 40.0% | |
| ! | ACTGTTGCTGTTATTGGAAC+TGG | - | Chr4:86484973-86484992 | MsG0480023528.01.T01:intron | 40.0% |
| ! | AGAATTGCAGACTCGGTATA+TGG | + | Chr4:86484889-86484908 | None:intergenic | 40.0% |
| ! | ATGTTGCTGTTGAAGCCTTA+GGG | - | Chr4:86485546-86485565 | MsG0480023528.01.T01:CDS | 40.0% |
| ! | CTGTTGCTGTTATTGGAACT+GGG | - | Chr4:86484974-86484993 | MsG0480023528.01.T01:intron | 40.0% |
| ! | GGTGATACTGTTGCTGTTAT+TGG | - | Chr4:86484967-86484986 | MsG0480023528.01.T01:intron | 40.0% |
| ! | TCGGTATATGGCATTGAGTT+TGG | + | Chr4:86484877-86484896 | None:intergenic | 40.0% |
| ! | TGTTGCTGTTATTGGAACTG+GGG | - | Chr4:86484975-86484994 | MsG0480023528.01.T01:intron | 40.0% |
| AAATGTCTGTGGTCTCCCTA+AGG | + | Chr4:86485564-86485583 | None:intergenic | 45.0% | |
| AAGCTTCGCACAGATCATCA+TGG | + | Chr4:86484479-86484498 | None:intergenic | 45.0% | |
| AATACCGCCAATGCATTTGC+TGG | + | Chr4:86484853-86484872 | None:intergenic | 45.0% | |
| CTGTCTACAAACGGTATGCA+GGG | - | Chr4:86484453-86484472 | MsG0480023528.01.T01:CDS | 45.0% | |
| GGAGGAAAAGCAGTGATGAT+TGG | - | Chr4:86485610-86485629 | MsG0480023528.01.T01:CDS | 45.0% | |
| TAGTGTGAGTGGGTGATGTT+AGG | + | Chr4:86485442-86485461 | None:intergenic | 45.0% | |
| TCTAGCTATCTGCAGACAAC+TGG | + | Chr4:86485225-86485244 | None:intergenic | 45.0% | |
| TGCCAGAACTCTATCTTGTG+CGG | - | Chr4:86485400-86485419 | MsG0480023528.01.T01:CDS | 45.0% | |
| TGTGCACTGAGAAATGTCTG+TGG | + | Chr4:86485575-86485594 | None:intergenic | 45.0% | |
| TGTTGTGCCAGCAAATGCAT+TGG | - | Chr4:86484843-86484862 | MsG0480023528.01.T01:intron | 45.0% | |
| ! | ACAAGCTGGTTCTTTAGGAG+AGG | - | Chr4:86485639-86485658 | MsG0480023528.01.T01:CDS | 45.0% |
| ! | CGTATAAGGTTCCTTTTGCG+CGG | + | Chr4:86484515-86484534 | None:intergenic | 45.0% |
| ! | CTGCAGATAGCTAGAGCATT+TGG | - | Chr4:86485230-86485249 | MsG0480023528.01.T01:CDS | 45.0% |
| ! | GAAACTCGACTGTTTCTTCG+AGG | - | Chr4:86484540-86484559 | MsG0480023528.01.T01:intron | 45.0% |
| ! | GATGTTGCTGTTGAAGCCTT+AGG | - | Chr4:86485545-86485564 | MsG0480023528.01.T01:CDS | 45.0% |
| ! | GTTGCTGTTATTGGAACTGG+GGG | - | Chr4:86484976-86484995 | MsG0480023528.01.T01:intron | 45.0% |
| GCTGTCTACAAACGGTATGC+AGG | - | Chr4:86484452-86484471 | MsG0480023528.01.T01:CDS | 50.0% | |
| GTTGATCAGAGCCTACTGCT+CGG | + | Chr4:86485169-86485188 | None:intergenic | 50.0% | |
| TGTGCCAGCAAATGCATTGG+CGG | - | Chr4:86484846-86484865 | MsG0480023528.01.T01:intron | 50.0% | |
| ! | AGCTGGTTCTTTAGGAGAGG+TGG | - | Chr4:86485642-86485661 | MsG0480023528.01.T01:CDS | 50.0% |
| ! | CGACTGTTTCTTCGAGGAAG+TGG | - | Chr4:86484546-86484565 | MsG0480023528.01.T01:intron | 50.0% |
| ! | CTGGCACAAGCTGGTTCTTT+AGG | - | Chr4:86485634-86485653 | MsG0480023528.01.T01:CDS | 50.0% |
| ! | GTTATTGGAACTGGGGGTGT+TGG | - | Chr4:86484982-86485001 | MsG0480023528.01.T01:intron | 50.0% |
| !! | AGCTAGAGCATTTGGTGCCT+CGG | - | Chr4:86485238-86485257 | MsG0480023528.01.T01:CDS | 50.0% |
| !! | ATGATTGGACTGGCACAAGC+TGG | - | Chr4:86485625-86485644 | MsG0480023528.01.T01:CDS | 50.0% |
| AGTATCACCAGGGCGCACTT+CGG | + | Chr4:86484956-86484975 | None:intergenic | 55.0% | |
| GGCCGCACAAGATAGAGTTC+TGG | + | Chr4:86485405-86485424 | None:intergenic | 55.0% | |
| !! | GAACTGGGGGTGTTGGTTCT+AGG | - | Chr4:86484989-86485008 | MsG0480023528.01.T01:intron | 55.0% |
| CATGCAGCCGAAGTGCGCCC+TGG | - | Chr4:86484946-86484965 | MsG0480023528.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 86484435 | 86485690 | 86484435 | ID=MsG0480023528.01;Name=MsG0480023528.01 |
| Chr4 | mRNA | 86484435 | 86485690 | 86484435 | ID=MsG0480023528.01.T01;Parent=MsG0480023528.01;Name=MsG0480023528.01.T01;_AED=0.41;_eAED=0.48;_QI=0|0|0|1|0.5|0|3|0|198 |
| Chr4 | exon | 86485378 | 86485690 | 86485378 | ID=MsG0480023528.01.T01:exon:3094;Parent=MsG0480023528.01.T01 |
| Chr4 | exon | 86485115 | 86485271 | 86485115 | ID=MsG0480023528.01.T01:exon:3093;Parent=MsG0480023528.01.T01 |
| Chr4 | exon | 86484435 | 86484558 | 86484435 | ID=MsG0480023528.01.T01:exon:3092;Parent=MsG0480023528.01.T01 |
| Chr4 | CDS | 86485378 | 86485690 | 86485378 | ID=MsG0480023528.01.T01:cds;Parent=MsG0480023528.01.T01 |
| Chr4 | CDS | 86485115 | 86485271 | 86485115 | ID=MsG0480023528.01.T01:cds;Parent=MsG0480023528.01.T01 |
| Chr4 | CDS | 86484435 | 86484558 | 86484435 | ID=MsG0480023528.01.T01:cds;Parent=MsG0480023528.01.T01 |
| Gene Sequence |
| Protein sequence |
