AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011165.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011165.01.T01 MTR_2g099950 98.077 572 11 0 1 572 1 572 0.0 1164
MsG0280011165.01.T01 MTR_2g099950 98.625 509 7 0 64 572 1 509 0.0 1041
MsG0280011165.01.T01 MTR_8g017410 77.565 575 121 4 3 572 4 575 0.0 929
MsG0280011165.01.T01 MTR_8g017410 79.377 514 102 2 61 572 18 529 0.0 859
MsG0280011165.01.T01 MTR_5g066380 62.976 578 192 10 8 572 6 574 0.0 741
MsG0280011165.01.T01 MTR_8g017410 75.735 408 91 4 3 405 4 408 0.0 641
MsG0280011165.01.T01 MTR_1g059700 55.935 556 231 8 23 572 21 568 0.0 629
MsG0280011165.01.T01 MTR_7g105050 55.676 555 234 7 23 571 25 573 0.0 622
MsG0280011165.01.T01 MTR_1g015910 54.682 534 232 5 44 571 42 571 0.0 602
MsG0280011165.01.T01 MTR_1g015970 53.125 544 245 5 34 571 6 545 0.0 595
MsG0280011165.01.T01 MTR_1g015910 54.475 514 227 4 61 571 19 528 0.0 576
MsG0280011165.01.T01 MTR_1g015980 48.913 552 264 10 33 571 5 551 0.0 537
MsG0280011165.01.T01 MTR_4g101630 47.368 532 263 9 48 571 112 634 2.73e-159 469
MsG0280011165.01.T01 MTR_4g101630 47.093 516 259 8 61 571 16 522 3.33e-154 452
MsG0280011165.01.T01 MTR_3g008530 45.558 529 274 8 48 571 104 623 5.20e-154 456
MsG0280011165.01.T01 MTR_1g015940 46.847 444 206 5 74 514 54 470 1.35e-139 414
MsG0280011165.01.T01 MTR_1g015920 32.692 104 65 2 252 351 4 106 3.07e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011165.01.T01 AT3G13790 64.602 565 188 7 17 572 20 581 0.0 751
MsG0280011165.01.T01 AT3G13790 64.261 568 188 8 17 572 20 584 0.0 746
MsG0280011165.01.T01 AT3G13790 65.184 517 169 6 64 572 1 514 0.0 691
MsG0280011165.01.T01 AT3G13790 65.184 517 169 6 64 572 1 514 0.0 691
MsG0280011165.01.T01 AT3G13790 65.184 517 169 6 64 572 1 514 0.0 691
MsG0280011165.01.T01 AT1G55120 57.388 582 221 8 4 572 7 574 0.0 682
MsG0280011165.01.T01 AT1G55120 59.579 522 199 6 61 572 15 534 0.0 645
MsG0280011165.01.T01 AT1G55120 59.501 521 199 6 62 572 17 535 0.0 644
MsG0280011165.01.T01 AT1G55120 59.273 523 201 6 60 572 39 559 0.0 644
MsG0280011165.01.T01 AT3G13784 55.208 576 233 10 3 569 9 568 0.0 641
MsG0280011165.01.T01 AT3G13784 54.922 579 233 11 3 569 9 571 0.0 636
MsG0280011165.01.T01 AT3G13784 54.922 579 233 11 3 569 9 571 0.0 635
MsG0280011165.01.T01 AT3G13784 57.336 518 207 8 61 569 6 518 0.0 608
MsG0280011165.01.T01 AT3G52600 53.368 579 248 8 6 568 9 581 0.0 595
MsG0280011165.01.T01 AT2G36190 53.559 562 239 8 23 568 27 582 0.0 585
MsG0280011165.01.T01 AT3G52600 55.086 521 218 6 61 568 10 527 0.0 565
MsG0280011165.01.T01 AT3G52600 55.019 518 217 6 64 568 1 515 0.0 560
MsG0280011165.01.T01 AT5G11920 49.533 535 254 9 48 572 17 545 5.07e-176 509
MsG0280011165.01.T01 AT5G11920 49.419 516 248 8 64 572 1 510 1.65e-167 486
MsG0280011165.01.T01 AT1G62660 47.201 536 266 11 48 572 106 635 4.85e-157 464
MsG0280011165.01.T01 AT1G12240 44.732 541 273 11 48 572 121 651 2.08e-151 450
MsG0280011165.01.T01 AT1G62660 46.731 520 263 10 61 572 24 537 1.73e-150 444
MsG0280011165.01.T01 AT1G62660 45.243 473 245 10 108 572 3 469 4.86e-127 381
MsG0280011165.01.T01 AT1G62660 45.243 473 245 10 108 572 3 469 4.86e-127 381
MsG0280011165.01.T01 AT5G11920 51.200 375 168 8 48 413 17 385 2.00e-124 373

Find 146 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCTTCTCTCTCATTTA+TGG 0.118372 2:-80412793 MsG0280011165.01.T01:CDS
AAATAAATGCAAGTTCATTT+AGG 0.163015 2:-80411609 MsG0280011165.01.T01:CDS
TCATTTGAAGTGAAAGATTT+TGG 0.181984 2:-80410401 MsG0280011165.01.T01:CDS
AAGAGAGTTAGCAATAAAAT+TGG 0.204427 2:+80412808 None:intergenic
TTGTTATATGCTTTCAATAA+TGG 0.210493 2:-80409469 MsG0280011165.01.T01:CDS
CAGATATCAACATAAGAATT+TGG 0.218589 2:-80410228 MsG0280011165.01.T01:CDS
AATTAGTATCACTACTTCTT+AGG 0.265234 2:+80409381 None:intergenic
CAATCCAAAAGGTGCTGTTT+GGG 0.272533 2:-80411911 MsG0280011165.01.T01:CDS
ACTGAATTAACACCAGTAAT+TGG 0.279878 2:+80410677 None:intergenic
ACCTTGGTGGGCCAATTGAC+TGG 0.297166 2:+80410722 None:intergenic
AATAAATGCAAGTTCATTTA+GGG 0.302444 2:-80411608 MsG0280011165.01.T01:CDS
AAACATGATCACTATTTGAT+TGG 0.304462 2:-80411310 MsG0280011165.01.T01:CDS
AATGGATTCTTATTTGATAC+TGG 0.309454 2:+80411406 None:intergenic
CATTCAGTGGTGGAGAGTTT+TGG 0.312021 2:-80409556 MsG0280011165.01.T01:CDS
ACATGTGCTTAAGGTTAGTT+TGG 0.312368 2:-80411341 MsG0280011165.01.T01:CDS
TTAGGGACCCAACTACTTCT+TGG 0.318590 2:-80411591 MsG0280011165.01.T01:CDS
AGACTATTCCAAGGGCTATC+TGG 0.325731 2:-80410811 MsG0280011165.01.T01:CDS
AGCTGAATGTAAAGGATGTT+TGG 0.327426 2:+80411465 None:intergenic
TTTCCCCAAACAGCACCTTT+TGG 0.327751 2:+80411907 None:intergenic
GGTGAATTGATTCCAATTAC+TGG 0.339584 2:-80410689 MsG0280011165.01.T01:CDS
CAAAAGGGTGCATCAGTAAA+AGG 0.341096 2:-80410329 MsG0280011165.01.T01:CDS
ACAATCCAAAAGGTGCTGTT+TGG 0.345736 2:-80411912 MsG0280011165.01.T01:CDS
GATGTCTTTGTTCCGGATAA+TGG 0.347597 2:-80411268 MsG0280011165.01.T01:CDS
TCTCAACCGTCAGATATAAA+AGG 0.347684 2:-80411814 MsG0280011165.01.T01:CDS
GGGTATTGGAGAGTATTAAT+TGG 0.349792 2:-80411556 MsG0280011165.01.T01:CDS
TGCTTATTATTGTTCACAAA+AGG 0.349820 2:+80409240 None:intergenic
GTATCAAGACCAATGGTTAA+TGG 0.350255 2:+80411388 None:intergenic
TGTTAAGGATGTCTTTGTTC+CGG 0.351247 2:-80411275 MsG0280011165.01.T01:CDS
GCTATCTGGCTTCATAAATC+AGG 0.355554 2:-80410797 MsG0280011165.01.T01:CDS
TATCCATTTGTCCAATAATT+CGG 0.361523 2:+80410373 None:intergenic
ATTCCTGTGTACAAAATTGC+TGG 0.362081 2:+80411751 None:intergenic
TTTGATACTGGAAAGAAATC+AGG 0.362726 2:+80411418 None:intergenic
GAGAATGATATGACCACATA+TGG 0.363306 2:-80410071 MsG0280011165.01.T01:CDS
AAGTGATAGGCAGTTCTATA+AGG 0.365296 2:+80412685 None:intergenic
ACTTCCAACCTCTCAAGAAT+TGG 0.373141 2:-80412666 MsG0280011165.01.T01:CDS
AAAGGTGGTGTTGGACCATT+TGG 0.375969 2:-80410311 MsG0280011165.01.T01:CDS
GGCTCAGCCACAATACTTCC+AGG 0.379324 2:-80411781 MsG0280011165.01.T01:CDS
TATCAAAGGATCTTGTGAAT+TGG 0.395856 2:-80411864 MsG0280011165.01.T01:CDS
GTGGTTTAATTGAATGAAGT+TGG 0.403508 2:+80412844 None:intergenic
CTGCACGTGCTTGCTTCTAA+AGG 0.407854 2:-80410287 MsG0280011165.01.T01:CDS
CAAGATCCTTTGATACTGAA+TGG 0.413406 2:+80411872 None:intergenic
AGTAGTGATACTAATTAAAC+AGG 0.415338 2:-80409374 MsG0280011165.01.T01:three_prime_UTR
GATATAAAAGGTTGTTGGTC+AGG 0.418374 2:-80411802 MsG0280011165.01.T01:CDS
AACATGGTGGGTAGCTTCAA+TGG 0.424077 2:+80412756 None:intergenic
TTTCCTAGCCAAGAAGTAGT+TGG 0.425634 2:+80411583 None:intergenic
TTACATTCAGCTGAAGGAAC+AGG 0.425951 2:-80411454 MsG0280011165.01.T01:CDS
TAGAAGAATCTTGTTGGGTT+GGG 0.427933 2:-80411164 MsG0280011165.01.T01:CDS
GAAGAATAGAAGAATCTTGT+TGG 0.428646 2:-80411170 MsG0280011165.01.T01:CDS
AGGCCGAATTATTGGACAAA+TGG 0.428825 2:-80410376 MsG0280011165.01.T01:CDS
AACATGATCACTATTTGATT+GGG 0.429903 2:-80411309 MsG0280011165.01.T01:CDS
TTCCTAGCCAAGAAGTAGTT+GGG 0.430481 2:+80411584 None:intergenic
ACCTCCCTTGATCACCTTGG+TGG 0.438479 2:+80410709 None:intergenic
CTTGAGAGGTTGGAAGTGAT+AGG 0.439207 2:+80412672 None:intergenic
TTTGTAGGACCAATGAGATA+TGG 0.447970 2:-80411961 MsG0280011165.01.T01:intron
AGATCACAAGATTGAATGCT+TGG 0.449911 2:-80409432 MsG0280011165.01.T01:CDS
TACATTAGCAATCCATGATA+AGG 0.451158 2:-80409494 MsG0280011165.01.T01:CDS
GGCTAGGAAAAGATGGGTAT+TGG 0.451915 2:-80411570 MsG0280011165.01.T01:CDS
TACGTATGAACCCAGTCAAT+TGG 0.452564 2:-80410733 MsG0280011165.01.T01:CDS
ACTTCTTGGCTAGGAAAAGA+TGG 0.457660 2:-80411577 MsG0280011165.01.T01:CDS
AAAATTGCTGGTTTGCCACC+TGG 0.460562 2:+80411763 None:intergenic
GCAACAGTAGGTTCCATCAA+TGG 0.461790 2:+80411637 None:intergenic
CCTTGGTGGGCCAATTGACT+GGG 0.462535 2:+80410723 None:intergenic
AATGTGTTGAGATATGATTA+TGG 0.466520 2:-80411229 MsG0280011165.01.T01:CDS
TTATCCTCAAATCCATTATC+CGG 0.468101 2:+80411256 None:intergenic
GCTTATTATTGTTCACAAAA+GGG 0.469856 2:+80409241 None:intergenic
GATGTCAAGAAAGGATGGTC+TGG 0.472931 2:-80411115 MsG0280011165.01.T01:CDS
TGATGTTAGACATGTGCTTA+AGG 0.473030 2:-80411350 MsG0280011165.01.T01:CDS
TGGAAGCAAAGTACATAGAA+AGG 0.475190 2:-80411536 MsG0280011165.01.T01:CDS
ATGTGTTGAGATATGATTAT+GGG 0.477790 2:-80411228 MsG0280011165.01.T01:CDS
AAGAATAGAAGAATCTTGTT+GGG 0.478669 2:-80411169 MsG0280011165.01.T01:CDS
TGGTTTAATTGAATGAAGTT+GGG 0.478880 2:+80412845 None:intergenic
ATAGAAGAATCTTGTTGGGT+TGG 0.480625 2:-80411165 MsG0280011165.01.T01:CDS
TTGGCCCACCAAGGTGATCA+AGG 0.481677 2:-80410714 MsG0280011165.01.T01:CDS
TTTATATCTGACGGTTGAGA+TGG 0.484965 2:+80411817 None:intergenic
TGTTCCGGATAATGGATTTG+AGG 0.485113 2:-80411260 MsG0280011165.01.T01:CDS
CATATAACAAAGCCTTATCA+TGG 0.485853 2:+80409482 None:intergenic
CTGACCCATTACTTAGAGAA+TGG 0.488472 2:-80411678 MsG0280011165.01.T01:CDS
CCTCCCTTGATCACCTTGGT+GGG 0.490119 2:+80410710 None:intergenic
GAACAATAATAAGCATGGTC+AGG 0.490969 2:-80409232 MsG0280011165.01.T01:three_prime_UTR
TCTTGTGAATTGGACACCAT+TGG 0.493731 2:-80411854 MsG0280011165.01.T01:CDS
AAGATGAACTCTCAAGAGTT+CGG 0.497881 2:+80412731 None:intergenic
TGGGACTTATGATACTGTTA+AGG 0.500179 2:-80411290 MsG0280011165.01.T01:CDS
TGATCCAATTCTTGAGAGGT+TGG 0.501083 2:+80412662 None:intergenic
ATAAGGTTGATCATGATTTG+AGG 0.502178 2:+80412702 None:intergenic
TTCTACCAATACAATCCAAA+AGG 0.504711 2:-80411922 MsG0280011165.01.T01:CDS
TTATGAAGCCAGATAGCCCT+TGG 0.506124 2:+80410803 None:intergenic
GCAAGCACGTGCAGACCAAA+TGG 0.509880 2:+80410296 None:intergenic
TTATATCTGACGGTTGAGAT+GGG 0.511411 2:+80411818 None:intergenic
CGTCAGATATAAAAGGTTGT+TGG 0.511481 2:-80411807 MsG0280011165.01.T01:CDS
TACTGGTGTTAATTCAGTAC+AGG 0.515915 2:-80410672 MsG0280011165.01.T01:intron
TCATGTGCAGCGATCAAAGC+AGG 0.519327 2:-80410202 MsG0280011165.01.T01:intron
ACATGGTGGGTAGCTTCAAT+GGG 0.520184 2:+80412757 None:intergenic
TAAAGTCCTCCATATCTCAT+TGG 0.522533 2:+80411952 None:intergenic
GAAGCTGTCACTAAGAACTT+TGG 0.524205 2:-80410018 MsG0280011165.01.T01:intron
TTCACCTCCCTTGATCACCT+TGG 0.525217 2:+80410706 None:intergenic
AAGATCCTTTGATACTGAAT+GGG 0.527419 2:+80411873 None:intergenic
CAAAACTCTCCACCACTGAA+TGG 0.531049 2:+80409557 None:intergenic
CAGGGAAACAGTTGGTGCAA+TGG 0.536764 2:-80410778 MsG0280011165.01.T01:CDS
GGAAGCAAAGTACATAGAAA+GGG 0.540879 2:-80411535 MsG0280011165.01.T01:CDS
TGAATTTGTAGACTATTCCA+AGG 0.543867 2:-80410820 MsG0280011165.01.T01:intron
GCATCAGTAAAAGGTGGTGT+TGG 0.545185 2:-80410320 MsG0280011165.01.T01:CDS
AATAAGAATCCATTAACCAT+TGG 0.548372 2:-80411397 MsG0280011165.01.T01:CDS
CTGTTTGGGGAAATATTGTG+TGG 0.551490 2:-80411897 MsG0280011165.01.T01:CDS
CAGCTGAAGGAACAGGAATG+TGG 0.551552 2:-80411447 MsG0280011165.01.T01:CDS
TATCTGACGGTTGAGATGGG+TGG 0.553345 2:+80411821 None:intergenic
GTTCCTTCAGCTGAATGTAA+AGG 0.562040 2:+80411457 None:intergenic
AGCTGAAGGAACAGGAATGT+GGG 0.562527 2:-80411446 MsG0280011165.01.T01:CDS
AGTGACAGCTTCTCATGAAG+TGG 0.562807 2:+80410029 None:intergenic
CATCCTTTACATTCAGCTGA+AGG 0.563353 2:-80411460 MsG0280011165.01.T01:CDS
TTATCATGGATTGCTAATGT+AGG 0.564154 2:+80409496 None:intergenic
GTTGTTGATGATGTCAAGAA+AGG 0.565288 2:-80411124 MsG0280011165.01.T01:CDS
CTATCTGGCTTCATAAATCA+GGG 0.565560 2:-80410796 MsG0280011165.01.T01:CDS
TTTGTGAACAATAATAAGCA+TGG 0.566089 2:-80409237 MsG0280011165.01.T01:three_prime_UTR
GTATACGTTAATGAAACTTG+AGG 0.567083 2:+80409319 None:intergenic
CCGTTGATCCAATTCTTGAG+AGG 0.568960 2:+80412658 None:intergenic
GGTCTTGATACATCTATGAA+TGG 0.571013 2:-80411376 MsG0280011165.01.T01:CDS
TCTCAAGAGTTCGGTAAACA+TGG 0.574499 2:+80412740 None:intergenic
GACCCAACTACTTCTTGGCT+AGG 0.576656 2:-80411586 MsG0280011165.01.T01:CDS
TTTGCCACCTGGAAGTATTG+TGG 0.577652 2:+80411774 None:intergenic
AATTGGAGAGATAGCCATTG+TGG 0.581945 2:+80412825 None:intergenic
CTTCTTGGCTAGGAAAAGAT+GGG 0.582861 2:-80411576 MsG0280011165.01.T01:CDS
TTTAATTGAATGAAGTTGGG+TGG 0.587068 2:+80412848 None:intergenic
GTGGGCCCATTCAGTATCAA+AGG 0.592486 2:-80411878 MsG0280011165.01.T01:CDS
ATCCACAAAAGTCCCATATG+TGG 0.593272 2:+80410058 None:intergenic
AGAATGATATGACCACATAT+GGG 0.594872 2:-80410070 MsG0280011165.01.T01:CDS
CAAGAGTTCGGTAAACATGG+TGG 0.598399 2:+80412743 None:intergenic
TTCATTCAATTAAACCACAA+TGG 0.602829 2:-80412839 MsG0280011165.01.T01:exon
CATAGATGTATCAAGACCAA+TGG 0.605287 2:+80411381 None:intergenic
TGGCCCACCAAGGTGATCAA+GGG 0.606547 2:-80410713 MsG0280011165.01.T01:CDS
TGTTTGGGGAAATATTGTGT+GGG 0.611046 2:-80411896 MsG0280011165.01.T01:CDS
GTGACAGCTTCTCATGAAGT+GGG 0.617462 2:+80410030 None:intergenic
AAGAGTTCGGTAAACATGGT+GGG 0.619926 2:+80412744 None:intergenic
GTAGGACCAATGAGATATGG+AGG 0.621441 2:-80411958 MsG0280011165.01.T01:intron
TCATAAATCAGGGAAACAGT+TGG 0.623557 2:-80410786 MsG0280011165.01.T01:CDS
GGGTGGATTGCATGATCCAA+TGG 0.626420 2:+80411838 None:intergenic
CCCAGTCAATTGGCCCACCA+AGG 0.627984 2:-80410723 MsG0280011165.01.T01:CDS
ACAGATTGACCATTCAGTGG+TGG 0.630975 2:-80409566 MsG0280011165.01.T01:intron
CCTCTCAAGAATTGGATCAA+CGG 0.632578 2:-80412658 MsG0280011165.01.T01:intron
TTGATGATGTCAAGAAAGGA+TGG 0.633579 2:-80411120 MsG0280011165.01.T01:CDS
AATCCAAAAGGTGCTGTTTG+GGG 0.637524 2:-80411910 MsG0280011165.01.T01:CDS
ATACTAATTAAACAGGAGAG+TGG 0.656392 2:-80409367 MsG0280011165.01.T01:three_prime_UTR
CCCACCAAGGTGATCAAGGG+AGG 0.661740 2:-80410710 MsG0280011165.01.T01:CDS
GAATTTGTAGACTATTCCAA+GGG 0.667573 2:-80410819 MsG0280011165.01.T01:intron
AAGGGTGCATCAGTAAAAGG+TGG 0.677299 2:-80410326 MsG0280011165.01.T01:CDS
TTGACAGATTGACCATTCAG+TGG 0.705722 2:-80409569 MsG0280011165.01.T01:intron
TCAGCCACAATACTTCCAGG+TGG 0.756866 2:-80411778 MsG0280011165.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTCACTTTAATATAAA+AGG + Chr2:80410047-80410066 None:intergenic 10.0%
!! ATATTATATAGTTAAAATGT+TGG - Chr2:80409700-80409719 MsG0280011165.01.T01:intron 10.0%
!!! ATTAGTGATATAATTTTTTA+GGG - Chr2:80411060-80411079 MsG0280011165.01.T01:intron 10.0%
!!! GTTTTAATTTTACTAATTTA+TGG - Chr2:80412046-80412065 MsG0280011165.01.T01:intron 10.0%
!! AATATAAATGCTATATATAG+AGG - Chr2:80409666-80409685 MsG0280011165.01.T01:intron 15.0%
!! AATTATTGGTACATAATTTA+AGG + Chr2:80411868-80411887 None:intergenic 15.0%
!!! AAAGTAAAAATTTTGTTGAT+TGG - Chr2:80410537-80410556 MsG0280011165.01.T01:intron 15.0%
!!! AAATAGTTTATTGATTTCTT+TGG - Chr2:80412192-80412211 MsG0280011165.01.T01:intron 15.0%
!!! AAGTAAAAATTTTGTTGATT+GGG - Chr2:80410538-80410557 MsG0280011165.01.T01:intron 15.0%
!!! ATATCTTTTAATACTTTGAT+AGG - Chr2:80411923-80411942 MsG0280011165.01.T01:CDS 15.0%
!!! GATTAGTGATATAATTTTTT+AGG - Chr2:80411059-80411078 MsG0280011165.01.T01:intron 15.0%
!!! TAAGTTTGTTTTGAAATTAT+TGG + Chr2:80411882-80411901 None:intergenic 15.0%
!!! TATAGATAATGTTCTTTTAT+TGG - Chr2:80412688-80412707 MsG0280011165.01.T01:CDS 15.0%
!! AAATAAATGCAAGTTCATTT+AGG - Chr2:80410423-80410442 MsG0280011165.01.T01:intron 20.0%
!! AAATACAACCTATATAAGAA+AGG - Chr2:80411534-80411553 MsG0280011165.01.T01:CDS 20.0%
!! AATAAATGCAAGTTCATTTA+GGG - Chr2:80410424-80410443 MsG0280011165.01.T01:intron 20.0%
!! AATACAACCTATATAAGAAA+GGG - Chr2:80411535-80411554 MsG0280011165.01.T01:CDS 20.0%
!! AGCATTTATATTTGACAAAT+GGG + Chr2:80409658-80409677 None:intergenic 20.0%
!! ATATAGTTAAAATGTTGGAA+TGG - Chr2:80409705-80409724 MsG0280011165.01.T01:intron 20.0%
!! GATTAAAATATTTAGCACAA+GGG + Chr2:80409451-80409470 None:intergenic 20.0%
!! TAGCATTTATATTTGACAAA+TGG + Chr2:80409659-80409678 None:intergenic 20.0%
!! TGATTAAAATATTTAGCACA+AGG + Chr2:80409452-80409471 None:intergenic 20.0%
!! TTGTTATATGCTTTCAATAA+TGG - Chr2:80412563-80412582 MsG0280011165.01.T01:intron 20.0%
!!! AAAATTTGTTAAATAGTCCA+GGG + Chr2:80409887-80409906 None:intergenic 20.0%
!!! AAATTTAAAACATGTGTCAT+CGG + Chr2:80412321-80412340 None:intergenic 20.0%
!!! AAGTGAATTTTTGTTTTTGT+AGG - Chr2:80410056-80410075 MsG0280011165.01.T01:CDS 20.0%
!!! AGTAGATGTTTTGTTTTTTT+TGG - Chr2:80409980-80409999 MsG0280011165.01.T01:intron 20.0%
!!! ATAGTTTTTACATGTCAATA+TGG - Chr2:80411385-80411404 MsG0280011165.01.T01:CDS 20.0%
!!! CAAAAACATTTTTTGATGAT+GGG - Chr2:80410840-80410859 MsG0280011165.01.T01:intron 20.0%
!!! CAAAATTTGCTAACTTTATA+TGG - Chr2:80412234-80412253 MsG0280011165.01.T01:intron 20.0%
!!! CATATAAAGTTAGCAAATTT+TGG + Chr2:80412236-80412255 None:intergenic 20.0%
!!! TAAAATTTGTTAAATAGTCC+AGG + Chr2:80409888-80409907 None:intergenic 20.0%
!!! TCAAAAACATTTTTTGATGA+TGG - Chr2:80410839-80410858 MsG0280011165.01.T01:intron 20.0%
!!! TTTTGAACTTGATGATTATT+TGG + Chr2:80410311-80410330 None:intergenic 20.0%
!!! TTTTTGGATGAAAAAAAGTT+AGG - Chr2:80410016-80410035 MsG0280011165.01.T01:intron 20.0%
! AAACATGATCACTATTTGAT+TGG - Chr2:80410722-80410741 MsG0280011165.01.T01:CDS 25.0%
! AAAGCAAAGTAGAAATTAGT+TGG + Chr2:80409482-80409501 None:intergenic 25.0%
! AACATGATCACTATTTGATT+GGG - Chr2:80410723-80410742 MsG0280011165.01.T01:CDS 25.0%
! AAGAATAGAAGAATCTTGTT+GGG - Chr2:80410863-80410882 MsG0280011165.01.T01:intron 25.0%
! AAGAGAGTTAGCAATAAAAT+TGG + Chr2:80409227-80409246 None:intergenic 25.0%
! AATAAGAATCCATTAACCAT+TGG - Chr2:80410635-80410654 MsG0280011165.01.T01:intron 25.0%
! AATGTGTTGAGATATGATTA+TGG - Chr2:80410803-80410822 MsG0280011165.01.T01:CDS 25.0%
! AATTAGTATCACTACTTCTT+AGG + Chr2:80412654-80412673 None:intergenic 25.0%
! AGACAAAAATGACCAAATAT+AGG + Chr2:80412411-80412430 None:intergenic 25.0%
! AGTAGTGATACTAATTAAAC+AGG - Chr2:80412658-80412677 MsG0280011165.01.T01:intron 25.0%
! ATGGAAGTGGTATAAAAAAT+TGG + Chr2:80409633-80409652 None:intergenic 25.0%
! ATGTGTTGAGATATGATTAT+GGG - Chr2:80410804-80410823 MsG0280011165.01.T01:CDS 25.0%
! CAGATATCAACATAAGAATT+TGG - Chr2:80411804-80411823 MsG0280011165.01.T01:CDS 25.0%
! GCTTATTATTGTTCACAAAA+GGG + Chr2:80412794-80412813 None:intergenic 25.0%
! GGAATCATAAACACAATAAT+TGG - Chr2:80412067-80412086 MsG0280011165.01.T01:intron 25.0%
! TAACTTTATATGGATGTAGA+TGG - Chr2:80412244-80412263 MsG0280011165.01.T01:intron 25.0%
! TATATTTGACAAATGGGTAA+TGG + Chr2:80409652-80409671 None:intergenic 25.0%
! TATCCATTTGTCCAATAATT+CGG + Chr2:80411662-80411681 None:intergenic 25.0%
! TGATATTAACACGTCAATAT+TGG + Chr2:80411432-80411451 None:intergenic 25.0%
! TGCTTATTATTGTTCACAAA+AGG + Chr2:80412795-80412814 None:intergenic 25.0%
! TGGAAGTGGTATAAAAAATT+GGG + Chr2:80409632-80409651 None:intergenic 25.0%
! TGGTTTAATTGAATGAAGTT+GGG + Chr2:80409190-80409209 None:intergenic 25.0%
! TTAAATTAATCAATAGTCCC+TGG - Chr2:80409867-80409886 MsG0280011165.01.T01:intron 25.0%
! TTCATTCAATTAAACCACAA+TGG - Chr2:80409193-80409212 MsG0280011165.01.T01:three_prime_UTR 25.0%
! TTTGTGAACAATAATAAGCA+TGG - Chr2:80412795-80412814 MsG0280011165.01.T01:CDS 25.0%
!! AATGGATTCTTATTTGATAC+TGG + Chr2:80410629-80410648 None:intergenic 25.0%
!! AATTTAAAACATGTGTCATC+GGG + Chr2:80412320-80412339 None:intergenic 25.0%
!! ATAAAGTTAGCAAATTTTGG+TGG + Chr2:80412233-80412252 None:intergenic 25.0%
!! ATGATTTTATCAATACTTCG+TGG + Chr2:80412150-80412169 None:intergenic 25.0%
!! CAAATTTTGTGTAGTCAAAA+GGG - Chr2:80411688-80411707 MsG0280011165.01.T01:CDS 25.0%
!! TGGAATTCATGTAAGTTTTA+GGG - Chr2:80410937-80410956 MsG0280011165.01.T01:intron 25.0%
!! TTTTCCATTCTCTAAGTAAT+GGG + Chr2:80410361-80410380 None:intergenic 25.0%
!! TTTTTCCATTCTCTAAGTAA+TGG + Chr2:80410362-80410381 None:intergenic 25.0%
!!! ATTTGGTCATTTTTGTCTTT+TGG - Chr2:80412413-80412432 MsG0280011165.01.T01:intron 25.0%
!!! CTTTTGACTACACAAAATTT+GGG + Chr2:80411689-80411708 None:intergenic 25.0%
!!! GTGTATTTTTTTTCTTCTAC+AGG - Chr2:80411594-80411613 MsG0280011165.01.T01:CDS 25.0%
!!! TAAAGTTAGCAAATTTTGGT+GGG + Chr2:80412232-80412251 None:intergenic 25.0%
!!! TCATTTGAAGTGAAAGATTT+TGG - Chr2:80411631-80411650 MsG0280011165.01.T01:CDS 25.0%
!!! TGAACTTGCATTTATTTTGT+TGG + Chr2:80410420-80410439 None:intergenic 25.0%
!!! TTTTGACTACACAAAATTTG+GGG + Chr2:80411688-80411707 None:intergenic 25.0%
AAGATCCTTTGATACTGAAT+GGG + Chr2:80410162-80410181 None:intergenic 30.0%
AATGCAGAGTTTCCTATATT+TGG - Chr2:80412396-80412415 MsG0280011165.01.T01:intron 30.0%
AATTGTGATATACTAGTGCA+TGG - Chr2:80411156-80411175 MsG0280011165.01.T01:CDS 30.0%
ACATGTTATGCTGATCAAAA+TGG - Chr2:80409520-80409539 MsG0280011165.01.T01:CDS 30.0%
ACTGAATTAACACCAGTAAT+TGG + Chr2:80411358-80411377 None:intergenic 30.0%
AGAATGATATGACCACATAT+GGG - Chr2:80411962-80411981 MsG0280011165.01.T01:intron 30.0%
ATACTAATTAAACAGGAGAG+TGG - Chr2:80412665-80412684 MsG0280011165.01.T01:CDS 30.0%
ATCACCAAAAAATCCATTGA+TGG - Chr2:80410382-80410401 MsG0280011165.01.T01:CDS 30.0%
GAAGAATAGAAGAATCTTGT+TGG - Chr2:80410862-80410881 MsG0280011165.01.T01:intron 30.0%
GAATTTGTAGACTATTCCAA+GGG - Chr2:80411213-80411232 MsG0280011165.01.T01:CDS 30.0%
GTATACGTTAATGAAACTTG+AGG + Chr2:80412716-80412735 None:intergenic 30.0%
GTGGTTTAATTGAATGAAGT+TGG + Chr2:80409191-80409210 None:intergenic 30.0%
TACATTAGCAATCCATGATA+AGG - Chr2:80412538-80412557 MsG0280011165.01.T01:intron 30.0%
TATCAAAGGATCTTGTGAAT+TGG - Chr2:80410168-80410187 MsG0280011165.01.T01:intron 30.0%
TGAATTTGTAGACTATTCCA+AGG - Chr2:80411212-80411231 MsG0280011165.01.T01:CDS 30.0%
TTATCCTCAAATCCATTATC+CGG + Chr2:80410779-80410798 None:intergenic 30.0%
TTCTACCAATACAATCCAAA+AGG - Chr2:80410110-80410129 MsG0280011165.01.T01:intron 30.0%
TTTAATTGAATGAAGTTGGG+TGG + Chr2:80409187-80409206 None:intergenic 30.0%
TTTGATACTGGAAAGAAATC+AGG + Chr2:80410617-80410636 None:intergenic 30.0%
! AATGGGTCAGACATATTTTT+GGG + Chr2:80410344-80410363 None:intergenic 30.0%
! ACATCCTGATTTTGTATAGT+AGG - Chr2:80409737-80409756 MsG0280011165.01.T01:intron 30.0%
! ATAAGGTTGATCATGATTTG+AGG + Chr2:80409333-80409352 None:intergenic 30.0%
! CAACAACCTTTTATATCTGA+CGG + Chr2:80410227-80410246 None:intergenic 30.0%
! CATATAACAAAGCCTTATCA+TGG + Chr2:80412553-80412572 None:intergenic 30.0%
! CATCCTGATTTTGTATAGTA+GGG - Chr2:80409738-80409757 MsG0280011165.01.T01:intron 30.0%
! CCAAATTTTGTGTAGTCAAA+AGG - Chr2:80411687-80411706 MsG0280011165.01.T01:CDS 30.0%
! CTGGAATTCATGTAAGTTTT+AGG - Chr2:80410936-80410955 MsG0280011165.01.T01:intron 30.0%
! TCATCCAAAAAGTGTAGAAA+AGG + Chr2:80410007-80410026 None:intergenic 30.0%
! TTATCATGGATTGCTAATGT+AGG + Chr2:80412539-80412558 None:intergenic 30.0%
!! CCTTTTGACTACACAAAATT+TGG + Chr2:80411690-80411709 None:intergenic 30.0%
!! TAATGGGTCAGACATATTTT+TGG + Chr2:80410345-80410364 None:intergenic 30.0%
!! TGAAGTGAAAGATTTTGGAA+AGG - Chr2:80411636-80411655 MsG0280011165.01.T01:CDS 30.0%
!!! AGATTTTCAAGTTCTTTCAC+TGG + Chr2:80411280-80411299 None:intergenic 30.0%
!!! TACTTCGTGGTTTTATAATC+AGG + Chr2:80412137-80412156 None:intergenic 30.0%
!!! TTTATTTTGTTGGCAACAGT+AGG + Chr2:80410410-80410429 None:intergenic 30.0%
AAGATGAACTCTCAAGAGTT+CGG + Chr2:80409304-80409323 None:intergenic 35.0%
AAGTGATAGGCAGTTCTATA+AGG + Chr2:80409350-80409369 None:intergenic 35.0%
ACTCTCTTCTCTCTCATTTA+TGG - Chr2:80409239-80409258 MsG0280011165.01.T01:three_prime_UTR 35.0%
AGATCACAAGATTGAATGCT+TGG - Chr2:80412600-80412619 MsG0280011165.01.T01:intron 35.0%
AGCTGAATGTAAAGGATGTT+TGG + Chr2:80410570-80410589 None:intergenic 35.0%
ATAGAAGAATCTTGTTGGGT+TGG - Chr2:80410867-80410886 MsG0280011165.01.T01:intron 35.0%
ATTCCTGTGTACAAAATTGC+TGG + Chr2:80410284-80410303 None:intergenic 35.0%
CAAGATCCTTTGATACTGAA+TGG + Chr2:80410163-80410182 None:intergenic 35.0%
CATAGATGTATCAAGACCAA+TGG + Chr2:80410654-80410673 None:intergenic 35.0%
CGTCAGATATAAAAGGTTGT+TGG - Chr2:80410225-80410244 MsG0280011165.01.T01:CDS 35.0%
GAACAATAATAAGCATGGTC+AGG - Chr2:80412800-80412819 MsG0280011165.01.T01:CDS 35.0%
GAGAATGATATGACCACATA+TGG - Chr2:80411961-80411980 MsG0280011165.01.T01:intron 35.0%
GATATAAAAGGTTGTTGGTC+AGG - Chr2:80410230-80410249 MsG0280011165.01.T01:CDS 35.0%
GCATGTACCCTTTCTTATAT+AGG + Chr2:80411545-80411564 None:intergenic 35.0%
GGAAGCAAAGTACATAGAAA+GGG - Chr2:80410497-80410516 MsG0280011165.01.T01:intron 35.0%
GGTCTTGATACATCTATGAA+TGG - Chr2:80410656-80410675 MsG0280011165.01.T01:intron 35.0%
GTATCAAGACCAATGGTTAA+TGG + Chr2:80410647-80410666 None:intergenic 35.0%
TAAAGTCCTCCATATCTCAT+TGG + Chr2:80410083-80410102 None:intergenic 35.0%
TAGAAGAATCTTGTTGGGTT+GGG - Chr2:80410868-80410887 MsG0280011165.01.T01:intron 35.0%
TCATAAATCAGGGAAACAGT+TGG - Chr2:80411246-80411265 MsG0280011165.01.T01:CDS 35.0%
TCTCAACCGTCAGATATAAA+AGG - Chr2:80410218-80410237 MsG0280011165.01.T01:CDS 35.0%
TGATCAGCATAACATGTCAA+AGG + Chr2:80409517-80409536 None:intergenic 35.0%
TGATGTTAGACATGTGCTTA+AGG - Chr2:80410682-80410701 MsG0280011165.01.T01:CDS 35.0%
TGGAAGCAAAGTACATAGAA+AGG - Chr2:80410496-80410515 MsG0280011165.01.T01:intron 35.0%
TGGGACTTATGATACTGTTA+AGG - Chr2:80410742-80410761 MsG0280011165.01.T01:CDS 35.0%
TGTCCCTACTATACAAAATC+AGG + Chr2:80409744-80409763 None:intergenic 35.0%
TGTTAAGGATGTCTTTGTTC+CGG - Chr2:80410757-80410776 MsG0280011165.01.T01:CDS 35.0%
TGTTTGGGGAAATATTGTGT+GGG - Chr2:80410136-80410155 MsG0280011165.01.T01:intron 35.0%
TTATATCTGACGGTTGAGAT+GGG + Chr2:80410217-80410236 None:intergenic 35.0%
TTTATATCTGACGGTTGAGA+TGG + Chr2:80410218-80410237 None:intergenic 35.0%
TTTGTAGGACCAATGAGATA+TGG - Chr2:80410071-80410090 MsG0280011165.01.T01:CDS 35.0%
! AAACCAGCAATTTTGTACAC+AGG - Chr2:80410278-80410297 MsG0280011165.01.T01:CDS 35.0%
! ACATGTGCTTAAGGTTAGTT+TGG - Chr2:80410691-80410710 MsG0280011165.01.T01:CDS 35.0%
! CTATCTGGCTTCATAAATCA+GGG - Chr2:80411236-80411255 MsG0280011165.01.T01:CDS 35.0%
! GGTGAATTGATTCCAATTAC+TGG - Chr2:80411343-80411362 MsG0280011165.01.T01:CDS 35.0%
! TACTGGTGTTAATTCAGTAC+AGG - Chr2:80411360-80411379 MsG0280011165.01.T01:CDS 35.0%
! TGGTCCTTTTCTACACTTTT+TGG - Chr2:80410000-80410019 MsG0280011165.01.T01:intron 35.0%
!! GGGTATTGGAGAGTATTAAT+TGG - Chr2:80410476-80410495 MsG0280011165.01.T01:intron 35.0%
!! GTTGTTGATGATGTCAAGAA+AGG - Chr2:80410908-80410927 MsG0280011165.01.T01:intron 35.0%
!! TTGATGATGTCAAGAAAGGA+TGG - Chr2:80410912-80410931 MsG0280011165.01.T01:intron 35.0%
!! TTTTGGAAAGGCCGAATTAT+TGG - Chr2:80411648-80411667 MsG0280011165.01.T01:CDS 35.0%
!!! GGTTCCATCAATGGATTTTT+TGG + Chr2:80410389-80410408 None:intergenic 35.0%
!!! GTCAGACATATTTTTGGGTA+TGG + Chr2:80410339-80410358 None:intergenic 35.0%
AAGAGTTCGGTAAACATGGT+GGG + Chr2:80409291-80409310 None:intergenic 40.0%
AATTGGAGAGATAGCCATTG+TGG + Chr2:80409210-80409229 None:intergenic 40.0%
ACTTCCAACCTCTCAAGAAT+TGG - Chr2:80409366-80409385 MsG0280011165.01.T01:three_prime_UTR 40.0%
ACTTCTTGGCTAGGAAAAGA+TGG - Chr2:80410455-80410474 MsG0280011165.01.T01:intron 40.0%
AGAGGGATTGAACTAACCAT+TGG + Chr2:80409557-80409576 None:intergenic 40.0%
AGGCCGAATTATTGGACAAA+TGG - Chr2:80411656-80411675 MsG0280011165.01.T01:CDS 40.0%
AGGGATTGAACTAACCATTG+GGG + Chr2:80409555-80409574 None:intergenic 40.0%
ATCCACAAAAGTCCCATATG+TGG + Chr2:80411977-80411996 None:intergenic 40.0%
CATCCTTTACATTCAGCTGA+AGG - Chr2:80410572-80410591 MsG0280011165.01.T01:intron 40.0%
CCTCTCAAGAATTGGATCAA+CGG - Chr2:80409374-80409393 MsG0280011165.01.T01:three_prime_UTR 40.0%
CTGACCCATTACTTAGAGAA+TGG - Chr2:80410354-80410373 MsG0280011165.01.T01:CDS 40.0%
CTGTTTGGGGAAATATTGTG+TGG - Chr2:80410135-80410154 MsG0280011165.01.T01:intron 40.0%
CTTCTTGGCTAGGAAAAGAT+GGG - Chr2:80410456-80410475 MsG0280011165.01.T01:intron 40.0%
GAAGCTGTCACTAAGAACTT+TGG - Chr2:80412014-80412033 MsG0280011165.01.T01:intron 40.0%
GAGGGATTGAACTAACCATT+GGG + Chr2:80409556-80409575 None:intergenic 40.0%
GATGTCTTTGTTCCGGATAA+TGG - Chr2:80410764-80410783 MsG0280011165.01.T01:CDS 40.0%
GGAAACTCTGCATTTGCATT+TGG + Chr2:80412390-80412409 None:intergenic 40.0%
GGATGTAGATGGTCAAGATA+TGG - Chr2:80412255-80412274 MsG0280011165.01.T01:intron 40.0%
GTTCCTTCAGCTGAATGTAA+AGG + Chr2:80410578-80410597 None:intergenic 40.0%
TACGTATGAACCCAGTCAAT+TGG - Chr2:80411299-80411318 MsG0280011165.01.T01:CDS 40.0%
TCTCAAGAGTTCGGTAAACA+TGG + Chr2:80409295-80409314 None:intergenic 40.0%
TCTTGTGAATTGGACACCAT+TGG - Chr2:80410178-80410197 MsG0280011165.01.T01:intron 40.0%
TGATCCAATTCTTGAGAGGT+TGG + Chr2:80409373-80409392 None:intergenic 40.0%
TTACATTCAGCTGAAGGAAC+AGG - Chr2:80410578-80410597 MsG0280011165.01.T01:intron 40.0%
TTCCTAGCCAAGAAGTAGTT+GGG + Chr2:80410451-80410470 None:intergenic 40.0%
TTGACAGATTGACCATTCAG+TGG - Chr2:80412463-80412482 MsG0280011165.01.T01:intron 40.0%
TTTCCTAGCCAAGAAGTAGT+TGG + Chr2:80410452-80410471 None:intergenic 40.0%
! CAAAAGGGTGCATCAGTAAA+AGG - Chr2:80411703-80411722 MsG0280011165.01.T01:CDS 40.0%
! CAGCACCTTTTGGATTGTAT+TGG + Chr2:80410118-80410137 None:intergenic 40.0%
! GCTATCTGGCTTCATAAATC+AGG - Chr2:80411235-80411254 MsG0280011165.01.T01:CDS 40.0%
!! AATCCAAAAGGTGCTGTTTG+GGG - Chr2:80410122-80410141 MsG0280011165.01.T01:intron 40.0%
!! ACAATCCAAAAGGTGCTGTT+TGG - Chr2:80410120-80410139 MsG0280011165.01.T01:intron 40.0%
!! CAATCCAAAAGGTGCTGTTT+GGG - Chr2:80410121-80410140 MsG0280011165.01.T01:intron 40.0%
!! TGACAAATGGGTAATGGAAG+TGG + Chr2:80409646-80409665 None:intergenic 40.0%
!! TGTTCCGGATAATGGATTTG+AGG - Chr2:80410772-80410791 MsG0280011165.01.T01:CDS 40.0%
ACAGATTGACCATTCAGTGG+TGG - Chr2:80412466-80412485 MsG0280011165.01.T01:intron 45.0%
AGACTATTCCAAGGGCTATC+TGG - Chr2:80411221-80411240 MsG0280011165.01.T01:CDS 45.0%
AGCTGAAGGAACAGGAATGT+GGG - Chr2:80410586-80410605 MsG0280011165.01.T01:intron 45.0%
AGTGACAGCTTCTCATGAAG+TGG + Chr2:80412006-80412025 None:intergenic 45.0%
CAAAACTCTCCACCACTGAA+TGG + Chr2:80412478-80412497 None:intergenic 45.0%
CAAGAGTTCGGTAAACATGG+TGG + Chr2:80409292-80409311 None:intergenic 45.0%
CATCAAGAGAGTCCAGAAGA+GGG + Chr2:80409574-80409593 None:intergenic 45.0%
CCGTTGATCCAATTCTTGAG+AGG + Chr2:80409377-80409396 None:intergenic 45.0%
CTTGAGAGGTTGGAAGTGAT+AGG + Chr2:80409363-80409382 None:intergenic 45.0%
GATGTCAAGAAAGGATGGTC+TGG - Chr2:80410917-80410936 MsG0280011165.01.T01:intron 45.0%
GCAACAGTAGGTTCCATCAA+TGG + Chr2:80410398-80410417 None:intergenic 45.0%
GCATCAGTAAAAGGTGGTGT+TGG - Chr2:80411712-80411731 MsG0280011165.01.T01:CDS 45.0%
GGCTAGGAAAAGATGGGTAT+TGG - Chr2:80410462-80410481 MsG0280011165.01.T01:intron 45.0%
GTAGGACCAATGAGATATGG+AGG - Chr2:80410074-80410093 MsG0280011165.01.T01:CDS 45.0%
GTGACAGCTTCTCATGAAGT+GGG + Chr2:80412005-80412024 None:intergenic 45.0%
TCATCAAGAGAGTCCAGAAG+AGG + Chr2:80409575-80409594 None:intergenic 45.0%
TTAGGGACCCAACTACTTCT+TGG - Chr2:80410441-80410460 MsG0280011165.01.T01:intron 45.0%
TTATGAAGCCAGATAGCCCT+TGG + Chr2:80411232-80411251 None:intergenic 45.0%
! AAAGGTGGTGTTGGACCATT+TGG - Chr2:80411721-80411740 MsG0280011165.01.T01:CDS 45.0%
! AAGGGTGCATCAGTAAAAGG+TGG - Chr2:80411706-80411725 MsG0280011165.01.T01:CDS 45.0%
! GACCACATATGGGACTTTTG+TGG - Chr2:80411972-80411991 MsG0280011165.01.T01:intron 45.0%
! GGTTAGTTCAATCCCTCTTC+TGG - Chr2:80409559-80409578 MsG0280011165.01.T01:CDS 45.0%
! TTTCCCCAAACAGCACCTTT+TGG + Chr2:80410128-80410147 None:intergenic 45.0%
!! AAAATTGCTGGTTTGCCACC+TGG + Chr2:80410272-80410291 None:intergenic 45.0%
!! AACATGGTGGGTAGCTTCAA+TGG + Chr2:80409279-80409298 None:intergenic 45.0%
!! ACATGGTGGGTAGCTTCAAT+GGG + Chr2:80409278-80409297 None:intergenic 45.0%
!! CATTCAGTGGTGGAGAGTTT+TGG - Chr2:80412476-80412495 MsG0280011165.01.T01:intron 45.0%
!! TTTGCCACCTGGAAGTATTG+TGG + Chr2:80410261-80410280 None:intergenic 45.0%
!!! ATTTTAACTATATAATATAT+AGG + Chr2:80409698-80409717 None:intergenic 5.0%
AATGGACATGCAGACCCCAA+TGG - Chr2:80409538-80409557 MsG0280011165.01.T01:CDS 50.0%
CAGCTGAAGGAACAGGAATG+TGG - Chr2:80410585-80410604 MsG0280011165.01.T01:intron 50.0%
CTGCACGTGCTTGCTTCTAA+AGG - Chr2:80411745-80411764 MsG0280011165.01.T01:CDS 50.0%
GACCCAACTACTTCTTGGCT+AGG - Chr2:80410446-80410465 MsG0280011165.01.T01:intron 50.0%
GTGGGCCCATTCAGTATCAA+AGG - Chr2:80410154-80410173 MsG0280011165.01.T01:intron 50.0%
TATCTGACGGTTGAGATGGG+TGG + Chr2:80410214-80410233 None:intergenic 50.0%
TCAGCCACAATACTTCCAGG+TGG - Chr2:80410254-80410273 MsG0280011165.01.T01:CDS 50.0%
TCATGTGCAGCGATCAAAGC+AGG - Chr2:80411830-80411849 MsG0280011165.01.T01:CDS 50.0%
TTCACCTCCCTTGATCACCT+TGG + Chr2:80411329-80411348 None:intergenic 50.0%
! CAGGGAAACAGTTGGTGCAA+TGG - Chr2:80411254-80411273 MsG0280011165.01.T01:CDS 50.0%
!! GGGTGGATTGCATGATCCAA+TGG + Chr2:80410197-80410216 None:intergenic 50.0%
!! GTGGAGAGTTTTGGTGGAGA+AGG - Chr2:80412485-80412504 MsG0280011165.01.T01:intron 50.0%
!! TCAGTGGTGGAGAGTTTTGG+TGG - Chr2:80412479-80412498 MsG0280011165.01.T01:intron 50.0%
ACCTCCCTTGATCACCTTGG+TGG + Chr2:80411326-80411345 None:intergenic 55.0%
CCTCCCTTGATCACCTTGGT+GGG + Chr2:80411325-80411344 None:intergenic 55.0%
GCAAGCACGTGCAGACCAAA+TGG + Chr2:80411739-80411758 None:intergenic 55.0%
GGCTCAGCCACAATACTTCC+AGG - Chr2:80410251-80410270 MsG0280011165.01.T01:CDS 55.0%
TGGCCCACCAAGGTGATCAA+GGG - Chr2:80411319-80411338 MsG0280011165.01.T01:CDS 55.0%
TTGGCCCACCAAGGTGATCA+AGG - Chr2:80411318-80411337 MsG0280011165.01.T01:CDS 55.0%
! ACCTTGGTGGGCCAATTGAC+TGG + Chr2:80411313-80411332 None:intergenic 55.0%
! CCTTGGTGGGCCAATTGACT+GGG + Chr2:80411312-80411331 None:intergenic 55.0%
CCCACCAAGGTGATCAAGGG+AGG - Chr2:80411322-80411341 MsG0280011165.01.T01:CDS 60.0%
CCCAGTCAATTGGCCCACCA+AGG - Chr2:80411309-80411328 MsG0280011165.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 80409183 80412871 80409183 ID=MsG0280011165.01;Name=MsG0280011165.01
Chr2 mRNA 80409183 80412871 80409183 ID=MsG0280011165.01.T01;Parent=MsG0280011165.01;Name=MsG0280011165.01.T01;_AED=0.25;_eAED=0.25;_QI=29|1|1|1|0.8|0.66|6|222|572
Chr2 exon 80409183 80409584 80409183 ID=MsG0280011165.01.T01:exon:17717;Parent=MsG0280011165.01.T01
Chr2 exon 80410019 80410109 80410019 ID=MsG0280011165.01.T01:exon:17716;Parent=MsG0280011165.01.T01
Chr2 exon 80410203 80410438 80410203 ID=MsG0280011165.01.T01:exon:17715;Parent=MsG0280011165.01.T01
Chr2 exon 80410673 80410831 80410673 ID=MsG0280011165.01.T01:exon:17714;Parent=MsG0280011165.01.T01
Chr2 exon 80411108 80411976 80411108 ID=MsG0280011165.01.T01:exon:17713;Parent=MsG0280011165.01.T01
Chr2 exon 80412659 80412871 80412659 ID=MsG0280011165.01.T01:exon:17712;Parent=MsG0280011165.01.T01
Chr2 five_prime_UTR 80412843 80412871 80412843 ID=MsG0280011165.01.T01:five_prime_utr;Parent=MsG0280011165.01.T01
Chr2 CDS 80412659 80412842 80412659 ID=MsG0280011165.01.T01:cds;Parent=MsG0280011165.01.T01
Chr2 CDS 80411108 80411976 80411108 ID=MsG0280011165.01.T01:cds;Parent=MsG0280011165.01.T01
Chr2 CDS 80410673 80410831 80410673 ID=MsG0280011165.01.T01:cds;Parent=MsG0280011165.01.T01
Chr2 CDS 80410203 80410438 80410203 ID=MsG0280011165.01.T01:cds;Parent=MsG0280011165.01.T01
Chr2 CDS 80410019 80410109 80410019 ID=MsG0280011165.01.T01:cds;Parent=MsG0280011165.01.T01
Chr2 CDS 80409405 80409584 80409405 ID=MsG0280011165.01.T01:cds;Parent=MsG0280011165.01.T01
Chr2 three_prime_UTR 80409183 80409404 80409183 ID=MsG0280011165.01.T01:three_prime_utr;Parent=MsG0280011165.01.T01
Gene Sequence

>MsG0280011165.01.T01

ATGGCTATCTCTCCAATTTTATTGCTAACTCTCTTCTCTCTCATTTATGGCAATTATGTTATTCCCATTGAAGCTACCCACCATGTTTACCGAACTCTTGAGAGTTCATCTTCTGATTCCTCAAATCATGATCAACCTTATAGAACTGCCTATCACTTCCAACCTCTCAAGAATTGGATCAACGGACCAATGAGATATGGAGGACTTTATCATCTGTTCTACCAATACAATCCAAAAGGTGCTGTTTGGGGAAATATTGTGTGGGCCCATTCAGTATCAAAGGATCTTGTGAATTGGACACCATTGGATCATGCAATCCACCCATCTCAACCGTCAGATATAAAAGGTTGTTGGTCAGGCTCAGCCACAATACTTCCAGGTGGCAAACCAGCAATTTTGTACACAGGAATTGATCCAAATAATCATCAAGTTCAAAACATAGCCATACCCAAAAATATGTCTGACCCATTACTTAGAGAATGGAAAAAATCACCAAAAAATCCATTGATGGAACCTACTGTTGCCAACAAAATAAATGCAAGTTCATTTAGGGACCCAACTACTTCTTGGCTAGGAAAAGATGGGTATTGGAGAGTATTAATTGGAAGCAAAGTACATAGAAAGGGAATTGCAATTATGTACAAAAGTAAAAATTTTGTTGATTGGGTTGAAGCCAAACATCCTTTACATTCAGCTGAAGGAACAGGAATGTGGGAGTGTCCTGATTTCTTTCCAGTATCAAATAAGAATCCATTAACCATTGGTCTTGATACATCTATGAATGGTGATGATGTTAGACATGTGCTTAAGGTTAGTTTGGATGACACAAAACATGATCACTATTTGATTGGGACTTATGATACTGTTAAGGATGTCTTTGTTCCGGATAATGGATTTGAGGATAATCAAAATGTGTTGAGATATGATTATGGGAAATATTATGCATCAAAAACATTTTTTGATGATGGGAAGAATAGAAGAATCTTGTTGGGTTGGGCTAATGAATCTTCAAGTGTTGTTGATGATGTCAAGAAAGGATGGTCTGGAATTCATACTATTCCAAGGGCTATCTGGCTTCATAAATCAGGGAAACAGTTGGTGCAATGGCCAGTGAAAGAACTTGAAAATCTACGTATGAACCCAGTCAATTGGCCCACCAAGGTGATCAAGGGAGGTGAATTGATTCCAATTACTGGTGTTAATTCAGTACAGGCTGATGTTGAAATTTCATTTGAAGTGAAAGATTTTGGAAAGGCCGAATTATTGGACAAATGGATAGATCCCCAAATTTTGTGTAGTCAAAAGGGTGCATCAGTAAAAGGTGGTGTTGGACCATTTGGTCTGCACGTGCTTGCTTCTAAAGGCTTGCAAGAGTACACAGCAGTATTTTTTAGAATATTCAGATATCAACATAAGAATTTGGTTCTCATGTGCAGCGATCAAAGCAGGTCATCTTTGAATAAAGAGAATGATATGACCACATATGGGACTTTTGTGGATGTTGACCCACTTCATGAGAAGCTGTCACTAAGAACTTTGATTGACCATTCAGTGGTGGAGAGTTTTGGTGGAGAAGGAAGAGCTTGCATCACAGCTAGAGTTTATCCTACATTAGCAATCCATGATAAGGCTTTGTTATATGCTTTCAATAATGGAAATTCTGCAGTCAAGATCACAAGATTGAATGCTTGGAGCATGAAGAAAGCAAAAATCAACTAA

Protein sequence

>MsG0280011165.01.T01

MAISPILLLTLFSLIYGNYVIPIEATHHVYRTLESSSSDSSNHDQPYRTAYHFQPLKNWINGPMRYGGLYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWTPLDHAIHPSQPSDIKGCWSGSATILPGGKPAILYTGIDPNNHQVQNIAIPKNMSDPLLREWKKSPKNPLMEPTVANKINASSFRDPTTSWLGKDGYWRVLIGSKVHRKGIAIMYKSKNFVDWVEAKHPLHSAEGTGMWECPDFFPVSNKNPLTIGLDTSMNGDDVRHVLKVSLDDTKHDHYLIGTYDTVKDVFVPDNGFEDNQNVLRYDYGKYYASKTFFDDGKNRRILLGWANESSSVVDDVKKGWSGIHTIPRAIWLHKSGKQLVQWPVKELENLRMNPVNWPTKVIKGGELIPITGVNSVQADVEISFEVKDFGKAELLDKWIDPQILCSQKGASVKGGVGPFGLHVLASKGLQEYTAVFFRIFRYQHKNLVLMCSDQSRSSLNKENDMTTYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACITARVYPTLAIHDKALLYAFNNGNSAVKITRLNAWSMKKAKIN*