Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0080048113.01 | 0.810303 | 1.232895e-50 | 7.404882e-48 |
| MsG0080047940.01 | MsG0080048113.01 | 0.819692 | 1.016234e-52 | 7.875704e-50 |
| MsG0080048113.01 | MsG0080048404.01 | 0.817250 | 3.634338e-52 | 2.633082e-49 |
| MsG0080048113.01 | MsG0080048600.01 | 0.828797 | 7.361545e-55 | 7.393492e-52 |
| MsG0080048113.01 | MsG0080048618.01 | 0.806338 | 8.633372e-50 | 4.674027e-47 |
| MsG0080048113.01 | MsG0080048856.01 | 0.830343 | 3.097977e-55 | 3.255097e-52 |
| MsG0080048113.01 | MsG0080049032.01 | 0.805282 | 1.439453e-49 | 7.584682e-47 |
| MsG0080048113.01 | MsG0180000139.01 | 0.873540 | 1.358970e-67 | 5.920013e-64 |
| MsG0080048113.01 | MsG0180000209.01 | 0.814456 | 1.526847e-51 | 1.025005e-48 |
| MsG0080048113.01 | MsG0180000470.01 | 0.809995 | 1.436204e-50 | 8.557779e-48 |
| MsG0080048113.01 | MsG0180001172.01 | 0.809412 | 1.916504e-50 | 1.124512e-47 |
| MsG0080048113.01 | MsG0180003669.01 | 0.835160 | 1.972671e-56 | 2.392200e-53 |
| MsG0080048113.01 | MsG0180003920.01 | 0.832587 | 8.682721e-56 | 9.748221e-53 |
| MsG0080048113.01 | MsG0180004099.01 | 0.812450 | 4.214879e-51 | 2.680919e-48 |
| MsG0080048113.01 | MsG0180004152.01 | 0.826351 | 2.845283e-54 | 2.661794e-51 |
| MsG0080048113.01 | MsG0180004389.01 | 0.832633 | 8.456441e-56 | 9.507095e-53 |
| MsG0080048113.01 | MsG0180004463.01 | 0.862691 | 4.234482e-64 | 1.251045e-60 |
| MsG0080048113.01 | MsG0180004481.01 | 0.841549 | 4.441684e-58 | 6.549282e-55 |
| MsG0080048113.01 | MsG0180004482.01 | 0.843280 | 1.544304e-58 | 2.404319e-55 |
| MsG0080048113.01 | MsG0180004509.01 | 0.847013 | 1.512673e-59 | 2.651996e-56 |
| MsG0080048113.01 | MsG0180004711.01 | 0.856774 | 2.563335e-62 | 6.185380e-59 |
| MsG0080048113.01 | MsG0180004975.01 | 0.818714 | 1.697338e-52 | 1.280196e-49 |
| MsG0080048113.01 | MsG0180005250.01 | 0.822494 | 2.298369e-53 | 1.926843e-50 |
| MsG0080048113.01 | MsG0180005393.01 | 0.808154 | 3.560290e-50 | 2.020615e-47 |
| MsG0080048113.01 | MsG0180005575.01 | 0.807137 | 5.855389e-50 | 3.235802e-47 |
| MsG0080048113.01 | MsG0180005659.01 | 0.826772 | 2.258158e-54 | 2.137945e-51 |
| MsG0080048113.01 | MsG0180005763.01 | 0.806613 | 7.555601e-50 | 4.119252e-47 |
| MsG0080048113.01 | MsG0280006299.01 | 0.849116 | 3.974647e-60 | 7.457680e-57 |
| MsG0080048113.01 | MsG0280006375.01 | 0.809116 | 2.218753e-50 | 1.291566e-47 |
| MsG0080048113.01 | MsG0280006405.01 | 0.827955 | 1.175449e-54 | 1.152039e-51 |
| MsG0080048113.01 | MsG0280006407.01 | 0.819341 | 1.221992e-52 | 9.377241e-50 |
| MsG0080048113.01 | MsG0280006512.01 | 0.803811 | 2.917588e-49 | 1.480245e-46 |
| MsG0080048113.01 | MsG0280006993.01 | 0.818143 | 2.285578e-52 | 1.696976e-49 |
| MsG0080048113.01 | MsG0280007527.01 | 0.803481 | 3.414408e-49 | 1.717773e-46 |
| MsG0080048113.01 | MsG0280007529.01 | 0.811089 | 8.333000e-51 | 5.111038e-48 |
| MsG0080048113.01 | MsG0280007955.01 | 0.809109 | 2.225550e-50 | 1.295318e-47 |
| MsG0080048113.01 | MsG0280009421.01 | 0.804586 | 2.012143e-49 | 1.041421e-46 |
| MsG0080048113.01 | MsG0280009493.01 | 0.800227 | 1.591396e-48 | 7.370287e-46 |
| MsG0080048113.01 | MsG0280009794.01 | 0.844735 | 6.289648e-59 | 1.025006e-55 |
| MsG0080048113.01 | MsG0280010698.01 | 0.800049 | 1.729660e-48 | 7.974477e-46 |
| MsG0080048113.01 | MsG0280010778.01 | 0.822538 | 2.245836e-53 | 1.885220e-50 |
| MsG0080048113.01 | MsG0280010980.01 | 0.824541 | 7.631587e-54 | 6.780193e-51 |
| MsG0080048113.01 | MsG0280011003.01 | 0.842156 | 3.070613e-58 | 4.614455e-55 |
| MsG0080048113.01 | MsG0280011013.01 | 0.836018 | 1.196684e-56 | 1.489019e-53 |
| MsG0080048113.01 | MsG0280011014.01 | 0.819146 | 1.353712e-52 | 1.033248e-49 |
| MsG0080048113.01 | MsG0280011101.01 | 0.821088 | 4.862247e-53 | 3.917612e-50 |
| MsG0080048113.01 | MsG0280011282.01 | 0.805353 | 1.390620e-49 | 7.341101e-47 |
| MsG0080048113.01 | MsG0280011339.01 | 0.822299 | 2.551294e-53 | 2.127086e-50 |
| MsG0080048113.01 | MsG0280011416.01 | 0.813638 | 2.312736e-51 | 1.518537e-48 |
| MsG0080048113.01 | MsG0380011617.01 | 0.816128 | 6.487702e-52 | 4.558213e-49 |
| MsG0080048113.01 | MsG0380012460.01 | 0.809224 | 2.103289e-50 | 1.227910e-47 |
| MsG0080048113.01 | MsG0380012471.01 | 0.823837 | 1.116812e-53 | 9.725802e-51 |
| MsG0080048113.01 | MsG0380013178.01 | 0.842972 | 1.864731e-58 | 2.874736e-55 |
| MsG0080048113.01 | MsG0380013549.01 | 0.822676 | 2.085015e-53 | 1.757104e-50 |
| MsG0080048113.01 | MsG0380013834.01 | 0.813532 | 2.440065e-51 | 1.597621e-48 |
| MsG0080048113.01 | MsG0380014173.01 | 0.822769 | 1.984256e-53 | 1.676621e-50 |
| MsG0080048113.01 | MsG0380014537.01 | 0.821365 | 4.197964e-53 | 3.408226e-50 |
| MsG0080048113.01 | MsG0380014681.01 | 0.813799 | 2.131484e-51 | 1.405642e-48 |
| MsG0080048113.01 | MsG0380014703.01 | 0.832091 | 1.152166e-55 | 1.274607e-52 |
| MsG0080048113.01 | MsG0380015164.01 | 0.821920 | 3.122921e-53 | 2.575586e-50 |
| MsG0080048113.01 | MsG0380015168.01 | 0.817140 | 3.848800e-52 | 2.780116e-49 |
| MsG0080048113.01 | MsG0380015555.01 | 0.808176 | 3.522257e-50 | 2.000232e-47 |
| MsG0080048113.01 | MsG0380015566.01 | 0.819676 | 1.024820e-52 | 7.938709e-50 |
| MsG0080048113.01 | MsG0380015631.01 | 0.820806 | 5.646367e-53 | 4.513728e-50 |
| MsG0080048113.01 | MsG0380015720.01 | 0.811430 | 7.027578e-51 | 4.349347e-48 |
| MsG0080048113.01 | MsG0380016910.01 | 0.827387 | 1.609513e-54 | 1.551734e-51 |
| MsG0080048113.01 | MsG0380017369.01 | 0.806489 | 8.024045e-50 | 4.360921e-47 |
| MsG0080048113.01 | MsG0480018163.01 | 0.837733 | 4.366670e-57 | 5.724720e-54 |
| MsG0080048113.01 | MsG0480018507.01 | 0.822819 | 1.931194e-53 | 1.634074e-50 |
| MsG0080048113.01 | MsG0480018894.01 | 0.806207 | 9.199733e-50 | 4.964369e-47 |
| MsG0080048113.01 | MsG0480019416.01 | 0.830670 | 2.576856e-55 | 2.733580e-52 |
| MsG0080048113.01 | MsG0480019810.01 | 0.880786 | 4.120789e-70 | 2.354832e-66 |
| MsG0080048113.01 | MsG0480020739.01 | 0.830310 | 3.155392e-55 | 3.312097e-52 |
| MsG0080048113.01 | MsG0480021164.01 | 0.806803 | 6.888135e-50 | 3.773901e-47 |
| MsG0080048113.01 | MsG0480021215.01 | 0.809172 | 2.158215e-50 | 1.258208e-47 |
| MsG0080048113.01 | MsG0480021447.01 | 0.803841 | 2.875899e-49 | 1.460286e-46 |
| MsG0080048113.01 | MsG0480021452.01 | 0.809113 | 2.221324e-50 | 1.292978e-47 |
| MsG0080048113.01 | MsG0480021465.01 | 0.800474 | 1.416863e-48 | 6.603215e-46 |
| MsG0080048113.01 | MsG0480021491.01 | 0.810949 | 8.936021e-51 | 5.461118e-48 |
| MsG0080048113.01 | MsG0480021536.01 | 0.827411 | 1.588245e-54 | 1.532238e-51 |
| MsG0080048113.01 | MsG0480021750.01 | 0.801573 | 8.449922e-49 | 4.049055e-46 |
| MsG0080048113.01 | MsG0480022164.01 | 0.835660 | 1.474475e-56 | 1.815063e-53 |
| MsG0080048113.01 | MsG0480022213.01 | -0.803890 | 2.808885e-49 | 1.428116e-46 |
| MsG0080048113.01 | MsG0480022795.01 | 0.849606 | 2.902827e-60 | 5.533093e-57 |
| MsG0080048113.01 | MsG0480022836.01 | 0.812143 | 4.916522e-51 | 3.101318e-48 |
| MsG0080048113.01 | MsG0480023163.01 | 0.814846 | 1.251050e-51 | 8.487438e-49 |
| MsG0080048113.01 | MsG0480023463.01 | 0.844797 | 6.049890e-59 | 9.878970e-56 |
| MsG0080048113.01 | MsG0480023600.01 | 0.803323 | 3.682165e-49 | 1.844867e-46 |
| MsG0080048113.01 | MsG0480023636.01 | 0.815810 | 7.640586e-52 | 5.321829e-49 |
| MsG0080048113.01 | MsG0480023707.01 | 0.817574 | 3.072828e-52 | 2.246094e-49 |
| MsG0080048113.01 | MsG0580024197.01 | 0.832217 | 1.072457e-55 | 1.190801e-52 |
| MsG0080048113.01 | MsG0580024390.01 | 0.823373 | 1.434570e-53 | 1.232838e-50 |
| MsG0080048113.01 | MsG0580024544.01 | 0.810122 | 1.348647e-50 | 8.062403e-48 |
| MsG0080048113.01 | MsG0580025587.01 | 0.804352 | 2.251525e-49 | 1.158324e-46 |
| MsG0080048113.01 | MsG0580025638.01 | 0.813502 | 2.477513e-51 | 1.620823e-48 |
| MsG0080048113.01 | MsG0580026309.01 | 0.801300 | 9.610306e-49 | 4.573628e-46 |
| MsG0080048113.01 | MsG0580027031.01 | 0.837766 | 4.282948e-57 | 5.620770e-54 |
| MsG0080048113.01 | MsG0580027361.01 | 0.801998 | 6.909772e-49 | 3.346990e-46 |
| MsG0080048113.01 | MsG0580027650.01 | 0.820637 | 6.174456e-53 | 4.912052e-50 |
| MsG0080048113.01 | MsG0680030882.01 | 0.816752 | 4.703512e-52 | 3.361610e-49 |
| MsG0080048113.01 | MsG0680031214.01 | 0.828209 | 1.021141e-54 | 1.008258e-51 |
| MsG0080048113.01 | MsG0680031488.01 | 0.862400 | 5.207095e-64 | 1.522870e-60 |
| MsG0080048113.01 | MsG0680031506.01 | 0.807728 | 4.387457e-50 | 2.462261e-47 |
| MsG0080048113.01 | MsG0680031652.01 | 0.820337 | 7.233741e-53 | 5.707685e-50 |
| MsG0080048113.01 | MsG0680033913.01 | 0.802932 | 4.436312e-49 | 2.200620e-46 |
| MsG0080048113.01 | MsG0680034285.01 | 0.835353 | 1.763407e-56 | 2.151081e-53 |
| MsG0080048113.01 | MsG0680035692.01 | 0.828712 | 7.717114e-55 | 7.731540e-52 |
| MsG0080048113.01 | MsG0780036477.01 | 0.831796 | 1.362542e-55 | 1.494573e-52 |
| MsG0080048113.01 | MsG0780036815.01 | 0.821882 | 3.188071e-53 | 2.626513e-50 |
| MsG0080048113.01 | MsG0780037919.01 | 0.806855 | 6.715557e-50 | 3.684393e-47 |
| MsG0080048113.01 | MsG0780038401.01 | 0.844699 | 6.430189e-59 | 1.046650e-55 |
| MsG0080048113.01 | MsG0780039059.01 | 0.805688 | 1.183144e-49 | 6.300064e-47 |
| MsG0080048113.01 | MsG0780039063.01 | 0.834385 | 3.089742e-56 | 3.660956e-53 |
| MsG0080048113.01 | MsG0780039137.01 | 0.808568 | 2.905180e-50 | 1.666724e-47 |
| MsG0080048113.01 | MsG0780039243.01 | 0.809598 | 1.748353e-50 | 1.030938e-47 |
| MsG0080048113.01 | MsG0780039844.01 | 0.816648 | 4.961418e-52 | 3.535951e-49 |
| MsG0080048113.01 | MsG0780039866.01 | 0.806632 | 7.486536e-50 | 4.083425e-47 |
| MsG0080048113.01 | MsG0780040057.01 | 0.852617 | 4.103387e-61 | 8.623755e-58 |
| MsG0080048113.01 | MsG0780040604.01 | 0.854194 | 1.447547e-61 | 3.207559e-58 |
| MsG0080048113.01 | MsG0780040704.01 | 0.810579 | 1.074591e-50 | 6.501884e-48 |
| MsG0080048113.01 | MsG0780040841.01 | 0.847034 | 1.492837e-59 | 2.619159e-56 |
| MsG0080048113.01 | MsG0780041402.01 | 0.828478 | 8.791465e-55 | 8.748746e-52 |
| MsG0080048113.01 | MsG0780041462.01 | 0.831929 | 1.263134e-55 | 1.390971e-52 |
| MsG0080048113.01 | MsG0780041535.01 | 0.800255 | 1.570034e-48 | 7.276758e-46 |
| MsG0080048113.01 | MsG0880041860.01 | 0.807376 | 5.210765e-50 | 2.897598e-47 |
| MsG0080048113.01 | MsG0880041986.01 | 0.824699 | 7.006029e-54 | 6.253271e-51 |
| MsG0080048113.01 | MsG0880042158.01 | 0.820839 | 5.548541e-53 | 4.439592e-50 |
| MsG0080048113.01 | MsG0880042232.01 | 0.827441 | 1.562099e-54 | 1.508285e-51 |
| MsG0080048113.01 | MsG0880042294.01 | 0.824466 | 7.948261e-54 | 7.045590e-51 |
| MsG0080048113.01 | MsG0880043034.01 | 0.808823 | 2.562597e-50 | 1.480044e-47 |
| MsG0080048113.01 | MsG0880043479.01 | 0.839196 | 1.830826e-57 | 2.509610e-54 |
| MsG0080048113.01 | MsG0880043614.01 | 0.842904 | 1.944080e-58 | 2.990830e-55 |
| MsG0080048113.01 | MsG0880043616.01 | 0.814787 | 1.289628e-51 | 8.734979e-49 |
| MsG0080048113.01 | MsG0880045372.01 | 0.813938 | 1.986547e-51 | 1.314957e-48 |
| MsG0080048113.01 | MsG0880045736.01 | 0.818923 | 1.521348e-52 | 1.154277e-49 |
| MsG0080048113.01 | MsG0880045937.01 | 0.820151 | 7.981143e-53 | 6.265474e-50 |
| MsG0080048113.01 | MsG0880046012.01 | 0.843125 | 1.697879e-58 | 2.630162e-55 |
| MsG0080048113.01 | MsG0880046020.01 | 0.804556 | 2.040948e-49 | 1.055523e-46 |
| MsG0080048113.01 | MsG0880046122.01 | 0.825346 | 4.927904e-54 | 4.479943e-51 |
| MsG0080048113.01 | MsG0880046631.01 | 0.813024 | 3.155175e-51 | 2.037387e-48 |
| MsG0080048113.01 | MsG0880047427.01 | 0.801601 | 8.336916e-49 | 3.997597e-46 |
| MsG0080048113.01 | MsG0880047472.01 | 0.811215 | 7.825943e-51 | 4.815920e-48 |
| MsG0080048113.01 | MsG0880047473.01 | 0.818960 | 1.492204e-52 | 1.133311e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTACGATGCTTGTTATTT+TGG | 0.166397 | contig211end:-469 | MsG0080048113.01.T01:three_prime_UTR |
| TGAAATAAATTGAATACTAT+TGG | 0.224630 | contig211end:+295 | None:intergenic |
| GAAAATTCTAGTTTAGACTA+TGG | 0.287489 | contig211end:-496 | MsG0080048113.01.T01:three_prime_UTR |
| GAAATAAATTGAATACTATT+GGG | 0.333612 | contig211end:+296 | None:intergenic |
| GACATCATCAAGACAGTTCC+TGG | 0.394800 | contig211end:-584 | MsG0080048113.01.T01:CDS |
| TTTGCGGCCACCATTGTTGA+AGG | 0.420354 | contig211end:+2263 | None:intergenic |
| TTACTCAATGCTCAATCAGC+TGG | 0.426863 | contig211end:+441 | None:intergenic |
| GGCCACCATTGTTGAAGGTT+TGG | 0.449324 | contig211end:+2268 | None:intergenic |
| AATTACCTTTGGAACTCCTA+AGG | 0.463721 | contig211end:+2046 | None:intergenic |
| TGCCTCAGCATTGTTGATCC+TGG | 0.466033 | contig211end:-696 | MsG0080048113.01.T01:intron |
| AACATAGAATTGAAAACTCA+TGG | 0.469063 | contig211end:+537 | None:intergenic |
| GAAGCTTACGGTCTTCTTTG+CGG | 0.470686 | contig211end:+2247 | None:intergenic |
| TGTTGACTTGGCACTGCTTG+TGG | 0.471947 | contig211end:-738 | MsG0080048113.01.T01:CDS |
| TCATGAGAGCACATCACAAC+AGG | 0.473544 | contig211end:-2126 | MsG0080048113.01.T01:CDS |
| CTTTACGTTTACTGATCTCC+AGG | 0.475814 | contig211end:+566 | None:intergenic |
| ATTACCTTTGGAACTCCTAA+GGG | 0.478678 | contig211end:+2047 | None:intergenic |
| AAAGTGTAAACACTGCCTCT+AGG | 0.491840 | contig211end:+2330 | None:intergenic |
| AAAATTCTAGTTTAGACTAT+GGG | 0.495425 | contig211end:-495 | MsG0080048113.01.T01:three_prime_UTR |
| GCTTAGTTTGATGATTGCTA+TGG | 0.496618 | contig211end:-943 | MsG0080048113.01.T01:CDS |
| TCTAGTTTAGACTATGGGTA+CGG | 0.510235 | contig211end:-490 | MsG0080048113.01.T01:three_prime_UTR |
| AAACTGTTCTCAAATCCCTT+AGG | 0.514891 | contig211end:-2062 | MsG0080048113.01.T01:CDS |
| TGAAGAGTGGAAATATACCC+TGG | 0.520988 | contig211end:-2090 | MsG0080048113.01.T01:CDS |
| TAGTATTCAATTTATTTCAG+TGG | 0.522114 | contig211end:-291 | MsG0080048113.01.T01:three_prime_UTR |
| CTCGCTCTTGTCATGAAGAG+TGG | 0.545906 | contig211end:-2103 | MsG0080048113.01.T01:CDS |
| ATAGTAACAAGTGCTGATCA+AGG | 0.550433 | contig211end:+916 | None:intergenic |
| TACTCAATGCTCAATCAGCT+GGG | 0.550544 | contig211end:+442 | None:intergenic |
| CTAGTTTAGACTATGGGTAC+GGG | 0.560538 | contig211end:-489 | MsG0080048113.01.T01:three_prime_UTR |
| CTATATAGAAATTAGAAACA+TGG | 0.570635 | contig211end:+398 | None:intergenic |
| TATCATAGACAATGTTGACT+TGG | 0.578483 | contig211end:-750 | MsG0080048113.01.T01:intron |
| TCACACCAAACCTTCAACAA+TGG | 0.594420 | contig211end:-2273 | MsG0080048113.01.T01:exon |
| AGGAACTGTCTTGATGATGT+CGG | 0.599851 | contig211end:+586 | None:intergenic |
| TATTCAATTTATTTCAGTGG+AGG | 0.601690 | contig211end:-288 | MsG0080048113.01.T01:three_prime_UTR |
| ACATAGAATTGAAAACTCAT+GGG | 0.602698 | contig211end:+538 | None:intergenic |
| AAATCCCTTAGGAGTTCCAA+AGG | 0.605938 | contig211end:-2051 | MsG0080048113.01.T01:intron |
| CACCAAACCTTCAACAATGG+TGG | 0.615697 | contig211end:-2270 | MsG0080048113.01.T01:exon |
| GAAGAGTGGAAATATACCCT+GGG | 0.633856 | contig211end:-2089 | MsG0080048113.01.T01:CDS |
| TACCAGGATCAACAATGCTG+AGG | 0.662178 | contig211end:+694 | None:intergenic |
| GATGCGCAGAGAAGAAAATG+CGG | 0.718290 | contig211end:+2296 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTGAAAAAATATTATACAT+GGG | - | contig211end:1374-1393 | MsG0080048113.01.T01:intron | 15.0% |
| !! | GAAATAAATTGAATACTATT+GGG | + | contig211end:2316-2335 | None:intergenic | 15.0% |
| !! | TACTGAAAAAATATTATACA+TGG | - | contig211end:1373-1392 | MsG0080048113.01.T01:intron | 15.0% |
| !! | TGAAATAAATTGAATACTAT+TGG | + | contig211end:2317-2336 | None:intergenic | 15.0% |
| !!! | AACTTTATTTTATAAGATTC+TGG | - | contig211end:1447-1466 | MsG0080048113.01.T01:intron | 15.0% |
| !! | ATACATATTTCAACAACAAA+TGG | + | contig211end:597-616 | None:intergenic | 20.0% |
| !! | ATTGAAAAATTAATGACACA+GGG | + | contig211end:982-1001 | None:intergenic | 20.0% |
| !! | CCAAATAACAAATAAATTAG+AGG | + | contig211end:1988-2007 | None:intergenic | 20.0% |
| !! | CTATATAGAAATTAGAAACA+TGG | + | contig211end:2214-2233 | None:intergenic | 20.0% |
| !! | TAGTATTCAATTTATTTCAG+TGG | - | contig211end:2318-2337 | MsG0080048113.01.T01:five_prime_UTR | 20.0% |
| !! | TATGTTTGGATTAATGATAT+CGG | + | contig211end:1217-1236 | None:intergenic | 20.0% |
| !! | TGGATAAAAAAAATTACCTT+TGG | + | contig211end:577-596 | None:intergenic | 20.0% |
| !! | TGTTGAAAGAATATTATACA+TGG | - | contig211end:1319-1338 | MsG0080048113.01.T01:intron | 20.0% |
| !! | TTAATCCAAACATAATGTTA+TGG | - | contig211end:1223-1242 | MsG0080048113.01.T01:intron | 20.0% |
| !!! | AAAATTCTAGTTTAGACTAT+GGG | - | contig211end:2114-2133 | MsG0080048113.01.T01:CDS | 20.0% |
| !!! | AATATTTTTTCAGTATGACA+GGG | + | contig211end:1368-1387 | None:intergenic | 20.0% |
| !!! | AGCTAGTTATACTTTAAAAA+TGG | - | contig211end:1159-1178 | MsG0080048113.01.T01:intron | 20.0% |
| !!! | CCTCTAATTTATTTGTTATT+TGG | - | contig211end:1985-2004 | MsG0080048113.01.T01:intron | 20.0% |
| !!! | GATTTTGATTTGTTATTGTA+GGG | - | contig211end:832-851 | MsG0080048113.01.T01:intron | 20.0% |
| !!! | TAATATTTTTTCAGTATGAC+AGG | + | contig211end:1369-1388 | None:intergenic | 20.0% |
| !!! | TATAATTTTCTATCAGTAGT+TGG | - | contig211end:1491-1510 | MsG0080048113.01.T01:intron | 20.0% |
| !!! | TGATTTTGATTTGTTATTGT+AGG | - | contig211end:831-850 | MsG0080048113.01.T01:intron | 20.0% |
| !!! | TTATTTGATGATTATGCATA+TGG | - | contig211end:1618-1637 | MsG0080048113.01.T01:intron | 20.0% |
| !!! | TTGATTGAATTAAGTGATTT+TGG | - | contig211end:775-794 | MsG0080048113.01.T01:intron | 20.0% |
| !!! | TTTGTTGTTGAAATATGTAT+TGG | - | contig211end:597-616 | MsG0080048113.01.T01:intron | 20.0% |
| ! | AAATAAGTGATTAGTGAAAG+TGG | - | contig211end:729-748 | MsG0080048113.01.T01:CDS | 25.0% |
| ! | AACATAGAATTGAAAACTCA+TGG | + | contig211end:2075-2094 | None:intergenic | 25.0% |
| ! | ACATAGAATTGAAAACTCAT+GGG | + | contig211end:2074-2093 | None:intergenic | 25.0% |
| ! | ATGTTTGGATTAATGATATC+GGG | + | contig211end:1216-1235 | None:intergenic | 25.0% |
| ! | CATTGAAAAATTAATGACAC+AGG | + | contig211end:983-1002 | None:intergenic | 25.0% |
| ! | TAGAATGAAATGAAATGTAG+TGG | - | contig211end:1119-1138 | MsG0080048113.01.T01:intron | 25.0% |
| ! | TATGAATTGATTAGATTGCA+AGG | - | contig211end:642-661 | MsG0080048113.01.T01:intron | 25.0% |
| ! | TATGATTTCGTTCAGATTTA+GGG | - | contig211end:413-432 | MsG0080048113.01.T01:three_prime_UTR | 25.0% |
| ! | TATTCAATTTATTTCAGTGG+AGG | - | contig211end:2321-2340 | MsG0080048113.01.T01:five_prime_UTR | 25.0% |
| ! | TTATGATTTCGTTCAGATTT+AGG | - | contig211end:412-431 | MsG0080048113.01.T01:three_prime_UTR | 25.0% |
| !! | AAACAACTTTTCCATTGTAA+TGG | + | contig211end:943-962 | None:intergenic | 25.0% |
| !! | TACATTAACAGAAGCATATT+TGG | + | contig211end:1549-1568 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTTGGTGTTTTC+AGG | - | contig211end:1995-2014 | MsG0080048113.01.T01:intron | 25.0% |
| !!! | GAAAATTCTAGTTTAGACTA+TGG | - | contig211end:2113-2132 | MsG0080048113.01.T01:CDS | 25.0% |
| !!! | TGAAATGTAGTGGATTAAAA+TGG | - | contig211end:1129-1148 | MsG0080048113.01.T01:intron | 25.0% |
| AATTATTGCATGTGACCATA+AGG | + | contig211end:1276-1295 | None:intergenic | 30.0% | |
| AATTGAGTACTATGCTATGT+TGG | - | contig211end:902-921 | MsG0080048113.01.T01:intron | 30.0% | |
| ATTATTGCATGTGACCATAA+GGG | + | contig211end:1275-1294 | None:intergenic | 30.0% | |
| ATTGTGTATGTATACCCTTA+TGG | - | contig211end:1258-1277 | MsG0080048113.01.T01:intron | 30.0% | |
| ATTGTTATCTCCAAATCGTT+GGG | - | contig211end:1725-1744 | MsG0080048113.01.T01:intron | 30.0% | |
| TACTGAATGAAAGAAGCTTA+CGG | + | contig211end:377-396 | None:intergenic | 30.0% | |
| TATTGTTATCTCCAAATCGT+TGG | - | contig211end:1724-1743 | MsG0080048113.01.T01:intron | 30.0% | |
| TGTGACCATAACATTATGTT+TGG | + | contig211end:1231-1250 | None:intergenic | 30.0% | |
| TTAAGAAAGCAACATATACC+AGG | + | contig211end:1934-1953 | None:intergenic | 30.0% | |
| ! | TATCATAGACAATGTTGACT+TGG | - | contig211end:1859-1878 | MsG0080048113.01.T01:intron | 30.0% |
| !! | GTTGTAGATTGATTTTGTAG+TGG | - | contig211end:706-725 | MsG0080048113.01.T01:CDS | 30.0% |
| !! | TTCAATGTTGATAGCATTCA+GGG | - | contig211end:996-1015 | MsG0080048113.01.T01:intron | 30.0% |
| !! | TTTCAATGTTGATAGCATTC+AGG | - | contig211end:995-1014 | MsG0080048113.01.T01:intron | 30.0% |
| !! | TTTGAATGTTGATTTGGTAG+TGG | - | contig211end:801-820 | MsG0080048113.01.T01:intron | 30.0% |
| !!! | TGGAGTTTTGAATGTTGATT+TGG | - | contig211end:795-814 | MsG0080048113.01.T01:intron | 30.0% |
| AAACTGTTCTCAAATCCCTT+AGG | - | contig211end:547-566 | MsG0080048113.01.T01:CDS | 35.0% | |
| ATAGCATTCAGGGATTGTTT+AGG | - | contig211end:1006-1025 | MsG0080048113.01.T01:intron | 35.0% | |
| ATTAATGACACAGGGAAGTA+AGG | + | contig211end:974-993 | None:intergenic | 35.0% | |
| TAAGAAGAATCCCAACGATT+TGG | + | contig211end:1738-1757 | None:intergenic | 35.0% | |
| TCAATTTCAGACTTCCTCAA+AGG | + | contig211end:888-907 | None:intergenic | 35.0% | |
| TTTCTATCAGTAGTTGGATG+TGG | - | contig211end:1497-1516 | MsG0080048113.01.T01:intron | 35.0% | |
| TTTGGATTAATGATATCGGG+TGG | + | contig211end:1213-1232 | None:intergenic | 35.0% | |
| ! | CAGAAGCATATTTGGAAACA+AGG | + | contig211end:1541-1560 | None:intergenic | 35.0% |
| ! | GCTTAGTTTGATGATTGCTA+TGG | - | contig211end:1666-1685 | MsG0080048113.01.T01:intron | 35.0% |
| ! | TCTAGTTTAGACTATGGGTA+CGG | - | contig211end:2119-2138 | MsG0080048113.01.T01:CDS | 35.0% |
| ! | TCTGTTATCAGTTGACTCTA+AGG | - | contig211end:1783-1802 | MsG0080048113.01.T01:intron | 35.0% |
| !! | AATTACCTTTGGAACTCCTA+AGG | + | contig211end:566-585 | None:intergenic | 35.0% |
| !! | ATAGTAACAAGTGCTGATCA+AGG | + | contig211end:1696-1715 | None:intergenic | 35.0% |
| !! | ATTACCTTTGGAACTCCTAA+GGG | + | contig211end:565-584 | None:intergenic | 35.0% |
| !! | TGAGAACAGTTTTATACCCA+GGG | + | contig211end:539-558 | None:intergenic | 35.0% |
| !! | TTGAGAACAGTTTTATACCC+AGG | + | contig211end:540-559 | None:intergenic | 35.0% |
| !!! | GGTACGATGCTTGTTATTTT+GGG | - | contig211end:2141-2160 | MsG0080048113.01.T01:intron | 35.0% |
| AAATCCCTTAGGAGTTCCAA+AGG | - | contig211end:558-577 | MsG0080048113.01.T01:CDS | 40.0% | |
| AAATGACACTACTGTACGAC+AGG | + | contig211end:1422-1441 | None:intergenic | 40.0% | |
| AATGACACTACTGTACGACA+GGG | + | contig211end:1421-1440 | None:intergenic | 40.0% | |
| ATTTCAGACTTCCTCAAAGG+AGG | + | contig211end:885-904 | None:intergenic | 40.0% | |
| CTAGTTTAGACTATGGGTAC+GGG | - | contig211end:2120-2139 | MsG0080048113.01.T01:CDS | 40.0% | |
| CTTTACGTTTACTGATCTCC+AGG | + | contig211end:2046-2065 | None:intergenic | 40.0% | |
| GAAGAGTGGAAATATACCCT+GGG | - | contig211end:520-539 | MsG0080048113.01.T01:exon | 40.0% | |
| GTTGGAGTTCACCATTACAA+TGG | - | contig211end:929-948 | MsG0080048113.01.T01:CDS | 40.0% | |
| TACTCAATGCTCAATCAGCT+GGG | + | contig211end:2170-2189 | None:intergenic | 40.0% | |
| TCACACCAAACCTTCAACAA+TGG | - | contig211end:336-355 | MsG0080048113.01.T01:three_prime_UTR | 40.0% | |
| TCAGCTAGCTAGAATCAATC+AGG | + | contig211end:1077-1096 | None:intergenic | 40.0% | |
| TGAAGAGTGGAAATATACCC+TGG | - | contig211end:519-538 | MsG0080048113.01.T01:exon | 40.0% | |
| TTACTCAATGCTCAATCAGC+TGG | + | contig211end:2171-2190 | None:intergenic | 40.0% | |
| ! | AGTACTATGCTATGTTGGCT+AGG | - | contig211end:907-926 | MsG0080048113.01.T01:CDS | 40.0% |
| ! | TGAGCTTTAGTGTGTATCAG+TGG | - | contig211end:1094-1113 | MsG0080048113.01.T01:intron | 40.0% |
| !! | AGGAACTGTCTTGATGATGT+CGG | + | contig211end:2026-2045 | None:intergenic | 40.0% |
| !!! | GGGTACGATGCTTGTTATTT+TGG | - | contig211end:2140-2159 | MsG0080048113.01.T01:intron | 40.0% |
| CACCAAACCTTCAACAATGG+TGG | - | contig211end:339-358 | MsG0080048113.01.T01:three_prime_UTR | 45.0% | |
| CTAACAACTGTCCTCCTTTG+AGG | - | contig211end:871-890 | MsG0080048113.01.T01:intron | 45.0% | |
| GAAGCTTACGGTCTTCTTTG+CGG | + | contig211end:365-384 | None:intergenic | 45.0% | |
| GACATCATCAAGACAGTTCC+TGG | - | contig211end:2025-2044 | MsG0080048113.01.T01:intron | 45.0% | |
| GATGCGCAGAGAAGAAAATG+CGG | + | contig211end:316-335 | None:intergenic | 45.0% | |
| TACCAGGATCAACAATGCTG+AGG | + | contig211end:1918-1937 | None:intergenic | 45.0% | |
| ! | CTATGCTATGTTGGCTAGGT+TGG | - | contig211end:911-930 | MsG0080048113.01.T01:CDS | 45.0% |
| ! | TCATGAGAGCACATCACAAC+AGG | - | contig211end:483-502 | MsG0080048113.01.T01:three_prime_UTR | 45.0% |
| CTCGCTCTTGTCATGAAGAG+TGG | - | contig211end:506-525 | MsG0080048113.01.T01:three_prime_UTR | 50.0% | |
| GGCCACCATTGTTGAAGGTT+TGG | + | contig211end:344-363 | None:intergenic | 50.0% | |
| TGCCTCAGCATTGTTGATCC+TGG | - | contig211end:1913-1932 | MsG0080048113.01.T01:intron | 50.0% | |
| TTTGCGGCCACCATTGTTGA+AGG | + | contig211end:349-368 | None:intergenic | 50.0% | |
| !! | TGTTGACTTGGCACTGCTTG+TGG | - | contig211end:1871-1890 | MsG0080048113.01.T01:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig211end | gene | 282 | 2349 | 282 | ID=MsG0080048113.01;Name=MsG0080048113.01 |
| contig211end | mRNA | 282 | 2349 | 282 | ID=MsG0080048113.01.T01;Parent=MsG0080048113.01;Name=MsG0080048113.01.T01;_AED=0.31;_eAED=0.31;_QI=73|0.5|0.8|0.8|0.25|0.4|5|249|119 |
| contig211end | exon | 2256 | 2349 | 2256 | ID=MsG0080048113.01.T01:exon:26416;Parent=MsG0080048113.01.T01 |
| contig211end | exon | 2052 | 2156 | 2052 | ID=MsG0080048113.01.T01:exon:26417;Parent=MsG0080048113.01.T01 |
| contig211end | exon | 904 | 985 | 904 | ID=MsG0080048113.01.T01:exon:26418;Parent=MsG0080048113.01.T01 |
| contig211end | exon | 697 | 764 | 697 | ID=MsG0080048113.01.T01:exon:26419;Parent=MsG0080048113.01.T01 |
| contig211end | exon | 282 | 614 | 282 | ID=MsG0080048113.01.T01:exon:26420;Parent=MsG0080048113.01.T01 |
| contig211end | five_prime_UTR | 2277 | 2349 | 2277 | ID=MsG0080048113.01.T01:five_prime_utr;Parent=MsG0080048113.01.T01 |
| contig211end | CDS | 2256 | 2276 | 2256 | ID=MsG0080048113.01.T01:cds;Parent=MsG0080048113.01.T01 |
| contig211end | CDS | 2052 | 2156 | 2052 | ID=MsG0080048113.01.T01:cds;Parent=MsG0080048113.01.T01 |
| contig211end | CDS | 904 | 985 | 904 | ID=MsG0080048113.01.T01:cds;Parent=MsG0080048113.01.T01 |
| contig211end | CDS | 697 | 764 | 697 | ID=MsG0080048113.01.T01:cds;Parent=MsG0080048113.01.T01 |
| contig211end | CDS | 531 | 614 | 531 | ID=MsG0080048113.01.T01:cds;Parent=MsG0080048113.01.T01 |
| contig211end | three_prime_UTR | 282 | 530 | 282 | ID=MsG0080048113.01.T01:three_prime_utr;Parent=MsG0080048113.01.T01 |
| Gene Sequence |
| Protein sequence |
