AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025707.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025707.01.T01 MTR_3g102830 91.200 125 11 0 1 125 109 233 3.82e-56 203
MsG0580025707.01.T01 MTR_3g498725 91.200 125 11 0 1 125 104 228 7.23e-56 202
MsG0580025707.01.T01 MTR_8g100040 91.200 125 11 0 1 125 108 232 8.81e-56 202
MsG0580025707.01.T01 MTR_8g100040 42.708 96 45 2 33 126 71 158 3.60e-11 66.6
MsG0580025707.01.T01 MTR_4g051480 56.684 187 64 3 124 306 669 842 1.08e-55 201
MsG0580025707.01.T01 MTR_4g092300 56.684 187 64 3 124 306 651 824 1.14e-55 201
MsG0580025707.01.T01 MTR_8g085310 52.128 188 77 3 124 307 529 707 1.90e-50 184
MsG0580025707.01.T01 MTR_1g076440 76.636 107 25 0 21 127 7 113 2.28e-44 159
MsG0580025707.01.T01 MTR_1g094760 51.149 174 70 3 137 307 539 700 6.35e-43 163
MsG0580025707.01.T01 MTR_3g053640 44.324 185 74 3 124 308 277 432 1.53e-37 144
MsG0580025707.01.T01 MTR_3g461000 42.969 128 70 1 1 125 14 141 3.62e-24 107
MsG0580025707.01.T01 MTR_2g017975 93.878 49 3 0 495 543 1 49 4.21e-23 97.1
MsG0580025707.01.T01 MTR_3g019060 34.161 161 71 4 148 307 5 131 8.15e-18 80.5
MsG0580025707.01.T01 MTR_7g056633 40.860 93 54 1 328 419 32 124 6.17e-16 75.1
MsG0580025707.01.T01 MTR_8g463880 44.048 84 47 0 328 411 64 147 9.14e-16 75.1
MsG0580025707.01.T01 MTR_4g117120 28.085 235 133 6 307 513 132 358 1.62e-15 79.0
MsG0580025707.01.T01 MTR_4g055725 33.898 118 78 0 311 428 61 178 2.86e-14 73.6
MsG0580025707.01.T01 MTR_4g117940 34.532 139 87 2 294 428 37 175 1.42e-13 69.7
MsG0580025707.01.T01 MTR_5g063300 37.805 82 51 0 331 412 53 134 2.99e-11 62.0
MsG0580025707.01.T01 MTR_8g073195 34.821 112 65 1 436 547 43 146 5.26e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025707.01.T01 AT5G50920 90.400 125 12 0 1 125 107 231 2.16e-55 201
MsG0580025707.01.T01 AT3G48870 88.800 125 14 0 1 125 96 220 1.78e-54 198
MsG0580025707.01.T01 AT3G48870 88.800 125 14 0 1 125 127 251 2.99e-54 197
MsG0580025707.01.T01 AT3G48870 88.800 125 14 0 1 125 127 251 2.99e-54 197
MsG0580025707.01.T01 AT3G48870 88.800 125 14 0 1 125 127 251 2.99e-54 197
MsG0580025707.01.T01 AT3G45450 62.400 125 30 2 2 126 15 122 5.38e-34 132
MsG0580025707.01.T01 AT5G41980 38.793 116 69 1 313 428 27 140 2.66e-18 87.4
MsG0580025707.01.T01 AT5G28730 34.167 120 75 1 315 430 11 130 1.25e-12 69.3
MsG0580025707.01.T01 AT1G43722 32.174 115 74 1 321 431 59 173 6.98e-12 67.4

Find 121 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCCTTGGAAAAGTTTA+AGG 0.162686 5:+23095188 MsG0580025707.01.T01:CDS
GGTACAGGCACTCGTCTTTA+AGG 0.164441 5:+23096021 MsG0580025707.01.T01:CDS
CTTCCACGCGAGCGTCTTTC+AGG 0.184946 5:-23093831 None:intergenic
GCTACATTCTTATTCATAAT+TGG 0.187169 5:+23095825 MsG0580025707.01.T01:CDS
AGCATGTGTTCTTGAAAATT+TGG 0.190484 5:+23094436 MsG0580025707.01.T01:CDS
ATGACAATTGAGAGCTGTTT+TGG 0.225916 5:+23096044 MsG0580025707.01.T01:CDS
CTGTACCAAGGATAATATTT+TGG 0.233821 5:-23096005 None:intergenic
GACATTTCAGATGATTCTTA+TGG 0.247293 5:+23095165 MsG0580025707.01.T01:CDS
GAAGGCATTAACTTTAAAAT+AGG 0.275689 5:-23096086 None:intergenic
GTAATTTCAAGGAAGTATTA+TGG 0.288396 5:+23095910 MsG0580025707.01.T01:CDS
GGATTATTCTTAATTCTATT+AGG 0.298158 5:-23095984 None:intergenic
CTGATGAGTTGTTTAGGATA+TGG 0.305343 5:+23096186 MsG0580025707.01.T01:CDS
TTTGTTGCTGAAGTGTTAAA+TGG 0.310227 5:+23095678 MsG0580025707.01.T01:CDS
ACCATGGGCTCAAGTTTCTT+TGG 0.312180 5:+23095038 MsG0580025707.01.T01:CDS
CGGAACTGAGCACCTGCTTT+TGG 0.313782 5:+23094385 MsG0580025707.01.T01:CDS
TTTCTGTGGAATGTTGAAAA+AGG 0.316026 5:-23095878 None:intergenic
CATCTGTGTTTGGTGGGTCT+TGG 0.324547 5:-23094834 None:intergenic
TCCACGTGCCAAGAGAGTTT+TGG 0.338458 5:+23093909 MsG0580025707.01.T01:CDS
TTTCTAGGTCATAATTATAT+CGG 0.351909 5:+23094365 MsG0580025707.01.T01:intron
ATGTGATGTAGACTCCTTCT+TGG 0.355967 5:-23094995 None:intergenic
AAGAGGACGCTAGGCGGCTT+GGG 0.359366 5:+23093716 MsG0580025707.01.T01:CDS
ACTGATAAAGCAAGAGTCTA+TGG 0.364175 5:+23095956 MsG0580025707.01.T01:CDS
GTTTAGGATATGGGAGGAAA+TGG 0.375765 5:+23096196 MsG0580025707.01.T01:CDS
CTCTTGGCACGTGGAGTAAT+CGG 0.379956 5:-23093901 None:intergenic
GCATGTGTTCTTGAAAATTT+GGG 0.381266 5:+23094437 MsG0580025707.01.T01:CDS
TTAACAAGGTTATCTGATAA+AGG 0.382057 5:+23096287 MsG0580025707.01.T01:CDS
CAAGAGGACGCTAGGCGGCT+TGG 0.386803 5:+23093715 MsG0580025707.01.T01:CDS
GGTACTTCTTCGAGAGGGTA+AGG 0.395365 5:+23094406 MsG0580025707.01.T01:CDS
ATTTGCCTGATGAGTTGTTT+AGG 0.395717 5:+23096180 MsG0580025707.01.T01:CDS
TTATGGGCAGTGTGTCAATT+AGG 0.395888 5:+23095927 MsG0580025707.01.T01:CDS
ATCTGTGTTTGGTGGGTCTT+GGG 0.396541 5:-23094833 None:intergenic
TCTTTGCCTTGAAGGTTTGT+AGG 0.399596 5:-23096108 None:intergenic
CATCCATGTTTCCTCTCATT+AGG 0.399706 5:-23095243 None:intergenic
ACTATGAGTCTTTGCCTTGA+AGG 0.404813 5:-23096116 None:intergenic
CATTCGAGCTCATCCCTTCA+AGG 0.405495 5:-23096256 None:intergenic
TAATTTCAAGGAAGTATTAT+GGG 0.420612 5:+23095911 MsG0580025707.01.T01:CDS
TGCCTTCCTACAAACCTTCA+AGG 0.421938 5:+23096102 MsG0580025707.01.T01:CDS
AACAATCTCGCGTAATTTCA+AGG 0.428893 5:+23095899 MsG0580025707.01.T01:CDS
AACGAGGTTTCTAACCTTGA+AGG 0.429613 5:+23096242 MsG0580025707.01.T01:CDS
AAAAGTTTAAGGATTCTGAT+TGG 0.433232 5:+23095199 MsG0580025707.01.T01:CDS
TGCTAAGGTTCTAAAGCCTA+TGG 0.433554 5:+23093801 MsG0580025707.01.T01:CDS
GCGTGACCATTACAAGTTGC+CGG 0.435957 5:+23094759 MsG0580025707.01.T01:CDS
ATTGGTGAAGGCACTGGTAT+TGG 0.438124 5:+23093778 MsG0580025707.01.T01:CDS
TGATTTCCGGCAACTTGTAA+TGG 0.438745 5:-23094765 None:intergenic
GCTGCACAATTTCAAAAGAA+AGG 0.439878 5:+23094736 MsG0580025707.01.T01:CDS
TTTCTTTGGCAAGAGCTGAT+AGG 0.441142 5:+23095052 MsG0580025707.01.T01:CDS
AACGTTGTTGTTTACCAAGC+TGG 0.447147 5:-23093954 None:intergenic
TGATGAGTTGTTTAGGATAT+GGG 0.451418 5:+23096187 MsG0580025707.01.T01:CDS
ATGATCAATACATTAACAAT+GGG 0.467149 5:+23094872 MsG0580025707.01.T01:CDS
CATATCCTAAACAACTCATC+AGG 0.467175 5:-23096185 None:intergenic
GGTCTTATTGGTGAAGGCAC+TGG 0.469001 5:+23093772 MsG0580025707.01.T01:CDS
CAAAATATTATCCTTGGTAC+AGG 0.472748 5:+23096006 MsG0580025707.01.T01:CDS
GCTGAAGTGTTAAATGGGTC+TGG 0.477010 5:+23095684 MsG0580025707.01.T01:CDS
AAGATAATCGGAAGGGGTAG+TGG 0.478221 5:+23093859 MsG0580025707.01.T01:CDS
ATAGGAATCATCTTAGAGAT+AGG 0.479459 5:+23096330 MsG0580025707.01.T01:CDS
AGCTATTATGTTGGCTCAAG+AGG 0.482651 5:+23093699 None:intergenic
CTGATAGGTTAAGAAGGGAT+AGG 0.484536 5:+23095067 MsG0580025707.01.T01:CDS
GGCTACTTTGCGTGTAACTT+CGG 0.489699 5:+23095098 MsG0580025707.01.T01:CDS
ATAATCCAAAATATTATCCT+TGG 0.490418 5:+23096000 MsG0580025707.01.T01:CDS
TGCGAGTTCCAAAACTCTCT+TGG 0.491837 5:-23093917 None:intergenic
GTTTAAGGATTCTGATTGGA+GGG 0.496068 5:+23095203 MsG0580025707.01.T01:CDS
CTGCACAATTTCAAAAGAAA+GGG 0.498238 5:+23094737 MsG0580025707.01.T01:CDS
ATCATCTTAGAGATAGGATG+TGG 0.498557 5:+23096336 MsG0580025707.01.T01:CDS
GAATGAGGCACTTGCACCAT+GGG 0.503744 5:+23095023 MsG0580025707.01.T01:CDS
TAATCATGTGCATGTTGATA+AGG 0.505514 5:+23094900 MsG0580025707.01.T01:CDS
GTGGAAGTCGAAAAGATAAT+CGG 0.506660 5:+23093847 MsG0580025707.01.T01:CDS
TGATTCTTATGGAAAAGCCT+TGG 0.511001 5:+23095176 MsG0580025707.01.T01:CDS
TGATAAAGGTGCAGCTGAGA+TGG 0.511525 5:+23096301 MsG0580025707.01.T01:CDS
TTGTTGCTGAAGTGTTAAAT+GGG 0.511600 5:+23095679 MsG0580025707.01.T01:CDS
TTCACAATTACATACGTAAG+TGG 0.512716 5:+23096156 MsG0580025707.01.T01:CDS
ATCGAGAGCAGCCACACCCT+TGG 0.514902 5:-23095133 None:intergenic
TGCCTTGAAGGTTTGTAGGA+AGG 0.520257 5:-23096104 None:intergenic
CAAGAGCTGATAGGTTAAGA+AGG 0.522286 5:+23095061 MsG0580025707.01.T01:CDS
CTTGAGGAAGCTCGCCAGCT+TGG 0.525612 5:+23093940 MsG0580025707.01.T01:CDS
ACCTGGGTGCGAATAGTAGT+TGG 0.531008 5:-23094467 None:intergenic
ATTACGCGAGATTGTTTCTG+TGG 0.534044 5:-23095892 None:intergenic
GCCAAAGAAACTTGAGCCCA+TGG 0.543369 5:-23095039 None:intergenic
TTGTTGGGTCTTATTGGTGA+AGG 0.545049 5:+23093766 MsG0580025707.01.T01:CDS
AGGCACTGGTATTGGTGCTA+AGG 0.545166 5:+23093786 MsG0580025707.01.T01:CDS
TTTCGTCATCTGTGTTTGGT+GGG 0.546044 5:-23094840 None:intergenic
GTACTTCTTCGAGAGGGTAA+GGG 0.554523 5:+23094407 MsG0580025707.01.T01:CDS
GATGATCAATACATTAACAA+TGG 0.560589 5:+23094871 MsG0580025707.01.T01:CDS
CTCGAAGAAGTACCAAAAGC+AGG 0.562271 5:-23094397 None:intergenic
TAACCTGAAAGACGCTCGCG+TGG 0.566475 5:+23093828 MsG0580025707.01.T01:CDS
TTCAGCAACAAACTCACGAC+CGG 0.569696 5:-23095667 None:intergenic
AGTTTAAGGATTCTGATTGG+AGG 0.570217 5:+23095202 MsG0580025707.01.T01:CDS
GCTAAGGTTCTAAAGCCTAT+GGG 0.571286 5:+23093802 MsG0580025707.01.T01:CDS
CAGCTGAGATGGCAATGGAT+AGG 0.572746 5:+23096312 MsG0580025707.01.T01:CDS
TGTTGGCTCAAGAGGACGCT+AGG 0.573089 5:+23093707 MsG0580025707.01.T01:CDS
ACGAGGTTTCTAACCTTGAA+GGG 0.580533 5:+23096243 MsG0580025707.01.T01:CDS
CGAATGTTGAAAACTTAACA+AGG 0.583345 5:+23096273 MsG0580025707.01.T01:CDS
ATGTTTCCTCTCATTAGGCA+TGG 0.584859 5:-23095238 None:intergenic
CACACGCAGTGAAAAGCGAC+AGG 0.589154 5:+23094960 MsG0580025707.01.T01:CDS
AGGACTACTTATGTGACTCA+AGG 0.589528 5:+23095778 MsG0580025707.01.T01:CDS
TACATCACATCATATGAATG+AGG 0.591772 5:+23095008 MsG0580025707.01.T01:CDS
CTAATGAGAGGAAACATGGA+TGG 0.592932 5:+23095244 MsG0580025707.01.T01:CDS
ATGCCTAATGAGAGGAAACA+TGG 0.595137 5:+23095240 MsG0580025707.01.T01:CDS
AATGGATGATATAGAACTTG+AGG 0.599449 5:+23096214 MsG0580025707.01.T01:CDS
TCTTTCAGGTTAATTCCCAT+AGG 0.604076 5:-23093817 None:intergenic
TCCAAAACTCTCTTGGCACG+TGG 0.605862 5:-23093910 None:intergenic
AGGTGCAGCTGAGATGGCAA+TGG 0.608527 5:+23096307 MsG0580025707.01.T01:CDS
GGTTCATATGAGATCCAAGA+AGG 0.609352 5:+23094981 MsG0580025707.01.T01:CDS
AAGAGCTGATAGGTTAAGAA+GGG 0.615359 5:+23095062 MsG0580025707.01.T01:CDS
AGAACTTGAGGCGGTGAACG+AGG 0.618981 5:+23096226 MsG0580025707.01.T01:CDS
CTGTAATGAACTGAGAGGCA+AGG 0.627231 5:+23095758 MsG0580025707.01.T01:CDS
TGAGTTGTTTAGGATATGGG+AGG 0.628274 5:+23096190 MsG0580025707.01.T01:CDS
GTCGAAAAGATAATCGGAAG+GGG 0.629582 5:+23093853 MsG0580025707.01.T01:CDS
TGAATGAGGCACTTGCACCA+TGG 0.641027 5:+23095022 MsG0580025707.01.T01:CDS
TCCAACTACTATTCGCACCC+AGG 0.645263 5:+23094466 MsG0580025707.01.T01:CDS
AGTCGAAAAGATAATCGGAA+GGG 0.647109 5:+23093852 MsG0580025707.01.T01:CDS
AAGAAGGGATAGGAGTGCAG+AGG 0.647414 5:+23095077 MsG0580025707.01.T01:CDS
GGACTACTTATGTGACTCAA+GGG 0.649654 5:+23095779 MsG0580025707.01.T01:CDS
TAATGAGAGGAAACATGGAT+GGG 0.654899 5:+23095245 MsG0580025707.01.T01:CDS
AAGTCGAAAAGATAATCGGA+AGG 0.660952 5:+23093851 MsG0580025707.01.T01:CDS
CATGTGCATGTTGATAAGGA+TGG 0.670620 5:+23094904 MsG0580025707.01.T01:CDS
GGATGATATAGAACTTGAGG+CGG 0.673217 5:+23096217 MsG0580025707.01.T01:CDS
TTATCGCCATGCCTAATGAG+AGG 0.675722 5:+23095232 MsG0580025707.01.T01:CDS
TCATCTTAGAGATAGGATGT+GGG 0.679475 5:+23096337 MsG0580025707.01.T01:CDS
AAAGACGAGTGCCTGTACCA+AGG 0.690915 5:-23096017 None:intergenic
AATTTCTGTAATGAACTGAG+AGG 0.726306 5:+23095753 MsG0580025707.01.T01:CDS
TGGCTCAAGAGGACGCTAGG+CGG 0.758377 5:+23093710 MsG0580025707.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATAATCTATATTTGTTT+AGG + Chr5:23095283-23095302 MsG0580025707.01.T01:intron 15.0%
!! AAAATACTTTGACAAATCAA+AGG + Chr5:23095626-23095645 MsG0580025707.01.T01:intron 20.0%
!! ACTTATCTTAGTATTTGATT+AGG + Chr5:23095346-23095365 MsG0580025707.01.T01:intron 20.0%
!! ATAATCCAAAATATTATCCT+TGG + Chr5:23096000-23096019 MsG0580025707.01.T01:CDS 20.0%
!! ATGATCAATACATTAACAAT+GGG + Chr5:23094872-23094891 MsG0580025707.01.T01:CDS 20.0%
!! GGATTATTCTTAATTCTATT+AGG - Chr5:23095987-23096006 None:intergenic 20.0%
!! TTTCTAGGTCATAATTATAT+CGG + Chr5:23094365-23094384 MsG0580025707.01.T01:intron 20.0%
!!! CATTTTATGATTTAGAAAGA+TGG + Chr5:23094613-23094632 MsG0580025707.01.T01:intron 20.0%
!!! TAATTTCAAGGAAGTATTAT+GGG + Chr5:23095911-23095930 MsG0580025707.01.T01:CDS 20.0%
!!! TACAAAATTTTAATCACACT+CGG - Chr5:23094157-23094176 None:intergenic 20.0%
!!! TGAAATTTTGGCTTATATTT+TGG + Chr5:23094340-23094359 MsG0580025707.01.T01:intron 20.0%
!!! TTATTGTTACTTTGTATGAT+AGG + Chr5:23095499-23095518 MsG0580025707.01.T01:intron 20.0%
!!! TTTTTGTTGAATATGATTTC+CGG - Chr5:23094781-23094800 None:intergenic 20.0%
! AAAAGTTTAAGGATTCTGAT+TGG + Chr5:23095199-23095218 MsG0580025707.01.T01:CDS 25.0%
! AAACTCACTTTAACTCAAAT+TGG - Chr5:23094081-23094100 None:intergenic 25.0%
! ATAAAAGAAAAAGGAAAGGT+AGG - Chr5:23094133-23094152 None:intergenic 25.0%
! ATACAATGAGAATAACAGAA+AGG - Chr5:23094679-23094698 None:intergenic 25.0%
! GATGATCAATACATTAACAA+TGG + Chr5:23094871-23094890 MsG0580025707.01.T01:CDS 25.0%
! GCTACATTCTTATTCATAAT+TGG + Chr5:23095825-23095844 MsG0580025707.01.T01:CDS 25.0%
! TGATATGCATATATCATTTG+AGG + Chr5:23094702-23094721 MsG0580025707.01.T01:intron 25.0%
! TTAACAAGGTTATCTGATAA+AGG + Chr5:23096287-23096306 MsG0580025707.01.T01:CDS 25.0%
! TTCAACAAAAATAATGCAAC+TGG + Chr5:23094790-23094809 MsG0580025707.01.T01:CDS 25.0%
!! ATTAAAATTTTGTACCCATC+CGG + Chr5:23094163-23094182 MsG0580025707.01.T01:intron 25.0%
!! CTTTTGCTTATATTAATGAC+TGG + Chr5:23094294-23094313 MsG0580025707.01.T01:intron 25.0%
!!! ATTTCATTGATTCTCTTACT+TGG + Chr5:23094650-23094669 MsG0580025707.01.T01:intron 25.0%
!!! GAAGGCATTAACTTTAAAAT+AGG - Chr5:23096089-23096108 None:intergenic 25.0%
!!! GCTTATATTTTGGAATTTCT+AGG + Chr5:23094350-23094369 MsG0580025707.01.T01:intron 25.0%
!!! GTAATTTCAAGGAAGTATTA+TGG + Chr5:23095910-23095929 MsG0580025707.01.T01:CDS 25.0%
AAAAGCCTTGGAAAAGTTTA+AGG + Chr5:23095188-23095207 MsG0580025707.01.T01:CDS 30.0%
AAAGTCATCAATCTCGATTA+AGG - Chr5:23094549-23094568 None:intergenic 30.0%
AATGGATGATATAGAACTTG+AGG + Chr5:23096214-23096233 MsG0580025707.01.T01:CDS 30.0%
AATTTCTGTAATGAACTGAG+AGG + Chr5:23095753-23095772 MsG0580025707.01.T01:CDS 30.0%
ACACTCGGAATAAAAGAAAA+AGG - Chr5:23094142-23094161 None:intergenic 30.0%
ACTCGATAAGAGGAAAAAAA+AGG - Chr5:23095463-23095482 None:intergenic 30.0%
AGCATGTGTTCTTGAAAATT+TGG + Chr5:23094436-23094455 MsG0580025707.01.T01:CDS 30.0%
ATAACATGATACTCGATAAG+AGG - Chr5:23095473-23095492 None:intergenic 30.0%
ATAGGAATCATCTTAGAGAT+AGG + Chr5:23096330-23096349 MsG0580025707.01.T01:CDS 30.0%
ATCAATCAAAGCAACAATCA+AGG - Chr5:23094050-23094069 None:intergenic 30.0%
CAAAATATTATCCTTGGTAC+AGG + Chr5:23096006-23096025 MsG0580025707.01.T01:CDS 30.0%
CGAATGTTGAAAACTTAACA+AGG + Chr5:23096273-23096292 MsG0580025707.01.T01:CDS 30.0%
CGGAATAAAAGAAAAAGGAA+AGG - Chr5:23094137-23094156 None:intergenic 30.0%
CTGCACAATTTCAAAAGAAA+GGG + Chr5:23094737-23094756 MsG0580025707.01.T01:CDS 30.0%
GACATTTCAGATGATTCTTA+TGG + Chr5:23095165-23095184 MsG0580025707.01.T01:CDS 30.0%
GAGAGAAGTAAACAATCATA+AGG - Chr5:23095374-23095393 None:intergenic 30.0%
GCATGTGTTCTTGAAAATTT+GGG + Chr5:23094437-23094456 MsG0580025707.01.T01:CDS 30.0%
TAATCATGTGCATGTTGATA+AGG + Chr5:23094900-23094919 MsG0580025707.01.T01:CDS 30.0%
TACATCACATCATATGAATG+AGG + Chr5:23095008-23095027 MsG0580025707.01.T01:CDS 30.0%
TGCTTATATTAATGACTGGA+GGG + Chr5:23094298-23094317 MsG0580025707.01.T01:intron 30.0%
TTCACAATTACATACGTAAG+TGG + Chr5:23096156-23096175 MsG0580025707.01.T01:CDS 30.0%
TTGCTTATATTAATGACTGG+AGG + Chr5:23094297-23094316 MsG0580025707.01.T01:intron 30.0%
TTTCTGTGGAATGTTGAAAA+AGG - Chr5:23095881-23095900 None:intergenic 30.0%
! AGAATCCTTAAACTTTTCCA+AGG - Chr5:23095196-23095215 None:intergenic 30.0%
! CTGTACCAAGGATAATATTT+TGG - Chr5:23096008-23096027 None:intergenic 30.0%
! CTTTTGCTTATATTAGTGAC+CGG - Chr5:23094185-23094204 None:intergenic 30.0%
! GGAACAGAACAAATTTTGTT+GGG + Chr5:23093751-23093770 MsG0580025707.01.T01:CDS 30.0%
! TGATGAGTTGTTTAGGATAT+GGG + Chr5:23096187-23096206 MsG0580025707.01.T01:CDS 30.0%
! TTGTTGCTGAAGTGTTAAAT+GGG + Chr5:23095679-23095698 MsG0580025707.01.T01:CDS 30.0%
! TTTGTTGCTGAAGTGTTAAA+TGG + Chr5:23095678-23095697 MsG0580025707.01.T01:CDS 30.0%
!! CAAATTTTGTTGGGTCTTAT+TGG + Chr5:23093760-23093779 MsG0580025707.01.T01:CDS 30.0%
!! GTTTACGTTTGCTGAAATTT+TGG + Chr5:23094328-23094347 MsG0580025707.01.T01:intron 30.0%
!! TGCAAGTGATGATGAATTTT+TGG + Chr5:23095566-23095585 MsG0580025707.01.T01:intron 30.0%
!! TTTTTGGACTTTGTCATTTG+TGG + Chr5:23095582-23095601 MsG0580025707.01.T01:intron 30.0%
AACAATCTCGCGTAATTTCA+AGG + Chr5:23095899-23095918 MsG0580025707.01.T01:CDS 35.0%
AAGAGCTGATAGGTTAAGAA+GGG + Chr5:23095062-23095081 MsG0580025707.01.T01:CDS 35.0%
AAGTCGAAAAGATAATCGGA+AGG + Chr5:23093851-23093870 MsG0580025707.01.T01:CDS 35.0%
ACTGATAAAGCAAGAGTCTA+TGG + Chr5:23095956-23095975 MsG0580025707.01.T01:CDS 35.0%
AGTATGATGGCATCTGAAAA+CGG + Chr5:23094491-23094510 MsG0580025707.01.T01:intron 35.0%
AGTCGAAAAGATAATCGGAA+GGG + Chr5:23093852-23093871 MsG0580025707.01.T01:CDS 35.0%
AGTTTAAGGATTCTGATTGG+AGG + Chr5:23095202-23095221 MsG0580025707.01.T01:CDS 35.0%
ATCATCTTAGAGATAGGATG+TGG + Chr5:23096336-23096355 MsG0580025707.01.T01:CDS 35.0%
ATTTGCCTGATGAGTTGTTT+AGG + Chr5:23096180-23096199 MsG0580025707.01.T01:CDS 35.0%
CATATCCTAAACAACTCATC+AGG - Chr5:23096188-23096207 None:intergenic 35.0%
GCTGCACAATTTCAAAAGAA+AGG + Chr5:23094736-23094755 MsG0580025707.01.T01:CDS 35.0%
GTGGAAGTCGAAAAGATAAT+CGG + Chr5:23093847-23093866 MsG0580025707.01.T01:CDS 35.0%
GTTTAAGGATTCTGATTGGA+GGG + Chr5:23095203-23095222 MsG0580025707.01.T01:CDS 35.0%
TAATGAGAGGAAACATGGAT+GGG + Chr5:23095245-23095264 MsG0580025707.01.T01:CDS 35.0%
TCATCTTAGAGATAGGATGT+GGG + Chr5:23096337-23096356 MsG0580025707.01.T01:CDS 35.0%
TGATTCTTATGGAAAAGCCT+TGG + Chr5:23095176-23095195 MsG0580025707.01.T01:CDS 35.0%
! ATGACAATTGAGAGCTGTTT+TGG + Chr5:23096044-23096063 MsG0580025707.01.T01:CDS 35.0%
! CGGAACAGAACAAATTTTGT+TGG + Chr5:23093750-23093769 MsG0580025707.01.T01:CDS 35.0%
! CTGATGAGTTGTTTAGGATA+TGG + Chr5:23096186-23096205 MsG0580025707.01.T01:CDS 35.0%
! TCGGATTGTTCTTTTACCAA+GGG + Chr5:23095117-23095136 MsG0580025707.01.T01:CDS 35.0%
! TTCGGATTGTTCTTTTACCA+AGG + Chr5:23095116-23095135 MsG0580025707.01.T01:CDS 35.0%
! TTGTTTTCGTCATCTGTGTT+TGG - Chr5:23094847-23094866 None:intergenic 35.0%
!! GATTGTTGCTTTGATTGATC+TGG + Chr5:23094051-23094070 MsG0580025707.01.T01:intron 35.0%
!! GTTTTGACATCTTCATTGTC+CGG + Chr5:23095648-23095667 MsG0580025707.01.T01:CDS 35.0%
!! TCTTTCAGGTTAATTCCCAT+AGG - Chr5:23093820-23093839 None:intergenic 35.0%
!! TGACAATTGAGAGCTGTTTT+GGG + Chr5:23096045-23096064 MsG0580025707.01.T01:CDS 35.0%
AACGAGGTTTCTAACCTTGA+AGG + Chr5:23096242-23096261 MsG0580025707.01.T01:CDS 40.0%
ACGAGGTTTCTAACCTTGAA+GGG + Chr5:23096243-23096262 MsG0580025707.01.T01:CDS 40.0%
ACTATGAGTCTTTGCCTTGA+AGG - Chr5:23096119-23096138 None:intergenic 40.0%
AGATGCCATCATACTAACCT+GGG - Chr5:23094486-23094505 None:intergenic 40.0%
AGCAACAATCAAGGCATGTT+TGG - Chr5:23094041-23094060 None:intergenic 40.0%
AGGACTACTTATGTGACTCA+AGG + Chr5:23095778-23095797 MsG0580025707.01.T01:CDS 40.0%
ATGCCTAATGAGAGGAAACA+TGG + Chr5:23095240-23095259 MsG0580025707.01.T01:CDS 40.0%
ATGTGATGTAGACTCCTTCT+TGG - Chr5:23094998-23095017 None:intergenic 40.0%
ATGTTTCCTCTCATTAGGCA+TGG - Chr5:23095241-23095260 None:intergenic 40.0%
CAAGAGCTGATAGGTTAAGA+AGG + Chr5:23095061-23095080 MsG0580025707.01.T01:CDS 40.0%
CATCCATGTTTCCTCTCATT+AGG - Chr5:23095246-23095265 None:intergenic 40.0%
CTAATGAGAGGAAACATGGA+TGG + Chr5:23095244-23095263 MsG0580025707.01.T01:CDS 40.0%
CTGATAGGTTAAGAAGGGAT+AGG + Chr5:23095067-23095086 MsG0580025707.01.T01:CDS 40.0%
GCTTATATTAGTGACCGGAT+GGG - Chr5:23094180-23094199 None:intergenic 40.0%
GGACTACTTATGTGACTCAA+GGG + Chr5:23095779-23095798 MsG0580025707.01.T01:CDS 40.0%
GGATGATATAGAACTTGAGG+CGG + Chr5:23096217-23096236 MsG0580025707.01.T01:CDS 40.0%
GGTTCATATGAGATCCAAGA+AGG + Chr5:23094981-23095000 MsG0580025707.01.T01:CDS 40.0%
GTCGAAAAGATAATCGGAAG+GGG + Chr5:23093853-23093872 MsG0580025707.01.T01:CDS 40.0%
TCTTTGCCTTGAAGGTTTGT+AGG - Chr5:23096111-23096130 None:intergenic 40.0%
TGATTTCCGGCAACTTGTAA+TGG - Chr5:23094768-23094787 None:intergenic 40.0%
TGCTTATATTAGTGACCGGA+TGG - Chr5:23094181-23094200 None:intergenic 40.0%
TTATGGGCAGTGTGTCAATT+AGG + Chr5:23095927-23095946 MsG0580025707.01.T01:CDS 40.0%
TTTCGTCATCTGTGTTTGGT+GGG - Chr5:23094843-23094862 None:intergenic 40.0%
TTTCTTTGGCAAGAGCTGAT+AGG + Chr5:23095052-23095071 MsG0580025707.01.T01:CDS 40.0%
! CATGTGCATGTTGATAAGGA+TGG + Chr5:23094904-23094923 MsG0580025707.01.T01:CDS 40.0%
! CTTTTGGTACTTCTTCGAGA+GGG + Chr5:23094401-23094420 MsG0580025707.01.T01:CDS 40.0%
! GTTTAGGATATGGGAGGAAA+TGG + Chr5:23096196-23096215 MsG0580025707.01.T01:CDS 40.0%
! TGAGTTGTTTAGGATATGGG+AGG + Chr5:23096190-23096209 MsG0580025707.01.T01:CDS 40.0%
! TTGTTCTTTTACCAAGGGTG+TGG + Chr5:23095122-23095141 MsG0580025707.01.T01:CDS 40.0%
! TTTTCGTCATCTGTGTTTGG+TGG - Chr5:23094844-23094863 None:intergenic 40.0%
!! AACGTTGTTGTTTACCAAGC+TGG - Chr5:23093957-23093976 None:intergenic 40.0%
!! ATTACGCGAGATTGTTTCTG+TGG - Chr5:23095895-23095914 None:intergenic 40.0%
!! GACAATTGAGAGCTGTTTTG+GGG + Chr5:23096046-23096065 MsG0580025707.01.T01:CDS 40.0%
!! GCTAAGGTTCTAAAGCCTAT+GGG + Chr5:23093802-23093821 MsG0580025707.01.T01:CDS 40.0%
!! TGCTAAGGTTCTAAAGCCTA+TGG + Chr5:23093801-23093820 MsG0580025707.01.T01:CDS 40.0%
!! TTGTTGGGTCTTATTGGTGA+AGG + Chr5:23093766-23093785 MsG0580025707.01.T01:CDS 40.0%
AAAACGGATCCACATGTGAG+TGG + Chr5:23094507-23094526 MsG0580025707.01.T01:intron 45.0%
AAGATAATCGGAAGGGGTAG+TGG + Chr5:23093859-23093878 MsG0580025707.01.T01:CDS 45.0%
ACCATGGGCTCAAGTTTCTT+TGG + Chr5:23095038-23095057 MsG0580025707.01.T01:CDS 45.0%
CAGATGCCATCATACTAACC+TGG - Chr5:23094487-23094506 None:intergenic 45.0%
CTGTAATGAACTGAGAGGCA+AGG + Chr5:23095758-23095777 MsG0580025707.01.T01:CDS 45.0%
GGAAACATGGATGGGTACTT+AGG + Chr5:23095253-23095272 MsG0580025707.01.T01:intron 45.0%
GTACTTCTTCGAGAGGGTAA+GGG + Chr5:23094407-23094426 MsG0580025707.01.T01:CDS 45.0%
TGCCTTCCTACAAACCTTCA+AGG + Chr5:23096102-23096121 MsG0580025707.01.T01:CDS 45.0%
TGCCTTGAAGGTTTGTAGGA+AGG - Chr5:23096107-23096126 None:intergenic 45.0%
TGCGAGTTCCAAAACTCTCT+TGG - Chr5:23093920-23093939 None:intergenic 45.0%
TTATCGCCATGCCTAATGAG+AGG + Chr5:23095232-23095251 MsG0580025707.01.T01:CDS 45.0%
TTCAGCAACAAACTCACGAC+CGG - Chr5:23095670-23095689 None:intergenic 45.0%
! ATCTGTGTTTGGTGGGTCTT+GGG - Chr5:23094836-23094855 None:intergenic 45.0%
! CGATTAAGGCACCAAGTCTT+CGG - Chr5:23094535-23094554 None:intergenic 45.0%
! GCTGAAGTGTTAAATGGGTC+TGG + Chr5:23095684-23095703 MsG0580025707.01.T01:CDS 45.0%
! GCTTTTGGTACTTCTTCGAG+AGG + Chr5:23094400-23094419 MsG0580025707.01.T01:CDS 45.0%
! GGCTACTTTGCGTGTAACTT+CGG + Chr5:23095098-23095117 MsG0580025707.01.T01:CDS 45.0%
! TGATAAAGGTGCAGCTGAGA+TGG + Chr5:23096301-23096320 MsG0580025707.01.T01:CDS 45.0%
!! ATTGGTGAAGGCACTGGTAT+TGG + Chr5:23093778-23093797 MsG0580025707.01.T01:CDS 45.0%
!! CTCGAAGAAGTACCAAAAGC+AGG - Chr5:23094400-23094419 None:intergenic 45.0%
!!! AGTTTTGGAACTCGCACTTG+AGG + Chr5:23093924-23093943 MsG0580025707.01.T01:CDS 45.0%
AAAGACGAGTGCCTGTACCA+AGG - Chr5:23096020-23096039 None:intergenic 50.0%
ACCTGGGTGCGAATAGTAGT+TGG - Chr5:23094470-23094489 None:intergenic 50.0%
CAGCTGAGATGGCAATGGAT+AGG + Chr5:23096312-23096331 MsG0580025707.01.T01:CDS 50.0%
CATTCGAGCTCATCCCTTCA+AGG - Chr5:23096259-23096278 None:intergenic 50.0%
CTCTTGGCACGTGGAGTAAT+CGG - Chr5:23093904-23093923 None:intergenic 50.0%
GCCAAAGAAACTTGAGCCCA+TGG - Chr5:23095042-23095061 None:intergenic 50.0%
GCGTGACCATTACAAGTTGC+CGG + Chr5:23094759-23094778 MsG0580025707.01.T01:CDS 50.0%
GGATGGGTACTTAGGCTCTA+AGG + Chr5:23095261-23095280 MsG0580025707.01.T01:intron 50.0%
GGTACAGGCACTCGTCTTTA+AGG + Chr5:23096021-23096040 MsG0580025707.01.T01:CDS 50.0%
GGTACTTCTTCGAGAGGGTA+AGG + Chr5:23094406-23094425 MsG0580025707.01.T01:CDS 50.0%
TCCAAAACTCTCTTGGCACG+TGG - Chr5:23093913-23093932 None:intergenic 50.0%
TCCAACTACTATTCGCACCC+AGG + Chr5:23094466-23094485 MsG0580025707.01.T01:CDS 50.0%
TCGCACCCAGGTTAGTATGA+TGG + Chr5:23094478-23094497 MsG0580025707.01.T01:intron 50.0%
TCTTCGGTTCCACTCACATG+TGG - Chr5:23094519-23094538 None:intergenic 50.0%
TGTGAGTGGAACCGAAGACT+TGG + Chr5:23094521-23094540 MsG0580025707.01.T01:intron 50.0%
! AAGAAGGGATAGGAGTGCAG+AGG + Chr5:23095077-23095096 MsG0580025707.01.T01:CDS 50.0%
! CATCTGTGTTTGGTGGGTCT+TGG - Chr5:23094837-23094856 None:intergenic 50.0%
! GAATGAGGCACTTGCACCAT+GGG + Chr5:23095023-23095042 MsG0580025707.01.T01:CDS 50.0%
! TCCACGTGCCAAGAGAGTTT+TGG + Chr5:23093909-23093928 MsG0580025707.01.T01:CDS 50.0%
! TGAATGAGGCACTTGCACCA+TGG + Chr5:23095022-23095041 MsG0580025707.01.T01:CDS 50.0%
!! AGGCACTGGTATTGGTGCTA+AGG + Chr5:23093786-23093805 MsG0580025707.01.T01:CDS 50.0%
!! CGGCTTGGGCACAATTTTGT+CGG + Chr5:23093730-23093749 MsG0580025707.01.T01:CDS 50.0%
!! GGTCTTATTGGTGAAGGCAC+TGG + Chr5:23093772-23093791 MsG0580025707.01.T01:CDS 50.0%
!!! TGAGAGCTGTTTTGGGGTGT+TGG + Chr5:23096052-23096071 MsG0580025707.01.T01:CDS 50.0%
AGAACTTGAGGCGGTGAACG+AGG + Chr5:23096226-23096245 MsG0580025707.01.T01:CDS 55.0%
AGGTGCAGCTGAGATGGCAA+TGG + Chr5:23096307-23096326 MsG0580025707.01.T01:CDS 55.0%
CACACGCAGTGAAAAGCGAC+AGG + Chr5:23094960-23094979 MsG0580025707.01.T01:CDS 55.0%
TAACCTGAAAGACGCTCGCG+TGG + Chr5:23093828-23093847 MsG0580025707.01.T01:CDS 55.0%
! CGGAACTGAGCACCTGCTTT+TGG + Chr5:23094385-23094404 MsG0580025707.01.T01:CDS 55.0%
!! TGTTGGCTCAAGAGGACGCT+AGG + Chr5:23093707-23093726 MsG0580025707.01.T01:CDS 55.0%
AAGAGGACGCTAGGCGGCTT+GGG + Chr5:23093716-23093735 MsG0580025707.01.T01:CDS 60.0%
ATCGAGAGCAGCCACACCCT+TGG - Chr5:23095136-23095155 None:intergenic 60.0%
CTTCCACGCGAGCGTCTTTC+AGG - Chr5:23093834-23093853 None:intergenic 60.0%
CTTGAGGAAGCTCGCCAGCT+TGG + Chr5:23093940-23093959 MsG0580025707.01.T01:CDS 60.0%
TGGCTCAAGAGGACGCTAGG+CGG + Chr5:23093710-23093729 MsG0580025707.01.T01:CDS 60.0%
CAAGAGGACGCTAGGCGGCT+TGG + Chr5:23093715-23093734 MsG0580025707.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 23093706 23096376 23093706 ID=MsG0580025707.01;Name=MsG0580025707.01
Chr5 mRNA 23093706 23096376 23093706 ID=MsG0580025707.01.T01;Parent=MsG0580025707.01;Name=MsG0580025707.01.T01;_AED=0.47;_eAED=0.49;_QI=0|0|0|0.75|1|1|4|0|547
Chr5 exon 23093706 23093961 23093706 ID=MsG0580025707.01.T01:exon:3719;Parent=MsG0580025707.01.T01
Chr5 exon 23094372 23094487 23094372 ID=MsG0580025707.01.T01:exon:3720;Parent=MsG0580025707.01.T01
Chr5 exon 23094724 23095266 23094724 ID=MsG0580025707.01.T01:exon:3721;Parent=MsG0580025707.01.T01
Chr5 exon 23095648 23096376 23095648 ID=MsG0580025707.01.T01:exon:3722;Parent=MsG0580025707.01.T01
Chr5 CDS 23093706 23093961 23093706 ID=MsG0580025707.01.T01:cds;Parent=MsG0580025707.01.T01
Chr5 CDS 23094372 23094487 23094372 ID=MsG0580025707.01.T01:cds;Parent=MsG0580025707.01.T01
Chr5 CDS 23094724 23095266 23094724 ID=MsG0580025707.01.T01:cds;Parent=MsG0580025707.01.T01
Chr5 CDS 23095648 23096376 23095648 ID=MsG0580025707.01.T01:cds;Parent=MsG0580025707.01.T01
Gene Sequence

>MsG0580025707.01.T01

ATGTTGGCTCAAGAGGACGCTAGGCGGCTTGGGCACAATTTTGTCGGAACAGAACAAATTTTGTTGGGTCTTATTGGTGAAGGCACTGGTATTGGTGCTAAGGTTCTAAAGCCTATGGGAATTAACCTGAAAGACGCTCGCGTGGAAGTCGAAAAGATAATCGGAAGGGGTAGTGGTTGTGTCGCTGTTGAGATTCCGATTACTCCACGTGCCAAGAGAGTTTTGGAACTCGCACTTGAGGAAGCTCGCCAGCTTGGTCATAATTATATCGGAACTGAGCACCTGCTTTTGGTACTTCTTCGAGAGGGTAAGGGTGTTGCAGCATGTGTTCTTGAAAATTTGGGTGCTGATCCAACTACTATTCGCACCCAGGTGCATCTCAAAGCTGCACAATTTCAAAAGAAAGGGCGTGACCATTACAAGTTGCCGGAAATCATATTCAACAAAAATAATGCAACTGGAGTACTTCATCATTCATTTACCCAAGACCCACCAAACACAGATGACGAAAACAAGCTTGATGATCAATACATTAACAATGGGATTGCTAATCATGTGCATGTTGATAAGGATGGTTCAGATGATGATCTACATGAAGTTGAGCGCATCACACGCAGTGAAAAGCGACAGGTTCATATGAGATCCAAGAAGGAGTCTACATCACATCATATGAATGAGGCACTTGCACCATGGGCTCAAGTTTCTTTGGCAAGAGCTGATAGGTTAAGAAGGGATAGGAGTGCAGAGGCTACTTTGCGTGTAACTTCGGATTGTTCTTTTACCAAGGGTGTGGCTGCTCTCGATGAACTAATAGACATTTCAGATGATTCTTATGGAAAAGCCTTGGAAAAGTTTAAGGATTCTGATTGGAGGGAAATGTTTATCGCCATGCCTAATGAGAGGAAACATGGATGGGTTTTGACATCTTCATTGTCCGGTCGTGAGTTTGTTGCTGAAGTGTTAAATGGGTCTGGAACTAGCTGTTTTCATTTATTTCGAATGAAGAAAGAGTATTTTCTTAATTTCTGTAATGAACTGAGAGGCAAGGACTACTTATGTGACTCAAGGGATGTGCTTGTTGAAGAGAAAGTTGCTACATTCTTATTCATAATTGGTCATAATGTTCGTCACAGAGTTGCTTCATACCTTTTTCAACATTCCACAGAAACAATCTCGCGTAATTTCAAGGAAGTATTATGGGCAGTGTGTCAATTAGGAAAAGAACTGATAAAGCAAGAGTCTATGGAGTTGCCTAATAGAATTAAGAATAATCCAAAATATTATCCTTGGTACAGGCACTCGTCTTTAAGGATGACAATTGAGAGCTGTTTTGGGGTGTTGGAAAACAGATTTCCTATTTTAAAGTTAATGCCTTCCTACAAACCTTCAAGGCAAAGACTCATAGTAACTGCTTGTTGTACTATTCACAATTACATACGTAAGTGGAATTTGCCTGATGAGTTGTTTAGGATATGGGAGGAAATGGATGATATAGAACTTGAGGCGGTGAACGAGGTTTCTAACCTTGAAGGGATGAGCTCGAATGTTGAAAACTTAACAAGGTTATCTGATAAAGGTGCAGCTGAGATGGCAATGGATAGGAATCATCTTAGAGATAGGATGTGGGTACATCGTTATAATTAA
Protein sequence

>MsG0580025707.01.T01

MLAQEDARRLGHNFVGTEQILLGLIGEGTGIGAKVLKPMGINLKDARVEVEKIIGRGSGCVAVEIPITPRAKRVLELALEEARQLGHNYIGTEHLLLVLLREGKGVAACVLENLGADPTTIRTQVHLKAAQFQKKGRDHYKLPEIIFNKNNATGVLHHSFTQDPPNTDDENKLDDQYINNGIANHVHVDKDGSDDDLHEVERITRSEKRQVHMRSKKESTSHHMNEALAPWAQVSLARADRLRRDRSAEATLRVTSDCSFTKGVAALDELIDISDDSYGKALEKFKDSDWREMFIAMPNERKHGWVLTSSLSGREFVAEVLNGSGTSCFHLFRMKKEYFLNFCNELRGKDYLCDSRDVLVEEKVATFLFIIGHNVRHRVASYLFQHSTETISRNFKEVLWAVCQLGKELIKQESMELPNRIKNNPKYYPWYRHSSLRMTIESCFGVLENRFPILKLMPSYKPSRQRLIVTACCTIHNYIRKWNLPDELFRIWEEMDDIELEAVNEVSNLEGMSSNVENLTRLSDKGAAEMAMDRNHLRDRMWVHRYN*