AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009421.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009421.01.T01 MTR_1g033450 29.781 319 184 8 3 290 44 353 2.43e-29 117
MsG0280009421.01.T01 MTR_1g050495 26.728 217 148 4 81 293 217 426 1.35e-21 95.1
MsG0280009421.01.T01 MTR_1g050495 23.856 306 193 10 2 295 49 326 6.56e-11 63.2
MsG0280009421.01.T01 MTR_6g079310 29.327 208 136 4 81 284 173 373 7.62e-20 89.7
MsG0280009421.01.T01 MTR_6g079310 23.832 214 154 3 81 291 278 485 5.07e-14 72.8
MsG0280009421.01.T01 MTR_6g079240 29.412 204 133 4 85 284 65 261 9.48e-20 89.4
MsG0280009421.01.T01 MTR_6g079240 23.832 214 154 3 81 291 166 373 6.94e-14 72.0
MsG0280009421.01.T01 MTR_6g079380 29.327 208 125 4 81 284 227 416 1.42e-19 89.4
MsG0280009421.01.T01 MTR_6g079380 22.843 197 143 3 100 293 340 530 1.79e-11 65.1
MsG0280009421.01.T01 MTR_0572s0010 28.358 201 124 3 81 278 221 404 2.33e-19 88.6
MsG0280009421.01.T01 MTR_6g080210 27.523 218 146 4 85 296 218 429 3.49e-19 87.8
MsG0280009421.01.T01 MTR_1g064390 25.893 224 149 6 67 284 203 415 6.65e-19 87.4
MsG0280009421.01.T01 MTR_6g077540 28.986 207 138 4 81 284 243 443 8.89e-19 87.0
MsG0280009421.01.T01 MTR_6g077540 23.132 281 182 6 10 284 86 338 1.29e-13 71.6
MsG0280009421.01.T01 MTR_6g077540 20.656 305 211 9 11 293 262 557 2.46e-11 64.7
MsG0280009421.01.T01 MTR_6g065540 29.327 208 136 4 81 284 229 429 1.09e-18 86.7
MsG0280009421.01.T01 MTR_6g065540 22.477 218 156 4 81 293 334 543 1.78e-11 65.1
MsG0280009421.01.T01 MTR_6g065540 22.939 279 185 5 10 284 72 324 3.41e-11 64.3
MsG0280009421.01.T01 MTR_6g078160 28.986 207 138 3 81 284 215 415 1.11e-18 86.7
MsG0280009421.01.T01 MTR_6g078160 23.843 281 180 6 10 284 58 310 2.53e-14 73.6
MsG0280009421.01.T01 MTR_6g079920 27.053 207 142 4 81 284 244 444 1.55e-18 86.3
MsG0280009421.01.T01 MTR_6g079920 24.068 295 187 8 10 295 87 353 4.51e-13 69.7
MsG0280009421.01.T01 MTR_6g079920 21.311 305 213 7 7 291 259 556 1.04e-12 68.9
MsG0280009421.01.T01 MTR_0308s0020 29.787 188 121 4 81 264 213 393 1.84e-18 85.9
MsG0280009421.01.T01 MTR_0237s0070 29.808 208 135 4 81 284 352 552 2.34e-18 85.9
MsG0280009421.01.T01 MTR_0237s0070 25.000 192 135 3 103 291 479 664 2.73e-13 70.5
MsG0280009421.01.T01 MTR_0014s0260 29.787 188 121 4 81 264 153 333 4.76e-18 84.3
MsG0280009421.01.T01 MTR_0014s0180 29.255 188 122 4 81 264 220 400 5.70e-18 84.3
MsG0280009421.01.T01 MTR_6g079830 26.570 207 143 4 81 284 244 444 6.03e-18 84.7
MsG0280009421.01.T01 MTR_6g079830 24.407 295 186 8 10 295 87 353 8.04e-14 72.0
MsG0280009421.01.T01 MTR_6g478210 28.846 208 137 5 81 284 61 261 1.96e-17 82.0
MsG0280009421.01.T01 MTR_6g079250 28.846 208 137 5 81 284 61 261 2.20e-17 82.0
MsG0280009421.01.T01 MTR_6g079890 28.846 208 137 5 81 284 197 397 2.29e-17 82.4
MsG0280009421.01.T01 MTR_6g079210 25.604 207 145 3 81 284 61 261 2.61e-17 82.0
MsG0280009421.01.T01 MTR_6g079210 22.467 227 162 6 72 293 158 375 7.40e-12 65.9
MsG0280009421.01.T01 MTR_3g061000 29.508 183 118 4 85 263 232 407 2.68e-17 82.4
MsG0280009421.01.T01 MTR_2g035630 30.481 187 121 4 81 264 217 397 2.93e-17 82.4
MsG0280009421.01.T01 MTR_2g035630 21.586 227 164 5 72 293 314 531 6.10e-11 63.5
MsG0280009421.01.T01 MTR_3g034990 30.319 188 120 4 81 264 227 407 3.32e-17 82.0
MsG0280009421.01.T01 MTR_0654s0010 29.949 197 117 6 81 263 109 298 3.53e-17 81.6
MsG0280009421.01.T01 MTR_4g107180 26.738 187 128 3 81 264 112 292 3.67e-17 81.6
MsG0280009421.01.T01 MTR_6g078190 25.000 280 188 8 10 284 64 326 3.89e-17 82.0
MsG0280009421.01.T01 MTR_6g078190 22.581 217 155 4 81 292 231 439 2.44e-11 64.7
MsG0280009421.01.T01 MTR_6g079220 26.203 187 129 4 81 264 222 402 4.59e-17 81.6
MsG0280009421.01.T01 MTR_6g079590 27.602 221 150 4 81 297 221 435 1.05e-16 80.9
MsG0280009421.01.T01 MTR_6g079590 21.812 298 199 7 10 301 64 333 1.48e-12 68.2
MsG0280009421.01.T01 MTR_6g079590 23.832 214 149 6 81 288 361 566 2.58e-11 64.7
MsG0280009421.01.T01 MTR_6g079180 25.604 207 145 3 81 284 61 261 1.14e-16 80.1
MsG0280009421.01.T01 MTR_6g079180 23.077 221 156 6 72 287 158 369 1.43e-11 64.7
MsG0280009421.01.T01 MTR_7g012890 29.208 202 132 4 81 278 218 412 1.62e-16 80.1
MsG0280009421.01.T01 MTR_6g065560 28.788 198 132 3 81 275 260 451 4.07e-16 79.0
MsG0280009421.01.T01 MTR_6g061120 27.536 207 141 3 81 284 83 283 5.44e-16 78.2
MsG0280009421.01.T01 MTR_3g448620 27.861 201 136 3 81 278 212 406 6.13e-16 78.6
MsG0280009421.01.T01 MTR_6g078210 27.053 207 142 3 81 284 231 431 6.63e-16 78.2
MsG0280009421.01.T01 MTR_6g078210 24.333 300 190 9 5 295 69 340 1.20e-11 65.5
MsG0280009421.01.T01 MTR_0014s0210 27.451 204 134 5 85 284 175 368 8.65e-16 77.8
MsG0280009421.01.T01 MTR_0014s0250 28.191 188 124 5 81 264 217 397 1.05e-15 77.8
MsG0280009421.01.T01 MTR_0110s0060 25.381 197 138 3 85 278 218 408 1.66e-15 77.0
MsG0280009421.01.T01 MTR_0110s0060 22.039 304 202 7 1 297 48 323 1.09e-11 65.5
MsG0280009421.01.T01 MTR_6g079960 27.103 214 145 5 81 290 222 428 1.75e-15 77.0
MsG0280009421.01.T01 MTR_6g077800 26.054 261 159 6 10 264 89 321 1.83e-15 77.0
MsG0280009421.01.T01 MTR_6g077800 23.267 202 141 5 93 288 223 416 1.25e-11 65.5
MsG0280009421.01.T01 MTR_6g068820 28.324 173 115 4 81 250 138 304 2.20e-15 76.6
MsG0280009421.01.T01 MTR_6g082970 29.348 184 119 4 85 264 22 198 5.72e-15 73.6
MsG0280009421.01.T01 MTR_1g045850 24.599 187 132 3 81 264 169 349 7.24e-15 75.1
MsG0280009421.01.T01 MTR_0019s0210 25.668 187 130 3 81 264 222 402 1.10e-14 74.7
MsG0280009421.01.T01 MTR_6g069180 25.267 281 176 7 10 284 63 315 1.71e-14 73.9
MsG0280009421.01.T01 MTR_6g069180 27.404 208 140 5 81 284 220 420 9.46e-13 68.9
MsG0280009421.01.T01 MTR_0429s0020 25.962 208 143 4 81 284 230 430 1.79e-14 73.9
MsG0280009421.01.T01 MTR_6g445320 27.273 187 120 4 81 264 216 389 1.86e-14 73.9
MsG0280009421.01.T01 MTR_7g076550 26.887 212 144 4 86 294 234 437 1.86e-14 73.9
MsG0280009421.01.T01 MTR_3g061020 28.415 183 108 4 85 250 62 238 2.63e-14 73.2
MsG0280009421.01.T01 MTR_1g029490 22.705 207 151 3 81 284 224 424 2.99e-14 73.6
MsG0280009421.01.T01 MTR_1g029490 24.651 215 146 8 81 288 294 499 1.76e-11 65.1
MsG0280009421.01.T01 MTR_7g405940 25.339 221 157 4 81 298 252 467 4.23e-14 73.2
MsG0280009421.01.T01 MTR_2g048635 28.148 135 86 4 136 263 111 241 5.29e-14 70.9
MsG0280009421.01.T01 MTR_5g090210 28.646 192 130 4 85 274 541 727 7.07e-14 72.4
MsG0280009421.01.T01 MTR_5g090210 23.571 280 177 8 43 297 239 506 6.79e-11 63.5
MsG0280009421.01.T01 MTR_1840s0010 31.655 139 84 4 81 215 204 335 1.17e-13 70.9
MsG0280009421.01.T01 MTR_8g107050 24.399 291 187 10 1 284 290 554 1.26e-13 71.6
MsG0280009421.01.T01 MTR_6g079440 28.402 169 112 3 85 250 217 379 1.28e-13 71.6
MsG0280009421.01.T01 MTR_6g079440 24.013 304 194 7 1 295 47 322 2.12e-13 70.9
MsG0280009421.01.T01 MTR_8g107050 24.399 291 187 10 1 284 290 554 1.37e-13 71.6
MsG0280009421.01.T01 MTR_1g091880 28.235 170 111 4 85 250 40 202 1.37e-13 70.9
MsG0280009421.01.T01 MTR_0054s0140 27.225 191 130 4 77 264 273 457 2.42e-13 70.5
MsG0280009421.01.T01 MTR_0054s0140 25.547 274 172 6 10 278 85 331 8.15e-13 68.9
MsG0280009421.01.T01 MTR_6g079270 26.630 184 104 2 81 264 134 286 3.41e-13 69.7
MsG0280009421.01.T01 MTR_6g068790 28.902 173 114 4 81 250 229 395 4.67e-13 69.7
MsG0280009421.01.T01 MTR_1g016213 26.596 188 127 4 81 264 10 190 1.03e-12 67.4
MsG0280009421.01.T01 MTR_5g029690 26.423 246 147 6 81 293 375 619 1.45e-12 68.6
MsG0280009421.01.T01 MTR_6g471100 28.177 181 119 4 88 264 304 477 1.52e-12 68.6
MsG0280009421.01.T01 MTR_4g076540 24.675 308 196 9 14 296 505 801 1.90e-12 68.2
MsG0280009421.01.T01 MTR_6g081920 26.036 169 116 4 85 250 124 286 3.10e-12 67.0
MsG0280009421.01.T01 MTR_7g007400 24.434 221 159 4 81 298 234 449 3.58e-12 67.0
MsG0280009421.01.T01 MTR_6g080200 24.510 204 119 3 85 288 231 399 4.43e-12 66.6
MsG0280009421.01.T01 MTR_6g069840 26.154 195 135 3 93 284 317 505 9.76e-12 65.9
MsG0280009421.01.T01 MTR_3g088950 27.500 200 130 5 89 284 143 331 9.78e-12 65.9
MsG0280009421.01.T01 MTR_3g088950 21.586 227 156 7 85 301 170 384 6.23e-11 63.5
MsG0280009421.01.T01 MTR_6g069840 26.154 195 135 3 93 284 333 521 9.94e-12 65.9
MsG0280009421.01.T01 MTR_6g478130 24.615 195 135 4 100 284 83 275 1.13e-11 65.5
MsG0280009421.01.T01 MTR_6g478130 23.005 213 151 4 75 282 139 343 2.43e-11 64.3
MsG0280009421.01.T01 MTR_6g079460 22.348 264 165 4 2 264 37 261 1.59e-11 64.7
MsG0280009421.01.T01 MTR_3g054110 23.410 346 172 12 2 259 66 406 1.99e-11 64.7
MsG0280009421.01.T01 MTR_0177s0060 24.155 207 130 3 81 284 207 389 2.88e-11 64.3
MsG0280009421.01.T01 MTR_3g100600 25.500 200 139 5 94 288 234 428 3.42e-11 64.3
MsG0280009421.01.T01 MTR_0573s0020 22.667 225 164 5 72 293 37 254 4.21e-11 62.8
MsG0280009421.01.T01 MTR_0573s0020 22.535 213 152 4 75 282 4 208 6.21e-11 62.0
MsG0280009421.01.T01 MTR_5g095130 22.222 216 159 3 86 298 646 855 4.74e-11 63.9
MsG0280009421.01.T01 MTR_7g066990 26.961 204 137 6 103 300 403 600 5.22e-11 63.5
MsG0280009421.01.T01 MTR_1g016220 26.136 176 119 4 93 264 27 195 5.41e-11 62.4
MsG0280009421.01.T01 MTR_7g091410 24.074 216 151 6 76 285 130 338 6.42e-11 63.5
MsG0280009421.01.T01 MTR_7g091410 24.074 216 151 6 76 285 269 477 7.41e-11 63.2
MsG0280009421.01.T01 MTR_7g011500 23.962 313 183 9 8 286 190 481 7.75e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009421.01.T01 AT5G41170 26.906 223 151 6 80 297 95 310 1.19e-17 83.2
MsG0280009421.01.T01 AT5G41170 26.906 223 151 6 80 297 195 410 1.54e-17 83.2
MsG0280009421.01.T01 AT5G41170 26.906 223 151 6 80 297 195 410 1.86e-17 82.8
MsG0280009421.01.T01 AT5G59900 23.548 310 213 7 7 297 191 495 8.04e-17 81.3
MsG0280009421.01.T01 AT5G59900 23.697 211 156 3 86 295 461 667 1.75e-12 68.6
MsG0280009421.01.T01 AT3G16710 22.112 303 201 8 2 297 182 456 4.30e-15 75.9
MsG0280009421.01.T01 AT3G16710 23.529 238 165 7 71 300 196 424 1.02e-13 71.6
MsG0280009421.01.T01 AT1G62680 23.780 328 215 8 1 303 76 393 7.89e-15 75.1
MsG0280009421.01.T01 AT1G62680 23.780 328 215 8 1 303 76 393 7.89e-15 75.1
MsG0280009421.01.T01 AT3G16710 21.453 289 193 7 2 284 182 442 1.43e-14 74.3
MsG0280009421.01.T01 AT3G16710 23.529 238 165 7 71 300 196 424 8.92e-14 71.6
MsG0280009421.01.T01 AT3G06920 23.372 261 171 5 41 298 600 834 2.57e-14 73.9
MsG0280009421.01.T01 AT3G06920 23.372 261 171 5 41 298 600 834 2.57e-14 73.9
MsG0280009421.01.T01 AT3G06920 23.372 261 171 5 41 298 586 820 2.73e-14 73.9
MsG0280009421.01.T01 AT4G28010 25.472 212 148 4 81 288 161 366 6.19e-14 72.8
MsG0280009421.01.T01 AT1G63080 23.229 353 206 8 2 297 164 508 6.50e-14 72.4
MsG0280009421.01.T01 AT1G63080 23.229 353 206 8 2 297 164 508 6.50e-14 72.4
MsG0280009421.01.T01 AT1G63080 23.229 353 206 8 2 297 164 508 6.50e-14 72.4
MsG0280009421.01.T01 AT1G06580 22.305 269 179 6 7 271 78 320 2.13e-13 70.9
MsG0280009421.01.T01 AT5G16640 31.081 148 94 4 153 295 135 279 2.18e-13 70.9
MsG0280009421.01.T01 AT2G02150 23.864 264 165 6 41 297 331 565 3.24e-13 70.5
MsG0280009421.01.T01 AT2G02150 23.864 264 165 6 41 297 331 565 3.24e-13 70.5
MsG0280009421.01.T01 AT3G22470 22.835 254 158 6 10 255 72 295 1.03e-12 68.9
MsG0280009421.01.T01 AT3G22470 22.835 254 158 6 10 255 72 295 1.13e-12 68.9
MsG0280009421.01.T01 AT1G06580 24.038 208 145 5 67 271 17 214 1.53e-12 67.8
MsG0280009421.01.T01 AT1G06580 24.038 208 145 5 67 271 17 214 1.53e-12 67.8
MsG0280009421.01.T01 AT1G64583 24.757 206 142 5 67 269 115 310 1.62e-12 68.2
MsG0280009421.01.T01 AT1G12620 21.659 217 160 4 85 297 270 480 1.70e-12 68.2
MsG0280009421.01.T01 AT1G64583 24.757 206 142 5 67 269 90 285 1.75e-12 68.2
MsG0280009421.01.T01 AT3G07290 24.490 196 133 5 85 274 324 510 2.41e-12 67.8
MsG0280009421.01.T01 AT3G07290 22.772 303 212 7 1 284 396 695 3.45e-11 64.3
MsG0280009421.01.T01 AT4G26800 24.215 223 156 5 81 298 137 351 2.58e-12 67.4
MsG0280009421.01.T01 AT4G26800 23.832 214 148 6 75 282 201 405 8.42e-12 65.9
MsG0280009421.01.T01 AT4G26800 24.215 223 156 5 81 298 67 281 3.15e-12 67.0
MsG0280009421.01.T01 AT4G26800 24.034 233 156 8 75 295 131 354 1.18e-11 65.1
MsG0280009421.01.T01 AT1G62720 23.105 277 181 7 7 278 68 317 3.63e-12 67.0
MsG0280009421.01.T01 AT4G26800 24.312 218 152 5 81 293 212 421 3.99e-12 67.0
MsG0280009421.01.T01 AT4G26800 23.832 214 148 6 75 282 276 480 6.60e-12 66.2
MsG0280009421.01.T01 AT5G61400 23.881 201 143 4 68 262 340 536 4.35e-12 67.0
MsG0280009421.01.T01 AT1G63130 22.093 258 171 5 44 297 293 524 6.11e-12 66.6
MsG0280009421.01.T01 AT1G63130 22.093 258 171 5 44 297 293 524 6.11e-12 66.6
MsG0280009421.01.T01 AT5G39710 25.333 225 148 8 81 296 329 542 6.84e-12 66.6
MsG0280009421.01.T01 AT5G39710 24.747 198 129 6 87 275 405 591 1.15e-11 65.9
MsG0280009421.01.T01 AT4G31850 26.768 198 136 4 85 278 843 1035 1.38e-11 65.9
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.67e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.67e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.67e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.67e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.67e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.67e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.67e-11 65.5
MsG0280009421.01.T01 AT1G09900 20.930 215 160 4 78 288 360 568 1.80e-11 65.1
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT1G06710 20.295 271 186 5 41 282 517 786 1.85e-11 65.5
MsG0280009421.01.T01 AT3G54980 27.358 212 147 4 81 290 393 599 2.75e-11 64.7
MsG0280009421.01.T01 AT3G54980 25.561 223 149 6 67 281 584 797 7.47e-11 63.5
MsG0280009421.01.T01 AT3G54980 27.358 212 147 4 81 290 393 599 2.75e-11 64.7
MsG0280009421.01.T01 AT3G54980 25.561 223 149 6 67 281 584 797 7.47e-11 63.5
MsG0280009421.01.T01 AT5G46100 23.656 186 129 4 87 267 182 359 4.97e-11 63.5
MsG0280009421.01.T01 AT1G64100 26.804 194 123 6 73 260 202 382 6.69e-11 63.5
MsG0280009421.01.T01 AT1G64100 26.804 194 123 6 73 260 202 382 6.69e-11 63.5
MsG0280009421.01.T01 AT1G64100 26.804 194 123 6 73 260 202 382 7.29e-11 63.5
MsG0280009421.01.T01 AT5G65560 24.757 206 137 6 68 268 403 595 9.74e-11 63.2
MsG0280009421.01.T01 AT5G65560 24.757 206 137 6 68 268 403 595 9.74e-11 63.2
MsG0280009421.01.T01 AT5G65560 24.757 206 137 6 68 268 403 595 9.74e-11 63.2

Find 56 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTCCATCATGATAAAAT+TGG 0.142155 2:+51703068 MsG0280009421.01.T01:CDS
GGCTCTCTGATGGACTATTT+TGG 0.230179 2:+51703021 MsG0280009421.01.T01:CDS
TGTCTTTGCAACTTAAACTT+AGG 0.290349 2:+51702496 MsG0280009421.01.T01:CDS
TTATTAACGTCTGTGGTAAA+TGG 0.291852 2:+51703324 MsG0280009421.01.T01:CDS
CAGGTTGAGCATTGCTTACT+AGG 0.296193 2:-51703347 None:intergenic
GAAGAAACGTACAGAAATTA+AGG 0.319058 2:+51702351 MsG0280009421.01.T01:CDS
GCAGTATAGGACTTCACATT+TGG 0.337352 2:-51703207 None:intergenic
TACTTAGATATTACCTCCTT+TGG 0.348551 2:+51703000 MsG0280009421.01.T01:CDS
TATTGCCACTTACAGTGATA+TGG 0.352702 2:+51702843 MsG0280009421.01.T01:CDS
GGTTGTACTCAACAGCCTTA+TGG 0.358829 2:+51703107 MsG0280009421.01.T01:CDS
CTTTCCATCATGATAAAATT+GGG 0.361304 2:+51703069 MsG0280009421.01.T01:CDS
TTCATGAGGGCTTGCTTTGA+AGG 0.370901 2:+51703441 MsG0280009421.01.T01:CDS
CAGTATAGGACTTCACATTT+GGG 0.372398 2:-51703206 None:intergenic
AACTCCTTTCTCTTCACAAA+AGG 0.376560 2:-51702394 MsG0280009422.01.T01:intron
AACAGCCTTATGGAGGTCTT+TGG 0.388961 2:+51703117 MsG0280009421.01.T01:CDS
TGACTTGATGTCAAAATATC+TGG 0.392050 2:-51702977 None:intergenic
TCCTATACTGCAGTAATTAA+CGG 0.394433 2:+51703219 MsG0280009421.01.T01:CDS
ATCCACTCATCAATAATTCA+TGG 0.399275 2:+51702895 MsG0280009421.01.T01:CDS
CTTGTTCCGGTTGCTTAACT+AGG 0.408170 2:-51702924 None:intergenic
CGGATTTCTCAGATCTGAAA+AGG 0.413809 2:+51703239 MsG0280009421.01.T01:CDS
ACAGAAATTAAGGAGTTCAA+TGG 0.426825 2:+51702361 MsG0280009421.01.T01:CDS
TACCTCCTTTGGCTCTCTGA+TGG 0.443213 2:+51703011 MsG0280009421.01.T01:CDS
GTCTTTGCAACTTAAACTTA+GGG 0.458439 2:+51702497 MsG0280009421.01.T01:CDS
ATTGGGAATACAGCCCAATC+TGG 0.463417 2:+51703086 MsG0280009421.01.T01:CDS
AGAAACCGAAGGGCTTGTTC+CGG 0.474472 2:-51702937 None:intergenic
CAGAAATTAAGGAGTTCAAT+GGG 0.476742 2:+51702362 MsG0280009421.01.T01:CDS
GCTGTTGAGTACAACCAGAT+TGG 0.482656 2:-51703100 None:intergenic
CTGTTGAGTACAACCAGATT+GGG 0.488767 2:-51703099 None:intergenic
ACAAAGAGTAGTGCTTTCTC+AGG 0.492053 2:-51703366 None:intergenic
AGCAACCGGAACAAGCCCTT+CGG 0.509997 2:+51702932 MsG0280009421.01.T01:CDS
CCACTGCCTAGTTAAGCAAC+CGG 0.515765 2:+51702918 MsG0280009421.01.T01:CDS
ACTCCTTTCTCTTCACAAAA+GGG 0.515962 2:-51702393 MsG0280009422.01.T01:intron
GTTAACCATATCACTGTAAG+TGG 0.532034 2:-51702848 MsG0280009422.01.T01:CDS
AGAACATGATGAAGAAGAAG+AGG 0.532618 2:-51703485 None:intergenic
CCGGTTGCTTAACTAGGCAG+TGG 0.552199 2:-51702918 None:intergenic
TCCGTTAATTACTGCAGTAT+AGG 0.556716 2:-51703220 None:intergenic
ATAGTCCATCAGAGAGCCAA+AGG 0.561191 2:-51703016 None:intergenic
TCAGAAATTATTAACGTCTG+TGG 0.572301 2:+51703317 MsG0280009421.01.T01:CDS
TGGTAATATCTCAGGTGTCA+AGG 0.574501 2:+51702760 MsG0280009421.01.T01:intron
TGATGAGTGGATGAAATAAG+TGG 0.575654 2:-51702884 None:intergenic
GCAGCGCTCTCTATCTGCGT+AGG 0.598267 2:+51702419 MsG0280009421.01.T01:CDS
TGAAAACAATATAACACGGA+AGG 0.611157 2:-51703422 None:intergenic
CATGACCAAAGACCTCCATA+AGG 0.612208 2:-51703122 None:intergenic
CAAGCTTTAAAAGAAACCGA+AGG 0.627260 2:-51702948 None:intergenic
AAAACATAGAAAAGCATCCA+CGG 0.628919 2:-51703165 None:intergenic
AAGCTTTAAAAGAAACCGAA+GGG 0.631235 2:-51702947 None:intergenic
CTCAGGTGTCAAGGCCGATG+CGG 0.639813 2:+51702769 MsG0280009421.01.T01:intron
CTCATGAAAACAATATAACA+CGG 0.640739 2:-51703426 None:intergenic
GGCCATGAATTATTGATGAG+TGG 0.640779 2:-51702897 None:intergenic
AGTATAGGACTTCACATTTG+GGG 0.652522 2:-51703205 None:intergenic
GTGAAAATGATCGAAATCCG+TGG 0.658727 2:+51703148 MsG0280009421.01.T01:CDS
TGTACTCAACAGCCTTATGG+AGG 0.660545 2:+51703110 MsG0280009421.01.T01:CDS
AGTAGCATACATTACCGCAT+CGG 0.660614 2:-51702783 MsG0280009422.01.T01:CDS
GATGAGTGGATGAAATAAGT+GGG 0.663581 2:-51702883 None:intergenic
GTCCATCAGAGAGCCAAAGG+AGG 0.667702 2:-51703013 None:intergenic
ATAGATGCATTGTGCAAACA+CGG 0.697620 2:+51702809 MsG0280009421.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTAAAATGAAATTTCTTTT+GGG + Chr2:51702666-51702685 MsG0280009421.01.T01:intron 15.0%
!!! CAAAAGAAATTTCATTTTAC+TGG - Chr2:51702667-51702686 MsG0280009422.01.T01:CDS 20.0%
!!! CAGTAAAATGAAATTTCTTT+TGG + Chr2:51702665-51702684 MsG0280009421.01.T01:intron 20.0%
! ACTTTCCATCATGATAAAAT+TGG + Chr2:51703068-51703087 MsG0280009421.01.T01:CDS 25.0%
! ATTGTAAATGGTAATATCTC+AGG + Chr2:51702752-51702771 MsG0280009421.01.T01:intron 25.0%
! CTCATGAAAACAATATAACA+CGG - Chr2:51703429-51703448 None:intergenic 25.0%
! CTTTCCATCATGATAAAATT+GGG + Chr2:51703069-51703088 MsG0280009421.01.T01:CDS 25.0%
!! GTGTTATATTGTTTTCATGA+GGG + Chr2:51703428-51703447 MsG0280009421.01.T01:CDS 25.0%
!! TATTCCCAATTTTATCATGA+TGG - Chr2:51703076-51703095 None:intergenic 25.0%
ACAGAAATTAAGGAGTTCAA+TGG + Chr2:51702361-51702380 MsG0280009421.01.T01:CDS 30.0%
ATCCACTCATCAATAATTCA+TGG + Chr2:51702895-51702914 MsG0280009421.01.T01:CDS 30.0%
ATGAATGCAAAACCAAAACA+AGG + Chr2:51702605-51702624 MsG0280009421.01.T01:intron 30.0%
CAGAAATTAAGGAGTTCAAT+GGG + Chr2:51702362-51702381 MsG0280009421.01.T01:CDS 30.0%
GAAGAAACGTACAGAAATTA+AGG + Chr2:51702351-51702370 MsG0280009421.01.T01:CDS 30.0%
GTCTTTGCAACTTAAACTTA+GGG + Chr2:51702497-51702516 MsG0280009421.01.T01:CDS 30.0%
GTTCATAGAGAAAAAGTTTG+AGG + Chr2:51703395-51703414 MsG0280009421.01.T01:CDS 30.0%
TACTTAGATATTACCTCCTT+TGG + Chr2:51703000-51703019 MsG0280009421.01.T01:CDS 30.0%
TCAGAAATTATTAACGTCTG+TGG + Chr2:51703317-51703336 MsG0280009421.01.T01:CDS 30.0%
TCCTATACTGCAGTAATTAA+CGG + Chr2:51703219-51703238 MsG0280009421.01.T01:CDS 30.0%
TGAAAACAATATAACACGGA+AGG - Chr2:51703425-51703444 None:intergenic 30.0%
TGACTTGATGTCAAAATATC+TGG - Chr2:51702980-51702999 None:intergenic 30.0%
TGTCTTTGCAACTTAAACTT+AGG + Chr2:51702496-51702515 MsG0280009421.01.T01:CDS 30.0%
TTATTAACGTCTGTGGTAAA+TGG + Chr2:51703324-51703343 MsG0280009421.01.T01:CDS 30.0%
TTATTGCGCAGTATTGTAAA+TGG + Chr2:51702740-51702759 MsG0280009421.01.T01:intron 30.0%
! CGTGTTATATTGTTTTCATG+AGG + Chr2:51703427-51703446 MsG0280009421.01.T01:CDS 30.0%
! GGATGCTTTTCTATGTTTTA+GGG + Chr2:51703169-51703188 MsG0280009421.01.T01:CDS 30.0%
! GTCTGTTGTTTGTTAAATCT+GGG + Chr2:51702534-51702553 MsG0280009421.01.T01:intron 30.0%
! TGGATGCTTTTCTATGTTTT+AGG + Chr2:51703168-51703187 MsG0280009421.01.T01:CDS 30.0%
! TGTCTGTTGTTTGTTAAATC+TGG + Chr2:51702533-51702552 MsG0280009421.01.T01:intron 30.0%
!! AAAACATAGAAAAGCATCCA+CGG - Chr2:51703168-51703187 None:intergenic 30.0%
!! AAGCTTTAAAAGAAACCGAA+GGG - Chr2:51702950-51702969 None:intergenic 30.0%
!! CTATTTTGGAAGGATTGAAA+AGG + Chr2:51703035-51703054 MsG0280009421.01.T01:CDS 30.0%
!!! TTGTTTTGGTTTTGCATTCA+TGG - Chr2:51702606-51702625 MsG0280009422.01.T01:CDS 30.0%
AACTCCTTTCTCTTCACAAA+AGG - Chr2:51702397-51702416 MsG0280009422.01.T01:intron 35.0%
AAGATCACCTTACATGCATA+TGG - Chr2:51702705-51702724 MsG0280009422.01.T01:CDS 35.0%
ACTCCTTTCTCTTCACAAAA+GGG - Chr2:51702396-51702415 MsG0280009422.01.T01:intron 35.0%
ACTGTCAATACCCTATTGAA+GGG + Chr2:51702575-51702594 MsG0280009421.01.T01:intron 35.0%
AGAACATGATGAAGAAGAAG+AGG - Chr2:51703488-51703507 None:intergenic 35.0%
AGTATAGGACTTCACATTTG+GGG - Chr2:51703208-51703227 None:intergenic 35.0%
ATAGATGCATTGTGCAAACA+CGG + Chr2:51702809-51702828 MsG0280009421.01.T01:CDS 35.0%
CAGTATAGGACTTCACATTT+GGG - Chr2:51703209-51703228 None:intergenic 35.0%
GATGAGTGGATGAAATAAGT+GGG - Chr2:51702886-51702905 None:intergenic 35.0%
GTTAACCATATCACTGTAAG+TGG - Chr2:51702851-51702870 MsG0280009422.01.T01:CDS 35.0%
TACTGTCAATACCCTATTGA+AGG + Chr2:51702574-51702593 MsG0280009421.01.T01:intron 35.0%
TCCGTTAATTACTGCAGTAT+AGG - Chr2:51703223-51703242 None:intergenic 35.0%
TGATGAGTGGATGAAATAAG+TGG - Chr2:51702887-51702906 None:intergenic 35.0%
! TATTGCCACTTACAGTGATA+TGG + Chr2:51702843-51702862 MsG0280009421.01.T01:CDS 35.0%
!! CAAGCTTTAAAAGAAACCGA+AGG - Chr2:51702951-51702970 None:intergenic 35.0%
!! GCAAACTCTAAACCTTGTTT+TGG - Chr2:51702620-51702639 MsG0280009422.01.T01:CDS 35.0%
!!! TTCTATGTTTTAGGGAGACT+TGG + Chr2:51703177-51703196 MsG0280009421.01.T01:CDS 35.0%
ACAAAGAGTAGTGCTTTCTC+AGG - Chr2:51703369-51703388 None:intergenic 40.0%
AGTAGCATACATTACCGCAT+CGG - Chr2:51702786-51702805 MsG0280009422.01.T01:CDS 40.0%
CGGATTTCTCAGATCTGAAA+AGG + Chr2:51703239-51703258 MsG0280009421.01.T01:CDS 40.0%
CTGTCAATACCCTATTGAAG+GGG + Chr2:51702576-51702595 MsG0280009421.01.T01:intron 40.0%
CTGTTGAGTACAACCAGATT+GGG - Chr2:51703102-51703121 None:intergenic 40.0%
CTTACATGCATATGGATCGA+AGG - Chr2:51702697-51702716 MsG0280009422.01.T01:CDS 40.0%
CTTCGATCCATATGCATGTA+AGG + Chr2:51702695-51702714 MsG0280009421.01.T01:intron 40.0%
GCAGTATAGGACTTCACATT+TGG - Chr2:51703210-51703229 None:intergenic 40.0%
GGCCATGAATTATTGATGAG+TGG - Chr2:51702900-51702919 None:intergenic 40.0%
GTGAAAATGATCGAAATCCG+TGG + Chr2:51703148-51703167 MsG0280009421.01.T01:CDS 40.0%
TGCATGTAAGGTGATCTTAG+CGG + Chr2:51702707-51702726 MsG0280009421.01.T01:intron 40.0%
TGGTAATATCTCAGGTGTCA+AGG + Chr2:51702760-51702779 MsG0280009421.01.T01:intron 40.0%
! ACACCCTTTTGTGAAGAGAA+AGG + Chr2:51702390-51702409 MsG0280009421.01.T01:CDS 40.0%
!!! CTCTGATGGACTATTTTGGA+AGG + Chr2:51703025-51703044 MsG0280009421.01.T01:CDS 40.0%
ATAGTCCATCAGAGAGCCAA+AGG - Chr2:51703019-51703038 None:intergenic 45.0%
ATTGGGAATACAGCCCAATC+TGG + Chr2:51703086-51703105 MsG0280009421.01.T01:CDS 45.0%
CATGACCAAAGACCTCCATA+AGG - Chr2:51703125-51703144 None:intergenic 45.0%
CATGGCATACCCCTTCAATA+GGG - Chr2:51702588-51702607 MsG0280009422.01.T01:CDS 45.0%
CTTGTTCCGGTTGCTTAACT+AGG - Chr2:51702927-51702946 None:intergenic 45.0%
GCTGTTGAGTACAACCAGAT+TGG - Chr2:51703103-51703122 None:intergenic 45.0%
GGTTGTACTCAACAGCCTTA+TGG + Chr2:51703107-51703126 MsG0280009421.01.T01:CDS 45.0%
TCATGGCATACCCCTTCAAT+AGG - Chr2:51702589-51702608 MsG0280009422.01.T01:CDS 45.0%
! AACAGCCTTATGGAGGTCTT+TGG + Chr2:51703117-51703136 MsG0280009421.01.T01:CDS 45.0%
! CAGGTTGAGCATTGCTTACT+AGG - Chr2:51703350-51703369 None:intergenic 45.0%
! TGTACTCAACAGCCTTATGG+AGG + Chr2:51703110-51703129 MsG0280009421.01.T01:CDS 45.0%
! TTCATGAGGGCTTGCTTTGA+AGG + Chr2:51703441-51703460 MsG0280009421.01.T01:CDS 45.0%
!! AGAGTTTGCTGCCAAGTTAC+AGG + Chr2:51702631-51702650 MsG0280009421.01.T01:intron 45.0%
!! GAGTTTGCTGCCAAGTTACA+GGG + Chr2:51702632-51702651 MsG0280009421.01.T01:intron 45.0%
!!! GGCTCTCTGATGGACTATTT+TGG + Chr2:51703021-51703040 MsG0280009421.01.T01:CDS 45.0%
CCACTGCCTAGTTAAGCAAC+CGG + Chr2:51702918-51702937 MsG0280009421.01.T01:CDS 50.0%
CTGCCAAGTTACAGGGTCTA+GGG + Chr2:51702639-51702658 MsG0280009421.01.T01:intron 50.0%
GAACCCTAGACCCTGTAACT+TGG - Chr2:51702645-51702664 MsG0280009422.01.T01:CDS 50.0%
! AGAAACCGAAGGGCTTGTTC+CGG - Chr2:51702940-51702959 None:intergenic 50.0%
!! TACCTCCTTTGGCTCTCTGA+TGG + Chr2:51703011-51703030 MsG0280009421.01.T01:CDS 50.0%
AGCAACCGGAACAAGCCCTT+CGG + Chr2:51702932-51702951 MsG0280009421.01.T01:CDS 55.0%
CCGGTTGCTTAACTAGGCAG+TGG - Chr2:51702921-51702940 None:intergenic 55.0%
GCTGCCAAGTTACAGGGTCT+AGG + Chr2:51702638-51702657 MsG0280009421.01.T01:intron 55.0%
GTCCATCAGAGAGCCAAAGG+AGG - Chr2:51703016-51703035 None:intergenic 55.0%
CTCAGGTGTCAAGGCCGATG+CGG + Chr2:51702769-51702788 MsG0280009421.01.T01:intron 60.0%
GCAGCGCTCTCTATCTGCGT+AGG + Chr2:51702419-51702438 MsG0280009421.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 51702346 51703515 51702346 ID=MsG0280009421.01;Name=MsG0280009421.01
Chr2 mRNA 51702346 51703515 51702346 ID=MsG0280009421.01.T01;Parent=MsG0280009421.01;Name=MsG0280009421.01.T01;_AED=0.13;_eAED=0.16;_QI=0|0|0|1|0|0.5|2|0|304
Chr2 exon 51702346 51702518 51702346 ID=MsG0280009421.01.T01:exon:8405;Parent=MsG0280009421.01.T01
Chr2 exon 51702774 51703515 51702774 ID=MsG0280009421.01.T01:exon:8406;Parent=MsG0280009421.01.T01
Chr2 CDS 51702346 51702518 51702346 ID=MsG0280009421.01.T01:cds;Parent=MsG0280009421.01.T01
Chr2 CDS 51702774 51703515 51702774 ID=MsG0280009421.01.T01:cds;Parent=MsG0280009421.01.T01
Gene Sequence

>MsG0280009421.01.T01

ATGATGAAGAAACGTACAGAAATTAAGGAGTTCAATGGGTTACTACACCCTTTTGTGAAGAGAAAGGAGTTCAGCAGCGCTCTCTATCTGCGTAGGTATCTTTTTATCAACAAAAGATACGATTCTCATACTTTGAATGTTCATATTAACTGTCTTTGCAACTTAAACTTAGGGTGTCAAGGCCGATGCGGTAATGTATGCTACTGTTATAGATGCATTGTGCAAACACGGTTGTGTTATGCTATTGCCACTTACAGTGATATGGTTAACGCGCATATTGAACCCACTTATTTCATCCACTCATCAATAATTCATGGCCACTGCCTAGTTAAGCAACCGGAACAAGCCCTTCGGTTTCTTTTAAAGCTTGTCTACACCAGATATTTTGACATCAAGTCATACTTAGATATTACCTCCTTTGGCTCTCTGATGGACTATTTTGGAAGGATTGAAAAGGCTTTGCTCTTACTTTCCATCATGATAAAATTGGGAATACAGCCCAATCTGGTTGTACTCAACAGCCTTATGGAGGTCTTTGGTCATGCGTGTGAAAATGATCGAAATCCGTGGATGCTTTTCTATGTTTTAGGGAGACTTGGATTCACCCCAAATGTGAAGTCCTATACTGCAGTAATTAACGGATTTCTCAGATCTGAAAAGGTTGATGATGCTTTGAAAATTTTAGATCACATGAAGTCTAAATACATCAACGTTGATCAGAAATTATTAACGTCTGTGGTAAATGGCCTAGTAAGCAATGCTCAACCTGAGAAAGCACTACTCTTTGTTGACATGTTCATAGAGAAAAAGTTTGAGGTCGACCTTCCGTGTTATATTGTTTTCATGAGGGCTTGCTTTGAAGGCAACGAACACAAACGTTTCTTCCTCTTCTTCTTCATCATGTTCTTTGTATAA

Protein sequence

>MsG0280009421.01.T01

MMKKRTEIKEFNGLLHPFVKRKEFSSALYLRRYLFINKRYDSHTLNVHINCLCNLNLGCQGRCGNVCYCYRCIVQTRLCYAIATYSDMVNAHIEPTYFIHSSIIHGHCLVKQPEQALRFLLKLVYTRYFDIKSYLDITSFGSLMDYFGRIEKALLLLSIMIKLGIQPNLVVLNSLMEVFGHACENDRNPWMLFYVLGRLGFTPNVKSYTAVINGFLRSEKVDDALKILDHMKSKYINVDQKLLTSVVNGLVSNAQPEKALLFVDMFIEKKFEVDLPCYIVFMRACFEGNEHKRFFLFFFIMFFV*