AlfalfaGEDB | MsG0580025742.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025742.01

KEGG: -
GO: -
PFAM: PF13839 PF14416

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025742.01.T01	RHN55026.1	90.123	486	16	3	1	454	1	486	0	898

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025742.01.T01	Q8VYR3	60.143	419	125	6	68	448	122	536	4.26E-176	507

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025742.01.T01	A0A396HNT4	90.123	486	16	3	1	454	1	486	0.0	898

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003403.01	MsG0580025742.01	0.803344	3.646163e-49	1.827792e-46
MsG0280007432.01	MsG0580025742.01	0.806364	8.528640e-50	4.620192e-47
MsG0280007506.01	MsG0580025742.01	0.802506	5.431782e-49	2.665402e-46
MsG0280007955.01	MsG0580025742.01	0.801507	8.717219e-49	4.170255e-46
MsG0380016864.01	MsG0580025742.01	0.814927	1.200858e-51	8.164055e-49
MsG0580025661.01	MsG0580025742.01	0.806154	9.438902e-50	5.086336e-47
MsG0580025668.01	MsG0580025742.01	0.808497	3.008844e-50	1.723055e-47
MsG0580025742.01	MsG0580027655.01	0.809381	1.946343e-50	1.141058e-47
MsG0580025742.01	MsG0580027925.01	0.816052	6.746351e-52	4.730469e-49
MsG0580025742.01	MsG0580029736.01	0.821331	4.273167e-53	3.466239e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025742.01.T01	MTR_5g033800	88.844	493	16	3	1	454	1	493	0.0	895
MsG0580025742.01.T01	MTR_5g033800	86.053	380	14	3	1	341	1	380	0.0	621
MsG0580025742.01.T01	MTR_8g069790	57.088	522	149	8	6	453	5	525	0.0	554
MsG0580025742.01.T01	MTR_0136s0010	49.000	400	163	4	87	445	111	510	1.41e-137	405
MsG0580025742.01.T01	MTR_7g093450	48.921	417	175	4	66	445	173	588	4.41e-135	402
MsG0580025742.01.T01	MTR_5g059400	49.315	365	146	4	129	454	164	528	2.87e-127	379
MsG0580025742.01.T01	MTR_1g116130	49.315	365	146	4	129	454	164	528	2.87e-127	379
MsG0580025742.01.T01	MTR_4g121560	50.146	343	132	4	140	445	114	454	1.59e-122	365
MsG0580025742.01.T01	MTR_4g126950	44.729	351	157	3	130	445	99	447	2.43e-116	349
MsG0580025742.01.T01	MTR_7g109550	40.000	445	210	9	53	450	38	472	1.60e-103	317

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025742.01.T01	AT1G60790	60.143	419	125	6	68	448	122	536	4.34e-177	507
MsG0580025742.01.T01	AT5G06700	53.666	341	123	2	140	445	255	595	2.53e-135	402
MsG0580025742.01.T01	AT3G12060	53.079	341	125	2	140	445	196	536	2.06e-130	388
MsG0580025742.01.T01	AT5G49340	50.425	353	138	3	130	445	90	442	6.48e-127	376
MsG0580025742.01.T01	AT5G20590	48.397	343	137	5	140	445	141	480	1.57e-119	358
MsG0580025742.01.T01	AT3G62390	42.742	372	172	5	109	445	107	472	1.74e-103	317
MsG0580025742.01.T01	AT5G19160	41.711	374	162	7	121	447	83	447	8.79e-93	288
MsG0580025742.01.T01	AT3G06080	42.165	351	155	7	140	447	103	448	3.17e-87	275
MsG0580025742.01.T01	AT1G29050	36.286	350	180	4	123	444	44	378	1.50e-80	254
MsG0580025742.01.T01	AT5G58600	36.950	341	175	8	140	445	66	401	1.41e-79	253

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Find 118 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTGATATATTTGAT+GGG	0.611221	5:-23574041	MsG0580025742.01.T01:CDS
AAAGTTGCGAGGACAGAGGT+TGG	0.564621	5:-23572768	MsG0580025742.01.T01:CDS
AACAAATTCTACAGCTATCA+TGG	0.433157	5:+23569927	None:intergenic
AACACCAAGATTGTAGCCAT+TGG	0.569035	5:-23570216	MsG0580025742.01.T01:CDS
AAGAGGAGTGATTGAAACGT+TGG	0.532254	5:+23574278	None:intergenic
AAGTGATCTCCTTTATATAT+TGG	0.322525	5:+23570406	None:intergenic
AAGTGGAAATGGAAGCCAAA+TGG	0.542098	5:-23573910	MsG0580025742.01.T01:CDS
AAGTTCTGGATGCATATACA+AGG	0.565697	5:-23571886	MsG0580025742.01.T01:CDS
ACAATCTTGGTGTTGCTCCG+CGG	0.671013	5:+23570225	None:intergenic
ACCCACGAGAAAACATCTAG+GGG	0.706296	5:-23572341	MsG0580025742.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACCAGGTTCTTCATTA+AGG	+	Chr5:23573650-23573669	None:intergenic	30.0%
AACAAATTCTACAGCTATCA+TGG	+	Chr5:23574361-23574380	None:intergenic	30.0%
ACACACATGATAATTTGGAA+TGG	+	Chr5:23572079-23572098	None:intergenic	30.0%
AGAAATATTAAAGCACACTG+GGG	-	Chr5:23572902-23572921	MsG0580025742.01.T01:intron	30.0%
AGAACCATGATAAAGGAAAT+TGG	-	Chr5:23570721-23570740	MsG0580025742.01.T01:intron	30.0%
AGAGAAGACTATTATCAAGA+AGG	-	Chr5:23572353-23572372	MsG0580025742.01.T01:CDS	30.0%
AGATCATAGTCTTCAATACA+GGG	-	Chr5:23571912-23571931	MsG0580025742.01.T01:CDS	30.0%
ATAGCAAGTCCAGATTATTT+CGG	+	Chr5:23572546-23572565	None:intergenic	30.0%
CAAGAACCCAAATCATAATA+TGG	+	Chr5:23570294-23570313	None:intergenic	30.0%
CACTTAACATAATCACTATC+AGG	+	Chr5:23570360-23570379	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	23569764	23574543	23569764	ID=MsG0580025742.01;Name=MsG0580025742.01
Chr5	mRNA	23569764	23574543	23569764	ID=MsG0580025742.01.T01;Parent=MsG0580025742.01;Name=MsG0580025742.01.T01;_AED=0.37;_eAED=0.37;_QI=68\|0.75\|0.8\|1\|1\|1\|5\|368\|454
Chr5	exon	23569764	23570474	23569764	ID=MsG0580025742.01.T01:exon:4422;Parent=MsG0580025742.01.T01
Chr5	exon	23571794	23571952	23571794	ID=MsG0580025742.01.T01:exon:4421;Parent=MsG0580025742.01.T01
Chr5	exon	23572341	23572531	23572341	ID=MsG0580025742.01.T01:exon:4420;Parent=MsG0580025742.01.T01
Chr5	exon	23572724	23572814	23572724	ID=MsG0580025742.01.T01:exon:4419;Parent=MsG0580025742.01.T01
Chr5	exon	23573895	23574543	23573895	ID=MsG0580025742.01.T01:exon:4418;Parent=MsG0580025742.01.T01
Chr5	five_prime_UTR	23574476	23574543	23574476	ID=MsG0580025742.01.T01:five_prime_utr;Parent=MsG0580025742.01.T01
Chr5	CDS	23573895	23574475	23573895	ID=MsG0580025742.01.T01:cds;Parent=MsG0580025742.01.T01
Chr5	CDS	23572724	23572814	23572724	ID=MsG0580025742.01.T01:cds;Parent=MsG0580025742.01.T01
Chr5	CDS	23572341	23572531	23572341	ID=MsG0580025742.01.T01:cds;Parent=MsG0580025742.01.T01
Chr5	CDS	23571794	23571952	23571794	ID=MsG0580025742.01.T01:cds;Parent=MsG0580025742.01.T01
Chr5	CDS	23570132	23570474	23570132	ID=MsG0580025742.01.T01:cds;Parent=MsG0580025742.01.T01
Chr5	three_prime_UTR	23569764	23570131	23569764	ID=MsG0580025742.01.T01:three_prime_utr;Parent=MsG0580025742.01.T01

Gene Sequence

>MsG0580025742.01.T01

ATGGAATGGAACAAGAGAATAACATTCTCAGAACCCTTTTCATCACACAGAAGAAAAGTGTTATCTGGTTTCACTTTAGGTCTTGTTGCTTCTCTTCTCTTTCTCTCTCTTCTCTTCCTCAACTCTTCTTCATTCTCTGAATGGCATTTTCCATTCTCCAATTTATCTCCTTCCTCCAACGTTTCAATCACTCCTCTTTACACAATTCATCAACAACAATTGAGTAAAATCCCCGAAGTTAATGTTTCAAATCAGGGTTTTCAGAATACCCTTTTGGGGAATTTTACTGAAAATGGTTATAATGCAAGTTTTGAATCAAATGGGGTTGATAAAGTTGGAAACTTTTCTGTTGGGAAAGGTGAAATTGATGGGAATTTGAGTGGTACTGTGGAAGAAAATGTGAAATTTGATGAAAAGTGTGATATATTTGATGGGAATTGGGTGAGAGATGATTCAAAGCCATATTATGATTTGGGTTCTTGTCCATTTGTGGATAGGGATTTTGATTGTCATCTTAATGGTAGACCTGATAGTGATTATGTTAAGTGGAAATGGAAGCCAAATGGGTGTGATATTCCAAGTTTGAATGCAACTGATTTTCTGGAAAAGTTGCGAGGACAGAGGTTGGTTTTCGTCGGGGATTCACTAAACAGGAACATGTGGGAGTCCATGGATTATAATTGTTCAGTAGATTTTGTGAGTTCACCATTCATTGTTCAAGAGTCGACTTTCATAGGCGTAAATGGGTCATTTGAGACATTAAGATTGGATTTGATGGACCAGACAACTTCCACGTATCATGATGCTGAGATCATAGTCTTCAATACAGGGCATTGGTGGACCCACGAGAAAACATCTAGGGGAGAAGACTATTATCAAGAAGGCAACCATGTATACCCAAGACTCAAAGTTCTGGATGCATATACAAGGGCATTGAAAACTTGGGCTAGATGGATTGACAACAATATTGACGCAAATCGAACACATGTTTTCTTCAGAGGATACTCAGTTACTCATTTCAGGGGTGGGCAATGGAATTCAGGAGGACAGTGCCACAAAGAAACCGAGCCAATATATAAAGGAGATCACTTACGGAAATATCCGTCGAAAATGAGGGCTTTAGATTATGTCATCCCAAAGATGAAAACTCCGGTTATATATATGAACATAAGTAGGATGACAGATTACCGAAAAGACGCCCATCCTTCAATATACAGAATGGAATACAAGACAGAAGCAGAACGAACCACCGCGGAGCAACACCAAGATTGTAGCCATTGGTGCTTACCAGGAGTACCGGATACCTGGAACGAATTACTCTATGCTTCTCTCTTAAAAAATGGTAAAGGGAATTGGAAAAGTTGA

Protein sequence

>MsG0580025742.01.T01

MEWNKRITFSEPFSSHRRKVLSGFTLGLVASLLFLSLLFLNSSSFSEWHFPFSNLSPSSNVSITPLYTIHQQQLSKIPEVNVSNQGFQNTLLGNFTENGYNASFESNGVDKVGNFSVGKGEIDGNLSGTVEENVKFDEKCDIFDGNWVRDDSKPYYDLGSCPFVDRDFDCHLNGRPDSDYVKWKWKPNGCDIPSLNATDFLEKLRGQRLVFVGDSLNRNMWESMDYNCSVDFVSSPFIVQESTFIGVNGSFETLRLDLMDQTTSTYHDAEIIVFNTGHWWTHEKTSRGEDYYQEGNHVYPRLKVLDAYTRALKTWARWIDNNIDANRTHVFFRGYSVTHFRGGQWNSGGQCHKETEPIYKGDHLRKYPSKMRALDYVIPKMKTPVIYMNISRMTDYRKDAHPSIYRMEYKTEAERTTAEQHQDCSHWCLPGVPDTWNELLYASLLKNGKGNWKS*