Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003403.01.T01 | XP_013468051.1 | 96.325 | 517 | 5 | 3 | 1 | 509 | 1 | 511 | 0 | 1031 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003403.01.T01 | Q9LZS0 | 57.003 | 307 | 106 | 8 | 129 | 413 | 119 | 421 | 5.24E-99 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003403.01.T01 | A0A072VKX9 | 96.325 | 517 | 5 | 3 | 1 | 509 | 1 | 511 | 0.0 | 1031 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180003403.01.T01 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048856.01 | MsG0180003403.01 | 0.811698 | 6.145162e-51 | 3.829913e-48 |
| MsG0180000139.01 | MsG0180003403.01 | 0.817300 | 3.541388e-52 | 2.569252e-49 |
| MsG0180000470.01 | MsG0180003403.01 | 0.801781 | 7.655862e-49 | 3.687977e-46 |
| MsG0180000835.01 | MsG0180003403.01 | 0.814312 | 1.642572e-51 | 1.098452e-48 |
| MsG0180001886.01 | MsG0180003403.01 | 0.807950 | 3.934264e-50 | 2.220780e-47 |
| MsG0180001892.01 | MsG0180003403.01 | 0.846409 | 2.212023e-59 | 3.804079e-56 |
| MsG0180003403.01 | MsG0180003455.01 | 0.811346 | 7.331900e-51 | 4.527153e-48 |
| MsG0180003403.01 | MsG0180003943.01 | 0.817519 | 3.162023e-52 | 2.307919e-49 |
| MsG0180003403.01 | MsG0180003951.01 | 0.827633 | 1.404484e-54 | 1.363468e-51 |
| MsG0180003403.01 | MsG0180004152.01 | 0.820707 | 5.948579e-53 | 4.741924e-50 |
| MsG0180003403.01 | MsG0180004389.01 | 0.819639 | 1.045174e-52 | 8.087954e-50 |
| MsG0180003403.01 | MsG0180004481.01 | 0.841435 | 4.759496e-58 | 6.993369e-55 |
| MsG0180003403.01 | MsG0180004482.01 | 0.841918 | 3.550300e-58 | 5.295299e-55 |
| MsG0180003403.01 | MsG0180004509.01 | 0.821068 | 4.914491e-53 | 3.957666e-50 |
| MsG0180003403.01 | MsG0180004765.01 | 0.809256 | 2.069679e-50 | 1.209305e-47 |
| MsG0180003403.01 | MsG0180004928.01 | 0.819819 | 9.505702e-53 | 7.393348e-50 |
| MsG0180003403.01 | MsG0180005153.01 | 0.813219 | 2.859659e-51 | 1.856246e-48 |
| MsG0180003403.01 | MsG0180005575.01 | 0.852445 | 4.596056e-61 | 9.605618e-58 |
| MsG0180003403.01 | MsG0180006024.01 | 0.824355 | 8.442827e-54 | 7.460128e-51 |
| MsG0180003403.01 | MsG0280006324.01 | 0.804825 | 1.793713e-49 | 9.341845e-47 |
| MsG0180003403.01 | MsG0280006405.01 | 0.804808 | 1.808566e-49 | 9.415027e-47 |
| MsG0180003403.01 | MsG0280007452.01 | 0.816284 | 5.986672e-52 | 4.224447e-49 |
| MsG0180003403.01 | MsG0280007506.01 | 0.828341 | 9.485535e-55 | 9.401337e-52 |
| MsG0180003403.01 | MsG0280007955.01 | 0.859545 | 3.842055e-63 | 1.018401e-59 |
| MsG0180003403.01 | MsG0280008076.01 | 0.806152 | 9.450306e-50 | 5.092183e-47 |
| MsG0180003403.01 | MsG0280008377.01 | 0.807592 | 4.689111e-50 | 2.622065e-47 |
| MsG0180003403.01 | MsG0280008457.01 | 0.824443 | 8.047687e-54 | 7.129039e-51 |
| MsG0180003403.01 | MsG0280010366.01 | 0.814757 | 1.309341e-51 | 8.861305e-49 |
| MsG0180003403.01 | MsG0280010778.01 | 0.807093 | 5.979860e-50 | 3.300911e-47 |
| MsG0180003403.01 | MsG0280010788.01 | 0.826712 | 2.334289e-54 | 2.206183e-51 |
| MsG0180003403.01 | MsG0280010992.01 | 0.803767 | 2.979433e-49 | 1.509942e-46 |
| MsG0180003403.01 | MsG0280011101.01 | 0.807928 | 3.977702e-50 | 2.243876e-47 |
| MsG0180003403.01 | MsG0280011319.01 | 0.807580 | 4.716228e-50 | 2.636411e-47 |
| MsG0180003403.01 | MsG0280011329.01 | 0.840206 | 9.996227e-58 | 1.413799e-54 |
| MsG0180003403.01 | MsG0280011339.01 | 0.814900 | 1.217339e-51 | 8.270307e-49 |
| MsG0180003403.01 | MsG0380011496.01 | 0.803601 | 3.224605e-49 | 1.627298e-46 |
| MsG0180003403.01 | MsG0380011501.01 | 0.815397 | 9.442416e-52 | 6.502670e-49 |
| MsG0180003403.01 | MsG0380012067.01 | 0.803824 | 2.898423e-49 | 1.471069e-46 |
| MsG0180003403.01 | MsG0380012103.01 | 0.800126 | 1.668382e-48 | 7.707192e-46 |
| MsG0180003403.01 | MsG0380013183.01 | 0.805554 | 1.262297e-49 | 6.697922e-47 |
| MsG0180003403.01 | MsG0380013475.01 | 0.805963 | 1.035777e-49 | 5.554319e-47 |
| MsG0180003403.01 | MsG0380014221.01 | 0.829661 | 4.544047e-55 | 4.681239e-52 |
| MsG0180003403.01 | MsG0380014703.01 | 0.803535 | 3.328330e-49 | 1.676829e-46 |
| MsG0180003403.01 | MsG0380015332.01 | 0.815460 | 9.143073e-52 | 6.307723e-49 |
| MsG0180003403.01 | MsG0380015555.01 | 0.807038 | 6.144944e-50 | 3.387209e-47 |
| MsG0180003403.01 | MsG0380015786.01 | 0.826764 | 2.267609e-54 | 2.146471e-51 |
| MsG0180003403.01 | MsG0380015875.01 | 0.812133 | 4.941466e-51 | 3.116119e-48 |
| MsG0180003403.01 | MsG0380015944.01 | 0.800603 | 1.333849e-48 | 6.236858e-46 |
| MsG0180003403.01 | MsG0380016247.01 | 0.811173 | 7.990877e-51 | 4.911890e-48 |
| MsG0180003403.01 | MsG0380016970.01 | 0.828476 | 8.800590e-55 | 8.757379e-52 |
| MsG0180003403.01 | MsG0480018163.01 | 0.802791 | 4.743307e-49 | 2.344618e-46 |
| MsG0180003403.01 | MsG0480018465.01 | 0.807275 | 5.473017e-50 | 3.035553e-47 |
| MsG0180003403.01 | MsG0480018894.01 | 0.802140 | 6.461699e-49 | 3.141264e-46 |
| MsG0180003403.01 | MsG0480019206.01 | 0.801748 | 7.777891e-49 | 3.743549e-46 |
| MsG0180003403.01 | MsG0480019416.01 | 0.802187 | 6.317554e-49 | 3.074877e-46 |
| MsG0180003403.01 | MsG0480020780.01 | 0.828329 | 9.553295e-55 | 9.465045e-52 |
| MsG0180003403.01 | MsG0480021056.01 | 0.852225 | 5.309151e-61 | 1.101873e-57 |
| MsG0180003403.01 | MsG0480021465.01 | 0.809332 | 1.994056e-50 | 1.167467e-47 |
| MsG0180003403.01 | MsG0480022054.01 | 0.820923 | 5.305606e-53 | 4.255192e-50 |
| MsG0180003403.01 | MsG0480022788.01 | 0.819162 | 1.342307e-52 | 1.025004e-49 |
| MsG0180003403.01 | MsG0480023463.01 | 0.814996 | 1.159023e-51 | 7.895107e-49 |
| MsG0180003403.01 | MsG0480023601.01 | 0.803776 | 2.965793e-49 | 1.503389e-46 |
| MsG0180003403.01 | MsG0580024197.01 | 0.838665 | 2.512964e-57 | 3.389273e-54 |
| MsG0180003403.01 | MsG0580024497.01 | 0.801678 | 8.041289e-49 | 3.863415e-46 |
| MsG0180003403.01 | MsG0580024952.01 | 0.821001 | 5.092396e-53 | 4.093345e-50 |
| MsG0180003403.01 | MsG0580025135.01 | 0.806066 | 9.852529e-50 | 5.297256e-47 |
| MsG0180003403.01 | MsG0580025332.01 | 0.825111 | 5.601677e-54 | 5.058599e-51 |
| MsG0180003403.01 | MsG0580025357.01 | -0.801663 | 8.096694e-49 | 3.888602e-46 |
| MsG0180003403.01 | MsG0580025587.01 | 0.814446 | 1.534645e-51 | 1.029953e-48 |
| MsG0180003403.01 | MsG0580025661.01 | 0.801037 | 1.087721e-48 | 5.142563e-46 |
| MsG0180003403.01 | MsG0580025742.01 | 0.803344 | 3.646163e-49 | 1.827792e-46 |
| MsG0180003403.01 | MsG0580026059.01 | 0.805982 | 1.026350e-49 | 5.506500e-47 |
| MsG0180003403.01 | MsG0580026086.01 | 0.807718 | 4.408751e-50 | 2.473546e-47 |
| MsG0180003403.01 | MsG0580027616.01 | 0.803309 | 3.706921e-49 | 1.856586e-46 |
| MsG0180003403.01 | MsG0580027925.01 | 0.838944 | 2.128089e-57 | 2.894532e-54 |
| MsG0180003403.01 | MsG0580028407.01 | 0.816011 | 6.889435e-52 | 4.825184e-49 |
| MsG0180003403.01 | MsG0580028436.01 | 0.810543 | 1.093865e-50 | 6.611902e-48 |
| MsG0180003403.01 | MsG0580029236.01 | 0.807224 | 5.612456e-50 | 3.108689e-47 |
| MsG0180003403.01 | MsG0580029736.01 | 0.818901 | 1.539254e-52 | 1.167089e-49 |
| MsG0180003403.01 | MsG0580029925.01 | 0.803761 | 2.988104e-49 | 1.514115e-46 |
| MsG0180003403.01 | MsG0680030447.01 | 0.817731 | 2.832556e-52 | 2.079515e-49 |
| MsG0180003403.01 | MsG0680031263.01 | 0.828236 | 1.005724e-54 | 9.937820e-52 |
| MsG0180003403.01 | MsG0680031264.01 | 0.843664 | 1.219596e-58 | 1.921859e-55 |
| MsG0180003403.01 | MsG0680031617.01 | 0.828991 | 6.606070e-55 | 6.672334e-52 |
| MsG0180003403.01 | MsG0680031621.01 | 0.854137 | 1.503763e-61 | 3.325957e-58 |
| MsG0180003403.01 | MsG0680032771.01 | 0.806224 | 9.127812e-50 | 4.927528e-47 |
| MsG0180003403.01 | MsG0680034234.01 | 0.802347 | 5.857377e-49 | 2.862683e-46 |
| MsG0180003403.01 | MsG0680034853.01 | 0.808649 | 2.792001e-50 | 1.605149e-47 |
| MsG0180003403.01 | MsG0680035475.01 | 0.803936 | 2.747348e-49 | 1.398511e-46 |
| MsG0180003403.01 | MsG0780035979.01 | 0.802877 | 4.553288e-49 | 2.255502e-46 |
| MsG0180003403.01 | MsG0780036757.01 | 0.800053 | 1.726157e-48 | 7.959279e-46 |
| MsG0180003403.01 | MsG0780037054.01 | 0.834566 | 2.783982e-56 | 3.316658e-53 |
| MsG0180003403.01 | MsG0780037240.01 | 0.814404 | 1.567375e-51 | 1.050793e-48 |
| MsG0180003403.01 | MsG0780039063.01 | 0.804854 | 1.768900e-49 | 9.219502e-47 |
| MsG0180003403.01 | MsG0780039139.01 | 0.815397 | 9.442297e-52 | 6.502600e-49 |
| MsG0180003403.01 | MsG0780039170.01 | 0.833946 | 3.981141e-56 | 4.655757e-53 |
| MsG0180003403.01 | MsG0780039443.01 | 0.824636 | 7.249340e-54 | 6.458788e-51 |
| MsG0180003403.01 | MsG0780039940.01 | 0.811594 | 6.476857e-51 | 4.025516e-48 |
| MsG0180003403.01 | MsG0780040846.01 | 0.813675 | 2.270045e-51 | 1.492025e-48 |
| MsG0180003403.01 | MsG0780041016.01 | 0.807238 | 5.573959e-50 | 3.088536e-47 |
| MsG0180003403.01 | MsG0780041083.01 | 0.821468 | 3.972674e-53 | 3.234639e-50 |
| MsG0180003403.01 | MsG0780041440.01 | 0.825774 | 3.902130e-54 | 3.591068e-51 |
| MsG0180003403.01 | MsG0780041448.01 | 0.807160 | 5.788602e-50 | 3.200903e-47 |
| MsG0180003403.01 | MsG0880043521.01 | 0.805081 | 1.585526e-49 | 8.311764e-47 |
| MsG0180003403.01 | MsG0880043937.01 | 0.804212 | 2.408048e-49 | 1.234359e-46 |
| MsG0180003403.01 | MsG0880044210.01 | 0.801264 | 9.772869e-49 | 4.646807e-46 |
| MsG0180003403.01 | MsG0880045145.01 | 0.818317 | 2.087447e-52 | 1.557324e-49 |
| MsG0180003403.01 | MsG0880045164.01 | 0.832796 | 7.706423e-56 | 8.705730e-53 |
| MsG0180003403.01 | MsG0880045607.01 | 0.820507 | 6.612633e-53 | 5.242105e-50 |
| MsG0180003403.01 | MsG0880045735.01 | 0.825094 | 5.653434e-54 | 5.103026e-51 |
| MsG0180003403.01 | MsG0880046004.01 | 0.803604 | 3.221069e-49 | 1.625612e-46 |
| MsG0180003403.01 | MsG0880046820.01 | 0.802164 | 6.389531e-49 | 3.108109e-46 |
| MsG0180003403.01 | MsG0880047472.01 | 0.806733 | 7.127487e-50 | 3.897983e-47 |
| MsG0180003403.01 | MsG0880047473.01 | 0.822443 | 2.362772e-53 | 1.977975e-50 |
| MsG0180003403.01 | MsG0880047764.01 | 0.818146 | 2.282735e-52 | 1.694956e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003403.01.T01 | MTR_1g060990 | 96.325 | 517 | 5 | 3 | 1 | 509 | 1 | 511 | 0.0 | 1031 |
| MsG0180003403.01.T01 | MTR_1g492790 | 39.850 | 399 | 172 | 14 | 19 | 372 | 10 | 385 | 8.35e-78 | 253 |
| MsG0180003403.01.T01 | MTR_6g035370 | 38.567 | 293 | 133 | 5 | 122 | 368 | 46 | 337 | 8.24e-41 | 155 |
| MsG0180003403.01.T01 | MTR_6g035370 | 47.312 | 93 | 47 | 2 | 125 | 216 | 460 | 551 | 7.16e-20 | 93.6 |
| MsG0180003403.01.T01 | MTR_1g098870 | 32.542 | 295 | 162 | 4 | 129 | 395 | 55 | 340 | 1.56e-35 | 140 |
| MsG0180003403.01.T01 | MTR_1g098870 | 40.458 | 131 | 71 | 4 | 118 | 247 | 361 | 485 | 4.28e-22 | 100 |
| MsG0180003403.01.T01 | MTR_1g098900 | 65.263 | 95 | 30 | 2 | 123 | 215 | 49 | 142 | 1.51e-32 | 132 |
| MsG0180003403.01.T01 | MTR_1g098900 | 46.000 | 100 | 51 | 3 | 120 | 218 | 446 | 543 | 2.79e-20 | 94.7 |
| MsG0180003403.01.T01 | MTR_1g098900 | 39.535 | 86 | 52 | 0 | 283 | 368 | 272 | 357 | 2.11e-13 | 73.2 |
| MsG0180003403.01.T01 | MTR_1g081180 | 29.046 | 241 | 145 | 8 | 130 | 364 | 104 | 324 | 2.19e-14 | 76.3 |
| MsG0180003403.01.T01 | MTR_1g081180 | 37.607 | 117 | 58 | 4 | 129 | 231 | 418 | 533 | 3.34e-12 | 69.3 |
| MsG0180003403.01.T01 | MTR_7g114860 | 36.220 | 127 | 70 | 3 | 102 | 218 | 354 | 479 | 2.26e-14 | 75.9 |
| MsG0180003403.01.T01 | MTR_2g026725 | 38.053 | 113 | 65 | 3 | 124 | 232 | 257 | 368 | 5.31e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003403.01.T01 | AT5G03680 | 57.003 | 307 | 106 | 8 | 129 | 413 | 119 | 421 | 5.35e-100 | 313 |
| MsG0180003403.01.T01 | AT3G10000 | 43.946 | 446 | 199 | 13 | 96 | 506 | 49 | 478 | 1.17e-98 | 306 |
| MsG0180003403.01.T01 | AT3G10000 | 42.094 | 449 | 198 | 15 | 96 | 509 | 49 | 470 | 2.56e-88 | 279 |
| MsG0180003403.01.T01 | AT1G76890 | 33.654 | 312 | 135 | 7 | 122 | 368 | 34 | 338 | 1.54e-39 | 151 |
| MsG0180003403.01.T01 | AT1G76890 | 45.098 | 102 | 54 | 2 | 126 | 226 | 394 | 494 | 3.55e-19 | 91.3 |
| MsG0180003403.01.T01 | AT1G76880 | 63.918 | 97 | 32 | 2 | 129 | 225 | 61 | 154 | 1.44e-31 | 129 |
| MsG0180003403.01.T01 | AT1G76880 | 44.538 | 119 | 55 | 4 | 110 | 218 | 380 | 497 | 9.13e-19 | 90.1 |
| MsG0180003403.01.T01 | AT1G33240 | 64.368 | 87 | 30 | 1 | 129 | 215 | 62 | 147 | 1.31e-29 | 123 |
| MsG0180003403.01.T01 | AT1G33240 | 43.820 | 89 | 48 | 2 | 129 | 216 | 435 | 522 | 2.04e-16 | 82.8 |
| MsG0180003403.01.T01 | AT1G33240 | 64.368 | 87 | 30 | 1 | 129 | 215 | 62 | 147 | 1.73e-29 | 123 |
| MsG0180003403.01.T01 | AT1G33240 | 43.820 | 89 | 48 | 2 | 129 | 216 | 435 | 522 | 1.90e-16 | 82.8 |
| MsG0180003403.01.T01 | AT1G33240 | 43.820 | 89 | 48 | 2 | 129 | 216 | 396 | 483 | 2.24e-16 | 82.4 |
| MsG0180003403.01.T01 | AT1G33240 | 72.340 | 47 | 13 | 0 | 169 | 215 | 62 | 108 | 2.97e-15 | 79.0 |
| MsG0180003403.01.T01 | AT5G28300 | 39.604 | 101 | 49 | 4 | 129 | 218 | 459 | 558 | 1.50e-12 | 70.5 |
| MsG0180003403.01.T01 | AT5G47660 | 42.857 | 91 | 44 | 4 | 129 | 216 | 303 | 388 | 1.84e-11 | 66.2 |
Find 141 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTAGCTTCTTTAAATTT+AGG | 0.106926 | 1:-61805934 | None:intergenic |
| ACATGTATTTGATGTGTTTA+AGG | 0.119061 | 1:+61808332 | MsG0180003403.01.T01:three_prime_UTR |
| GGAAATTTGTGGGAGAATTT+TGG | 0.154763 | 1:+61808087 | MsG0180003403.01.T01:CDS |
| ATTATTGTTGTTGACAAAAT+TGG | 0.173365 | 1:-61807296 | None:intergenic |
| GGAAAAGTTCACTTGCTTAT+TGG | 0.193573 | 1:+61808405 | MsG0180003403.01.T01:three_prime_UTR |
| CTCTCATCAGTTAATGGTTT+TGG | 0.213143 | 1:-61808131 | None:intergenic |
| CCGTCGGTATAGATGGAAAA+TGG | 0.215482 | 1:-61805585 | None:intergenic |
| TCCTGAGACCACAGGTTATA+TGG | 0.215513 | 1:+61805837 | MsG0180003403.01.T01:CDS |
| CATAAACTCTCATCAGTTAA+TGG | 0.217027 | 1:-61808137 | None:intergenic |
| ATGGAAGCTTTGAAGAATTT+AGG | 0.224314 | 1:+61807694 | MsG0180003403.01.T01:CDS |
| AGCAAGGGATGCTGCTTTAA+TGG | 0.232544 | 1:+61807675 | MsG0180003403.01.T01:CDS |
| CGTCAACTTGAAGCTTTATA+TGG | 0.241815 | 1:+61807241 | MsG0180003403.01.T01:CDS |
| GATTAGCTTCTTTAAATTTA+GGG | 0.283381 | 1:-61805933 | None:intergenic |
| GGCATGATGGTAAGCATTAC+AGG | 0.285238 | 1:+61807212 | MsG0180003403.01.T01:CDS |
| ATGATTCTAAAGAAGGAAAT+AGG | 0.287382 | 1:+61807863 | MsG0180003403.01.T01:CDS |
| CATGTATTTGATGTGTTTAA+GGG | 0.291153 | 1:+61808333 | MsG0180003403.01.T01:three_prime_UTR |
| TTGTTGACAAAATTGGTTTC+TGG | 0.294784 | 1:-61807289 | None:intergenic |
| TATGATCATTGTGAGGGTTT+TGG | 0.304071 | 1:-61807345 | None:intergenic |
| AGGAGGTAGAGAAATGATTA+AGG | 0.310468 | 1:+61807714 | MsG0180003403.01.T01:CDS |
| TCTCATACTGTTGTTGTTGT+TGG | 0.335695 | 1:-61805693 | None:intergenic |
| GCTTCTTTAGTGTGCTGTTT+GGG | 0.336131 | 1:+61808567 | MsG0180003403.01.T01:three_prime_UTR |
| TTTGGCTATTACTTGTTTGT+TGG | 0.348056 | 1:-61807327 | None:intergenic |
| GTTGTTGTTATTGTTGTTGA+AGG | 0.351204 | 1:-61805784 | None:intergenic |
| TTAGATCATATTGTTGTTGA+TGG | 0.360511 | 1:-61805534 | None:intergenic |
| CAAATACATGTTTGGAATCA+TGG | 0.367407 | 1:-61808320 | None:intergenic |
| AAGGGTGTAAATGTAATAAC+TGG | 0.373539 | 1:+61807757 | MsG0180003403.01.T01:CDS |
| GATCGATCTAAATCCATGTT+TGG | 0.373856 | 1:+61808184 | MsG0180003403.01.T01:three_prime_UTR |
| TGCTTCTTTAGTGTGCTGTT+TGG | 0.375364 | 1:+61808566 | MsG0180003403.01.T01:three_prime_UTR |
| AAACACATCAAATACATGTT+TGG | 0.382363 | 1:-61808328 | None:intergenic |
| TATTACTTGTTTGTTGGAAA+TGG | 0.383105 | 1:-61807321 | None:intergenic |
| TGGTTTCTGGTAGAGAAGTT+TGG | 0.387708 | 1:-61807276 | None:intergenic |
| GTTTCTGTGTACTGATCATA+TGG | 0.392340 | 1:+61808619 | MsG0180003403.01.T01:three_prime_UTR |
| TTTACTTTAATGCATGAAGA+TGG | 0.394689 | 1:+61808455 | MsG0180003403.01.T01:three_prime_UTR |
| TTTAAAGAAGCTAATCAAAA+AGG | 0.402136 | 1:+61805940 | MsG0180003403.01.T01:CDS |
| GTAGCCGCCGTCGGTATAGA+TGG | 0.404666 | 1:-61805592 | None:intergenic |
| AGAGTAGTGGAAGAAGAAGT+TGG | 0.406533 | 1:+61807452 | MsG0180003403.01.T01:CDS |
| TCACCTTCTGATTCTAATGT+TGG | 0.411980 | 1:+61808015 | MsG0180003403.01.T01:CDS |
| TTAACAAAGCTGTCAGATTC+CGG | 0.414479 | 1:-61805636 | None:intergenic |
| GTTTGGATTGACAGTGAGTT+CGG | 0.419513 | 1:+61808201 | MsG0180003403.01.T01:three_prime_UTR |
| AGAGTAAGAGTTTCTTGTCT+TGG | 0.432446 | 1:-61805886 | None:intergenic |
| TGAAGAAGCTCATGATCATA+AGG | 0.433018 | 1:+61807738 | MsG0180003403.01.T01:CDS |
| CCCATATAACCTGTGGTCTC+AGG | 0.433556 | 1:-61805838 | None:intergenic |
| TTGAGTTAGTAGTGAGACTA+AGG | 0.450800 | 1:-61807369 | None:intergenic |
| ATTCAAAATCAAAATGAAGA+TGG | 0.456037 | 1:+61807787 | MsG0180003403.01.T01:CDS |
| TTTGGAGTAATGAGAGAGCA+TGG | 0.461952 | 1:+61807647 | MsG0180003403.01.T01:CDS |
| CAGTATGAGATGATGATGTT+AGG | 0.464776 | 1:+61805706 | MsG0180003403.01.T01:CDS |
| CCAAGGGATGATTCTAAAGA+AGG | 0.465100 | 1:+61807856 | MsG0180003403.01.T01:CDS |
| TATAGTTTGAAAGATGAGAT+AGG | 0.467565 | 1:-61805443 | None:intergenic |
| GTTTAGTGATGGAGATAAAG+TGG | 0.469595 | 1:+61808384 | MsG0180003403.01.T01:three_prime_UTR |
| GTTATTATGTTTACATCAGT+TGG | 0.471072 | 1:+61808518 | MsG0180003403.01.T01:three_prime_UTR |
| AAGACAAAAGAAGGTAAAGC+AGG | 0.472275 | 1:+61807187 | MsG0180003403.01.T01:CDS |
| TTGGAATATGACAAAAGATC+AGG | 0.472707 | 1:+61808424 | MsG0180003403.01.T01:three_prime_UTR |
| ATTGTTGTTGAAGGTGGTGG+TGG | 0.473372 | 1:-61805775 | None:intergenic |
| AGAAGGAAATAGGAAGAGAA+AGG | 0.474101 | 1:+61807873 | MsG0180003403.01.T01:CDS |
| GTTATTGTTGTTGAAGGTGG+TGG | 0.474694 | 1:-61805778 | None:intergenic |
| AATGTTGGAAATGTTGCTAA+TGG | 0.476371 | 1:+61808030 | MsG0180003403.01.T01:CDS |
| GGAGGAAACAAGAGGCCAAA+AGG | 0.485530 | 1:+61807605 | MsG0180003403.01.T01:CDS |
| TTACTTTAATGCATGAAGAT+GGG | 0.488805 | 1:+61808456 | MsG0180003403.01.T01:three_prime_UTR |
| AGCTGTCAGATTCCGGTGAC+CGG | 0.495878 | 1:-61805629 | None:intergenic |
| GTTGTTATTGTTGTTGAAGG+TGG | 0.496177 | 1:-61805781 | None:intergenic |
| GATACGTCGTCGTCTGATGA+TGG | 0.498562 | 1:+61807406 | MsG0180003403.01.T01:CDS |
| CTTTCCTTTCATGATTAGTG+AGG | 0.500450 | 1:+61808062 | MsG0180003403.01.T01:CDS |
| CCTGAGACCACAGGTTATAT+GGG | 0.501183 | 1:+61805838 | MsG0180003403.01.T01:CDS |
| GACACTTGAGGACAAGGAAA+AGG | 0.501629 | 1:+61807558 | MsG0180003403.01.T01:CDS |
| GATCTAAGACAGCTGGTGAA+TGG | 0.501998 | 1:+61805550 | MsG0180003403.01.T01:CDS |
| CATGTATATATGAGAGGCTA+GGG | 0.504957 | 1:-61805468 | None:intergenic |
| GGGCGTTAAGAGAAGAAGAG+TGG | 0.505945 | 1:+61807584 | MsG0180003403.01.T01:CDS |
| TCATGTATATATGAGAGGCT+AGG | 0.508330 | 1:-61805469 | None:intergenic |
| TTCAAAATCAAAATGAAGAT+GGG | 0.510698 | 1:+61807788 | MsG0180003403.01.T01:CDS |
| ATCTATACCGACGGCGGCTA+CGG | 0.512912 | 1:+61805594 | MsG0180003403.01.T01:CDS |
| CCTTCTTTAGAATCATCCCT+TGG | 0.513704 | 1:-61807856 | None:intergenic |
| CGTCGGTATAGATGGAAAAT+GGG | 0.516485 | 1:-61805584 | None:intergenic |
| GGTGATGACCATGATTGTTA+TGG | 0.516651 | 1:-61805507 | None:intergenic |
| CAATGCTCTATGTACAATCA+AGG | 0.518449 | 1:+61807922 | MsG0180003403.01.T01:CDS |
| CTAGAGACTTCATCCCATAA+AGG | 0.525783 | 1:-61805964 | None:intergenic |
| TTGTCTTGGCCATCTTCCAG+TGG | 0.530040 | 1:-61805872 | None:intergenic |
| TAGTGAGGGTGGAAATTTGT+GGG | 0.530887 | 1:+61808077 | MsG0180003403.01.T01:CDS |
| AATCTGTTCAAGTTTAGTGA+TGG | 0.532748 | 1:+61808373 | MsG0180003403.01.T01:three_prime_UTR |
| TTTCCTTTCATGATTAGTGA+GGG | 0.536493 | 1:+61808063 | MsG0180003403.01.T01:CDS |
| AAACTACAAAGGAATGATCA+TGG | 0.537652 | 1:+61807988 | MsG0180003403.01.T01:CDS |
| AACTCATCCGTAGCCGCCGT+CGG | 0.541672 | 1:-61805601 | None:intergenic |
| CATATTGTTGTTGATGGTGA+TGG | 0.543631 | 1:-61805528 | None:intergenic |
| TATTACAAGAAGACAAAAGA+AGG | 0.546022 | 1:+61807178 | MsG0180003403.01.T01:CDS |
| AAGGGAAAGAAGAAGAGTAG+TGG | 0.550255 | 1:+61807439 | MsG0180003403.01.T01:CDS |
| AAACATGGATTTAGATCGAT+CGG | 0.551290 | 1:-61808182 | None:intergenic |
| CTTTATGGGATGAAGTCTCT+AGG | 0.552690 | 1:+61805965 | MsG0180003403.01.T01:CDS |
| GATGACCACCATAACAATCA+TGG | 0.553172 | 1:+61805499 | MsG0180003403.01.T01:CDS |
| ACAATATGATCTAAGACAGC+TGG | 0.560078 | 1:+61805543 | MsG0180003403.01.T01:CDS |
| GAGATGCATCCACTGGAAGA+TGG | 0.561119 | 1:+61805863 | MsG0180003403.01.T01:CDS |
| GAGGAAACAAGAGGCCAAAA+GGG | 0.564460 | 1:+61807606 | MsG0180003403.01.T01:CDS |
| GAAGCTTTGAAGAATTTAGG+AGG | 0.565385 | 1:+61807697 | MsG0180003403.01.T01:CDS |
| ATGGGTGGAGATGCATCCAC+TGG | 0.565514 | 1:+61805856 | MsG0180003403.01.T01:CDS |
| GGTAAAGCAGGAAGGCATGA+TGG | 0.566904 | 1:+61807199 | MsG0180003403.01.T01:CDS |
| GTTCTGATAATTGTACTCCA+AGG | 0.568236 | 1:+61807839 | MsG0180003403.01.T01:CDS |
| GATGTAAACATAATAACTGA+AGG | 0.570199 | 1:-61808512 | None:intergenic |
| CTAAAGAAGCATGAGGGGAA+AGG | 0.570963 | 1:-61808554 | None:intergenic |
| TAGTGGAAGAAGAAGTTGGA+AGG | 0.571374 | 1:+61807456 | MsG0180003403.01.T01:CDS |
| CCACCCTCACTAATCATGAA+AGG | 0.571997 | 1:-61808066 | None:intergenic |
| CCTTTCATGATTAGTGAGGG+TGG | 0.572090 | 1:+61808066 | MsG0180003403.01.T01:CDS |
| TCTATGTACAATCAAGGAAG+TGG | 0.573787 | 1:+61807928 | MsG0180003403.01.T01:CDS |
| TTTCCAACATTAGAATCAGA+AGG | 0.574657 | 1:-61808018 | None:intergenic |
| CTGAAGAACATGGATATCAA+AGG | 0.576035 | 1:+61807113 | MsG0180003403.01.T01:CDS |
| GAGAGCATGGATTGAAGCAA+GGG | 0.577276 | 1:+61807660 | MsG0180003403.01.T01:CDS |
| TTCTGATAATTGTACTCCAA+GGG | 0.579460 | 1:+61807840 | MsG0180003403.01.T01:CDS |
| GTTTCAACTCCTGAGACCAC+AGG | 0.581549 | 1:+61805829 | MsG0180003403.01.T01:CDS |
| GAAGAAGCTCATGATCATAA+GGG | 0.582156 | 1:+61807739 | MsG0180003403.01.T01:CDS |
| AGAGAGCATGGATTGAAGCA+AGG | 0.583741 | 1:+61807659 | MsG0180003403.01.T01:CDS |
| TGTGAAGACACTTGAGGACA+AGG | 0.590043 | 1:+61807552 | MsG0180003403.01.T01:CDS |
| GAGATGATGATGTTAGGTCG+TGG | 0.590941 | 1:+61805712 | MsG0180003403.01.T01:CDS |
| GAACATGGATATCAAAGGAG+TGG | 0.592797 | 1:+61807118 | MsG0180003403.01.T01:CDS |
| GAAACAAGAGGCCAAAAGGG+TGG | 0.597918 | 1:+61807609 | MsG0180003403.01.T01:CDS |
| TAAGGCTATGATCATTGTGA+GGG | 0.598377 | 1:-61807351 | None:intergenic |
| CAAAAGAAGGTAAAGCAGGA+AGG | 0.606280 | 1:+61807191 | MsG0180003403.01.T01:CDS |
| AGGATAATGTCTGAAGAACA+TGG | 0.616822 | 1:+61807103 | MsG0180003403.01.T01:intron |
| CTAAGGCTATGATCATTGTG+AGG | 0.617388 | 1:-61807352 | None:intergenic |
| AACACTAGCACTAGCAGTGG+TGG | 0.618195 | 1:-61805809 | None:intergenic |
| TGATGATGGCAATGATGTGA+AGG | 0.618528 | 1:+61807420 | MsG0180003403.01.T01:CDS |
| CGTTAAGAGAAGAAGAGTGG+AGG | 0.619013 | 1:+61807587 | MsG0180003403.01.T01:CDS |
| ATGAGATTGTGAAACTACAA+AGG | 0.619652 | 1:+61807977 | MsG0180003403.01.T01:CDS |
| TAAACATGTACTGTGCATGC+AGG | 0.622094 | 1:+61808590 | MsG0180003403.01.T01:three_prime_UTR |
| GATGACCATGATTGTTATGG+TGG | 0.622653 | 1:-61805504 | None:intergenic |
| ATGTAAACATAATAACTGAA+GGG | 0.622934 | 1:-61808511 | None:intergenic |
| AGCACACTAAAGAAGCATGA+GGG | 0.623517 | 1:-61808560 | None:intergenic |
| ATCTTGAATAGTACTGTGAG+AGG | 0.628009 | 1:+61807817 | MsG0180003403.01.T01:CDS |
| GACAGCTGGTGAATGGAACA+AGG | 0.631622 | 1:+61805557 | MsG0180003403.01.T01:CDS |
| AGAAGAGTGGAGGAAACAAG+AGG | 0.631900 | 1:+61807597 | MsG0180003403.01.T01:CDS |
| TGAGGACAAGGAAAAGGAGA+GGG | 0.634562 | 1:+61807564 | MsG0180003403.01.T01:CDS |
| GAAGCTTGTGGAGAAGCAAG+AGG | 0.641062 | 1:+61807513 | MsG0180003403.01.T01:CDS |
| CAGCACACTAAAGAAGCATG+AGG | 0.646704 | 1:-61808561 | None:intergenic |
| GAGACCACAGGTTATATGGG+TGG | 0.648008 | 1:+61805841 | MsG0180003403.01.T01:CDS |
| ATACACATGCTAATAAACAA+AGG | 0.648070 | 1:-61808662 | None:intergenic |
| TGCACAAATGAAGAAGCTTG+TGG | 0.649032 | 1:+61807501 | MsG0180003403.01.T01:CDS |
| TTGTGGAGAAGCAAGAGGAG+TGG | 0.656273 | 1:+61807518 | MsG0180003403.01.T01:CDS |
| ATCTCCACCCATATAACCTG+TGG | 0.658151 | 1:-61805845 | None:intergenic |
| ACTCACTGTCAATCCAAACA+TGG | 0.659105 | 1:-61808197 | None:intergenic |
| GCACACTAAAGAAGCATGAG+GGG | 0.667380 | 1:-61808559 | None:intergenic |
| TGAAACACTAGCACTAGCAG+TGG | 0.671025 | 1:-61805812 | None:intergenic |
| TTGAGGACAAGGAAAAGGAG+AGG | 0.672502 | 1:+61807563 | MsG0180003403.01.T01:CDS |
| GATGATGGCAATGATGTGAA+GGG | 0.683964 | 1:+61807421 | MsG0180003403.01.T01:CDS |
| TTAGTGAGGGTGGAAATTTG+TGG | 0.685166 | 1:+61808076 | MsG0180003403.01.T01:CDS |
| TAAGCTTGTGAAGACACTTG+AGG | 0.695179 | 1:+61807546 | MsG0180003403.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGATGAAATTTAATAAA+GGG | - | Chr1:61806562-61806581 | None:intergenic | 10.0% |
| !! | AATTAATAATGACATTATTG+TGG | - | Chr1:61806953-61806972 | None:intergenic | 15.0% |
| !! | GTAAAGATGAAATTTAATAA+AGG | - | Chr1:61806563-61806582 | None:intergenic | 15.0% |
| !! | ACATAAATTACATCTACATA+AGG | - | Chr1:61807039-61807058 | None:intergenic | 20.0% |
| !! | ATGTAAACATAATAACTGAA+GGG | - | Chr1:61808514-61808533 | None:intergenic | 20.0% |
| !! | ATTCAAAATCAAAATGAAGA+TGG | + | Chr1:61807787-61807806 | MsG0180003403.01.T01:CDS | 20.0% |
| !! | CTCATATATACATGAAAAAA+TGG | + | Chr1:61805477-61805496 | MsG0180003403.01.T01:exon | 20.0% |
| !! | TTCAAAATCAAAATGAAGAT+GGG | + | Chr1:61807788-61807807 | MsG0180003403.01.T01:CDS | 20.0% |
| !! | TTTAAAGAAGCTAATCAAAA+AGG | + | Chr1:61805940-61805959 | MsG0180003403.01.T01:CDS | 20.0% |
| !!! | ATATTTGTTTGATACCATTT+TGG | + | Chr1:61807078-61807097 | MsG0180003403.01.T01:intron | 20.0% |
| !!! | ATTATTGTTGTTGACAAAAT+TGG | - | Chr1:61807299-61807318 | None:intergenic | 20.0% |
| !!! | GATTAGCTTCTTTAAATTTA+GGG | - | Chr1:61805936-61805955 | None:intergenic | 20.0% |
| !!! | TGATTAGCTTCTTTAAATTT+AGG | - | Chr1:61805937-61805956 | None:intergenic | 20.0% |
| !!! | TTAAAGCTTTTACAAAATCA+CGG | + | Chr1:61808270-61808289 | MsG0180003403.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTTTCATGTATATATGAG+AGG | - | Chr1:61805477-61805496 | None:intergenic | 20.0% |
| ! | AAACACATCAAATACATGTT+TGG | - | Chr1:61808331-61808350 | None:intergenic | 25.0% |
| ! | ACATGTATTTGATGTGTTTA+AGG | + | Chr1:61808332-61808351 | MsG0180003403.01.T01:three_prime_UTR | 25.0% |
| ! | CATGTATTTGATGTGTTTAA+GGG | + | Chr1:61808333-61808352 | MsG0180003403.01.T01:three_prime_UTR | 25.0% |
| ! | GATGTAAACATAATAACTGA+AGG | - | Chr1:61808515-61808534 | None:intergenic | 25.0% |
| ! | GTTAAGCTTAAAATGAGTAT+AGG | + | Chr1:61806355-61806374 | MsG0180003403.01.T01:intron | 25.0% |
| ! | GTTATTATGTTTACATCAGT+TGG | + | Chr1:61808518-61808537 | MsG0180003403.01.T01:three_prime_UTR | 25.0% |
| ! | TAATCAAAAAGGTCCTTTAT+GGG | + | Chr1:61805951-61805970 | MsG0180003403.01.T01:CDS | 25.0% |
| ! | TATTACAAGAAGACAAAAGA+AGG | + | Chr1:61807178-61807197 | MsG0180003403.01.T01:CDS | 25.0% |
| ! | TTACTTTAATGCATGAAGAT+GGG | + | Chr1:61808456-61808475 | MsG0180003403.01.T01:three_prime_UTR | 25.0% |
| ! | TTTACTTTAATGCATGAAGA+TGG | + | Chr1:61808455-61808474 | MsG0180003403.01.T01:three_prime_UTR | 25.0% |
| !! | AAATTTTGCACTTAAAAGAG+GGG | - | Chr1:61806535-61806554 | None:intergenic | 25.0% |
| !! | ACAAATTTTGCACTTAAAAG+AGG | - | Chr1:61806537-61806556 | None:intergenic | 25.0% |
| !! | ATGATTCTAAAGAAGGAAAT+AGG | + | Chr1:61807863-61807882 | MsG0180003403.01.T01:CDS | 25.0% |
| !! | CAAATTTTGCACTTAAAAGA+GGG | - | Chr1:61806536-61806555 | None:intergenic | 25.0% |
| !! | CACAGTTTTTAACAAAATCA+GGG | - | Chr1:61808245-61808264 | None:intergenic | 25.0% |
| !! | TATTACTTGTTTGTTGGAAA+TGG | - | Chr1:61807324-61807343 | None:intergenic | 25.0% |
| !! | TCACAGTTTTTAACAAAATC+AGG | - | Chr1:61808246-61808265 | None:intergenic | 25.0% |
| !! | TGGAAAAAGAACAAAAGTTT+TGG | + | Chr1:61807629-61807648 | MsG0180003403.01.T01:CDS | 25.0% |
| !! | TTAGATCATATTGTTGTTGA+TGG | - | Chr1:61805537-61805556 | None:intergenic | 25.0% |
| !!! | TAGTTATGTTTGCTATAACT+AGG | + | Chr1:61806768-61806787 | MsG0180003403.01.T01:intron | 25.0% |
| !!! | TTGGAGTTAATTTGTTTGAT+GGG | + | Chr1:61806275-61806294 | MsG0180003403.01.T01:intron | 25.0% |
| AAACATGGATTTAGATCGAT+CGG | - | Chr1:61808185-61808204 | None:intergenic | 30.0% | |
| AAACTACAAAGGAATGATCA+TGG | + | Chr1:61807988-61808007 | MsG0180003403.01.T01:CDS | 30.0% | |
| AATGTTGGAAATGTTGCTAA+TGG | + | Chr1:61808030-61808049 | MsG0180003403.01.T01:CDS | 30.0% | |
| AGACATTATCCTAACCAAAA+TGG | - | Chr1:61807095-61807114 | None:intergenic | 30.0% | |
| ATGAGATTGTGAAACTACAA+AGG | + | Chr1:61807977-61807996 | MsG0180003403.01.T01:CDS | 30.0% | |
| CATAAACTCTCATCAGTTAA+TGG | - | Chr1:61808140-61808159 | None:intergenic | 30.0% | |
| CTAATCAAAAAGGTCCTTTA+TGG | + | Chr1:61805950-61805969 | MsG0180003403.01.T01:CDS | 30.0% | |
| TAGCAAACATAACTAAGCAT+AGG | - | Chr1:61806763-61806782 | None:intergenic | 30.0% | |
| TCACATGATTAGACTTCTTT+AGG | + | Chr1:61806862-61806881 | MsG0180003403.01.T01:intron | 30.0% | |
| TTCTGATAATTGTACTCCAA+GGG | + | Chr1:61807840-61807859 | MsG0180003403.01.T01:CDS | 30.0% | |
| TTGGAATATGACAAAAGATC+AGG | + | Chr1:61808424-61808443 | MsG0180003403.01.T01:three_prime_UTR | 30.0% | |
| TTTCCAACATTAGAATCAGA+AGG | - | Chr1:61808021-61808040 | None:intergenic | 30.0% | |
| TTTCCTTTCATGATTAGTGA+GGG | + | Chr1:61808063-61808082 | MsG0180003403.01.T01:CDS | 30.0% | |
| TTTGGCTATTACTTGTTTGT+TGG | - | Chr1:61807330-61807349 | None:intergenic | 30.0% | |
| ! | AAGGGTGTAAATGTAATAAC+TGG | + | Chr1:61807757-61807776 | MsG0180003403.01.T01:CDS | 30.0% |
| ! | AATCTGTTCAAGTTTAGTGA+TGG | + | Chr1:61808373-61808392 | MsG0180003403.01.T01:three_prime_UTR | 30.0% |
| ! | AGTTTTTAACAAAATCAGGG+TGG | - | Chr1:61808242-61808261 | None:intergenic | 30.0% |
| ! | CAAATACATGTTTGGAATCA+TGG | - | Chr1:61808323-61808342 | None:intergenic | 30.0% |
| ! | GTTGTTGTTATTGTTGTTGA+AGG | - | Chr1:61805787-61805806 | None:intergenic | 30.0% |
| ! | TTGTTGACAAAATTGGTTTC+TGG | - | Chr1:61807292-61807311 | None:intergenic | 30.0% |
| !! | ATGGAAGCTTTGAAGAATTT+AGG | + | Chr1:61807694-61807713 | MsG0180003403.01.T01:CDS | 30.0% |
| !! | CTTGGAGTTAATTTGTTTGA+TGG | + | Chr1:61806274-61806293 | MsG0180003403.01.T01:intron | 30.0% |
| !! | TAATTTGTTTGATGGGGATT+CGG | + | Chr1:61806282-61806301 | MsG0180003403.01.T01:intron | 30.0% |
| !! | TGGAGTTAATTTGTTTGATG+GGG | + | Chr1:61806276-61806295 | MsG0180003403.01.T01:intron | 30.0% |
| !!! | TGTTTGATACCATTTTGGTT+AGG | + | Chr1:61807083-61807102 | MsG0180003403.01.T01:intron | 30.0% |
| AAGACAAAAGAAGGTAAAGC+AGG | + | Chr1:61807187-61807206 | MsG0180003403.01.T01:CDS | 35.0% | |
| AGAAGGAAATAGGAAGAGAA+AGG | + | Chr1:61807873-61807892 | MsG0180003403.01.T01:CDS | 35.0% | |
| AGAGTAAGAGTTTCTTGTCT+TGG | - | Chr1:61805889-61805908 | None:intergenic | 35.0% | |
| AGGAGGTAGAGAAATGATTA+AGG | + | Chr1:61807714-61807733 | MsG0180003403.01.T01:CDS | 35.0% | |
| AGGATAATGTCTGAAGAACA+TGG | + | Chr1:61807103-61807122 | MsG0180003403.01.T01:intron | 35.0% | |
| ATCTTGAATAGTACTGTGAG+AGG | + | Chr1:61807817-61807836 | MsG0180003403.01.T01:CDS | 35.0% | |
| CAATGCTCTATGTACAATCA+AGG | + | Chr1:61807922-61807941 | MsG0180003403.01.T01:CDS | 35.0% | |
| CATGTATATATGAGAGGCTA+GGG | - | Chr1:61805471-61805490 | None:intergenic | 35.0% | |
| CTGAAGAACATGGATATCAA+AGG | + | Chr1:61807113-61807132 | MsG0180003403.01.T01:CDS | 35.0% | |
| CTTTCCTTTCATGATTAGTG+AGG | + | Chr1:61808062-61808081 | MsG0180003403.01.T01:CDS | 35.0% | |
| GAAGAAGCTCATGATCATAA+GGG | + | Chr1:61807739-61807758 | MsG0180003403.01.T01:CDS | 35.0% | |
| GATCGATCTAAATCCATGTT+TGG | + | Chr1:61808184-61808203 | MsG0180003403.01.T01:three_prime_UTR | 35.0% | |
| GGAAAAGTTCACTTGCTTAT+TGG | + | Chr1:61808405-61808424 | MsG0180003403.01.T01:three_prime_UTR | 35.0% | |
| GTTCTGATAATTGTACTCCA+AGG | + | Chr1:61807839-61807858 | MsG0180003403.01.T01:CDS | 35.0% | |
| TAAGGCTATGATCATTGTGA+GGG | - | Chr1:61807354-61807373 | None:intergenic | 35.0% | |
| TATGAAATGACATCAAGCTG+AGG | + | Chr1:61806679-61806698 | MsG0180003403.01.T01:intron | 35.0% | |
| TCACCTTCTGATTCTAATGT+TGG | + | Chr1:61808015-61808034 | MsG0180003403.01.T01:CDS | 35.0% | |
| TCATGTATATATGAGAGGCT+AGG | - | Chr1:61805472-61805491 | None:intergenic | 35.0% | |
| TCTATGTACAATCAAGGAAG+TGG | + | Chr1:61807928-61807947 | MsG0180003403.01.T01:CDS | 35.0% | |
| TGAAGAAGCTCATGATCATA+AGG | + | Chr1:61807738-61807757 | MsG0180003403.01.T01:CDS | 35.0% | |
| TGAGTATGAAGAAGCTATGT+GGG | - | Chr1:61806052-61806071 | None:intergenic | 35.0% | |
| TGGTGGAATCTTACTAAACT+TGG | - | Chr1:61806481-61806500 | None:intergenic | 35.0% | |
| TTAACAAAGCTGTCAGATTC+CGG | - | Chr1:61805639-61805658 | None:intergenic | 35.0% | |
| TTGAGTATGAAGAAGCTATG+TGG | - | Chr1:61806053-61806072 | None:intergenic | 35.0% | |
| TTGAGTTAGTAGTGAGACTA+AGG | - | Chr1:61807372-61807391 | None:intergenic | 35.0% | |
| TTGTAAGCAAATGCAGACAT+TGG | - | Chr1:61806654-61806673 | None:intergenic | 35.0% | |
| ! | AATTTGTTTGATGGGGATTC+GGG | + | Chr1:61806283-61806302 | MsG0180003403.01.T01:intron | 35.0% |
| ! | ACAATATGATCTAAGACAGC+TGG | + | Chr1:61805543-61805562 | MsG0180003403.01.T01:CDS | 35.0% |
| ! | CAGTATGAGATGATGATGTT+AGG | + | Chr1:61805706-61805725 | MsG0180003403.01.T01:CDS | 35.0% |
| ! | CGTCAACTTGAAGCTTTATA+TGG | + | Chr1:61807241-61807260 | MsG0180003403.01.T01:CDS | 35.0% |
| ! | CTCTCATCAGTTAATGGTTT+TGG | - | Chr1:61808134-61808153 | None:intergenic | 35.0% |
| ! | GGAAATTTGTGGGAGAATTT+TGG | + | Chr1:61808087-61808106 | MsG0180003403.01.T01:CDS | 35.0% |
| ! | GTTGTTATTGTTGTTGAAGG+TGG | - | Chr1:61805784-61805803 | None:intergenic | 35.0% |
| ! | GTTTAGTGATGGAGATAAAG+TGG | + | Chr1:61808384-61808403 | MsG0180003403.01.T01:three_prime_UTR | 35.0% |
| ! | GTTTCTGTGTACTGATCATA+TGG | + | Chr1:61808619-61808638 | MsG0180003403.01.T01:three_prime_UTR | 35.0% |
| ! | TATGATCATTGTGAGGGTTT+TGG | - | Chr1:61807348-61807367 | None:intergenic | 35.0% |
| ! | TCTCATACTGTTGTTGTTGT+TGG | - | Chr1:61805696-61805715 | None:intergenic | 35.0% |
| ! | TTGTTCTTTTTCCACCCTTT+TGG | - | Chr1:61807623-61807642 | None:intergenic | 35.0% |
| ! | TTTTGATGTGTCTGTGGATT+AGG | - | Chr1:61805673-61805692 | None:intergenic | 35.0% |
| !! | CACACATTTCTAGCTAACTA+GGG | + | Chr1:61806901-61806920 | MsG0180003403.01.T01:intron | 35.0% |
| !! | CATATTGTTGTTGATGGTGA+TGG | - | Chr1:61805531-61805550 | None:intergenic | 35.0% |
| !! | GAAGCTTTGAAGAATTTAGG+AGG | + | Chr1:61807697-61807716 | MsG0180003403.01.T01:CDS | 35.0% |
| !! | TCACACATTTCTAGCTAACT+AGG | + | Chr1:61806900-61806919 | MsG0180003403.01.T01:intron | 35.0% |
| AAAGTGGAAAAACGAGACAG+TGG | - | Chr1:61806501-61806520 | None:intergenic | 40.0% | |
| AAGGGAAAGAAGAAGAGTAG+TGG | + | Chr1:61807439-61807458 | MsG0180003403.01.T01:CDS | 40.0% | |
| ACAACAAAAACGTCAGTGCA+TGG | + | Chr1:61806799-61806818 | MsG0180003403.01.T01:intron | 40.0% | |
| ACTCACTGTCAATCCAAACA+TGG | - | Chr1:61808200-61808219 | None:intergenic | 40.0% | |
| AGCAAATGCAGACATTGGAA+TGG | - | Chr1:61806649-61806668 | None:intergenic | 40.0% | |
| CAAAAGAAGGTAAAGCAGGA+AGG | + | Chr1:61807191-61807210 | MsG0180003403.01.T01:CDS | 40.0% | |
| CGTCGGTATAGATGGAAAAT+GGG | - | Chr1:61805587-61805606 | None:intergenic | 40.0% | |
| CTAAGGCTATGATCATTGTG+AGG | - | Chr1:61807355-61807374 | None:intergenic | 40.0% | |
| CTAGAGACTTCATCCCATAA+AGG | - | Chr1:61805967-61805986 | None:intergenic | 40.0% | |
| CTTTATGGGATGAAGTCTCT+AGG | + | Chr1:61805965-61805984 | MsG0180003403.01.T01:CDS | 40.0% | |
| GAACATGGATATCAAAGGAG+TGG | + | Chr1:61807118-61807137 | MsG0180003403.01.T01:CDS | 40.0% | |
| GATGACCACCATAACAATCA+TGG | + | Chr1:61805499-61805518 | MsG0180003403.01.T01:CDS | 40.0% | |
| GATGACCATGATTGTTATGG+TGG | - | Chr1:61805507-61805526 | None:intergenic | 40.0% | |
| GGTGATGACCATGATTGTTA+TGG | - | Chr1:61805510-61805529 | None:intergenic | 40.0% | |
| GTTTGGATTGACAGTGAGTT+CGG | + | Chr1:61808201-61808220 | MsG0180003403.01.T01:three_prime_UTR | 40.0% | |
| TAAACATGTACTGTGCATGC+AGG | + | Chr1:61808590-61808609 | MsG0180003403.01.T01:three_prime_UTR | 40.0% | |
| TAAGCTTGTGAAGACACTTG+AGG | + | Chr1:61807546-61807565 | MsG0180003403.01.T01:CDS | 40.0% | |
| TAGTGAGGGTGGAAATTTGT+GGG | + | Chr1:61808077-61808096 | MsG0180003403.01.T01:CDS | 40.0% | |
| TAGTGGAAGAAGAAGTTGGA+AGG | + | Chr1:61807456-61807475 | MsG0180003403.01.T01:CDS | 40.0% | |
| TGAAATGACATGACTGCACT+TGG | + | Chr1:61806256-61806275 | MsG0180003403.01.T01:intron | 40.0% | |
| TGCACAAATGAAGAAGCTTG+TGG | + | Chr1:61807501-61807520 | MsG0180003403.01.T01:CDS | 40.0% | |
| TTAGTGAGGGTGGAAATTTG+TGG | + | Chr1:61808076-61808095 | MsG0180003403.01.T01:CDS | 40.0% | |
| ! | AGAGTAGTGGAAGAAGAAGT+TGG | + | Chr1:61807452-61807471 | MsG0180003403.01.T01:CDS | 40.0% |
| ! | AGCACACTAAAGAAGCATGA+GGG | - | Chr1:61808563-61808582 | None:intergenic | 40.0% |
| ! | AGGGGTACAAAGTTTCAAAG+TGG | - | Chr1:61806517-61806536 | None:intergenic | 40.0% |
| ! | CCAAGGGATGATTCTAAAGA+AGG | + | Chr1:61807856-61807875 | MsG0180003403.01.T01:CDS | 40.0% |
| ! | CCATTTTCCATCTATACCGA+CGG | + | Chr1:61805585-61805604 | MsG0180003403.01.T01:CDS | 40.0% |
| ! | GATGATGGCAATGATGTGAA+GGG | + | Chr1:61807421-61807440 | MsG0180003403.01.T01:CDS | 40.0% |
| ! | GTTATTGTTGTTGAAGGTGG+TGG | - | Chr1:61805781-61805800 | None:intergenic | 40.0% |
| ! | TGCTTCTTTAGTGTGCTGTT+TGG | + | Chr1:61808566-61808585 | MsG0180003403.01.T01:three_prime_UTR | 40.0% |
| ! | TTTGGAGTAATGAGAGAGCA+TGG | + | Chr1:61807647-61807666 | MsG0180003403.01.T01:CDS | 40.0% |
| !! | CCTTCTTTAGAATCATCCCT+TGG | - | Chr1:61807859-61807878 | None:intergenic | 40.0% |
| !! | GCTTCTTTAGTGTGCTGTTT+GGG | + | Chr1:61808567-61808586 | MsG0180003403.01.T01:three_prime_UTR | 40.0% |
| !! | TGATGATGGCAATGATGTGA+AGG | + | Chr1:61807420-61807439 | MsG0180003403.01.T01:CDS | 40.0% |
| !! | TGGTTTCTGGTAGAGAAGTT+TGG | - | Chr1:61807279-61807298 | None:intergenic | 40.0% |
| !!! | TGTTGGTTTTGATGTGTCTG+TGG | - | Chr1:61805679-61805698 | None:intergenic | 40.0% |
| AGAAGAGTGGAGGAAACAAG+AGG | + | Chr1:61807597-61807616 | MsG0180003403.01.T01:CDS | 45.0% | |
| ATCTCCACCCATATAACCTG+TGG | - | Chr1:61805848-61805867 | None:intergenic | 45.0% | |
| CCACCCTCACTAATCATGAA+AGG | - | Chr1:61808069-61808088 | None:intergenic | 45.0% | |
| CCGTCGGTATAGATGGAAAA+TGG | - | Chr1:61805588-61805607 | None:intergenic | 45.0% | |
| CCTGAGACCACAGGTTATAT+GGG | + | Chr1:61805838-61805857 | MsG0180003403.01.T01:CDS | 45.0% | |
| CCTTTCATGATTAGTGAGGG+TGG | + | Chr1:61808066-61808085 | MsG0180003403.01.T01:CDS | 45.0% | |
| CGTTAAGAGAAGAAGAGTGG+AGG | + | Chr1:61807587-61807606 | MsG0180003403.01.T01:CDS | 45.0% | |
| GACACTTGAGGACAAGGAAA+AGG | + | Chr1:61807558-61807577 | MsG0180003403.01.T01:CDS | 45.0% | |
| GAGGAAACAAGAGGCCAAAA+GGG | + | Chr1:61807606-61807625 | MsG0180003403.01.T01:CDS | 45.0% | |
| GGCATGATGGTAAGCATTAC+AGG | + | Chr1:61807212-61807231 | MsG0180003403.01.T01:CDS | 45.0% | |
| TCCTGAGACCACAGGTTATA+TGG | + | Chr1:61805837-61805856 | MsG0180003403.01.T01:CDS | 45.0% | |
| TGAAACACTAGCACTAGCAG+TGG | - | Chr1:61805815-61805834 | None:intergenic | 45.0% | |
| TGAGGACAAGGAAAAGGAGA+GGG | + | Chr1:61807564-61807583 | MsG0180003403.01.T01:CDS | 45.0% | |
| TGTGAAGACACTTGAGGACA+AGG | + | Chr1:61807552-61807571 | MsG0180003403.01.T01:CDS | 45.0% | |
| TTGAGGACAAGGAAAAGGAG+AGG | + | Chr1:61807563-61807582 | MsG0180003403.01.T01:CDS | 45.0% | |
| ! | AGAGAGCATGGATTGAAGCA+AGG | + | Chr1:61807659-61807678 | MsG0180003403.01.T01:CDS | 45.0% |
| ! | ATGAGTTTTTCTCCGGTCAC+CGG | + | Chr1:61805617-61805636 | MsG0180003403.01.T01:CDS | 45.0% |
| ! | ATTGTTGTTGAAGGTGGTGG+TGG | - | Chr1:61805778-61805797 | None:intergenic | 45.0% |
| ! | CAGCACACTAAAGAAGCATG+AGG | - | Chr1:61808564-61808583 | None:intergenic | 45.0% |
| ! | CTAAAGAAGCATGAGGGGAA+AGG | - | Chr1:61808557-61808576 | None:intergenic | 45.0% |
| ! | GAGAGCATGGATTGAAGCAA+GGG | + | Chr1:61807660-61807679 | MsG0180003403.01.T01:CDS | 45.0% |
| ! | GAGATGATGATGTTAGGTCG+TGG | + | Chr1:61805712-61805731 | MsG0180003403.01.T01:CDS | 45.0% |
| ! | GATCTAAGACAGCTGGTGAA+TGG | + | Chr1:61805550-61805569 | MsG0180003403.01.T01:CDS | 45.0% |
| ! | GCACACTAAAGAAGCATGAG+GGG | - | Chr1:61808562-61808581 | None:intergenic | 45.0% |
| ! | GCTACGGATGAGTTTTTCTC+CGG | + | Chr1:61805610-61805629 | MsG0180003403.01.T01:CDS | 45.0% |
| ! | GTACTGTGCATGCAGGTTTT+TGG | + | Chr1:61808597-61808616 | MsG0180003403.01.T01:three_prime_UTR | 45.0% |
| ! | TTTTCCATCTATACCGACGG+CGG | + | Chr1:61805588-61805607 | MsG0180003403.01.T01:CDS | 45.0% |
| !! | AGCAAGGGATGCTGCTTTAA+TGG | + | Chr1:61807675-61807694 | MsG0180003403.01.T01:CDS | 45.0% |
| !! | AAATAATTACATAAATAATT+AGG | - | Chr1:61806026-61806045 | None:intergenic | 5.0% |
| AACACTAGCACTAGCAGTGG+TGG | - | Chr1:61805812-61805831 | None:intergenic | 50.0% | |
| CCCATATAACCTGTGGTCTC+AGG | - | Chr1:61805841-61805860 | None:intergenic | 50.0% | |
| GAAACAAGAGGCCAAAAGGG+TGG | + | Chr1:61807609-61807628 | MsG0180003403.01.T01:CDS | 50.0% | |
| GAAGCTTGTGGAGAAGCAAG+AGG | + | Chr1:61807513-61807532 | MsG0180003403.01.T01:CDS | 50.0% | |
| GACAGCTGGTGAATGGAACA+AGG | + | Chr1:61805557-61805576 | MsG0180003403.01.T01:CDS | 50.0% | |
| GAGACCACAGGTTATATGGG+TGG | + | Chr1:61805841-61805860 | MsG0180003403.01.T01:CDS | 50.0% | |
| GAGATGCATCCACTGGAAGA+TGG | + | Chr1:61805863-61805882 | MsG0180003403.01.T01:CDS | 50.0% | |
| GATACGTCGTCGTCTGATGA+TGG | + | Chr1:61807406-61807425 | MsG0180003403.01.T01:CDS | 50.0% | |
| GGAGGAAACAAGAGGCCAAA+AGG | + | Chr1:61807605-61807624 | MsG0180003403.01.T01:CDS | 50.0% | |
| GGGCGTTAAGAGAAGAAGAG+TGG | + | Chr1:61807584-61807603 | MsG0180003403.01.T01:CDS | 50.0% | |
| GTGGAAAAACGAGACAGTGG+TGG | - | Chr1:61806498-61806517 | None:intergenic | 50.0% | |
| GTTTCAACTCCTGAGACCAC+AGG | + | Chr1:61805829-61805848 | MsG0180003403.01.T01:CDS | 50.0% | |
| TTGTCTTGGCCATCTTCCAG+TGG | - | Chr1:61805875-61805894 | None:intergenic | 50.0% | |
| TTGTGGAGAAGCAAGAGGAG+TGG | + | Chr1:61807518-61807537 | MsG0180003403.01.T01:CDS | 50.0% | |
| ! | GGTAAAGCAGGAAGGCATGA+TGG | + | Chr1:61807199-61807218 | MsG0180003403.01.T01:CDS | 50.0% |
| AGCTGTCAGATTCCGGTGAC+CGG | - | Chr1:61805632-61805651 | None:intergenic | 55.0% | |
| ATCTATACCGACGGCGGCTA+CGG | + | Chr1:61805594-61805613 | MsG0180003403.01.T01:CDS | 55.0% | |
| ATGGGTGGAGATGCATCCAC+TGG | + | Chr1:61805856-61805875 | MsG0180003403.01.T01:CDS | 55.0% | |
| AACTCATCCGTAGCCGCCGT+CGG | - | Chr1:61805604-61805623 | None:intergenic | 60.0% | |
| GTAGCCGCCGTCGGTATAGA+TGG | - | Chr1:61805595-61805614 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 61805446 | 61808669 | 61805446 | ID=MsG0180003403.01;Name=MsG0180003403.01 |
| Chr1 | mRNA | 61805446 | 61808669 | 61805446 | ID=MsG0180003403.01.T01;Parent=MsG0180003403.01;Name=MsG0180003403.01.T01;_AED=0.34;_eAED=0.34;_QI=50|1|1|1|1|1|2|526|509 |
| Chr1 | exon | 61805446 | 61805986 | 61805446 | ID=MsG0180003403.01.T01:exon:4368;Parent=MsG0180003403.01.T01 |
| Chr1 | exon | 61807105 | 61808669 | 61807105 | ID=MsG0180003403.01.T01:exon:4369;Parent=MsG0180003403.01.T01 |
| Chr1 | five_prime_UTR | 61805446 | 61805495 | 61805446 | ID=MsG0180003403.01.T01:five_prime_utr;Parent=MsG0180003403.01.T01 |
| Chr1 | CDS | 61805496 | 61805986 | 61805496 | ID=MsG0180003403.01.T01:cds;Parent=MsG0180003403.01.T01 |
| Chr1 | CDS | 61807105 | 61808143 | 61807105 | ID=MsG0180003403.01.T01:cds;Parent=MsG0180003403.01.T01 |
| Chr1 | three_prime_UTR | 61808144 | 61808669 | 61808144 | ID=MsG0180003403.01.T01:three_prime_utr;Parent=MsG0180003403.01.T01 |
| Gene Sequence |
| Protein sequence |
