AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031621.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031621.01.T01 MTR_6g027580 98.805 586 7 0 1 586 1 586 0.0 1161
MsG0680031621.01.T01 MTR_7g086690 49.436 532 250 7 67 586 59 583 3.78e-151 447
MsG0680031621.01.T01 MTR_8g021180 45.126 554 260 5 69 583 98 646 1.84e-149 445
MsG0680031621.01.T01 MTR_6g027570 48.270 578 278 8 16 586 9 572 3.10e-147 437
MsG0680031621.01.T01 MTR_7g113730 30.972 494 302 10 95 582 55 515 2.17e-50 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031621.01.T01 AT5G17860 53.448 522 234 4 67 586 53 567 0.0 546
MsG0680031621.01.T01 AT5G17860 51.341 522 210 5 67 586 53 532 1.31e-174 505
MsG0680031621.01.T01 AT1G54115 41.680 619 293 9 26 583 27 638 1.03e-154 459
MsG0680031621.01.T01 AT3G14070 44.203 552 265 6 69 583 92 637 1.02e-153 456
MsG0680031621.01.T01 AT5G17850 48.177 521 254 6 69 583 46 556 3.27e-138 413
MsG0680031621.01.T01 AT5G17850 48.177 521 254 6 69 583 46 556 3.27e-138 413
MsG0680031621.01.T01 AT1G08960 32.115 520 303 10 77 581 58 542 3.60e-64 220

Find 80 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTTGTTTCTTGTTTATA+AGG 0.167874 6:-23416366 MsG0680031621.01.T01:CDS
AGTTGGTTTAAATAGCATTT+TGG 0.186213 6:-23417526 MsG0680031621.01.T01:CDS
TTAGGAACAACGTAAGAATT+AGG 0.188321 6:+23416511 None:intergenic
TCCTAAGGATAGTTCACTTT+TGG 0.246796 6:-23416494 MsG0680031621.01.T01:CDS
TCATTGATTGGAATTGTCTT+TGG 0.261248 6:-23416886 MsG0680031621.01.T01:CDS
ATTTCAATTGGATATGTAAT+TGG 0.264822 6:-23416733 MsG0680031621.01.T01:CDS
GAATCTGGCATACCATTATT+AGG 0.266587 6:-23417216 MsG0680031621.01.T01:CDS
CTTGGAAATTCACCAATTCT+TGG 0.270067 6:-23417756 MsG0680031621.01.T01:CDS
GGTGCACAAATTGCTGTTTC+AGG 0.282821 6:-23416610 MsG0680031621.01.T01:CDS
CAAGAAGATGTTTGTTTCCT+TGG 0.294111 6:-23416825 MsG0680031621.01.T01:CDS
ACCTCTTGTTCTTTCAGCAT+GGG 0.313872 6:-23416542 MsG0680031621.01.T01:CDS
CATCTACGAAGTTGACAAAA+AGG 0.319201 6:-23417274 MsG0680031621.01.T01:CDS
TAGAAACTTCCACAAGTAAT+AGG 0.324007 6:+23417095 None:intergenic
AGGATTGATATAAAGTTTGA+TGG 0.349971 6:+23417980 None:intergenic
TATTTAACATCATCATTGAT+TGG 0.352924 6:-23416898 MsG0680031621.01.T01:CDS
TTTATCAACTGAAACTTCAT+TGG 0.356036 6:+23417446 None:intergenic
GAGTTGGAAGTGAAAGTATA+AGG 0.357006 6:+23418068 None:intergenic
TGTGATGATTTAGTTGAATC+TGG 0.360613 6:-23417231 MsG0680031621.01.T01:CDS
CAAGGAAACAAACATCTTCT+TGG 0.367485 6:+23416826 None:intergenic
ACAGAGTATTGAAGTAAAAG+AGG 0.368663 6:-23417139 MsG0680031621.01.T01:CDS
TATGCAACTAAGCTACTCTT+TGG 0.370812 6:+23416919 None:intergenic
AAACAAGAAACAAAGGTAAA+TGG 0.374670 6:+23416372 None:intergenic
TACCTCTTGTTCTTTCAGCA+TGG 0.389379 6:-23416543 MsG0680031621.01.T01:CDS
CAAAGAATTGCGAATAAAAT+CGG 0.396842 6:+23416967 None:intergenic
ACTTCAATACTCTGTAAAAT+CGG 0.399296 6:+23417147 None:intergenic
AAATGAGAATTAGAATTTGA+AGG 0.413721 6:+23417960 None:intergenic
TCGTCGGCATAACCTAATAA+TGG 0.416187 6:+23417204 None:intergenic
TAGGAACAACGTAAGAATTA+GGG 0.421067 6:+23416512 None:intergenic
CTCCTTATCATCATTTCCAT+TGG 0.424094 6:-23417375 MsG0680031621.01.T01:CDS
CTAGGTGATTTGATAGCAAA+TGG 0.424425 6:-23416661 MsG0680031621.01.T01:CDS
TGTTTGTTTCCTTGGCTAGC+TGG 0.426986 6:-23416817 MsG0680031621.01.T01:CDS
TTTGTTTCTACAGCTGTCTT+AGG 0.432757 6:-23417492 MsG0680031621.01.T01:CDS
GGAGAATGAACAAAGAGAAA+AGG 0.434641 6:+23417394 None:intergenic
CGGTTGTGAATGAAGAAAAC+TGG 0.441944 6:-23417026 MsG0680031621.01.T01:CDS
TAATTCTTACGTTGTTCCTA+AGG 0.451255 6:-23416509 MsG0680031621.01.T01:CDS
CATTCTGATTGTAGATCAAA+AGG 0.451621 6:-23417813 MsG0680031621.01.T01:CDS
ATAAGGTTAGCCATGGCAAT+TGG 0.456604 6:-23416349 MsG0680031621.01.T01:CDS
AGACTTTCTCCAACCATAGC+TGG 0.456635 6:-23417630 MsG0680031621.01.T01:CDS
GCTGTTTCAGGTTGTTATGC+TGG 0.461252 6:-23416598 MsG0680031621.01.T01:CDS
TCTTTATGTTTGTGCCGTCT+CGG 0.461328 6:-23417307 MsG0680031621.01.T01:CDS
TTCCAATGGAAATGATGATA+AGG 0.463870 6:+23417373 None:intergenic
CATAAAGAAAATAGATAGAA+AGG 0.470467 6:+23417322 None:intergenic
TTGGCTTGGGGAAATTCTCT+AGG 0.480332 6:-23416679 MsG0680031621.01.T01:CDS
AATTCTTTGCAATACACAAA+TGG 0.485520 6:-23416953 MsG0680031621.01.T01:CDS
CAAGAATTGGTGAATTTCCA+AGG 0.494536 6:+23417757 None:intergenic
ACAACACTAGCAAAGAAATC+AGG 0.497139 6:+23417576 None:intergenic
ACGGTTAACCCTAAAATTGA+AGG 0.498077 6:+23416703 None:intergenic
CCTCTTGTTCTTTCAGCATG+GGG 0.507419 6:-23416541 MsG0680031621.01.T01:CDS
ACCAAGAAAACTCACTATAC+CGG 0.516679 6:-23417046 MsG0680031621.01.T01:CDS
TGCGAATAAAATCGGTGCTA+AGG 0.517302 6:+23416975 None:intergenic
ACATTACTCTCTCTAGGTAA+TGG 0.517323 6:-23417603 MsG0680031621.01.T01:CDS
AGTAGTGTGTGACCAAGAAT+TGG 0.519119 6:+23417744 None:intergenic
CCCAAAAGTGAACTATCCTT+AGG 0.527760 6:+23416493 None:intergenic
CTTGTTTATAAGGTTAGCCA+TGG 0.529470 6:-23416356 MsG0680031621.01.T01:CDS
TGAAGAGGAAGGATGTGTTG+AGG 0.534769 6:+23418015 None:intergenic
AGAATTTCCCCAAGCCAAAA+CGG 0.537248 6:+23416684 None:intergenic
CTCTTGTTCTTTCAGCATGG+GGG 0.543298 6:-23416540 MsG0680031621.01.T01:CDS
GGAAACAAACATCTTCTTGG+TGG 0.548039 6:+23416829 None:intergenic
TCTTGTTCTTTCAGCATGGG+GGG 0.549335 6:-23416539 MsG0680031621.01.T01:CDS
TTGTTTCCTTGGCTAGCTGG+TGG 0.552371 6:-23416814 MsG0680031621.01.T01:CDS
TGGAATTGTCTTTGGAAACA+TGG 0.555855 6:-23416878 MsG0680031621.01.T01:CDS
GAGTAATGTTACACCAGCTA+TGG 0.556234 6:+23417617 None:intergenic
AGTTCAAACAATGGCGCAGT+TGG 0.556253 6:-23417543 MsG0680031621.01.T01:CDS
CAATACACAAATGGAAAATG+TGG 0.556780 6:-23416944 MsG0680031621.01.T01:CDS
GTAACTGATATAACTGCGTA+TGG 0.573205 6:+23416997 None:intergenic
CCCCATGCTGAAAGAACAAG+AGG 0.576639 6:+23416541 None:intergenic
GGTGTAACATTACTCTCTCT+AGG 0.578728 6:-23417609 MsG0680031621.01.T01:CDS
AAAGTAATTTGAAGCCGTGT+CGG 0.579217 6:+23417686 None:intergenic
ATCATTATCAGTATCATCGT+CGG 0.584965 6:+23417188 None:intergenic
ATTAAGAGCACCAATTGCCA+TGG 0.587028 6:+23416339 None:intergenic
GATGAAATGTGTGGCCGAGA+CGG 0.594481 6:+23417293 None:intergenic
TTTGATAGCAAATGGTGCTA+TGG 0.595159 6:-23416653 MsG0680031621.01.T01:CDS
AATGTTACACCAGCTATGGT+TGG 0.602466 6:+23417621 None:intergenic
TCTTTCACAAGTTCAAACAA+TGG 0.607460 6:-23417552 MsG0680031621.01.T01:CDS
CACTAGTGAGAATTCTAGCA+TGG 0.614238 6:+23417910 None:intergenic
GAAAATCCACCAGCTAGCCA+AGG 0.618132 6:+23416808 None:intergenic
CCCATCAAAATATTGAACAT+AGG 0.620623 6:+23416574 None:intergenic
ACCTTATAAACAAGAAACAA+AGG 0.640232 6:+23416365 None:intergenic
ATGGACTTATATAATAGCTG+AGG 0.679474 6:-23416773 MsG0680031621.01.T01:CDS
AACTTCGTAGATGAAATGTG+TGG 0.768427 6:+23417284 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTTGATGGAAAAAAAT+AGG + Chr6:23416422-23416441 None:intergenic 20.0%
!! AAATGAGAATTAGAATTTGA+AGG + Chr6:23416453-23416472 None:intergenic 20.0%
!! ATTTCAATTGGATATGTAAT+TGG - Chr6:23417677-23417696 MsG0680031621.01.T01:CDS 20.0%
!! CATAAAGAAAATAGATAGAA+AGG + Chr6:23417091-23417110 None:intergenic 20.0%
!! TATTTAACATCATCATTGAT+TGG - Chr6:23417512-23417531 MsG0680031621.01.T01:CDS 20.0%
!!! TTTTAGTTAAGAAGAATATG+AGG - Chr6:23417984-23418003 MsG0680031621.01.T01:CDS 20.0%
! AAAAAGACTAATCTTTCCAA+TGG + Chr6:23417054-23417073 None:intergenic 25.0%
! AAACAAGAAACAAAGGTAAA+TGG + Chr6:23418041-23418060 None:intergenic 25.0%
! AATTCTTTGCAATACACAAA+TGG - Chr6:23417457-23417476 MsG0680031621.01.T01:CDS 25.0%
! ACCTTATAAACAAGAAACAA+AGG + Chr6:23418048-23418067 None:intergenic 25.0%
! ACTTCAATACTCTGTAAAAT+CGG + Chr6:23417266-23417285 None:intergenic 25.0%
! AGGATTGATATAAAGTTTGA+TGG + Chr6:23416433-23416452 None:intergenic 25.0%
! CAAAGAATTGCGAATAAAAT+CGG + Chr6:23417446-23417465 None:intergenic 25.0%
! TTTATCAACTGAAACTTCAT+TGG + Chr6:23416967-23416986 None:intergenic 25.0%
!! ACCTTTGTTTCTTGTTTATA+AGG - Chr6:23418044-23418063 MsG0680031621.01.T01:CDS 25.0%
!! CAAATCTTTTATTGTAACCT+TGG - Chr6:23416636-23416655 MsG0680031621.01.T01:CDS 25.0%
!! TTGGTTTAAATAGCATTTTG+GGG - Chr6:23416886-23416905 MsG0680031621.01.T01:CDS 25.0%
!!! AATATTGTTTTTGATGGTAG+GGG - Chr6:23417943-23417962 MsG0680031621.01.T01:CDS 25.0%
!!! ACAATATTGTTTTTGATGGT+AGG - Chr6:23417941-23417960 MsG0680031621.01.T01:CDS 25.0%
!!! AGTTGGTTTAAATAGCATTT+TGG - Chr6:23416884-23416903 MsG0680031621.01.T01:CDS 25.0%
!!! ATTGGAAAGATTAGTCTTTT+TGG - Chr6:23417053-23417072 MsG0680031621.01.T01:CDS 25.0%
!!! CAATATTGTTTTTGATGGTA+GGG - Chr6:23417942-23417961 MsG0680031621.01.T01:CDS 25.0%
!!! CCTATGTTCAATATTTTGAT+GGG - Chr6:23417836-23417855 MsG0680031621.01.T01:CDS 25.0%
!!! GTTGGTTTAAATAGCATTTT+GGG - Chr6:23416885-23416904 MsG0680031621.01.T01:CDS 25.0%
!!! GTTTCACTTTTGATTTCAAT+TGG - Chr6:23417665-23417684 MsG0680031621.01.T01:CDS 25.0%
!!! TCAATATTTTGATGGGTTTA+GGG - Chr6:23417843-23417862 MsG0680031621.01.T01:CDS 25.0%
!!! TCCTATGTTCAATATTTTGA+TGG - Chr6:23417835-23417854 MsG0680031621.01.T01:CDS 25.0%
!!! TTCAATATTTTGATGGGTTT+AGG - Chr6:23417842-23417861 MsG0680031621.01.T01:CDS 25.0%
!!! TTTTTAGTACCTATTACTTG+TGG - Chr6:23417306-23417325 MsG0680031621.01.T01:CDS 25.0%
AAAAAATAGGATGAAGAGGA+AGG + Chr6:23416409-23416428 None:intergenic 30.0%
ATCATTATCAGTATCATCGT+CGG + Chr6:23417225-23417244 None:intergenic 30.0%
ATGGACTTATATAATAGCTG+AGG - Chr6:23417637-23417656 MsG0680031621.01.T01:CDS 30.0%
CAATACACAAATGGAAAATG+TGG - Chr6:23417466-23417485 MsG0680031621.01.T01:CDS 30.0%
CATTCTGATTGTAGATCAAA+AGG - Chr6:23416597-23416616 MsG0680031621.01.T01:CDS 30.0%
CCCATCAAAATATTGAACAT+AGG + Chr6:23417839-23417858 None:intergenic 30.0%
TAATTCTTACGTTGTTCCTA+AGG - Chr6:23417901-23417920 MsG0680031621.01.T01:CDS 30.0%
TAGAAACTTCCACAAGTAAT+AGG + Chr6:23417318-23417337 None:intergenic 30.0%
TAGGAACAACGTAAGAATTA+GGG + Chr6:23417901-23417920 None:intergenic 30.0%
TCTTTCACAAGTTCAAACAA+TGG - Chr6:23416858-23416877 MsG0680031621.01.T01:CDS 30.0%
TGGAAAAAAATAGGATGAAG+AGG + Chr6:23416413-23416432 None:intergenic 30.0%
TGTGATGATTTAGTTGAATC+TGG - Chr6:23417179-23417198 MsG0680031621.01.T01:CDS 30.0%
TTAGGAACAACGTAAGAATT+AGG + Chr6:23417902-23417921 None:intergenic 30.0%
TTCCAATGGAAATGATGATA+AGG + Chr6:23417040-23417059 None:intergenic 30.0%
! AGTTTTCTTGGTAAACAAAG+TGG + Chr6:23417356-23417375 None:intergenic 30.0%
! ATGAGGCTTGATAAGTTTTT+AGG - Chr6:23418001-23418020 MsG0680031621.01.T01:CDS 30.0%
! GTGTTAGTCCTTCAATTTTA+GGG - Chr6:23417699-23417718 MsG0680031621.01.T01:CDS 30.0%
! TCATTGATTGGAATTGTCTT+TGG - Chr6:23417524-23417543 MsG0680031621.01.T01:CDS 30.0%
! TGGTTTAAATAGCATTTTGG+GGG - Chr6:23416887-23416906 MsG0680031621.01.T01:CDS 30.0%
!! ACAGAGTATTGAAGTAAAAG+AGG - Chr6:23417271-23417290 MsG0680031621.01.T01:CDS 30.0%
!!! AATTTTAGGGTTAACCGTTT+TGG - Chr6:23417712-23417731 MsG0680031621.01.T01:CDS 30.0%
!!! GAGTTTTTTTGGTTGTGATT+TGG + Chr6:23416367-23416386 None:intergenic 30.0%
AACTTCGTAGATGAAATGTG+TGG + Chr6:23417129-23417148 None:intergenic 35.0%
ACAACACTAGCAAAGAAATC+AGG + Chr6:23416837-23416856 None:intergenic 35.0%
ACATTACTCTCTCTAGGTAA+TGG - Chr6:23416807-23416826 MsG0680031621.01.T01:CDS 35.0%
ACCAAGAAAACTCACTATAC+CGG - Chr6:23417364-23417383 MsG0680031621.01.T01:CDS 35.0%
ACGGTTAACCCTAAAATTGA+AGG + Chr6:23417710-23417729 None:intergenic 35.0%
CAAGAAGATGTTTGTTTCCT+TGG - Chr6:23417585-23417604 MsG0680031621.01.T01:CDS 35.0%
CAAGAATTGGTGAATTTCCA+AGG + Chr6:23416656-23416675 None:intergenic 35.0%
CAAGGAAACAAACATCTTCT+TGG + Chr6:23417587-23417606 None:intergenic 35.0%
CATCTACGAAGTTGACAAAA+AGG - Chr6:23417136-23417155 MsG0680031621.01.T01:CDS 35.0%
CTCCTTATCATCATTTCCAT+TGG - Chr6:23417035-23417054 MsG0680031621.01.T01:CDS 35.0%
CTTGGAAATTCACCAATTCT+TGG - Chr6:23416654-23416673 MsG0680031621.01.T01:CDS 35.0%
GAATCTGGCATACCATTATT+AGG - Chr6:23417194-23417213 MsG0680031621.01.T01:CDS 35.0%
GGAGAATGAACAAAGAGAAA+AGG + Chr6:23417019-23417038 None:intergenic 35.0%
GTAACTGATATAACTGCGTA+TGG + Chr6:23417416-23417435 None:intergenic 35.0%
TATGCAACTAAGCTACTCTT+TGG + Chr6:23417494-23417513 None:intergenic 35.0%
! AAAGTAATTTGAAGCCGTGT+CGG + Chr6:23416727-23416746 None:intergenic 35.0%
! ATTCTATCTTTTAGCCGACA+CGG - Chr6:23416710-23416729 MsG0680031621.01.T01:CDS 35.0%
! CAGTTTTCTTCATTCACAAC+CGG + Chr6:23417386-23417405 None:intergenic 35.0%
! CTAGGTGATTTGATAGCAAA+TGG - Chr6:23417749-23417768 MsG0680031621.01.T01:CDS 35.0%
! CTTGTTTATAAGGTTAGCCA+TGG - Chr6:23418054-23418073 MsG0680031621.01.T01:CDS 35.0%
! GAGTTGGAAGTGAAAGTATA+AGG + Chr6:23416345-23416364 None:intergenic 35.0%
! GATTTTCAATGAGTGTGACA+TGG - Chr6:23417618-23417637 MsG0680031621.01.T01:CDS 35.0%
! GGTGTTAGTCCTTCAATTTT+AGG - Chr6:23417698-23417717 MsG0680031621.01.T01:CDS 35.0%
! GGTTTAAATAGCATTTTGGG+GGG - Chr6:23416888-23416907 MsG0680031621.01.T01:CDS 35.0%
! TACTTTTGCACATCTCTAGA+AGG - Chr6:23416741-23416760 MsG0680031621.01.T01:CDS 35.0%
! TCCTAAGGATAGTTCACTTT+TGG - Chr6:23417916-23417935 MsG0680031621.01.T01:CDS 35.0%
! TGGAATTGTCTTTGGAAACA+TGG - Chr6:23417532-23417551 MsG0680031621.01.T01:CDS 35.0%
! TTTGATAGCAAATGGTGCTA+TGG - Chr6:23417757-23417776 MsG0680031621.01.T01:CDS 35.0%
!! AATGGTGCTATGGCTAAAAA+TGG - Chr6:23417767-23417786 MsG0680031621.01.T01:CDS 35.0%
!! CCTAAGGATAGTTCACTTTT+GGG - Chr6:23417917-23417936 MsG0680031621.01.T01:CDS 35.0%
!! CTAAGGATAGTTCACTTTTG+GGG - Chr6:23417918-23417937 MsG0680031621.01.T01:CDS 35.0%
!! CTTGATAAGTTTTTAGGAGC+TGG - Chr6:23418007-23418026 MsG0680031621.01.T01:CDS 35.0%
!! TTTGTTTCTACAGCTGTCTT+AGG - Chr6:23416918-23416937 MsG0680031621.01.T01:CDS 35.0%
!! TTTTGGTTGTGATTTGGAGT+TGG + Chr6:23416361-23416380 None:intergenic 35.0%
!!! AGGAGAAGAGTGAGTTTTTT+TGG + Chr6:23416378-23416397 None:intergenic 35.0%
!!! GGGGACAATATTGTTTTTGA+TGG - Chr6:23417937-23417956 MsG0680031621.01.T01:CDS 35.0%
!!! GTCACACACTACTTGTTTTA+TGG - Chr6:23416676-23416695 MsG0680031621.01.T01:CDS 35.0%
AATGTTACACCAGCTATGGT+TGG + Chr6:23416792-23416811 None:intergenic 40.0%
ACCTCTTGTTCTTTCAGCAT+GGG - Chr6:23417868-23417887 MsG0680031621.01.T01:CDS 40.0%
AGAATTTCCCCAAGCCAAAA+CGG + Chr6:23417729-23417748 None:intergenic 40.0%
AGTAGTGTGTGACCAAGAAT+TGG + Chr6:23416669-23416688 None:intergenic 40.0%
CACTAGTGAGAATTCTAGCA+TGG + Chr6:23416503-23416522 None:intergenic 40.0%
CCCAAAAGTGAACTATCCTT+AGG + Chr6:23417920-23417939 None:intergenic 40.0%
CGGTTGTGAATGAAGAAAAC+TGG - Chr6:23417384-23417403 MsG0680031621.01.T01:CDS 40.0%
GAGTAATGTTACACCAGCTA+TGG + Chr6:23416796-23416815 None:intergenic 40.0%
GGAAACAAACATCTTCTTGG+TGG + Chr6:23417584-23417603 None:intergenic 40.0%
GGTGTAACATTACTCTCTCT+AGG - Chr6:23416801-23416820 MsG0680031621.01.T01:CDS 40.0%
TACCTCTTGTTCTTTCAGCA+TGG - Chr6:23417867-23417886 MsG0680031621.01.T01:CDS 40.0%
TCGTCGGCATAACCTAATAA+TGG + Chr6:23417209-23417228 None:intergenic 40.0%
TCTTTATGTTTGTGCCGTCT+CGG - Chr6:23417103-23417122 MsG0680031621.01.T01:CDS 40.0%
! ACCGGTATAGTGAGTTTTCT+TGG + Chr6:23417368-23417387 None:intergenic 40.0%
! AGCATGGTTGAAGAGTTTTG+AGG + Chr6:23416487-23416506 None:intergenic 40.0%
! ATAAGGTTAGCCATGGCAAT+TGG - Chr6:23418061-23418080 MsG0680031621.01.T01:CDS 40.0%
! GCTAAAAATGGTGGTGTTGA+TGG - Chr6:23417779-23417798 MsG0680031621.01.T01:CDS 40.0%
!! ATTAAGAGCACCAATTGCCA+TGG + Chr6:23418074-23418093 None:intergenic 40.0%
!! TGCGAATAAAATCGGTGCTA+AGG + Chr6:23417438-23417457 None:intergenic 40.0%
!!! TTTTGATGGTAGGGGTACTT+TGG - Chr6:23417951-23417970 MsG0680031621.01.T01:CDS 40.0%
AGACTTTCTCCAACCATAGC+TGG - Chr6:23416780-23416799 MsG0680031621.01.T01:CDS 45.0%
AGTTCAAACAATGGCGCAGT+TGG - Chr6:23416867-23416886 MsG0680031621.01.T01:CDS 45.0%
CCTCTTGTTCTTTCAGCATG+GGG - Chr6:23417869-23417888 MsG0680031621.01.T01:CDS 45.0%
CTCTTGTTCTTTCAGCATGG+GGG - Chr6:23417870-23417889 MsG0680031621.01.T01:CDS 45.0%
TCTTGTTCTTTCAGCATGGG+GGG - Chr6:23417871-23417890 MsG0680031621.01.T01:CDS 45.0%
TGAAGAGGAAGGATGTGTTG+AGG + Chr6:23416398-23416417 None:intergenic 45.0%
TGTTTGTTTCCTTGGCTAGC+TGG - Chr6:23417593-23417612 MsG0680031621.01.T01:CDS 45.0%
! GGTGCTATGGCTAAAAATGG+TGG - Chr6:23417770-23417789 MsG0680031621.01.T01:CDS 45.0%
!! GCTGTTTCAGGTTGTTATGC+TGG - Chr6:23417812-23417831 MsG0680031621.01.T01:CDS 45.0%
!! GGTGCACAAATTGCTGTTTC+AGG - Chr6:23417800-23417819 MsG0680031621.01.T01:CDS 45.0%
!! TTGGCTTGGGGAAATTCTCT+AGG - Chr6:23417731-23417750 MsG0680031621.01.T01:CDS 45.0%
!!! AGGGTTAACCGTTTTGGCTT+GGG - Chr6:23417718-23417737 MsG0680031621.01.T01:CDS 45.0%
!!! TAGGGTTAACCGTTTTGGCT+TGG - Chr6:23417717-23417736 MsG0680031621.01.T01:CDS 45.0%
CCCCATGCTGAAAGAACAAG+AGG + Chr6:23417872-23417891 None:intergenic 50.0%
GAAAATCCACCAGCTAGCCA+AGG + Chr6:23417605-23417624 None:intergenic 50.0%
GATGAAATGTGTGGCCGAGA+CGG + Chr6:23417120-23417139 None:intergenic 50.0%
! TTGTTTCCTTGGCTAGCTGG+TGG - Chr6:23417596-23417615 MsG0680031621.01.T01:CDS 50.0%
!!! GGGTTAACCGTTTTGGCTTG+GGG - Chr6:23417719-23417738 MsG0680031621.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
Chr6 gene 23416336 23418096 23416336 ID=MsG0680031621.01;Name=MsG0680031621.01
Chr6 mRNA 23416336 23418096 23416336 ID=MsG0680031621.01.T01;Parent=MsG0680031621.01;Name=MsG0680031621.01.T01;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|586
Chr6 exon 23416336 23418096 23416336 ID=MsG0680031621.01.T01:exon:2107;Parent=MsG0680031621.01.T01
Chr6 CDS 23416336 23418096 23416336 ID=MsG0680031621.01.T01:cds;Parent=MsG0680031621.01.T01
Gene Sequence

>MsG0680031621.01.T01

ATGGCACCTTATACTTTCACTTCCAACTCCAAATCACAACCAAAAAAACTCACTCTTCTCCTCAACACATCCTTCCTCTTCATCCTATTTTTTTCCATCAAACTTTATATCAATCCTTCAAATTCTAATTCTCATTTTCATCATGTTTCCTCAAAACTCTTCAACCATGCTAGAATTCTCACTAGTGACATCATAGTTGATTCATGCTCAGAACTTCACAATTACTCAAATTACACTTCTAAGTGTATTTATGTCAAAACACATTCTGATTGTAGATCAAAAGGTTACATAAACTATCTTCAAATCTTTTATTGTAACCTTGGAAATTCACCAATTCTTGGTCACACACTACTTGTTTTATGGCTAGTAATTCTATTCTATCTTTTAGCCGACACGGCTTCAAATTACTTTTGCACATCTCTAGAAGGTTTGTCTAACATCTTAAGACTTTCTCCAACCATAGCTGGTGTAACATTACTCTCTCTAGGTAATGGTGCTCCTGATTTCTTTGCTAGTGTTGTTTCTTTCACAAGTTCAAACAATGGCGCAGTTGGTTTAAATAGCATTTTGGGGGGTGCATTTTTTGTTTCTACAGCTGTCTTAGGCATCATAAGTTTTATAGTTAGTTCCAATGAAGTTTCAGTTGATAAAGCTAGTTTCATTAGAGATGTCATTTTCTTCCTTTTCTCTTTGTTCATTCTCCTTATCATCATTTCCATTGGAAAGATTAGTCTTTTTGGTTCAATTTGCTACCTTTCTATCTATTTTCTTTATGTTTGTGCCGTCTCGGCCACACATTTCATCTACGAAGTTGACAAAAAGGAAGTTGAATCTTCATCATCTTGTGATGATTTAGTTGAATCTGGCATACCATTATTAGGTTATGCCGACGATGATACTGATAATGATAATGATTCTCATCAGAAACCGATTTTACAGAGTATTGAAGTAAAAGAGGAGAAGAAAGAAATTTTTAGTACCTATTACTTGTGGAAGTTTCTAGAAGTACTTGAATTACCACTTTGTTTACCAAGAAAACTCACTATACCGGTTGTGAATGAAGAAAACTGGTCGAAACCATACGCAGTTATATCAGTTACCTTAGCACCGATTTTATTCGCAATTCTTTGCAATACACAAATGGAAAATGTGGATCCAAAGAGTAGCTTAGTTGCATATTTAACATCATCATTGATTGGAATTGTCTTTGGAAACATGGCATGTGTGACAACAAAGAGTACAAGACCACCAAGAAGATGTTTGTTTCCTTGGCTAGCTGGTGGATTTTCAATGAGTGTGACATGGACTTATATAATAGCTGAGGAACTTGTTTCACTTTTGATTTCAATTGGATATGTAATTGGTGTTAGTCCTTCAATTTTAGGGTTAACCGTTTTGGCTTGGGGAAATTCTCTAGGTGATTTGATAGCAAATGGTGCTATGGCTAAAAATGGTGGTGTTGATGGTGCACAAATTGCTGTTTCAGGTTGTTATGCTGGTCCTATGTTCAATATTTTGATGGGTTTAGGGTTACCTCTTGTTCTTTCAGCATGGGGGGAATACCCTAATTCTTACGTTGTTCCTAAGGATAGTTCACTTTTGGGGACAATATTGTTTTTGATGGTAGGGGTACTTTGGTCACTTGTTGTTTTAGTTAAGAAGAATATGAGGCTTGATAAGTTTTTAGGAGCTGGTCTCTTGACCATTTACCTTTGTTTCTTGTTTATAAGGTTAGCCATGGCAATTGGTGCTCTTAATTAA

Protein sequence

>MsG0680031621.01.T01

MAPYTFTSNSKSQPKKLTLLLNTSFLFILFFSIKLYINPSNSNSHFHHVSSKLFNHARILTSDIIVDSCSELHNYSNYTSKCIYVKTHSDCRSKGYINYLQIFYCNLGNSPILGHTLLVLWLVILFYLLADTASNYFCTSLEGLSNILRLSPTIAGVTLLSLGNGAPDFFASVVSFTSSNNGAVGLNSILGGAFFVSTAVLGIISFIVSSNEVSVDKASFIRDVIFFLFSLFILLIIISIGKISLFGSICYLSIYFLYVCAVSATHFIYEVDKKEVESSSSCDDLVESGIPLLGYADDDTDNDNDSHQKPILQSIEVKEEKKEIFSTYYLWKFLEVLELPLCLPRKLTIPVVNEENWSKPYAVISVTLAPILFAILCNTQMENVDPKSSLVAYLTSSLIGIVFGNMACVTTKSTRPPRRCLFPWLAGGFSMSVTWTYIIAEELVSLLISIGYVIGVSPSILGLTVLAWGNSLGDLIANGAMAKNGGVDGAQIAVSGCYAGPMFNILMGLGLPLVLSAWGEYPNSYVVPKDSSLLGTILFLMVGVLWSLVVLVKKNMRLDKFLGAGLLTIYLCFLFIRLAMAIGALN*