AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028836.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028836.01.T01 MTR_5g076320 79.167 936 116 7 1 909 1 884 0.0 1479
MsG0580028836.01.T01 MTR_5g076310 67.203 933 223 13 1 924 1 859 0.0 1187
MsG0580028836.01.T01 MTR_5g076380 60.226 973 246 18 1 924 1 881 0.0 1057
MsG0580028836.01.T01 MTR_5g076500 59.534 944 243 19 1 905 2 845 0.0 997
MsG0580028836.01.T01 MTR_5g076440 56.947 950 276 15 5 905 11 876 0.0 983
MsG0580028836.01.T01 MTR_3g064190 51.016 935 338 17 14 908 15 869 0.0 852
MsG0580028836.01.T01 MTR_5g076330 51.121 937 322 13 14 902 10 858 0.0 852
MsG0580028836.01.T01 MTR_5g076300 47.906 979 340 17 14 920 17 897 0.0 819
MsG0580028836.01.T01 MTR_3g436400 33.776 980 466 28 11 904 15 897 3.42e-157 503
MsG0580028836.01.T01 MTR_0189s0030 35.421 926 440 25 43 896 8 847 6.04e-151 494
MsG0580028836.01.T01 MTR_3g064210 43.191 470 210 6 452 896 499 936 6.18e-117 384
MsG0580028836.01.T01 MTR_3g064210 39.220 436 215 7 17 448 16 405 2.73e-79 280
MsG0580028836.01.T01 MTR_8g020390 36.095 338 171 10 542 870 457 758 7.40e-47 181
MsG0580028836.01.T01 MTR_8g020390 36.095 338 171 10 542 870 745 1046 1.87e-46 181
MsG0580028836.01.T01 MTR_8g020390 36.095 338 171 10 542 870 962 1263 2.95e-46 181
MsG0580028836.01.T01 MTR_3g078040 38.577 267 99 9 35 297 56 261 3.82e-42 155
MsG0580028836.01.T01 MTR_5g053930 33.846 325 186 6 550 873 455 751 2.76e-41 164
MsG0580028836.01.T01 MTR_1g052700 33.333 294 167 6 584 875 41 307 4.97e-40 151
MsG0580028836.01.T01 MTR_2g105760 35.168 327 164 8 565 874 1778 2073 8.57e-39 157
MsG0580028836.01.T01 MTR_5g013820 34.701 268 157 6 578 842 641 893 4.80e-34 142
MsG0580028836.01.T01 MTR_5g013820 34.701 268 157 6 578 842 641 893 6.18e-34 141
MsG0580028836.01.T01 MTR_7g092200 36.713 286 131 12 551 814 348 605 1.06e-28 123
MsG0580028836.01.T01 MTR_1g040155 32.414 290 163 11 544 814 584 859 2.54e-25 113
MsG0580028836.01.T01 MTR_5g080800 41.985 131 47 2 766 896 12 113 1.26e-23 108
MsG0580028836.01.T01 MTR_5g006890 31.469 286 152 10 578 842 541 803 1.88e-21 101
MsG0580028836.01.T01 MTR_5g006890 31.469 286 152 10 578 842 282 544 2.14e-21 100
MsG0580028836.01.T01 MTR_2g049990 31.469 286 152 10 578 842 282 544 2.14e-21 100
MsG0580028836.01.T01 MTR_2g049990 31.469 286 152 10 578 842 541 803 2.25e-21 100
MsG0580028836.01.T01 MTR_1g038815 25.891 533 311 23 319 818 892 1373 1.92e-19 95.1
MsG0580028836.01.T01 MTR_8g063020 40.602 133 55 4 18 137 169 290 5.56e-18 86.7
MsG0580028836.01.T01 MTR_4g061370 43.243 111 52 2 35 145 527 626 1.06e-17 89.4
MsG0580028836.01.T01 MTR_1g047040 63.265 49 16 1 836 882 6 54 2.30e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028836.01.T01 AT1G65810 44.855 894 392 19 14 884 22 837 0.0 679
MsG0580028836.01.T01 AT1G65810 44.855 894 392 19 14 884 22 837 0.0 679
MsG0580028836.01.T01 AT1G65810 44.855 894 392 19 14 884 22 837 0.0 679
MsG0580028836.01.T01 AT1G65780 39.709 962 411 19 14 902 11 876 0.0 608
MsG0580028836.01.T01 AT5G37140 43.750 736 324 20 221 913 2 690 0.0 542
MsG0580028836.01.T01 AT5G52090 44.139 691 312 18 237 889 1 655 4.85e-179 534
MsG0580028836.01.T01 AT5G37150 42.816 696 322 17 232 889 161 818 2.67e-173 525
MsG0580028836.01.T01 AT5G37150 41.333 150 73 5 7 156 2 136 3.29e-21 100
MsG0580028836.01.T01 AT4G05540 43.299 679 291 16 233 856 50 689 3.13e-166 501
MsG0580028836.01.T01 AT5G37165 45.946 444 198 11 466 900 1 411 8.32e-121 374
MsG0580028836.01.T01 AT5G37030 53.943 317 121 2 571 886 344 636 5.74e-111 355
MsG0580028836.01.T01 AT5G37030 50.000 156 73 3 291 444 198 350 5.11e-29 124
MsG0580028836.01.T01 AT5G37030 38.849 139 76 3 7 145 2 131 3.93e-18 89.7
MsG0580028836.01.T01 AT2G19120 35.030 334 180 9 542 870 742 1043 1.03e-45 179
MsG0580028836.01.T01 AT4G15570 33.435 329 183 7 545 868 365 662 1.04e-44 173
MsG0580028836.01.T01 AT4G15570 33.435 329 183 7 545 868 365 662 1.04e-44 173
MsG0580028836.01.T01 AT4G15570 33.951 324 178 7 550 868 459 751 2.01e-44 173
MsG0580028836.01.T01 AT4G15570 33.951 324 178 7 550 868 459 751 2.01e-44 173
MsG0580028836.01.T01 AT4G30100 33.923 339 185 10 542 874 905 1210 9.55e-43 169
MsG0580028836.01.T01 AT4G30100 33.923 339 185 10 542 874 905 1210 9.55e-43 169
MsG0580028836.01.T01 AT5G37160 40.260 231 107 4 233 433 180 409 7.27e-40 154
MsG0580028836.01.T01 AT5G37160 34.810 158 85 6 7 159 11 155 2.62e-13 73.9
MsG0580028836.01.T01 AT1G16800 27.106 546 329 17 345 870 1427 1923 5.16e-38 155
MsG0580028836.01.T01 AT1G16800 27.106 546 329 17 345 870 1385 1881 6.18e-38 155
MsG0580028836.01.T01 AT1G16800 27.106 546 329 17 345 870 1497 1993 6.21e-38 155
MsG0580028836.01.T01 AT5G47010 29.971 347 197 10 578 916 653 961 2.49e-33 139
MsG0580028836.01.T01 AT2G03270 35.252 278 152 13 549 814 339 600 2.25e-25 112
MsG0580028836.01.T01 AT5G35970 34.146 287 156 12 550 817 638 910 9.84e-25 111
MsG0580028836.01.T01 AT1G05460 30.877 285 156 9 578 842 542 805 3.88e-21 100
MsG0580028836.01.T01 AT1G05460 30.420 286 156 10 578 842 542 805 4.40e-21 100
MsG0580028836.01.T01 AT2G38770 29.330 358 215 15 578 916 1120 1458 1.34e-18 92.4
MsG0580028836.01.T01 AT1G08840 27.586 261 141 9 579 814 1053 1290 2.55e-14 78.2
MsG0580028836.01.T01 AT1G08840 27.586 261 141 9 579 814 1050 1287 2.69e-14 78.2
MsG0580028836.01.T01 AT1G08840 27.586 261 141 9 579 814 1037 1274 2.72e-14 78.2
MsG0580028836.01.T01 AT1G08840 27.586 261 141 9 579 814 1018 1255 3.19e-14 77.8

Find 156 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGTCATTTAAGCTTTC+AGG 0.127572 5:+87292576 None:intergenic
AACATTCACACATGTTAATT+TGG 0.168271 5:+87289870 None:intergenic
TTTGAATACAAGAAGATATT+TGG 0.191015 5:-87291497 MsG0580028836.01.T01:CDS
ATGCTGATATCAAACTTATA+TGG 0.207233 5:-87291895 MsG0580028836.01.T01:CDS
TTAGTCTCCCATCCAGTATT+TGG 0.212592 5:+87291590 None:intergenic
AAATACTGTCTTTGGATATT+AGG 0.235921 5:-87290128 MsG0580028836.01.T01:CDS
TTAGGTGACATTGTGCTATT+TGG 0.241240 5:-87291704 MsG0580028836.01.T01:CDS
TGCACTGGCTTCACCTTTGC+TGG 0.242919 5:+87291137 None:intergenic
ATCCTCTTCACTTTCATTAC+TGG 0.258255 5:+87293532 None:intergenic
GTAAATGTTCGTTCTGTTGA+TGG 0.259767 5:-87290338 MsG0580028836.01.T01:CDS
TCATGTGTGAGGTTGATTTC+AGG 0.280798 5:+87292244 None:intergenic
TGCTCAGGTTTATGAAATTC+AGG 0.289012 5:-87290405 MsG0580028836.01.T01:CDS
CTCATGTCAATGTTAAATTT+AGG 0.292464 5:+87291254 None:intergenic
TCTGATGAAGTTGAAAATAT+TGG 0.296974 5:-87292648 MsG0580028836.01.T01:CDS
ACGGCGTTTAGGAGGGAAAA+TGG 0.297803 5:-87289934 MsG0580028836.01.T01:CDS
ATTCTTCCAGTCGTTGAATC+TGG 0.301086 5:+87289976 None:intergenic
AGGCGATACGGTAGGGGTTT+TGG 0.316658 5:+87292547 None:intergenic
CAATGCTTTAATCCAAATAC+TGG 0.318465 5:-87291602 MsG0580028836.01.T01:CDS
TCATAAACCTGAGCATTATA+TGG 0.324841 5:+87290413 None:intergenic
AGCTTGAAACAGCATCTTCT+TGG 0.329857 5:+87291942 None:intergenic
GATCATGATACATATGGTTT+AGG 0.333976 5:-87291722 MsG0580028836.01.T01:CDS
ATAGCAGACCAATGTGAATT+TGG 0.341801 5:-87290900 MsG0580028836.01.T01:CDS
ATGAAGGTAGATCGACTATC+TGG 0.349186 5:+87292007 None:intergenic
TTTGTTAGCAAATTTCTTCA+TGG 0.353735 5:+87291538 None:intergenic
ATGTCTCATTTCATTGGAAA+TGG 0.356476 5:-87291417 MsG0580028836.01.T01:CDS
CTTGATTTGCTAAGGTCTCT+TGG 0.362091 5:-87291374 MsG0580028836.01.T01:CDS
AAGGTCTCTTGGAAATTCCT+TGG 0.364902 5:-87291363 MsG0580028836.01.T01:CDS
TGCAAAATTGCAGTATTAGT+TGG 0.368307 5:+87291785 None:intergenic
TAATCAACAGTGACTCTGTT+TGG 0.369827 5:-87290091 MsG0580028836.01.T01:CDS
CCTAAACGCCGTTTCTTGAA+TGG 0.370619 5:+87289945 None:intergenic
CCATTCAAGAAACGGCGTTT+AGG 0.370861 5:-87289945 MsG0580028836.01.T01:CDS
AGGTCTCTTGGAAATTCCTT+GGG 0.371531 5:-87291362 MsG0580028836.01.T01:CDS
ACATTATTGATCTCACAAAA+AGG 0.373241 5:+87292762 None:intergenic
TGCTGATATCAAACTTATAT+GGG 0.374218 5:-87291894 MsG0580028836.01.T01:CDS
GCCAACATGTCTCATTTCAT+TGG 0.376355 5:-87291423 MsG0580028836.01.T01:CDS
CATTTGTTGTCATGTTCATA+AGG 0.383088 5:+87292283 None:intergenic
TCATTGCTTTCACACACATT+AGG 0.388248 5:-87292599 MsG0580028836.01.T01:CDS
AATATTCATCTTCATGCATT+CGG 0.392803 5:+87292353 None:intergenic
TCACTTGATCATGATACATA+TGG 0.393125 5:-87291728 MsG0580028836.01.T01:CDS
TATCTGATGCTCCCATTGTC+AGG 0.393935 5:-87290758 MsG0580028836.01.T01:CDS
AAGAGTACATTTCTCCTTCA+AGG 0.396644 5:+87290712 None:intergenic
TTCAACATCCATCATGCAAT+TGG 0.405883 5:+87292407 None:intergenic
AGTTATTGATGCTAAGAATA+GGG 0.406528 5:-87290060 MsG0580028836.01.T01:CDS
ATATCTACCGTGAGATCTAA+TGG 0.406558 5:-87290284 MsG0580028836.01.T01:CDS
CATGTGTGAGGTTGATTTCA+GGG 0.407399 5:+87292245 None:intergenic
TGTTGGCATGTGTGTGTGTA+AGG 0.413125 5:+87291439 None:intergenic
GCTTGAAACAGCATCTTCTT+GGG 0.426070 5:+87291943 None:intergenic
TAGTTATTGATGCTAAGAAT+AGG 0.429708 5:-87290061 MsG0580028836.01.T01:CDS
AAGTCTGAAGAACATGGTTC+AGG 0.431895 5:-87290637 MsG0580028836.01.T01:CDS
GTTGTCTCTCATCTCCGATT+AGG 0.431949 5:+87291030 None:intergenic
AATATAATTAAAACAGTGTT+GGG 0.435420 5:-87292222 MsG0580028836.01.T01:CDS
CTCCACCGTTGCATCCTAAT+CGG 0.437172 5:-87291044 MsG0580028836.01.T01:CDS
TCGGTTGCATAGGTTAGTTA+TGG 0.440947 5:-87291753 MsG0580028836.01.T01:CDS
GTGGCTGACTTAAACGTCTC+TGG 0.444543 5:+87292870 None:intergenic
GGAAATTATAAACCTGTGTC+AGG 0.444557 5:-87292627 MsG0580028836.01.T01:CDS
GCTAAGGGTAAAGAGCAATT+TGG 0.445056 5:-87290669 MsG0580028836.01.T01:CDS
CTTGATTACCTTCTTAACAT+AGG 0.451230 5:+87292527 None:intergenic
AGAAAGACATTGACAAGGCC+TGG 0.454988 5:+87291650 None:intergenic
TTCGCACGGGAATAAGCTAA+TGG 0.459341 5:+87290800 None:intergenic
TACAGTTCCATCATGACATA+TGG 0.461642 5:-87292689 MsG0580028836.01.T01:CDS
GACATTGTGCTATTTGGAAA+TGG 0.464393 5:-87291698 MsG0580028836.01.T01:CDS
ATATGGGGACCACCAGGGAC+AGG 0.468887 5:-87291878 MsG0580028836.01.T01:CDS
TAGCTTTCTTCCCTGACAAT+GGG 0.469265 5:+87290747 None:intergenic
GTTTGAAAGAATTGTAATGT+TGG 0.471407 5:-87290868 MsG0580028836.01.T01:CDS
AACAATTCCATTACAGCTGT+CGG 0.482727 5:-87291069 MsG0580028836.01.T01:CDS
TGGAGACCCGACAGCTGTAA+TGG 0.484216 5:+87291062 None:intergenic
GAATATAATTAAAACAGTGT+TGG 0.489127 5:-87292223 MsG0580028836.01.T01:CDS
TTCAAGCTCTTGATTTGCTA+AGG 0.490192 5:-87291382 MsG0580028836.01.T01:CDS
TGCTATTTGGAAATGGTAAG+AGG 0.490292 5:-87291691 MsG0580028836.01.T01:CDS
AGCTATGTTAATAAAAGAAT+AGG 0.495035 5:+87290689 None:intergenic
TTCAAGAAACGGCGTTTAGG+AGG 0.495052 5:-87289942 MsG0580028836.01.T01:CDS
AACAAATGTGGCTATGACTA+GGG 0.495248 5:-87290225 MsG0580028836.01.T01:CDS
GGAGTTCAGCAACTCTATCA+TGG 0.495440 5:+87291559 None:intergenic
TTTGAAAGAATTGTAATGTT+GGG 0.497684 5:-87290867 MsG0580028836.01.T01:CDS
ATAATTAAAAGTCTTTATGA+AGG 0.499892 5:-87290597 MsG0580028836.01.T01:intron
CATGATGGAACTGTATGAAT+TGG 0.504598 5:+87292697 None:intergenic
CGGCGTTTAGGAGGGAAAAT+GGG 0.506969 5:-87289933 MsG0580028836.01.T01:CDS
TTGAGTCACCATTCAAGAAA+CGG 0.508950 5:-87289953 MsG0580028836.01.T01:CDS
TTAACATAGGCGATACGGTA+GGG 0.510070 5:+87292540 None:intergenic
GAACAAATGTGGCTATGACT+AGG 0.512010 5:-87290226 MsG0580028836.01.T01:CDS
CATATCTCCATATAATGCTC+AGG 0.512518 5:-87290420 MsG0580028836.01.T01:CDS
TGTCAATGTTAAATTTAGGA+AGG 0.513940 5:+87291258 None:intergenic
CTTGAATTTGGCTTGCCCCA+AGG 0.515997 5:+87291346 None:intergenic
CCGTGCGAAGAGTTCTATGA+TGG 0.516329 5:-87290786 MsG0580028836.01.T01:CDS
ACCGTGAGATCTAATGGTAC+TGG 0.518270 5:-87290278 MsG0580028836.01.T01:CDS
TGGAGCACATGTCAATGTCC+TGG 0.518568 5:+87291805 None:intergenic
CCGTATCGCCTATGTTAAGA+AGG 0.518702 5:-87292535 MsG0580028836.01.T01:CDS
CTATGTTAAGAAGGTAATCA+AGG 0.526997 5:-87292526 MsG0580028836.01.T01:CDS
AAGGTAATCAAGGCAAGGAA+TGG 0.530345 5:-87292516 MsG0580028836.01.T01:CDS
TCCAATGAAATGAGACATGT+TGG 0.531006 5:+87291422 None:intergenic
TCGAGGATGTTGTACTCTCA+TGG 0.532307 5:-87293502 MsG0580028836.01.T01:CDS
ACAATTCCATTACAGCTGTC+GGG 0.533970 5:-87291068 MsG0580028836.01.T01:CDS
CCTTCTTAACATAGGCGATA+CGG 0.534776 5:+87292535 None:intergenic
AAACTTATATGGGGACCACC+AGG 0.535882 5:-87291884 MsG0580028836.01.T01:CDS
TCTGTTCCAGATTCAACGAC+TGG 0.536252 5:-87289982 MsG0580028836.01.T01:CDS
ACAGAACATTCTTAATAGCC+CGG 0.537690 5:+87290000 None:intergenic
GCTTTAATCCAAATACTGGA+TGG 0.540368 5:-87291598 MsG0580028836.01.T01:CDS
GTCAATGTTAAATTTAGGAA+GGG 0.543604 5:+87291259 None:intergenic
GTCATGCAAATGCATGAAGA+TGG 0.544816 5:-87292469 MsG0580028836.01.T01:CDS
TCTAATGGTACTGGTGATGT+TGG 0.546314 5:-87290269 MsG0580028836.01.T01:CDS
AGGTGGCAATTCGGTTGCAT+AGG 0.549979 5:-87291763 MsG0580028836.01.T01:CDS
TTGTTTCCACAATGCTGAAG+AGG 0.550324 5:-87290036 MsG0580028836.01.T01:CDS
AGGAAATTGAGCAGTACACT+CGG 0.550497 5:-87290382 MsG0580028836.01.T01:CDS
ACATATCAACTACTTTCTCT+AGG 0.550836 5:-87289902 MsG0580028836.01.T01:CDS
ATAGCTTTCTTCCCTGACAA+TGG 0.550979 5:+87290746 None:intergenic
CTTTAATCCAAATACTGGAT+GGG 0.558579 5:-87291597 MsG0580028836.01.T01:CDS
TAACATAGGCGATACGGTAG+GGG 0.562252 5:+87292541 None:intergenic
AAAGTGAACTTAGTATGCTA+AGG 0.562963 5:+87291294 None:intergenic
TCTTCAGCCATATGTCATGA+TGG 0.567416 5:+87292682 None:intergenic
AAAAGAGTTCTTGTATTCTG+TGG 0.570824 5:+87292851 None:intergenic
TCAAGAAACGGCGTTTAGGA+GGG 0.570826 5:-87289941 MsG0580028836.01.T01:CDS
ATGTGGCTATGACTAGGGCT+AGG 0.571180 5:-87290220 MsG0580028836.01.T01:CDS
ATCGACTATCTGGTTCAGAC+AGG 0.573307 5:+87292017 None:intergenic
GGTAAAGAGCAATTTGGTCA+TGG 0.575475 5:-87290663 MsG0580028836.01.T01:CDS
ACAAGGAAGAAAGTTAGCAT+AGG 0.580771 5:-87290446 MsG0580028836.01.T01:CDS
CCATCATAGAACTCTTCGCA+CGG 0.582805 5:+87290786 None:intergenic
AGATGACTTGTGGAAGAACA+AGG 0.583942 5:-87292328 MsG0580028836.01.T01:CDS
ACCAGTACCATTAGATCTCA+CGG 0.585010 5:+87290277 None:intergenic
AACCAGTAATGAAAGTGAAG+AGG 0.586546 5:-87293534 MsG0580028836.01.T01:CDS
GCTATCATCCAATTGCATGA+TGG 0.594234 5:-87292415 MsG0580028836.01.T01:CDS
ATCTGATGCTCCCATTGTCA+GGG 0.594382 5:-87290757 MsG0580028836.01.T01:CDS
CACGGGAATAAGCTAATGGA+AGG 0.595715 5:+87290804 None:intergenic
CAGAACATTCTTAATAGCCC+GGG 0.595796 5:+87290001 None:intergenic
TTTAATTATATTCATGTGTG+AGG 0.595989 5:+87292233 None:intergenic
CATCATAGAACTCTTCGCAC+GGG 0.599208 5:+87290787 None:intergenic
ACATTGACAAGGCCTGGATG+AGG 0.599408 5:+87291656 None:intergenic
TATGGGGACCACCAGGGACA+GGG 0.599903 5:-87291877 MsG0580028836.01.T01:CDS
GCAATTGGATGATAGCTCCT+TGG 0.601079 5:+87292422 None:intergenic
ATGAAATTAAGTCCTCATCC+AGG 0.605229 5:-87291668 MsG0580028836.01.T01:CDS
TGAATATTGAAGATGACTTG+TGG 0.605497 5:-87292338 MsG0580028836.01.T01:CDS
CATCTCCGATTAGGATGCAA+CGG 0.610928 5:+87291039 None:intergenic
GAAACTAATTGATCCAGCAA+AGG 0.611704 5:-87291150 MsG0580028836.01.T01:CDS
TTTGTTCAGAACATCCTCGA+GGG 0.615955 5:+87293478 None:intergenic
TGTGTTTCCTCAAACAATAG+AGG 0.616517 5:+87292825 None:intergenic
TGCCAGTGTTCATGAAGACA+AGG 0.619804 5:-87290463 MsG0580028836.01.T01:intron
GGAAATTGAGCAGTACACTC+GGG 0.620554 5:-87290381 MsG0580028836.01.T01:CDS
TGAAGAGGATGTTCGACTCG+AGG 0.621652 5:-87293519 MsG0580028836.01.T01:CDS
TTAAGAAGGTAATCAAGGCA+AGG 0.623298 5:-87292521 MsG0580028836.01.T01:CDS
AAATTTAACATTGACATGAG+AGG 0.626648 5:-87291251 MsG0580028836.01.T01:CDS
CTTAACATAGGCGATACGGT+AGG 0.632234 5:+87292539 None:intergenic
TACTTCGTCCAAATTCACAT+TGG 0.633182 5:+87290892 None:intergenic
TGGACAAAGTCTGAAGAACA+TGG 0.636091 5:-87290643 MsG0580028836.01.T01:CDS
AAATAGACAAAGAACAAATG+TGG 0.638430 5:-87290237 MsG0580028836.01.T01:CDS
AACTTATATGGGGACCACCA+GGG 0.643082 5:-87291883 MsG0580028836.01.T01:CDS
AACTACTTTCTCTAGGCGAG+TGG 0.643303 5:-87289895 MsG0580028836.01.T01:CDS
GCTGATATCAAACTTATATG+GGG 0.644417 5:-87291893 MsG0580028836.01.T01:CDS
GCAATGAGATCTCCTGACAC+AGG 0.658736 5:+87292615 None:intergenic
GGTCTCTTGGAAATTCCTTG+GGG 0.661476 5:-87291361 MsG0580028836.01.T01:CDS
AGTATTCTTACAATTGGACG+CGG 0.662302 5:+87292198 None:intergenic
ATTGAATGAGATTCTCTACA+CGG 0.664980 5:+87291621 None:intergenic
CTCCGATTAGGATGCAACGG+TGG 0.685534 5:+87291042 None:intergenic
TCAGGTTTATGAAATTCAGG+AGG 0.685808 5:-87290402 MsG0580028836.01.T01:CDS
GACAGGGAAAACAAAGACAG+TGG 0.696564 5:-87291861 MsG0580028836.01.T01:CDS
AGATGACTTGCAGAACACCA+AGG 0.710559 5:-87292439 MsG0580028836.01.T01:CDS
TGTACTCTCATGGACCCTCG+AGG 0.722293 5:-87293492 MsG0580028836.01.T01:CDS
TATCGAGAAAGACATTGACA+AGG 0.728740 5:+87291645 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAGATAATGTAATTAAT+TGG + Chr5:87290255-87290274 None:intergenic 10.0%
!! AATATAATTAAAACAGTGTT+GGG - Chr5:87291204-87291223 MsG0580028836.01.T01:CDS 15.0%
!! ATAATTAAAAGTCTTTATGA+AGG - Chr5:87292829-87292848 MsG0580028836.01.T01:CDS 15.0%
!! GTTAATTTATATGATGTTTA+TGG - Chr5:87290213-87290232 MsG0580028836.01.T01:CDS 15.0%
!!! AAAGTTATTTTTCTTGAATT+TGG + Chr5:87292095-87292114 None:intergenic 15.0%
!!! TTTTACAAACTAAAACAAAA+TGG + Chr5:87290332-87290351 None:intergenic 15.0%
!!! TTTTAGTTTGTAAAATAGTA+TGG - Chr5:87290337-87290356 MsG0580028836.01.T01:CDS 15.0%
!! AGCTATGTTAATAAAAGAAT+AGG + Chr5:87292740-87292759 None:intergenic 20.0%
!! GAATATAATTAAAACAGTGT+TGG - Chr5:87291203-87291222 MsG0580028836.01.T01:CDS 20.0%
!! GTATGCTATATATTAAATGA+AGG + Chr5:87291276-87291295 None:intergenic 20.0%
!! TTTAATTATATTCATGTGTG+AGG + Chr5:87291196-87291215 None:intergenic 20.0%
!! TTTGAAAGAATTGTAATGTT+GGG - Chr5:87292559-87292578 MsG0580028836.01.T01:CDS 20.0%
!! TTTGAATACAAGAAGATATT+TGG - Chr5:87291929-87291948 MsG0580028836.01.T01:CDS 20.0%
!!! AATACAAAAAAGCATTAAAC+AGG + Chr5:87291362-87291381 None:intergenic 20.0%
!!! ATAAAGATCGACTATTTTTA+TGG - Chr5:87290063-87290082 MsG0580028836.01.T01:CDS 20.0%
!!! CAAAAAATTTTACAAAGACA+AGG - Chr5:87289967-87289986 MsG0580028836.01.T01:CDS 20.0%
!!! TCTTTTATTAACATAGCTAA+GGG - Chr5:87292742-87292761 MsG0580028836.01.T01:CDS 20.0%
!!! TTCAAAAGTAATTTTTCATG+CGG + Chr5:87291304-87291323 None:intergenic 20.0%
!!! TTCTTTTATTAACATAGCTA+AGG - Chr5:87292741-87292760 MsG0580028836.01.T01:CDS 20.0%
! AAATACTGTCTTTGGATATT+AGG - Chr5:87293298-87293317 MsG0580028836.01.T01:intron 25.0%
! AAATAGACAAAGAACAAATG+TGG - Chr5:87293189-87293208 MsG0580028836.01.T01:intron 25.0%
! AAATTTAACATTGACATGAG+AGG - Chr5:87292175-87292194 MsG0580028836.01.T01:intron 25.0%
! AATATTCATCTTCATGCATT+CGG + Chr5:87291076-87291095 None:intergenic 25.0%
! ACATTATTGATCTCACAAAA+AGG + Chr5:87290667-87290686 None:intergenic 25.0%
! AGTTATTGATGCTAAGAATA+GGG - Chr5:87293366-87293385 MsG0580028836.01.T01:intron 25.0%
! ATAATGTTCAAAAAACTGCA+TGG - Chr5:87290680-87290699 MsG0580028836.01.T01:CDS 25.0%
! ATGCTGATATCAAACTTATA+TGG - Chr5:87291531-87291550 MsG0580028836.01.T01:CDS 25.0%
! CATTGTAAAGAATCTAAAGA+TGG + Chr5:87290000-87290019 None:intergenic 25.0%
! CTCATGTCAATGTTAAATTT+AGG + Chr5:87292175-87292194 None:intergenic 25.0%
! GTCAATGTTAAATTTAGGAA+GGG + Chr5:87292170-87292189 None:intergenic 25.0%
! GTTTGAAAGAATTGTAATGT+TGG - Chr5:87292558-87292577 MsG0580028836.01.T01:CDS 25.0%
! TAGTTATTGATGCTAAGAAT+AGG - Chr5:87293365-87293384 MsG0580028836.01.T01:intron 25.0%
! TCTGATGAAGTTGAAAATAT+TGG - Chr5:87290778-87290797 MsG0580028836.01.T01:CDS 25.0%
! TGCTGATATCAAACTTATAT+GGG - Chr5:87291532-87291551 MsG0580028836.01.T01:CDS 25.0%
! TGTCAATGTTAAATTTAGGA+AGG + Chr5:87292171-87292190 None:intergenic 25.0%
! TTTGTTAGCAAATTTCTTCA+TGG + Chr5:87291891-87291910 None:intergenic 25.0%
!! AATACTCTTTTGATCTGAAT+AGG - Chr5:87291245-87291264 MsG0580028836.01.T01:CDS 25.0%
!! TATAATAAGCTTTTCCTTGA+AGG - Chr5:87292700-87292719 MsG0580028836.01.T01:CDS 25.0%
!! TATCATGTCTTCTTTTATGA+AGG + Chr5:87291438-87291457 None:intergenic 25.0%
!! TCAAAAGTAATTTTTCATGC+GGG + Chr5:87291303-87291322 None:intergenic 25.0%
!!! ATGAATTGGTTTTGATCTTT+TGG + Chr5:87290718-87290737 None:intergenic 25.0%
!!! CAAAAGAGTATTCTTACAAT+TGG + Chr5:87291237-87291256 None:intergenic 25.0%
AAAAGAGTTCTTGTATTCTG+TGG + Chr5:87290578-87290597 None:intergenic 30.0%
AAAGTGAACTTAGTATGCTA+AGG + Chr5:87292135-87292154 None:intergenic 30.0%
AACCATTGTGTTGTATTTCA+TGG - Chr5:87292872-87292891 MsG0580028836.01.T01:CDS 30.0%
AAGTGCATTGCATTGTTAAA+AGG + Chr5:87290373-87290392 None:intergenic 30.0%
ACATATCAACTACTTTCTCT+AGG - Chr5:87293524-87293543 MsG0580028836.01.T01:CDS 30.0%
ATGTCTCATTTCATTGGAAA+TGG - Chr5:87292009-87292028 MsG0580028836.01.T01:CDS 30.0%
ATTGAATGAGATTCTCTACA+CGG + Chr5:87291808-87291827 None:intergenic 30.0%
CAATGCTTTAATCCAAATAC+TGG - Chr5:87291824-87291843 MsG0580028836.01.T01:CDS 30.0%
CTATGTTAAGAAGGTAATCA+AGG - Chr5:87290900-87290919 MsG0580028836.01.T01:CDS 30.0%
CTTGATTACCTTCTTAACAT+AGG + Chr5:87290902-87290921 None:intergenic 30.0%
CTTTAATCCAAATACTGGAT+GGG - Chr5:87291829-87291848 MsG0580028836.01.T01:CDS 30.0%
GATCATGATACATATGGTTT+AGG - Chr5:87291704-87291723 MsG0580028836.01.T01:CDS 30.0%
GCTGATATCAAACTTATATG+GGG - Chr5:87291533-87291552 MsG0580028836.01.T01:CDS 30.0%
TCACTTGATCATGATACATA+TGG - Chr5:87291698-87291717 MsG0580028836.01.T01:CDS 30.0%
TCATAAACCTGAGCATTATA+TGG + Chr5:87293016-87293035 None:intergenic 30.0%
TCGATTACTAAAAATTGCAC+TGG + Chr5:87292307-87292326 None:intergenic 30.0%
TGAATATTGAAGATGACTTG+TGG - Chr5:87291088-87291107 MsG0580028836.01.T01:CDS 30.0%
TGCAAAATTGCAGTATTAGT+TGG + Chr5:87291644-87291663 None:intergenic 30.0%
TTCAAGTCATTTAAGCTTTC+AGG + Chr5:87290853-87290872 None:intergenic 30.0%
TTCCATGAAATACAACACAA+TGG + Chr5:87292877-87292896 None:intergenic 30.0%
! AACTAATACTGCAATTTTGC+AGG - Chr5:87291643-87291662 MsG0580028836.01.T01:CDS 30.0%
! TTAGTAAAAAGCAAGGTACT+CGG - Chr5:87292427-87292446 MsG0580028836.01.T01:CDS 30.0%
! TTTTGTACCTCTATTGTTTG+AGG - Chr5:87290594-87290613 MsG0580028836.01.T01:intron 30.0%
! TTTTGTGCAAATACTGTCTT+TGG - Chr5:87293290-87293309 MsG0580028836.01.T01:intron 30.0%
!! CATTTGTTGTCATGTTCATA+AGG + Chr5:87291146-87291165 None:intergenic 30.0%
!!! TGCTTTTTTGTATTTCAGAG+TGG - Chr5:87291368-87291387 MsG0580028836.01.T01:CDS 30.0%
AACAAATGTGGCTATGACTA+GGG - Chr5:87293201-87293220 MsG0580028836.01.T01:intron 35.0%
AACAATTCCATTACAGCTGT+CGG - Chr5:87292357-87292376 MsG0580028836.01.T01:CDS 35.0%
AACCAGTAATGAAAGTGAAG+AGG - Chr5:87289892-87289911 MsG0580028836.01.T01:CDS 35.0%
ACAAGGAAGAAAGTTAGCAT+AGG - Chr5:87292980-87292999 MsG0580028836.01.T01:intron 35.0%
ACAGAACATTCTTAATAGCC+CGG + Chr5:87293429-87293448 None:intergenic 35.0%
AGTATTCTTACAATTGGACG+CGG + Chr5:87291231-87291250 None:intergenic 35.0%
ATACTAACGCTGAAGATTTC+TGG + Chr5:87292900-87292919 None:intergenic 35.0%
ATAGCAGACCAATGTGAATT+TGG - Chr5:87292526-87292545 MsG0580028836.01.T01:CDS 35.0%
ATATCTACCGTGAGATCTAA+TGG - Chr5:87293142-87293161 MsG0580028836.01.T01:intron 35.0%
ATCCTCTTCACTTTCATTAC+TGG + Chr5:87289897-87289916 None:intergenic 35.0%
ATGAAATTAAGTCCTCATCC+AGG - Chr5:87291758-87291777 MsG0580028836.01.T01:CDS 35.0%
CATATCTCCATATAATGCTC+AGG - Chr5:87293006-87293025 MsG0580028836.01.T01:intron 35.0%
CTCTACTCAAGTTAAAAACC+AGG - Chr5:87291603-87291622 MsG0580028836.01.T01:CDS 35.0%
GAAAAAACCTATGTTCTTGC+AGG - Chr5:87290522-87290541 MsG0580028836.01.T01:intron 35.0%
GAAACTAATTGATCCAGCAA+AGG - Chr5:87292276-87292295 MsG0580028836.01.T01:CDS 35.0%
GATCTTTATTGAGACTGGTA+TGG + Chr5:87290052-87290071 None:intergenic 35.0%
GCTTTAATCCAAATACTGGA+TGG - Chr5:87291828-87291847 MsG0580028836.01.T01:CDS 35.0%
GGAAATTATAAACCTGTGTC+AGG - Chr5:87290799-87290818 MsG0580028836.01.T01:CDS 35.0%
GTAAATGTTCGTTCTGTTGA+TGG - Chr5:87293088-87293107 MsG0580028836.01.T01:intron 35.0%
TAATCAACAGTGACTCTGTT+TGG - Chr5:87293335-87293354 MsG0580028836.01.T01:intron 35.0%
TACAGTTCCATCATGACATA+TGG - Chr5:87290737-87290756 MsG0580028836.01.T01:CDS 35.0%
TACTTCGTCCAAATTCACAT+TGG + Chr5:87292537-87292556 None:intergenic 35.0%
TAGTCGATCTTTATTGAGAC+TGG + Chr5:87290057-87290076 None:intergenic 35.0%
TATCGAGAAAGACATTGACA+AGG + Chr5:87291784-87291803 None:intergenic 35.0%
TCAGGTTTATGAAATTCAGG+AGG - Chr5:87293024-87293043 MsG0580028836.01.T01:intron 35.0%
TCATTGCTTTCACACACATT+AGG - Chr5:87290827-87290846 MsG0580028836.01.T01:CDS 35.0%
TCCAATGAAATGAGACATGT+TGG + Chr5:87292007-87292026 None:intergenic 35.0%
TCCTGCATTAGTAAAAAGCA+AGG - Chr5:87292420-87292439 MsG0580028836.01.T01:CDS 35.0%
TGCTCAGGTTTATGAAATTC+AGG - Chr5:87293021-87293040 MsG0580028836.01.T01:intron 35.0%
TGCTGAAGAGGACAAAAAAT+TGG - Chr5:87293402-87293421 MsG0580028836.01.T01:intron 35.0%
TGTGTTTCCTCAAACAATAG+AGG + Chr5:87290604-87290623 None:intergenic 35.0%
TTAAGAAGGTAATCAAGGCA+AGG - Chr5:87290905-87290924 MsG0580028836.01.T01:intron 35.0%
TTATGAACCTGCAAGAACAT+AGG + Chr5:87290532-87290551 None:intergenic 35.0%
TTCAACATCCATCATGCAAT+TGG + Chr5:87291022-87291041 None:intergenic 35.0%
TTGAGTCACCATTCAAGAAA+CGG - Chr5:87293473-87293492 MsG0580028836.01.T01:CDS 35.0%
! AAGAGTACATTTCTCCTTCA+AGG + Chr5:87292717-87292736 None:intergenic 35.0%
! CATGATGGAACTGTATGAAT+TGG + Chr5:87290732-87290751 None:intergenic 35.0%
! TAATACTGCAATTTTGCAGG+TGG - Chr5:87291646-87291665 MsG0580028836.01.T01:CDS 35.0%
! TACAATGTGCACTTGTTTCT+TGG - Chr5:87290013-87290032 MsG0580028836.01.T01:CDS 35.0%
! TGCTATTTGGAAATGGTAAG+AGG - Chr5:87291735-87291754 MsG0580028836.01.T01:CDS 35.0%
! TTAGGTGACATTGTGCTATT+TGG - Chr5:87291722-87291741 MsG0580028836.01.T01:CDS 35.0%
!! GACAGTACTGAGATTTTATC+AGG + Chr5:87290940-87290959 None:intergenic 35.0%
!! GACATTGTGCTATTTGGAAA+TGG - Chr5:87291728-87291747 MsG0580028836.01.T01:CDS 35.0%
!! TTCAAGCTCTTGATTTGCTA+AGG - Chr5:87292044-87292063 MsG0580028836.01.T01:intron 35.0%
!!! ACCTTGCTTTTTACTAATGC+AGG + Chr5:87292424-87292443 None:intergenic 35.0%
AAGAGGACAAAAAATTGGCC+CGG - Chr5:87293407-87293426 MsG0580028836.01.T01:intron 40.0%
AAGGTAATCAAGGCAAGGAA+TGG - Chr5:87290910-87290929 MsG0580028836.01.T01:intron 40.0%
AAGGTCTCTTGGAAATTCCT+TGG - Chr5:87292063-87292082 MsG0580028836.01.T01:intron 40.0%
AAGTCTGAAGAACATGGTTC+AGG - Chr5:87292789-87292808 MsG0580028836.01.T01:CDS 40.0%
ACAATTCCATTACAGCTGTC+GGG - Chr5:87292358-87292377 MsG0580028836.01.T01:CDS 40.0%
ACCAGTACCATTAGATCTCA+CGG + Chr5:87293152-87293171 None:intergenic 40.0%
AGCTTGAAACAGCATCTTCT+TGG + Chr5:87291487-87291506 None:intergenic 40.0%
AGGAAATTGAGCAGTACACT+CGG - Chr5:87293044-87293063 MsG0580028836.01.T01:intron 40.0%
AGGTCTCTTGGAAATTCCTT+GGG - Chr5:87292064-87292083 MsG0580028836.01.T01:intron 40.0%
ATAGCTTTCTTCCCTGACAA+TGG + Chr5:87292683-87292702 None:intergenic 40.0%
ATGAAGGTAGATCGACTATC+TGG + Chr5:87291422-87291441 None:intergenic 40.0%
ATTCTTCCAGTCGTTGAATC+TGG + Chr5:87293453-87293472 None:intergenic 40.0%
CAGAACATTCTTAATAGCCC+GGG + Chr5:87293428-87293447 None:intergenic 40.0%
CATATGCGAGACTACATAGA+AGG + Chr5:87290117-87290136 None:intergenic 40.0%
CCTTCTTAACATAGGCGATA+CGG + Chr5:87290894-87290913 None:intergenic 40.0%
GAACAAATGTGGCTATGACT+AGG - Chr5:87293200-87293219 MsG0580028836.01.T01:intron 40.0%
GCCAACATGTCTCATTTCAT+TGG - Chr5:87292003-87292022 MsG0580028836.01.T01:CDS 40.0%
GCTAAGGGTAAAGAGCAATT+TGG - Chr5:87292757-87292776 MsG0580028836.01.T01:CDS 40.0%
GCTATCATCCAATTGCATGA+TGG - Chr5:87291011-87291030 MsG0580028836.01.T01:CDS 40.0%
GCTTGAAACAGCATCTTCTT+GGG + Chr5:87291486-87291505 None:intergenic 40.0%
GGTAAAGAGCAATTTGGTCA+TGG - Chr5:87292763-87292782 MsG0580028836.01.T01:CDS 40.0%
GTCATGCAAATGCATGAAGA+TGG - Chr5:87290957-87290976 MsG0580028836.01.T01:intron 40.0%
TAGCTTTCTTCCCTGACAAT+GGG + Chr5:87292682-87292701 None:intergenic 40.0%
TCTTCAGCCATATGTCATGA+TGG + Chr5:87290747-87290766 None:intergenic 40.0%
TGGACAAAGTCTGAAGAACA+TGG - Chr5:87292783-87292802 MsG0580028836.01.T01:CDS 40.0%
TTAACATAGGCGATACGGTA+GGG + Chr5:87290889-87290908 None:intergenic 40.0%
TTAGTCTCCCATCCAGTATT+TGG + Chr5:87291839-87291858 None:intergenic 40.0%
TTCCTTGTCTTCATGAACAC+TGG + Chr5:87292968-87292987 None:intergenic 40.0%
TTGTTTCCACAATGCTGAAG+AGG - Chr5:87293390-87293409 MsG0580028836.01.T01:intron 40.0%
TTTGTTCAGAACATCCTCGA+GGG + Chr5:87289951-87289970 None:intergenic 40.0%
! AGATGACTTGTGGAAGAACA+AGG - Chr5:87291098-87291117 MsG0580028836.01.T01:CDS 40.0%
! CAATTTTGCAGGTGGCAATT+CGG - Chr5:87291654-87291673 MsG0580028836.01.T01:CDS 40.0%
! CATGTGTGAGGTTGATTTCA+GGG + Chr5:87291184-87291203 None:intergenic 40.0%
! TCATGTGTGAGGTTGATTTC+AGG + Chr5:87291185-87291204 None:intergenic 40.0%
! TCGGTTGCATAGGTTAGTTA+TGG - Chr5:87291673-87291692 MsG0580028836.01.T01:CDS 40.0%
! TTTTGTCCTCTTCAGCATTG+TGG + Chr5:87293399-87293418 None:intergenic 40.0%
! TTTTGTTCAGAACATCCTCG+AGG + Chr5:87289952-87289971 None:intergenic 40.0%
!! CTTGATTTGCTAAGGTCTCT+TGG - Chr5:87292052-87292071 MsG0580028836.01.T01:intron 40.0%
!! TCTAATGGTACTGGTGATGT+TGG - Chr5:87293157-87293176 MsG0580028836.01.T01:intron 40.0%
!!! CGTTCTGTTGATGGTTTTCA+AGG - Chr5:87293097-87293116 MsG0580028836.01.T01:intron 40.0%
!!! TCTGTTGATGGTTTTCAAGG+TGG - Chr5:87293100-87293119 MsG0580028836.01.T01:intron 40.0%
AAACTTATATGGGGACCACC+AGG - Chr5:87291542-87291561 MsG0580028836.01.T01:CDS 45.0%
AACTACTTTCTCTAGGCGAG+TGG - Chr5:87293531-87293550 MsG0580028836.01.T01:CDS 45.0%
AACTTATATGGGGACCACCA+GGG - Chr5:87291543-87291562 MsG0580028836.01.T01:CDS 45.0%
ACCGTGAGATCTAATGGTAC+TGG - Chr5:87293148-87293167 MsG0580028836.01.T01:intron 45.0%
AGAAAGACATTGACAAGGCC+TGG + Chr5:87291779-87291798 None:intergenic 45.0%
AGAGGACAAAAAATTGGCCC+GGG - Chr5:87293408-87293427 MsG0580028836.01.T01:intron 45.0%
ATCTGATGCTCCCATTGTCA+GGG - Chr5:87292669-87292688 MsG0580028836.01.T01:CDS 45.0%
CACGGGAATAAGCTAATGGA+AGG + Chr5:87292625-87292644 None:intergenic 45.0%
CATCATAGAACTCTTCGCAC+GGG + Chr5:87292642-87292661 None:intergenic 45.0%
CATCTCCGATTAGGATGCAA+CGG + Chr5:87292390-87292409 None:intergenic 45.0%
CCATCATAGAACTCTTCGCA+CGG + Chr5:87292643-87292662 None:intergenic 45.0%
CCATTCAAGAAACGGCGTTT+AGG - Chr5:87293481-87293500 MsG0580028836.01.T01:CDS 45.0%
CCGTATCGCCTATGTTAAGA+AGG - Chr5:87290891-87290910 MsG0580028836.01.T01:CDS 45.0%
CCTAAACGCCGTTTCTTGAA+TGG + Chr5:87293484-87293503 None:intergenic 45.0%
CTTAACATAGGCGATACGGT+AGG + Chr5:87290890-87290909 None:intergenic 45.0%
GACAGGGAAAACAAAGACAG+TGG - Chr5:87291565-87291584 MsG0580028836.01.T01:CDS 45.0%
GCAATTGGATGATAGCTCCT+TGG + Chr5:87291007-87291026 None:intergenic 45.0%
GGAAATTGAGCAGTACACTC+GGG - Chr5:87293045-87293064 MsG0580028836.01.T01:intron 45.0%
GGAGTTCAGCAACTCTATCA+TGG + Chr5:87291870-87291889 None:intergenic 45.0%
GGTCTCTTGGAAATTCCTTG+GGG - Chr5:87292065-87292084 MsG0580028836.01.T01:intron 45.0%
GTTGTCTCTCATCTCCGATT+AGG + Chr5:87292399-87292418 None:intergenic 45.0%
TAACATAGGCGATACGGTAG+GGG + Chr5:87290888-87290907 None:intergenic 45.0%
TATCTGATGCTCCCATTGTC+AGG - Chr5:87292668-87292687 MsG0580028836.01.T01:CDS 45.0%
TCAAGAAACGGCGTTTAGGA+GGG - Chr5:87293485-87293504 MsG0580028836.01.T01:CDS 45.0%
TCGAGGATGTTGTACTCTCA+TGG - Chr5:87289924-87289943 MsG0580028836.01.T01:CDS 45.0%
TCTGTTCCAGATTCAACGAC+TGG - Chr5:87293444-87293463 MsG0580028836.01.T01:intron 45.0%
TGCCAGTGTTCATGAAGACA+AGG - Chr5:87292963-87292982 MsG0580028836.01.T01:intron 45.0%
TGTTGGCATGTGTGTGTGTA+AGG + Chr5:87291990-87292009 None:intergenic 45.0%
TTCAAGAAACGGCGTTTAGG+AGG - Chr5:87293484-87293503 MsG0580028836.01.T01:CDS 45.0%
TTCGCACGGGAATAAGCTAA+TGG + Chr5:87292629-87292648 None:intergenic 45.0%
! AGATGACTTGCAGAACACCA+AGG - Chr5:87290987-87291006 MsG0580028836.01.T01:intron 45.0%
! ATCGACTATCTGGTTCAGAC+AGG + Chr5:87291412-87291431 None:intergenic 45.0%
!! TGATGGTTTTCAAGGTGGTG+AGG - Chr5:87293105-87293124 MsG0580028836.01.T01:intron 45.0%
ACATTGACAAGGCCTGGATG+AGG + Chr5:87291773-87291792 None:intergenic 50.0%
ACGGCGTTTAGGAGGGAAAA+TGG - Chr5:87293492-87293511 MsG0580028836.01.T01:CDS 50.0%
AGGTGGCAATTCGGTTGCAT+AGG - Chr5:87291663-87291682 MsG0580028836.01.T01:CDS 50.0%
ATGTGGCTATGACTAGGGCT+AGG - Chr5:87293206-87293225 MsG0580028836.01.T01:intron 50.0%
CCGTGCGAAGAGTTCTATGA+TGG - Chr5:87292640-87292659 MsG0580028836.01.T01:CDS 50.0%
CGGCGTTTAGGAGGGAAAAT+GGG - Chr5:87293493-87293512 MsG0580028836.01.T01:CDS 50.0%
CTCCACCGTTGCATCCTAAT+CGG - Chr5:87292382-87292401 MsG0580028836.01.T01:CDS 50.0%
GCAATGAGATCTCCTGACAC+AGG + Chr5:87290814-87290833 None:intergenic 50.0%
TGGAGCACATGTCAATGTCC+TGG + Chr5:87291624-87291643 None:intergenic 50.0%
! GTGGCTGACTTAAACGTCTC+TGG + Chr5:87290559-87290578 None:intergenic 50.0%
! TGAAGAGGATGTTCGACTCG+AGG - Chr5:87289907-87289926 MsG0580028836.01.T01:CDS 50.0%
!! CTTGAATTTGGCTTGCCCCA+AGG + Chr5:87292083-87292102 None:intergenic 50.0%
!! TTTGTTTTCCCTGTCCCTGG+TGG + Chr5:87291560-87291579 None:intergenic 50.0%
!!! GTCTTTGTTTTCCCTGTCCC+TGG + Chr5:87291563-87291582 None:intergenic 50.0%
CTCCGATTAGGATGCAACGG+TGG + Chr5:87292387-87292406 None:intergenic 55.0%
TGGAGACCCGACAGCTGTAA+TGG + Chr5:87292367-87292386 None:intergenic 55.0%
TGTACTCTCATGGACCCTCG+AGG - Chr5:87289934-87289953 MsG0580028836.01.T01:CDS 55.0%
! AGGCGATACGGTAGGGGTTT+TGG + Chr5:87290882-87290901 None:intergenic 55.0%
!! TGCACTGGCTTCACCTTTGC+TGG + Chr5:87292292-87292311 None:intergenic 55.0%
ATATGGGGACCACCAGGGAC+AGG - Chr5:87291548-87291567 MsG0580028836.01.T01:CDS 60.0%
TATGGGGACCACCAGGGACA+GGG - Chr5:87291549-87291568 MsG0580028836.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 87289884 87293564 87289884 ID=MsG0580028836.01;Name=MsG0580028836.01
Chr5 mRNA 87289884 87293564 87289884 ID=MsG0580028836.01.T01;Parent=MsG0580028836.01;Name=MsG0580028836.01.T01;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|1|1|5|0|925
Chr5 exon 87293460 87293564 87293460 ID=MsG0580028836.01.T01:exon:44719;Parent=MsG0580028836.01.T01
Chr5 exon 87292209 87292904 87292209 ID=MsG0580028836.01.T01:exon:44718;Parent=MsG0580028836.01.T01
Chr5 exon 87291007 87292062 87291007 ID=MsG0580028836.01.T01:exon:44717;Parent=MsG0580028836.01.T01
Chr5 exon 87290598 87290922 87290598 ID=MsG0580028836.01.T01:exon:44716;Parent=MsG0580028836.01.T01
Chr5 exon 87289884 87290479 87289884 ID=MsG0580028836.01.T01:exon:44715;Parent=MsG0580028836.01.T01
Chr5 CDS 87293460 87293564 87293460 ID=MsG0580028836.01.T01:cds;Parent=MsG0580028836.01.T01
Chr5 CDS 87292209 87292904 87292209 ID=MsG0580028836.01.T01:cds;Parent=MsG0580028836.01.T01
Chr5 CDS 87291007 87292062 87291007 ID=MsG0580028836.01.T01:cds;Parent=MsG0580028836.01.T01
Chr5 CDS 87290598 87290922 87290598 ID=MsG0580028836.01.T01:cds;Parent=MsG0580028836.01.T01
Chr5 CDS 87289884 87290479 87289884 ID=MsG0580028836.01.T01:cds;Parent=MsG0580028836.01.T01
Gene Sequence

>MsG0580028836.01.T01

ATGGAAACAACCAGTAATGAAAGTGAAGAGGATGTTCGACTCGAGGATGTTGTACTCTCATGGACCCTCGAGGATGTTCTGAACAAAAAATTTTACAAAGACAAGGTTCATAAGATTCCAGAGACGTTTAAGTCAGCCACAGAATACAAGAACTCTTTTGTACCTCTATTGTTTGAGGAAACACACACTGATTTATCTTCAAGCTTGTTTGCTGTTTCTCAAGCTCCTTTTTGTGAGATCAATAATGTTCAAAAAACTGCATGGAAACTTTCAATTCCAAAAGATCAAAACCAATTCATACAGTTCCATCATGACATATGGCTGAAGAGTACAACTGAATCTGATGAAGTTGAAAATATTGGAAATTATAAACCTGTGTCAGGAGATCTCATTGCTTTCACACACATTAGGCCTGAAAGCTTAAATGACTTGAACACACACCAAAACCCCTACCGTATCGCCTATGTTAAGAAGGTAATCAAGGCAAGGAATGGAATTCCTGATAAAATCTCAGTACTGTCATGCAAATGCATGAAGATGGATATCAAAGATGACTTGCAGAACACCAAGGAGCTATCATCCAATTGCATGATGGATGTTGAAGACGACTTGTGTAACAACAAAGAGCTATCATCCGAATGCATGAAGATGAATATTGAAGATGACTTGTGGAAGAACAAGGAGTTGAAACTGTATGCAGTTTACCTTATGAACATGACAACAAATGTTCGTATTTGCAATGCCCTGAAATCAACCTCACACATGAATATAATTAAAACAGTGTTGGGACCGCGTCCAATTAGTGGAGAAAACTGTCAACTTTGCCTGTCTGAACCAGATAGTCGATCTACCTTCATAAAAGAAGACATGATAATTCGTTCTCAGAATCTAAATGAATCCCAAGAAGATGCTGTTTCAAGCTGTGTTAGCATGATGAATTGCAATCATGCTGATATCAAACTTATATGGGGACCACCAGGGACAGGGAAAACAAAGACAGTGGCATGCTTGCTATTTTCTCTACTCAAGTTAAAAACCAGGACATTGACATGTGCTCCAACTAATACTGCAATTTTGCAGGTGGCAATTCGGTTGCATAGGTTAGTTATGGATTCACTTGATCATGATACATATGGTTTAGGTGACATTGTGCTATTTGGAAATGGTAAGAGGATGAAATTAAGTCCTCATCCAGGCCTTGTCAATGTCTTTCTCGATAACCGTGTAGAGAATCTCATTCAATGCTTTAATCCAAATACTGGATGGGAGACTAACTTGCGATCCATGATAGAGTTGCTGAACTCCATGAAGAAATTTGCTAACAAAAATGTGACTAGTAAAGTTTTTGAATACAAGAAGATATTTGGTCAACAAAAAGAGAAGCTCGAGTTCTTGATGCAAACCTTACACACACACATGCCAACATGTCTCATTTCATTGGAAATGGTTGAAAAAATGCTTCAAGCTCTTGATTTGCTAAGGTCTCTTGGAAATTCCTTGGGGCAAGCCAAATTCAAGAAAAATAACTTTGATTGTATAGATGAGTGCCTTAGCATACTAAGTTCACTTTCTGAGACTGTTTCCCTTCCTAAATTTAACATTGACATGAGAGGTGCTATCAATAGAGTTCAAGTAGAAAACTTTTGCTTGTCGAATGCTTGTCTGATTATGTGCACTGCATCAAGTTCTATGAAACTAATTGATCCAGCAAAGGTGAAGCCAGTGCAATTTTTAGTAATCGATGAAGCTGCACAGCTCAAAGAATGTGAATCAACAATTCCATTACAGCTGTCGGGTCTCCACCGTTGCATCCTAATCGGAGATGAGAGACAACTTCCTGCATTAGTAAAAAGCAAGATAGCAGACCAATGTGAATTTGGACGAAGTATGTTTGAAAGAATTGTAATGTTGGGATATGAAAGAAAAATGCTTAATGTTCAGTATAGAATGCATCCTTCCATTAGCTTATTCCCGTGCGAAGAGTTCTATGATGGAAAGCTATCTGATGCTCCCATTGTCAGGGAAGAAAGCTATAATAAGCTTTTCCTTGAAGGAGAAATGTACTCTTCCTATTCTTTTATTAACATAGCTAAGGGTAAAGAGCAATTTGGTCATGGACAAAGTCTGAAGAACATGGTTCAGGTTGCTGTTATTTCTGAGATAATTAAAAGTCTTTATGAAGTGTTCATGAAGACAAGGAAGAAAGTTAGCATAGGAATCATATCTCCATATAATGCTCAGGTTTATGAAATTCAGGAGGAAATTGAGCAGTACACTCGGGTTGCTAATTCTAAGTTCTCTGTAAATGTTCGTTCTGTTGATGGTTTTCAAGGTGGTGAGGAAGATATTATAATAATATCTACCGTGAGATCTAATGGTACTGGTGATGTTGGTTTTCTTTCAAATAGACAAAGAACAAATGTGGCTATGACTAGGGCTAGGTATGACGTATATGATGTTCAATTTGTTATGTTGTTTCTATCTTTACTGAATACTGAGTTCATTTTGTGCAAATACTGTCTTTGGATATTAGGAAATGCATCTACTTTAATCAACAGTGACTCTGTTTGGAGAAATGTAGTTATTGATGCTAAGAATAGGGATTGTTTCCACAATGCTGAAGAGGACAAAAAATTGGCCCGGGCTATTAAGAATGTTCTGTTCCAGATTCAACGACTGGAAGAATTTGAGTCACCATTCAAGAAACGGCGTTTAGGAGGGAAAATGGGAAATCATAACATATCAACTACTTTCTCTAGGCGAGTGGCACCAAATTAA
Protein sequence

>MsG0580028836.01.T01

METTSNESEEDVRLEDVVLSWTLEDVLNKKFYKDKVHKIPETFKSATEYKNSFVPLLFEETHTDLSSSLFAVSQAPFCEINNVQKTAWKLSIPKDQNQFIQFHHDIWLKSTTESDEVENIGNYKPVSGDLIAFTHIRPESLNDLNTHQNPYRIAYVKKVIKARNGIPDKISVLSCKCMKMDIKDDLQNTKELSSNCMMDVEDDLCNNKELSSECMKMNIEDDLWKNKELKLYAVYLMNMTTNVRICNALKSTSHMNIIKTVLGPRPISGENCQLCLSEPDSRSTFIKEDMIIRSQNLNESQEDAVSSCVSMMNCNHADIKLIWGPPGTGKTKTVACLLFSLLKLKTRTLTCAPTNTAILQVAIRLHRLVMDSLDHDTYGLGDIVLFGNGKRMKLSPHPGLVNVFLDNRVENLIQCFNPNTGWETNLRSMIELLNSMKKFANKNVTSKVFEYKKIFGQQKEKLEFLMQTLHTHMPTCLISLEMVEKMLQALDLLRSLGNSLGQAKFKKNNFDCIDECLSILSSLSETVSLPKFNIDMRGAINRVQVENFCLSNACLIMCTASSSMKLIDPAKVKPVQFLVIDEAAQLKECESTIPLQLSGLHRCILIGDERQLPALVKSKIADQCEFGRSMFERIVMLGYERKMLNVQYRMHPSISLFPCEEFYDGKLSDAPIVREESYNKLFLEGEMYSSYSFINIAKGKEQFGHGQSLKNMVQVAVISEIIKSLYEVFMKTRKKVSIGIISPYNAQVYEIQEEIEQYTRVANSKFSVNVRSVDGFQGGEEDIIIISTVRSNGTGDVGFLSNRQRTNVAMTRARYDVYDVQFVMLFLSLLNTEFILCKYCLWILGNASTLINSDSVWRNVVIDAKNRDCFHNAEEDKKLARAIKNVLFQIQRLEEFESPFKKRRLGGKMGNHNISTTFSRRVAPN*