AlfalfaGEDB | MsG0580029674.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029674.01

KEGG: -
GO: GO:0016747
PFAM: PF02458

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029674.01.T01	XP_003617366.1	74.251	167	12	1	1	136	12	178	2.24E-74	244
MsG0580029674.01.T01	XP_003617366.1	73.377	154	40	1	106	259	319	471	6.39E-70	233

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029674.01.T01	A1XWY7	50.299	167	50	3	1	135	10	175	1.51E-36	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029674.01.T01	G7K3A0	74.251	167	12	1	1	136	12	178	1.07e-74	244

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049046.01	MsG0580029674.01	0.803091	4.113662e-49	2.048735e-46
MsG0180001915.01	MsG0580029674.01	0.800746	1.247170e-48	5.852622e-46
MsG0280009232.01	MsG0580029674.01	0.827137	1.847014e-54	1.767469e-51
MsG0380016299.01	MsG0580029674.01	0.800099	1.689078e-48	7.797429e-46
MsG0480019146.01	MsG0580029674.01	0.813122	3.002909e-51	1.944081e-48
MsG0480020904.01	MsG0580029674.01	0.822814	1.936504e-53	1.638306e-50
MsG0580024839.01	MsG0580029674.01	0.803463	3.445443e-49	1.732522e-46
MsG0580029674.01	MsG0580029676.01	0.848233	6.982175e-60	1.272823e-56
MsG0580029674.01	MsG0780036839.01	0.802879	4.549849e-49	2.253916e-46
MsG0580029674.01	MsG0780039355.01	0.813566	2.399539e-51	1.572440e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029674.01.T01	MTR_5g090810	74.251	167	12	1	1	136	12	178	2.72e-78	244
MsG0580029674.01.T01	MTR_5g090810	73.377	154	40	1	106	259	319	471	7.74e-74	233
MsG0580029674.01.T01	MTR_5g090830	74.251	167	12	1	1	136	12	178	4.61e-78	243
MsG0580029674.01.T01	MTR_5g090830	72.727	154	41	1	106	259	319	471	7.82e-74	233
MsG0580029674.01.T01	MTR_5g090880	72.868	129	35	0	131	259	345	473	8.61e-63	204
MsG0580029674.01.T01	MTR_5g090880	64.072	167	28	2	1	135	12	178	9.15e-57	188
MsG0580029674.01.T01	MTR_3g450710	62.500	168	30	2	1	137	13	178	2.29e-53	179
MsG0580029674.01.T01	MTR_3g450710	69.369	111	32	1	147	257	360	468	2.60e-48	166
MsG0580029674.01.T01	MTR_3g450690	67.568	111	34	1	147	257	364	472	1.03e-48	167
MsG0580029674.01.T01	MTR_3g450690	56.977	172	38	2	1	136	13	184	7.53e-47	162

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029674.01.T01	AT1G78990	38.991	218	116	6	49	257	244	453	5.72e-40	144
MsG0580029674.01.T01	AT1G78990	49.697	165	49	3	2	135	16	177	1.59e-34	129
MsG0580029674.01.T01	AT1G32910	63.107	103	34	2	157	257	358	458	6.93e-40	144
MsG0580029674.01.T01	AT1G32910	53.333	165	37	4	4	135	18	175	4.81e-37	136
MsG0580029674.01.T01	AT5G16410	50.000	134	61	3	128	257	348	479	5.55e-37	136
MsG0580029674.01.T01	AT5G16410	45.087	173	53	5	2	138	39	205	2.63e-36	134

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Find 83 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTTCCTTGTATCAT+GGG	0.539896	5:-100648030	MsG0580029674.01.T01:CDS
AAATGATAAGATCCAAACAC+AGG	0.657847	5:+100647295	None:intergenic
AACACACCGACATCAACAGG+GGG	0.687180	5:+100648714	None:intergenic
AACATCCCACAATGCTATGG+TGG	0.566613	5:+100648655	None:intergenic
AAGAACACACCGACATCAAC+AGG	0.337593	5:+100648711	None:intergenic
AAGGAACATGTTTGCAGAAT+AGG	0.360809	5:+100648040	None:intergenic
AATAAGCCTATAATTACTAC+TGG	0.553926	5:-100648681	MsG0580029674.01.T01:CDS
AATAGGCATCCGCTATACGA+TGG	0.674136	5:+100648057	None:intergenic
AATCCAGATGAAACTGTAGA+AGG	0.442984	5:-100648475	MsG0580029674.01.T01:intron
ACAAAGGTTTCCAGAGTCGA+AGG	0.585762	5:-100647338	MsG0580029674.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGTTCCTTGTATCAT+GGG	-	Chr5:100647897-100647916	MsG0580029674.01.T01:intron	30.0%
AAATGATAAGATCCAAACAC+AGG	+	Chr5:100648635-100648654	None:intergenic	30.0%
ACATACATGTCATAAAGTGA+AGG	+	Chr5:100648023-100648042	None:intergenic	30.0%
AGTATATGCGACTTATTATG+GGG	+	Chr5:100648106-100648125	None:intergenic	30.0%
ATTAGTACTTGTGTTTAGAC+AGG	-	Chr5:100647624-100647643	MsG0580029674.01.T01:intron	30.0%
CAGTAAAATGATAAGACCAA+TGG	+	Chr5:100647660-100647679	None:intergenic	30.0%
TTTGTTAATCTACCACCATA+GGG	+	Chr5:100648378-100648397	None:intergenic	30.0%
AAGGAACATGTTTGCAGAAT+AGG	+	Chr5:100647890-100647909	None:intergenic	35.0%
AATCCAGATGAAACTGTAGA+AGG	-	Chr5:100647452-100647471	MsG0580029674.01.T01:CDS	35.0%
AATCTATACCATATGCAAGG+TGG	+	Chr5:100647769-100647788	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	100647132	100648817	100647132	ID=MsG0580029674.01;Name=MsG0580029674.01
Chr5	mRNA	100647132	100648817	100647132	ID=MsG0580029674.01.T01;Parent=MsG0580029674.01;Name=MsG0580029674.01.T01;_AED=0.26;_eAED=0.26;_QI=0\|0.33\|0\|1\|1\|1\|4\|0\|259
Chr5	exon	100648583	100648817	100648583	ID=MsG0580029674.01.T01:exon:36577;Parent=MsG0580029674.01.T01
Chr5	exon	100648432	100648490	100648432	ID=MsG0580029674.01.T01:exon:36576;Parent=MsG0580029674.01.T01
Chr5	exon	100648003	100648126	100648003	ID=MsG0580029674.01.T01:exon:36575;Parent=MsG0580029674.01.T01
Chr5	exon	100647132	100647493	100647132	ID=MsG0580029674.01.T01:exon:36574;Parent=MsG0580029674.01.T01
Chr5	CDS	100648583	100648817	100648583	ID=MsG0580029674.01.T01:cds;Parent=MsG0580029674.01.T01
Chr5	CDS	100648432	100648490	100648432	ID=MsG0580029674.01.T01:cds;Parent=MsG0580029674.01.T01
Chr5	CDS	100648003	100648126	100648003	ID=MsG0580029674.01.T01:cds;Parent=MsG0580029674.01.T01
Chr5	CDS	100647132	100647493	100647132	ID=MsG0580029674.01.T01:cds;Parent=MsG0580029674.01.T01

Gene Sequence

>MsG0580029674.01.T01

ATGACCAACGAGGAAATAGTGGCAGCTGCGCTACCAATGCAAGAGCATTGGCTTCCACTATCAAACCTTGATTTAATTCTTCCCCCTGTTGATGTCGGTGTGTTCTTTTGCTACAATAAGCCTATAATTACTACTGGCACCCACCATAGCATTGTGGGATGTTTGAAAAATTCTTTAGCTAAGGCTCTTGTTTCTTATTATGCCTTTGCTGGTGAAGTCGTTGCTAATTCCATGGATGAAACTGTAGAAGGGAAGCTTGTTCCAAAGAAGAAACATGGTGTGCTTGCTGTTCAGACAACATGGATGAAATGTGGTGGATTAGTGGTGGCTTGCACTTTTGACCATCGTATAGCGGATGCCTATTCTGCAAACATGTTCCTTGTATCATGGGCCGAAATGGCTCAGCCCATGATAACAAGCGGCGGTGACAGAGGAGCATTTCTTGGGTTTAATAGATTGGGTGGAGAGCATCGTCCAGTTCCTGGATTGGCAAGGATTTATTGTGGTAGCACTGGTGGAGAAGAAGGACCAACATTTGTGGTATCTTCAGGACAAAGGTTTCCAGAGTCGAAGGTTGATTTTGGATGGGGGAAGCCTGTGTTTGGATCTTATCATTTTCCTTGGGGAGGTAGTGCTGGCTATGTTATGCCAATGCCAAGCCCTAAAAGGAATGGTGACTGGTTGCTCTACATGCACCTTCCTAAGGGACACTTGCACTTCATGGAGGCCCAGGCTCCTCATTTCTTTAGACCAGTCTCTTGGGATTACCTCCTCAATTAA

Protein sequence

>MsG0580029674.01.T01

MTNEEIVAAALPMQEHWLPLSNLDLILPPVDVGVFFCYNKPIITTGTHHSIVGCLKNSLAKALVSYYAFAGEVVANSMDETVEGKLVPKKKHGVLAVQTTWMKCGGLVVACTFDHRIADAYSANMFLVSWAEMAQPMITSGGDRGAFLGFNRLGGEHRPVPGLARIYCGSTGGEEGPTFVVSSGQRFPESKVDFGWGKPVFGSYHFPWGGSAGYVMPMPSPKRNGDWLLYMHLPKGHLHFMEAQAPHFFRPVSWDYLLN*