Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001915.01.T01 | KEH41194.1 | 97.447 | 235 | 6 | 0 | 1 | 235 | 2 | 236 | 2.14E-162 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001915.01.T01 | Q9T0H8 | 68.803 | 234 | 66 | 2 | 2 | 235 | 18 | 244 | 5.64E-108 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001915.01.T01 | A0A072VGM0 | 97.447 | 235 | 6 | 0 | 1 | 235 | 2 | 236 | 1.02e-162 | 458 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0180001915.01 | 0.809473 | 1.859920e-50 | 1.093005e-47 |
| MsG0080049046.01 | MsG0180001915.01 | 0.991761 | 2.130073e-189 | 1.723908e-182 |
| MsG0180001915.01 | MsG0180003320.01 | 0.814168 | 1.767602e-51 | 1.177361e-48 |
| MsG0180001915.01 | MsG0180003849.01 | 0.811359 | 7.283840e-51 | 4.499096e-48 |
| MsG0180001915.01 | MsG0180005572.01 | 0.803025 | 4.245012e-49 | 2.110603e-46 |
| MsG0180001915.01 | MsG0280009232.01 | 0.824470 | 7.932156e-54 | 7.032186e-51 |
| MsG0180001915.01 | MsG0380016299.01 | 0.837534 | 4.911207e-57 | 6.398655e-54 |
| MsG0180001915.01 | MsG0380016300.01 | 0.820604 | 6.284227e-53 | 4.994856e-50 |
| MsG0180001915.01 | MsG0380017030.01 | 0.810844 | 9.417695e-51 | 5.738894e-48 |
| MsG0180001915.01 | MsG0380017168.01 | 0.800866 | 1.178935e-48 | 5.549446e-46 |
| MsG0180001915.01 | MsG0380017901.01 | 0.814811 | 1.274129e-51 | 8.635733e-49 |
| MsG0180001915.01 | MsG0480018433.01 | 0.816185 | 6.298697e-52 | 4.432451e-49 |
| MsG0180001915.01 | MsG0480019146.01 | 0.824168 | 9.341627e-54 | 8.211111e-51 |
| MsG0180001915.01 | MsG0480020904.01 | 0.848572 | 5.627769e-60 | 1.037257e-56 |
| MsG0180001915.01 | MsG0480021360.01 | 0.827244 | 1.741682e-54 | 1.671974e-51 |
| MsG0180001915.01 | MsG0480022055.01 | 0.807606 | 4.656268e-50 | 2.604714e-47 |
| MsG0180001915.01 | MsG0480022840.01 | 0.804676 | 1.926936e-49 | 9.996484e-47 |
| MsG0180001915.01 | MsG0580024087.01 | 0.836561 | 8.708975e-57 | 1.101487e-53 |
| MsG0180001915.01 | MsG0580025590.01 | 0.817876 | 2.626733e-52 | 1.936025e-49 |
| MsG0180001915.01 | MsG0580026521.01 | 0.829148 | 6.053157e-55 | 6.142558e-52 |
| MsG0180001915.01 | MsG0580029674.01 | 0.800746 | 1.247170e-48 | 5.852622e-46 |
| MsG0180001915.01 | MsG0680030296.01 | 0.805482 | 1.307007e-49 | 6.922510e-47 |
| MsG0180001915.01 | MsG0680030613.01 | 0.816039 | 6.791882e-52 | 4.760598e-49 |
| MsG0180001915.01 | MsG0680034238.01 | 0.811949 | 5.418982e-51 | 3.400215e-48 |
| MsG0180001915.01 | MsG0680034333.01 | 0.806476 | 8.075380e-50 | 4.387393e-47 |
| MsG0180001915.01 | MsG0680034354.01 | 0.803304 | 3.715440e-49 | 1.860644e-46 |
| MsG0180001915.01 | MsG0680034418.01 | 0.815234 | 1.026189e-51 | 7.035236e-49 |
| MsG0180001915.01 | MsG0780036839.01 | 0.825902 | 3.637474e-54 | 3.359880e-51 |
| MsG0180001915.01 | MsG0780038519.01 | 0.809533 | 1.805331e-50 | 1.062664e-47 |
| MsG0180001915.01 | MsG0780039619.01 | 0.832424 | 9.527090e-56 | 1.064421e-52 |
| MsG0180001915.01 | MsG0780039979.01 | 0.804875 | 1.750951e-49 | 9.131344e-47 |
| MsG0180001915.01 | MsG0780040497.01 | 0.801056 | 1.078165e-48 | 5.099835e-46 |
| MsG0180001915.01 | MsG0780040498.01 | 0.803439 | 3.484972e-49 | 1.751292e-46 |
| MsG0180001915.01 | MsG0780040560.01 | 0.807596 | 4.679476e-50 | 2.616949e-47 |
| MsG0180001915.01 | MsG0780040598.01 | 0.803560 | 3.289070e-49 | 1.658119e-46 |
| MsG0180001915.01 | MsG0780040716.01 | 0.800253 | 1.571477e-48 | 7.283005e-46 |
| MsG0180001915.01 | MsG0780041036.01 | 0.800480 | 1.412794e-48 | 6.585269e-46 |
| MsG0180001915.01 | MsG0780041180.01 | 0.805348 | 1.394263e-49 | 7.359284e-47 |
| MsG0180001915.01 | MsG0880043212.01 | 0.823315 | 1.479763e-53 | 1.269683e-50 |
| MsG0180001915.01 | MsG0880043906.01 | 0.803031 | 4.231466e-49 | 2.104316e-46 |
| MsG0180001915.01 | MsG0880045854.01 | 0.807424 | 5.090359e-50 | 2.834199e-47 |
| MsG0180001915.01 | MsG0880047383.01 | 0.805292 | 1.432633e-49 | 7.550814e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001915.01.T01 | MTR_1g046490 | 97.447 | 235 | 6 | 0 | 1 | 235 | 2 | 236 | 2.60e-166 | 458 |
| MsG0180001915.01.T01 | MTR_1g046800 | 89.130 | 230 | 23 | 1 | 6 | 235 | 23 | 250 | 1.18e-146 | 409 |
| MsG0180001915.01.T01 | MTR_1g046500 | 89.565 | 230 | 22 | 1 | 6 | 235 | 23 | 250 | 2.29e-142 | 398 |
| MsG0180001915.01.T01 | MTR_4g062470 | 42.982 | 228 | 109 | 6 | 22 | 235 | 84 | 304 | 4.56e-40 | 140 |
| MsG0180001915.01.T01 | MTR_4g062520 | 42.060 | 233 | 113 | 6 | 18 | 235 | 78 | 303 | 5.94e-40 | 139 |
| MsG0180001915.01.T01 | MTR_1g115510 | 38.235 | 238 | 124 | 6 | 18 | 235 | 119 | 353 | 2.20e-38 | 137 |
| MsG0180001915.01.T01 | MTR_7g021300 | 36.719 | 256 | 122 | 8 | 4 | 233 | 146 | 387 | 4.86e-38 | 136 |
| MsG0180001915.01.T01 | MTR_4g062460 | 38.596 | 228 | 120 | 7 | 20 | 233 | 36 | 257 | 5.28e-34 | 123 |
| MsG0180001915.01.T01 | MTR_1g115515 | 27.854 | 219 | 126 | 4 | 22 | 235 | 43 | 234 | 1.75e-17 | 79.0 |
| MsG0180001915.01.T01 | MTR_1g054525 | 35.780 | 109 | 67 | 2 | 103 | 208 | 62 | 170 | 3.09e-15 | 72.0 |
| MsG0180001915.01.T01 | MTR_4g049550 | 37.069 | 116 | 64 | 3 | 121 | 233 | 66 | 175 | 1.07e-14 | 70.1 |
| MsG0180001915.01.T01 | MTR_4g122110 | 37.079 | 89 | 55 | 1 | 119 | 206 | 66 | 154 | 3.09e-14 | 68.9 |
| MsG0180001915.01.T01 | MTR_7g093790 | 41.053 | 95 | 54 | 2 | 118 | 210 | 75 | 169 | 5.99e-14 | 68.6 |
| MsG0180001915.01.T01 | MTR_4g122130 | 39.000 | 100 | 58 | 3 | 113 | 210 | 60 | 158 | 8.16e-14 | 67.8 |
| MsG0180001915.01.T01 | MTR_4g013385 | 40.000 | 90 | 53 | 1 | 121 | 209 | 78 | 167 | 9.76e-14 | 67.8 |
| MsG0180001915.01.T01 | MTR_0433s0040 | 40.000 | 90 | 53 | 1 | 121 | 209 | 78 | 167 | 9.76e-14 | 67.8 |
| MsG0180001915.01.T01 | MTR_7g093820 | 38.947 | 95 | 56 | 2 | 118 | 210 | 78 | 172 | 1.74e-13 | 67.0 |
| MsG0180001915.01.T01 | MTR_7g093850 | 38.947 | 95 | 56 | 2 | 118 | 210 | 78 | 172 | 2.13e-13 | 67.0 |
| MsG0180001915.01.T01 | MTR_4g013335 | 29.927 | 137 | 93 | 2 | 75 | 208 | 36 | 172 | 2.65e-13 | 66.6 |
| MsG0180001915.01.T01 | MTR_7g093830 | 38.947 | 95 | 56 | 2 | 118 | 210 | 77 | 171 | 3.18e-13 | 66.6 |
| MsG0180001915.01.T01 | MTR_4g049570 | 34.211 | 114 | 70 | 2 | 121 | 233 | 66 | 175 | 5.61e-13 | 65.5 |
| MsG0180001915.01.T01 | MTR_4g013310 | 30.147 | 136 | 84 | 3 | 105 | 235 | 67 | 196 | 6.82e-13 | 65.5 |
| MsG0180001915.01.T01 | MTR_4g013325 | 36.667 | 90 | 56 | 1 | 120 | 208 | 86 | 175 | 1.04e-12 | 65.1 |
| MsG0180001915.01.T01 | MTR_4g013770 | 38.298 | 94 | 57 | 1 | 120 | 212 | 78 | 171 | 2.00e-12 | 64.3 |
| MsG0180001915.01.T01 | MTR_3g034030 | 32.407 | 108 | 72 | 1 | 101 | 207 | 53 | 160 | 4.87e-12 | 63.2 |
| MsG0180001915.01.T01 | MTR_4g078885 | 31.481 | 108 | 73 | 1 | 101 | 207 | 53 | 160 | 2.50e-11 | 61.2 |
| MsG0180001915.01.T01 | MTR_7g093870 | 36.082 | 97 | 56 | 2 | 119 | 210 | 76 | 171 | 4.39e-11 | 60.8 |
| MsG0180001915.01.T01 | MTR_4g013345 | 35.955 | 89 | 56 | 1 | 121 | 208 | 84 | 172 | 5.92e-11 | 60.1 |
| MsG0180001915.01.T01 | MTR_5g096120 | 41.304 | 92 | 52 | 1 | 121 | 210 | 76 | 167 | 7.64e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001915.01.T01 | AT4G13580 | 68.803 | 234 | 66 | 2 | 2 | 235 | 18 | 244 | 5.75e-109 | 313 |
| MsG0180001915.01.T01 | AT3G24020 | 67.382 | 233 | 69 | 2 | 3 | 235 | 18 | 243 | 3.98e-108 | 311 |
| MsG0180001915.01.T01 | AT1G07730 | 44.348 | 230 | 106 | 6 | 24 | 235 | 164 | 389 | 1.02e-43 | 151 |
| MsG0180001915.01.T01 | AT3G55230 | 39.918 | 243 | 124 | 7 | 14 | 235 | 62 | 303 | 1.36e-42 | 146 |
| MsG0180001915.01.T01 | AT2G28670 | 46.087 | 230 | 100 | 6 | 26 | 235 | 1 | 226 | 1.95e-42 | 144 |
| MsG0180001915.01.T01 | AT2G28670 | 46.121 | 232 | 101 | 6 | 24 | 235 | 209 | 436 | 1.21e-41 | 147 |
| MsG0180001915.01.T01 | AT2G39430 | 40.496 | 242 | 122 | 8 | 15 | 235 | 80 | 320 | 2.69e-41 | 144 |
| MsG0180001915.01.T01 | AT1G65870 | 33.636 | 110 | 70 | 2 | 107 | 213 | 62 | 171 | 1.20e-14 | 70.5 |
| MsG0180001915.01.T01 | AT5G42510 | 38.043 | 92 | 56 | 1 | 117 | 207 | 69 | 160 | 1.88e-13 | 67.0 |
| MsG0180001915.01.T01 | AT3G13650 | 34.409 | 93 | 60 | 1 | 121 | 212 | 74 | 166 | 2.58e-13 | 66.6 |
| MsG0180001915.01.T01 | AT5G42500 | 35.484 | 93 | 59 | 1 | 119 | 210 | 74 | 166 | 7.90e-13 | 65.1 |
| MsG0180001915.01.T01 | AT3G58090 | 34.091 | 88 | 57 | 1 | 124 | 210 | 163 | 250 | 3.51e-12 | 64.7 |
| MsG0180001915.01.T01 | AT5G49030 | 35.165 | 91 | 58 | 1 | 121 | 210 | 79 | 169 | 4.18e-12 | 65.9 |
| MsG0180001915.01.T01 | AT5G49040 | 35.165 | 91 | 58 | 1 | 121 | 210 | 79 | 169 | 4.19e-11 | 60.5 |
| MsG0180001915.01.T01 | AT1G22900 | 36.364 | 88 | 55 | 1 | 121 | 207 | 84 | 171 | 5.11e-11 | 60.5 |
| MsG0180001915.01.T01 | AT4G38700 | 36.082 | 97 | 57 | 3 | 119 | 210 | 72 | 168 | 7.28e-11 | 60.1 |
Find 70 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTCCTGTGGCTGCAAT+TGG | 0.276263 | 1:-29323324 | None:intergenic |
| CCTACTGTTAATGGTGTTAC+TGG | 0.279068 | 1:+29323519 | MsG0180001915.01.T01:CDS |
| GGATTAACACCATTTGCATT+AGG | 0.297019 | 1:-29323498 | None:intergenic |
| AAGTACTATGTCGCGATTAT+CGG | 0.316886 | 1:+29323845 | MsG0180001915.01.T01:CDS |
| GGACCTGATGGACTTGGATT+AGG | 0.319881 | 1:+29323627 | MsG0180001915.01.T01:CDS |
| GATGGACTTGGATTAGGATT+TGG | 0.351208 | 1:+29323633 | MsG0180001915.01.T01:CDS |
| GATTAACACCATTTGCATTA+GGG | 0.356622 | 1:-29323497 | None:intergenic |
| GGTGTTACTGGTATCCCTTT+AGG | 0.357291 | 1:+29323531 | MsG0180001915.01.T01:CDS |
| GGTGTTAATCCTACTGTTAA+TGG | 0.373730 | 1:+29323510 | MsG0180001915.01.T01:CDS |
| TTAACATCTCAACCAGAGTT+AGG | 0.377354 | 1:+29323681 | MsG0180001915.01.T01:CDS |
| TGATTGTTATTGTTGTTGTT+TGG | 0.384388 | 1:-29323582 | None:intergenic |
| ACTGGTATCCCTTTAGGAAC+TGG | 0.388166 | 1:+29323537 | MsG0180001915.01.T01:CDS |
| GGGAAGTTTAAGTATGCAAA+AGG | 0.390538 | 1:+29323882 | MsG0180001915.01.T01:CDS |
| CTTGGAATGTTGAATCCAAC+TGG | 0.413683 | 1:-29323459 | None:intergenic |
| ACAAATTGTTGGAAAGGGTC+AGG | 0.415848 | 1:+29323707 | MsG0180001915.01.T01:CDS |
| ACCTGTCCAGGTGGAATAAG+AGG | 0.418722 | 1:-29323921 | None:intergenic |
| TTGTTCATGCATGACATTCT+TGG | 0.430091 | 1:+29323360 | MsG0180001915.01.T01:CDS |
| CCTTTAGGAACTGGTTTAGC+TGG | 0.430422 | 1:+29323546 | MsG0180001915.01.T01:CDS |
| ATACTCATCAGTACTTCAAA+TGG | 0.444661 | 1:-29323983 | None:intergenic |
| CCGGTCACTGGTCGAGCCGT+TGG | 0.445896 | 1:-29323393 | None:intergenic |
| ACACCATTTGCATTAGGGAT+TGG | 0.448404 | 1:-29323492 | None:intergenic |
| ACCTCTTATTCCACCTGGAC+AGG | 0.449379 | 1:+29323920 | MsG0180001915.01.T01:CDS |
| TTATCGGTTGTAGGAGGGAC+AGG | 0.461945 | 1:+29323861 | MsG0180001915.01.T01:CDS |
| CAGCTAAACCAGTTCCTAAA+GGG | 0.469050 | 1:-29323545 | None:intergenic |
| AACAATGTTCAGTTAACGTT+AGG | 0.471550 | 1:+29323606 | MsG0180001915.01.T01:CDS |
| GGTTCACAAATTGTTGGAAA+GGG | 0.477487 | 1:+29323702 | MsG0180001915.01.T01:CDS |
| TGCATGAACAACTCAATGAT+TGG | 0.478315 | 1:-29323348 | None:intergenic |
| ATGCCAATCCCTAATGCAAA+TGG | 0.485841 | 1:+29323489 | MsG0180001915.01.T01:CDS |
| CGGTCACTGGTCGAGCCGTT+GGG | 0.485879 | 1:-29323392 | None:intergenic |
| CAAATTGTTGGAAAGGGTCA+GGG | 0.488459 | 1:+29323708 | MsG0180001915.01.T01:CDS |
| CCAGCTAAACCAGTTCCTAA+AGG | 0.497997 | 1:-29323546 | None:intergenic |
| AATCCTAATCCAAGTCCATC+AGG | 0.506312 | 1:-29323630 | None:intergenic |
| GAGTTAGGTTCACAAATTGT+TGG | 0.509703 | 1:+29323696 | MsG0180001915.01.T01:CDS |
| CGACCAGTGACCGGTTTGCT+CGG | 0.510231 | 1:+29323402 | MsG0180001915.01.T01:CDS |
| CCTGGACAGGTTGCTACTGA+TGG | 0.513998 | 1:+29323933 | MsG0180001915.01.T01:CDS |
| ATGTAGCAAGTTCGGCTGAC+GGG | 0.514478 | 1:+29323736 | MsG0180001915.01.T01:CDS |
| AGGTTCACAAATTGTTGGAA+AGG | 0.517920 | 1:+29323701 | MsG0180001915.01.T01:CDS |
| ACGTTAGGACCTGATGGACT+TGG | 0.520993 | 1:+29323621 | MsG0180001915.01.T01:CDS |
| CCATCAGTAGCAACCTGTCC+AGG | 0.527354 | 1:-29323933 | None:intergenic |
| TCGCGATTATCGGTTGTAGG+AGG | 0.528452 | 1:+29323855 | MsG0180001915.01.T01:CDS |
| GAATCCAACTGGGGTTGCAA+AGG | 0.532298 | 1:-29323448 | None:intergenic |
| ACAATTTGTGAACCTAACTC+TGG | 0.539499 | 1:-29323693 | None:intergenic |
| ATGTCGCGATTATCGGTTGT+AGG | 0.540679 | 1:+29323852 | MsG0180001915.01.T01:CDS |
| GTATATGTTGCCGAGCAAAC+CGG | 0.541501 | 1:-29323412 | None:intergenic |
| GGAAGTTTAAGTATGCAAAA+GGG | 0.542451 | 1:+29323883 | MsG0180001915.01.T01:CDS |
| TTCATGCATGACATTCTTGG+TGG | 0.543393 | 1:+29323363 | MsG0180001915.01.T01:CDS |
| AATCCAACTGGGGTTGCAAA+GGG | 0.544346 | 1:-29323447 | None:intergenic |
| AATGATTGGTTCCTTTCCTG+TGG | 0.544898 | 1:-29323334 | None:intergenic |
| GGGATTGGCATACTATCACT+TGG | 0.545050 | 1:-29323477 | None:intergenic |
| TTGCCGAGCAAACCGGTCAC+TGG | 0.546279 | 1:-29323405 | None:intergenic |
| CTGAGACCTCTTATTCCACC+TGG | 0.547547 | 1:+29323915 | MsG0180001915.01.T01:CDS |
| GTACCCTTTGCAACCCCAGT+TGG | 0.549320 | 1:+29323444 | MsG0180001915.01.T01:CDS |
| CGCGATTATCGGTTGTAGGA+GGG | 0.551209 | 1:+29323856 | MsG0180001915.01.T01:CDS |
| TCCAATTGCAGCCACAGGAA+AGG | 0.562874 | 1:+29323323 | MsG0180001915.01.T01:CDS |
| TGACGGGAGTAGACAGATGA+TGG | 0.563922 | 1:+29323752 | MsG0180001915.01.T01:CDS |
| ATTGATCCAATTGCAGCCAC+AGG | 0.569919 | 1:+29323318 | MsG0180001915.01.T01:CDS |
| CCAGTAACACCATTAACAGT+AGG | 0.579036 | 1:-29323519 | None:intergenic |
| CAGTTAACGTTAGGACCTGA+TGG | 0.580607 | 1:+29323615 | MsG0180001915.01.T01:CDS |
| AAATTGTTGGAAAGGGTCAG+GGG | 0.581072 | 1:+29323709 | MsG0180001915.01.T01:CDS |
| TATGTAGCAAGTTCGGCTGA+CGG | 0.590795 | 1:+29323735 | MsG0180001915.01.T01:CDS |
| CCAACGGCTCGACCAGTGAC+CGG | 0.606503 | 1:+29323393 | MsG0180001915.01.T01:CDS |
| TTGGAATGTTGAATCCAACT+GGG | 0.618283 | 1:-29323458 | None:intergenic |
| TACCATTGCAATGATGGCAA+TGG | 0.622938 | 1:+29323278 | None:intergenic |
| TCTTGGTGGCAGTAACCCAA+CGG | 0.656099 | 1:+29323377 | MsG0180001915.01.T01:CDS |
| TCAGTAGCAACCTGTCCAGG+TGG | 0.657359 | 1:-29323930 | None:intergenic |
| AATTGTTGGAAAGGGTCAGG+GGG | 0.661911 | 1:+29323710 | MsG0180001915.01.T01:CDS |
| TATCGGTTGTAGGAGGGACA+GGG | 0.674182 | 1:+29323862 | MsG0180001915.01.T01:CDS |
| ATGGTGCTGAGACTTTGTTG+AGG | 0.693982 | 1:+29323952 | MsG0180001915.01.T01:CDS |
| TTGCTCGGCAACATATACAG+TGG | 0.727097 | 1:+29323417 | MsG0180001915.01.T01:CDS |
| TGGAATGTTGAATCCAACTG+GGG | 0.746650 | 1:-29323457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGGTTTGTATAAGAT+TGG | + | Chr1:29323822-29323841 | MsG0180001915.01.T01:CDS | 20.0% |
| !! | GGTGATAGTTTGAATTTTTA+TGG | + | Chr1:29323807-29323826 | MsG0180001915.01.T01:CDS | 25.0% |
| !! | TGATTGTTATTGTTGTTGTT+TGG | - | Chr1:29323585-29323604 | None:intergenic | 25.0% |
| AACAATGTTCAGTTAACGTT+AGG | + | Chr1:29323606-29323625 | MsG0180001915.01.T01:CDS | 30.0% | |
| GATTAACACCATTTGCATTA+GGG | - | Chr1:29323500-29323519 | None:intergenic | 30.0% | |
| GGAAGTTTAAGTATGCAAAA+GGG | + | Chr1:29323883-29323902 | MsG0180001915.01.T01:CDS | 30.0% | |
| !! | GTTTTTACAGCACTTTTTGA+AGG | + | Chr1:29323774-29323793 | MsG0180001915.01.T01:CDS | 30.0% |
| AAGTACTATGTCGCGATTAT+CGG | + | Chr1:29323845-29323864 | MsG0180001915.01.T01:CDS | 35.0% | |
| ACAATTTGTGAACCTAACTC+TGG | - | Chr1:29323696-29323715 | None:intergenic | 35.0% | |
| AGGTTCACAAATTGTTGGAA+AGG | + | Chr1:29323701-29323720 | MsG0180001915.01.T01:CDS | 35.0% | |
| GAGTTAGGTTCACAAATTGT+TGG | + | Chr1:29323696-29323715 | MsG0180001915.01.T01:CDS | 35.0% | |
| GGATTAACACCATTTGCATT+AGG | - | Chr1:29323501-29323520 | None:intergenic | 35.0% | |
| GGGAAGTTTAAGTATGCAAA+AGG | + | Chr1:29323882-29323901 | MsG0180001915.01.T01:CDS | 35.0% | |
| GGTGTTAATCCTACTGTTAA+TGG | + | Chr1:29323510-29323529 | MsG0180001915.01.T01:CDS | 35.0% | |
| GGTTCACAAATTGTTGGAAA+GGG | + | Chr1:29323702-29323721 | MsG0180001915.01.T01:CDS | 35.0% | |
| TGCATGAACAACTCAATGAT+TGG | - | Chr1:29323351-29323370 | None:intergenic | 35.0% | |
| TTAACATCTCAACCAGAGTT+AGG | + | Chr1:29323681-29323700 | MsG0180001915.01.T01:CDS | 35.0% | |
| TTGGAATGTTGAATCCAACT+GGG | - | Chr1:29323461-29323480 | None:intergenic | 35.0% | |
| TTGTTCATGCATGACATTCT+TGG | + | Chr1:29323360-29323379 | MsG0180001915.01.T01:CDS | 35.0% | |
| !! | TTACAGCACTTTTTGAAGGA+GGG | + | Chr1:29323778-29323797 | MsG0180001915.01.T01:CDS | 35.0% |
| !! | TTTACAGCACTTTTTGAAGG+AGG | + | Chr1:29323777-29323796 | MsG0180001915.01.T01:CDS | 35.0% |
| AAATTGTTGGAAAGGGTCAG+GGG | + | Chr1:29323709-29323728 | MsG0180001915.01.T01:CDS | 40.0% | |
| AATCCTAATCCAAGTCCATC+AGG | - | Chr1:29323633-29323652 | None:intergenic | 40.0% | |
| ACAAATTGTTGGAAAGGGTC+AGG | + | Chr1:29323707-29323726 | MsG0180001915.01.T01:CDS | 40.0% | |
| ACACCATTTGCATTAGGGAT+TGG | - | Chr1:29323495-29323514 | None:intergenic | 40.0% | |
| ATGCCAATCCCTAATGCAAA+TGG | + | Chr1:29323489-29323508 | MsG0180001915.01.T01:CDS | 40.0% | |
| CAAATTGTTGGAAAGGGTCA+GGG | + | Chr1:29323708-29323727 | MsG0180001915.01.T01:CDS | 40.0% | |
| CAGCTAAACCAGTTCCTAAA+GGG | - | Chr1:29323548-29323567 | None:intergenic | 40.0% | |
| CCAGTAACACCATTAACAGT+AGG | - | Chr1:29323522-29323541 | None:intergenic | 40.0% | |
| CTTGGAATGTTGAATCCAAC+TGG | - | Chr1:29323462-29323481 | None:intergenic | 40.0% | |
| TGGAATGTTGAATCCAACTG+GGG | - | Chr1:29323460-29323479 | None:intergenic | 40.0% | |
| TTCATGCATGACATTCTTGG+TGG | + | Chr1:29323363-29323382 | MsG0180001915.01.T01:CDS | 40.0% | |
| ! | AATGATTGGTTCCTTTCCTG+TGG | - | Chr1:29323337-29323356 | None:intergenic | 40.0% |
| ! | GATGGACTTGGATTAGGATT+TGG | + | Chr1:29323633-29323652 | MsG0180001915.01.T01:CDS | 40.0% |
| !! | CCTACTGTTAATGGTGTTAC+TGG | + | Chr1:29323519-29323538 | MsG0180001915.01.T01:CDS | 40.0% |
| !! | TACAGCACTTTTTGAAGGAG+GGG | + | Chr1:29323779-29323798 | MsG0180001915.01.T01:CDS | 40.0% |
| AATCCAACTGGGGTTGCAAA+GGG | - | Chr1:29323450-29323469 | None:intergenic | 45.0% | |
| AATTGTTGGAAAGGGTCAGG+GGG | + | Chr1:29323710-29323729 | MsG0180001915.01.T01:CDS | 45.0% | |
| ATTGATCCAATTGCAGCCAC+AGG | + | Chr1:29323318-29323337 | MsG0180001915.01.T01:CDS | 45.0% | |
| CAGTTAACGTTAGGACCTGA+TGG | + | Chr1:29323615-29323634 | MsG0180001915.01.T01:CDS | 45.0% | |
| CCAGCTAAACCAGTTCCTAA+AGG | - | Chr1:29323549-29323568 | None:intergenic | 45.0% | |
| GTATATGTTGCCGAGCAAAC+CGG | - | Chr1:29323415-29323434 | None:intergenic | 45.0% | |
| TATGTAGCAAGTTCGGCTGA+CGG | + | Chr1:29323735-29323754 | MsG0180001915.01.T01:CDS | 45.0% | |
| TTGCTCGGCAACATATACAG+TGG | + | Chr1:29323417-29323436 | MsG0180001915.01.T01:CDS | 45.0% | |
| ! | ACTGGTATCCCTTTAGGAAC+TGG | + | Chr1:29323537-29323556 | MsG0180001915.01.T01:CDS | 45.0% |
| ! | ATGGTGCTGAGACTTTGTTG+AGG | + | Chr1:29323952-29323971 | MsG0180001915.01.T01:CDS | 45.0% |
| ! | ATGTCGCGATTATCGGTTGT+AGG | + | Chr1:29323852-29323871 | MsG0180001915.01.T01:CDS | 45.0% |
| ! | CCTTTAGGAACTGGTTTAGC+TGG | + | Chr1:29323546-29323565 | MsG0180001915.01.T01:CDS | 45.0% |
| ! | GGGATTGGCATACTATCACT+TGG | - | Chr1:29323480-29323499 | None:intergenic | 45.0% |
| !! | CTTTTTGAAGGAGGGGAGTA+TGG | + | Chr1:29323786-29323805 | MsG0180001915.01.T01:CDS | 45.0% |
| !! | GGTGTTACTGGTATCCCTTT+AGG | + | Chr1:29323531-29323550 | MsG0180001915.01.T01:CDS | 45.0% |
| ACCTCTTATTCCACCTGGAC+AGG | + | Chr1:29323920-29323939 | MsG0180001915.01.T01:CDS | 50.0% | |
| ACCTGTCCAGGTGGAATAAG+AGG | - | Chr1:29323924-29323943 | None:intergenic | 50.0% | |
| ATGTAGCAAGTTCGGCTGAC+GGG | + | Chr1:29323736-29323755 | MsG0180001915.01.T01:CDS | 50.0% | |
| CTGAGACCTCTTATTCCACC+TGG | + | Chr1:29323915-29323934 | MsG0180001915.01.T01:CDS | 50.0% | |
| GAATCCAACTGGGGTTGCAA+AGG | - | Chr1:29323451-29323470 | None:intergenic | 50.0% | |
| TCCAATTGCAGCCACAGGAA+AGG | + | Chr1:29323323-29323342 | MsG0180001915.01.T01:CDS | 50.0% | |
| TCCTTTCCTGTGGCTGCAAT+TGG | - | Chr1:29323327-29323346 | None:intergenic | 50.0% | |
| TGACGGGAGTAGACAGATGA+TGG | + | Chr1:29323752-29323771 | MsG0180001915.01.T01:CDS | 50.0% | |
| ! | CGCGATTATCGGTTGTAGGA+GGG | + | Chr1:29323856-29323875 | MsG0180001915.01.T01:CDS | 50.0% |
| ! | GGGGGTGTATGTAGCAAGTT+CGG | + | Chr1:29323728-29323747 | MsG0180001915.01.T01:CDS | 50.0% |
| ! | TATCGGTTGTAGGAGGGACA+GGG | + | Chr1:29323862-29323881 | MsG0180001915.01.T01:CDS | 50.0% |
| ! | TCGCGATTATCGGTTGTAGG+AGG | + | Chr1:29323855-29323874 | MsG0180001915.01.T01:CDS | 50.0% |
| ! | TCTTGGTGGCAGTAACCCAA+CGG | + | Chr1:29323377-29323396 | MsG0180001915.01.T01:CDS | 50.0% |
| ! | TTATCGGTTGTAGGAGGGAC+AGG | + | Chr1:29323861-29323880 | MsG0180001915.01.T01:CDS | 50.0% |
| !! | ACGTTAGGACCTGATGGACT+TGG | + | Chr1:29323621-29323640 | MsG0180001915.01.T01:CDS | 50.0% |
| !! | GGACCTGATGGACTTGGATT+AGG | + | Chr1:29323627-29323646 | MsG0180001915.01.T01:CDS | 50.0% |
| CCATCAGTAGCAACCTGTCC+AGG | - | Chr1:29323936-29323955 | None:intergenic | 55.0% | |
| CCTGGACAGGTTGCTACTGA+TGG | + | Chr1:29323933-29323952 | MsG0180001915.01.T01:CDS | 55.0% | |
| GTACCCTTTGCAACCCCAGT+TGG | + | Chr1:29323444-29323463 | MsG0180001915.01.T01:CDS | 55.0% | |
| TCAGTAGCAACCTGTCCAGG+TGG | - | Chr1:29323933-29323952 | None:intergenic | 55.0% | |
| TTGCCGAGCAAACCGGTCAC+TGG | - | Chr1:29323408-29323427 | None:intergenic | 60.0% | |
| !! | CGACCAGTGACCGGTTTGCT+CGG | + | Chr1:29323402-29323421 | MsG0180001915.01.T01:CDS | 60.0% |
| CCAACGGCTCGACCAGTGAC+CGG | + | Chr1:29323393-29323412 | MsG0180001915.01.T01:CDS | 65.0% | |
| CGGTCACTGGTCGAGCCGTT+GGG | - | Chr1:29323395-29323414 | None:intergenic | 65.0% | |
| CCGGTCACTGGTCGAGCCGT+TGG | - | Chr1:29323396-29323415 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 29323291 | 29323998 | 29323291 | ID=MsG0180001915.01;Name=MsG0180001915.01 |
| Chr1 | mRNA | 29323291 | 29323998 | 29323291 | ID=MsG0180001915.01.T01;Parent=MsG0180001915.01;Name=MsG0180001915.01.T01;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|235 |
| Chr1 | exon | 29323291 | 29323998 | 29323291 | ID=MsG0180001915.01.T01:exon:42150;Parent=MsG0180001915.01.T01 |
| Chr1 | CDS | 29323291 | 29323998 | 29323291 | ID=MsG0180001915.01.T01:cds;Parent=MsG0180001915.01.T01 |
| Gene Sequence |
| Protein sequence |
