AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030476.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030476.01.T01 MTR_6g007613 85.987 157 16 3 22 173 15 170 2.15e-90 261
MsG0680030476.01.T01 MTR_7g074020 76.023 171 37 2 7 173 1 171 1.42e-85 249
MsG0680030476.01.T01 MTR_6g007613 96.552 116 2 1 22 135 15 130 1.49e-75 223
MsG0680030476.01.T01 MTR_7g074020 93.103 116 6 1 22 135 16 131 3.48e-72 215
MsG0680030476.01.T01 MTR_5g088320 39.161 143 83 2 28 166 4 146 1.46e-26 98.6
MsG0680030476.01.T01 MTR_5g088320 43.421 76 43 0 25 100 74 149 1.20e-12 62.4
MsG0680030476.01.T01 MTR_6g025320 39.161 143 83 2 28 166 4 146 3.24e-26 97.8
MsG0680030476.01.T01 MTR_6g025320 43.421 76 43 0 25 100 74 149 1.26e-12 62.4
MsG0680030476.01.T01 MTR_1g076650 38.889 144 84 2 27 166 3 146 3.29e-26 97.8
MsG0680030476.01.T01 MTR_1g076650 43.836 73 41 0 25 97 74 146 4.42e-13 63.5
MsG0680030476.01.T01 MTR_7g087610 38.462 143 84 2 28 166 4 146 6.81e-26 97.1
MsG0680030476.01.T01 MTR_7g087610 44.737 76 42 0 25 100 74 149 2.48e-13 64.3
MsG0680030476.01.T01 MTR_1g041285 40.741 135 76 2 36 166 12 146 1.17e-23 91.3
MsG0680030476.01.T01 MTR_1g041285 38.202 89 49 1 15 97 58 146 2.06e-11 59.3
MsG0680030476.01.T01 MTR_1g032070 33.333 144 92 2 32 171 42 185 4.59e-16 72.8
MsG0680030476.01.T01 MTR_1g071150 35.374 147 88 4 27 167 3 148 1.47e-15 70.1
MsG0680030476.01.T01 MTR_1g071150 38.961 77 43 1 21 97 73 145 4.47e-11 58.2
MsG0680030476.01.T01 MTR_7g075040 33.333 159 87 6 24 166 35 190 1.59e-15 71.2
MsG0680030476.01.T01 MTR_4g067270 30.986 142 92 3 36 171 5 146 2.29e-15 69.7
MsG0680030476.01.T01 MTR_8g105230 31.469 143 90 3 24 162 28 166 5.19e-15 69.7
MsG0680030476.01.T01 MTR_0168s0120 35.455 110 67 2 61 166 1 110 8.18e-15 67.4
MsG0680030476.01.T01 MTR_0168s0120 43.421 76 43 0 25 100 38 113 4.60e-13 62.8
MsG0680030476.01.T01 MTR_6g025320 35.455 110 67 2 61 166 1 110 8.18e-15 67.4
MsG0680030476.01.T01 MTR_6g025320 43.421 76 43 0 25 100 38 113 4.60e-13 62.8
MsG0680030476.01.T01 MTR_3g067610 34.286 140 84 4 34 169 3 138 9.72e-15 67.8
MsG0680030476.01.T01 MTR_8g107110 33.088 136 86 3 36 167 24 158 1.69e-14 67.8
MsG0680030476.01.T01 MTR_6g079570 38.961 77 47 0 25 101 88 164 3.54e-14 67.0
MsG0680030476.01.T01 MTR_7g106710 31.944 144 93 4 28 168 432 573 6.64e-14 68.9
MsG0680030476.01.T01 MTR_5g079340 33.333 135 85 3 36 166 4 137 1.83e-13 64.3
MsG0680030476.01.T01 MTR_5g079340 37.037 81 48 2 21 98 58 138 8.72e-11 57.4
MsG0680030476.01.T01 MTR_8g095440 34.559 136 82 4 37 168 336 468 1.95e-13 67.8
MsG0680030476.01.T01 MTR_1g055255 33.333 135 85 4 37 168 430 562 5.34e-13 66.2
MsG0680030476.01.T01 MTR_8g099095 33.824 136 84 4 37 168 372 505 6.63e-13 66.2
MsG0680030476.01.T01 MTR_5g009830 32.609 138 83 4 37 168 372 505 6.70e-13 66.2
MsG0680030476.01.T01 MTR_1g096490 32.353 136 85 4 37 168 336 468 8.11e-13 65.9
MsG0680030476.01.T01 MTR_8g036075 34.266 143 82 5 36 166 49 191 8.87e-13 63.9
MsG0680030476.01.T01 MTR_7g090450 48.529 68 34 1 31 97 145 212 3.32e-12 62.8
MsG0680030476.01.T01 MTR_3g083470 44.444 63 35 0 35 97 155 217 3.93e-12 62.8
MsG0680030476.01.T01 MTR_3g098090 30.128 156 98 5 21 168 318 470 8.38e-12 62.8
MsG0680030476.01.T01 MTR_5g011850 26.761 142 98 3 29 166 5 144 9.78e-12 60.1
MsG0680030476.01.T01 MTR_3g098070 31.618 136 86 4 37 168 335 467 1.08e-11 62.4
MsG0680030476.01.T01 MTR_1g046950 30.935 139 90 3 36 168 4 142 1.69e-11 59.3
MsG0680030476.01.T01 MTR_1g046950 39.394 66 40 0 33 98 76 141 2.22e-11 58.9
MsG0680030476.01.T01 MTR_5g092810 39.394 99 51 3 28 122 389 482 2.40e-11 61.6
MsG0680030476.01.T01 MTR_4g132040 36.111 144 79 7 37 173 401 538 2.57e-11 61.6
MsG0680030476.01.T01 MTR_0028s0170 30.882 136 88 4 37 168 384 517 4.17e-11 60.8
MsG0680030476.01.T01 MTR_7g089760 32.394 142 90 3 36 171 5 146 4.96e-11 58.2
MsG0680030476.01.T01 MTR_7g115040 34.074 135 85 2 36 166 12 146 5.05e-11 58.2
MsG0680030476.01.T01 MTR_5g089320 30.435 138 86 4 37 168 374 507 7.02e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030476.01.T01 AT3G50360 69.481 154 43 2 22 171 13 166 1.11e-64 196
MsG0680030476.01.T01 AT4G37010 54.375 160 63 3 16 171 13 166 4.15e-48 154
MsG0680030476.01.T01 AT4G37010 54.375 160 63 3 16 171 17 170 4.39e-48 154
MsG0680030476.01.T01 AT5G37780 39.161 143 83 2 28 166 4 146 6.37e-27 99.8
MsG0680030476.01.T01 AT5G37780 48.485 66 34 0 35 100 84 149 1.05e-12 62.8
MsG0680030476.01.T01 AT1G66410 39.161 143 83 2 28 166 4 146 6.37e-27 99.8
MsG0680030476.01.T01 AT1G66410 48.485 66 34 0 35 100 84 149 1.05e-12 62.8
MsG0680030476.01.T01 AT3G56800 39.860 143 82 2 28 166 4 146 1.24e-26 99.0
MsG0680030476.01.T01 AT3G56800 43.421 76 43 0 25 100 74 149 9.64e-13 62.8
MsG0680030476.01.T01 AT2G27030 39.860 143 82 2 28 166 4 146 1.24e-26 99.0
MsG0680030476.01.T01 AT2G27030 43.421 76 43 0 25 100 74 149 9.64e-13 62.8
MsG0680030476.01.T01 AT2G41110 39.860 143 82 2 28 166 4 146 1.24e-26 99.0
MsG0680030476.01.T01 AT2G41110 43.421 76 43 0 25 100 74 149 9.64e-13 62.8
MsG0680030476.01.T01 AT2G27030 39.860 143 82 2 28 166 4 146 1.91e-26 99.4
MsG0680030476.01.T01 AT2G27030 43.421 76 43 0 25 100 74 149 9.06e-13 63.5
MsG0680030476.01.T01 AT3G43810 39.161 143 83 2 28 166 4 146 3.39e-26 97.8
MsG0680030476.01.T01 AT3G43810 43.421 76 43 0 25 100 74 149 1.32e-12 62.4
MsG0680030476.01.T01 AT5G21274 39.161 143 83 2 28 166 4 146 5.11e-26 97.4
MsG0680030476.01.T01 AT5G21274 42.105 76 44 0 25 100 74 149 4.00e-12 61.2
MsG0680030476.01.T01 AT3G43810 39.161 143 83 2 28 166 4 146 7.74e-26 98.6
MsG0680030476.01.T01 AT3G43810 42.667 75 43 0 25 99 74 148 9.19e-12 61.6
MsG0680030476.01.T01 AT3G22930 37.762 143 85 2 28 166 27 169 6.11e-24 92.8
MsG0680030476.01.T01 AT5G37780 35.443 158 83 3 28 166 4 161 4.70e-23 90.1
MsG0680030476.01.T01 AT5G37780 48.485 66 34 0 35 100 99 164 1.08e-12 63.2
MsG0680030476.01.T01 AT2G41110 36.774 155 82 3 28 166 4 158 5.58e-23 89.7
MsG0680030476.01.T01 AT2G41110 43.421 76 43 0 25 100 86 161 1.49e-12 62.8
MsG0680030476.01.T01 AT3G22930 41.905 105 59 1 28 130 27 131 5.24e-22 86.7
MsG0680030476.01.T01 AT4G14640 36.620 142 86 2 29 166 6 147 5.35e-22 87.0
MsG0680030476.01.T01 AT5G37780 33.136 169 83 3 28 166 4 172 2.96e-21 85.9
MsG0680030476.01.T01 AT5G37780 48.485 66 34 0 35 100 110 175 1.19e-12 63.2
MsG0680030476.01.T01 AT1G66410 36.601 153 83 3 28 166 4 156 1.15e-20 84.0
MsG0680030476.01.T01 AT1G66410 48.485 66 34 0 35 100 94 159 9.42e-13 63.2
MsG0680030476.01.T01 AT1G24620 32.759 174 101 4 13 172 6 177 3.74e-20 83.2
MsG0680030476.01.T01 AT4G14640 40.777 103 59 1 29 129 6 108 6.16e-20 80.9
MsG0680030476.01.T01 AT5G37780 36.066 122 74 2 49 166 12 133 1.64e-18 77.4
MsG0680030476.01.T01 AT5G37780 48.485 66 34 0 35 100 71 136 4.44e-13 63.5
MsG0680030476.01.T01 AT1G66410 35.455 110 67 2 61 166 1 110 3.86e-15 68.2
MsG0680030476.01.T01 AT1G66410 48.485 66 34 0 35 100 48 113 3.00e-13 63.2
MsG0680030476.01.T01 AT1G66410 35.455 110 67 2 61 166 1 110 3.86e-15 68.2
MsG0680030476.01.T01 AT1G66410 48.485 66 34 0 35 100 48 113 3.00e-13 63.2
MsG0680030476.01.T01 AT2G43290 31.973 147 89 5 36 171 65 211 4.30e-15 70.5
MsG0680030476.01.T01 AT1G05990 34.266 143 87 4 36 171 5 147 6.20e-15 68.6
MsG0680030476.01.T01 AT3G43810 35.455 110 67 2 61 166 1 110 8.57e-15 67.4
MsG0680030476.01.T01 AT3G43810 43.421 76 43 0 25 100 38 113 4.82e-13 62.8
MsG0680030476.01.T01 AT3G43810 35.455 110 67 2 61 166 1 110 8.57e-15 67.4
MsG0680030476.01.T01 AT3G43810 43.421 76 43 0 25 100 38 113 4.82e-13 62.8
MsG0680030476.01.T01 AT4G14640 50.000 64 32 0 34 97 66 129 3.01e-14 66.2
MsG0680030476.01.T01 AT4G14640 33.058 121 77 2 50 166 9 129 4.13e-14 65.9
MsG0680030476.01.T01 AT5G37770 46.875 64 34 0 35 98 93 156 3.16e-14 67.0
MsG0680030476.01.T01 AT5G37770 46.875 64 34 0 35 98 93 156 3.16e-14 67.0
MsG0680030476.01.T01 AT1G18210 31.618 136 85 3 35 166 22 153 6.43e-14 66.2
MsG0680030476.01.T01 AT1G18210 42.857 63 36 0 36 98 92 154 3.56e-11 58.9
MsG0680030476.01.T01 AT1G18210 31.618 136 85 3 35 166 22 153 6.43e-14 66.2
MsG0680030476.01.T01 AT1G18210 42.857 63 36 0 36 98 92 154 3.56e-11 58.9
MsG0680030476.01.T01 AT5G23580 35.294 136 81 4 37 168 328 460 9.77e-14 68.6
MsG0680030476.01.T01 AT1G73630 29.787 141 91 3 30 166 14 150 1.18e-13 65.5
MsG0680030476.01.T01 AT1G62820 28.082 146 99 3 25 166 2 145 3.68e-13 63.9
MsG0680030476.01.T01 AT2G41100 35.000 100 62 1 20 119 50 146 3.97e-13 64.7
MsG0680030476.01.T01 AT2G41100 36.264 91 55 1 29 119 5 92 4.13e-13 63.5
MsG0680030476.01.T01 AT1G12310 28.082 146 99 3 25 166 2 145 4.26e-13 63.9
MsG0680030476.01.T01 AT3G51920 34.043 94 62 0 29 122 5 98 8.14e-13 63.2
MsG0680030476.01.T01 AT2G41090 29.167 144 95 3 27 166 3 143 8.86e-13 63.9
MsG0680030476.01.T01 AT2G41100 35.000 100 62 1 20 119 140 236 1.47e-12 64.3
MsG0680030476.01.T01 AT2G41100 28.931 159 92 4 29 166 59 217 3.49e-11 60.5
MsG0680030476.01.T01 AT2G41100 35.000 100 62 1 20 119 140 236 1.47e-12 64.3
MsG0680030476.01.T01 AT2G41100 28.931 159 92 4 29 166 59 217 3.49e-11 60.5
MsG0680030476.01.T01 AT2G41100 35.000 100 62 1 20 119 140 236 1.47e-12 64.3
MsG0680030476.01.T01 AT2G41100 28.931 159 92 4 29 166 59 217 3.49e-11 60.5
MsG0680030476.01.T01 AT3G59440 28.472 144 96 4 36 173 51 193 1.61e-12 63.2
MsG0680030476.01.T01 AT2G41100 35.000 100 62 1 20 119 175 271 1.98e-12 64.3
MsG0680030476.01.T01 AT2G41100 28.931 159 92 4 29 166 94 252 4.40e-11 60.5
MsG0680030476.01.T01 AT2G41100 35.000 100 62 1 20 119 175 271 1.98e-12 64.3
MsG0680030476.01.T01 AT2G41100 28.931 159 92 4 29 166 94 252 4.40e-11 60.5
MsG0680030476.01.T01 AT5G42380 27.206 136 94 3 36 166 49 184 2.04e-12 62.8
MsG0680030476.01.T01 AT4G09570 32.593 135 86 4 37 168 331 463 3.44e-12 63.9
MsG0680030476.01.T01 AT2G17290 31.852 135 87 3 37 168 391 523 3.59e-12 63.9
MsG0680030476.01.T01 AT2G17290 31.852 135 87 3 37 168 391 523 3.59e-12 63.9
MsG0680030476.01.T01 AT4G35310 30.769 143 94 3 29 168 395 535 1.08e-11 62.8
MsG0680030476.01.T01 AT4G35310 30.769 143 94 3 29 168 395 535 1.08e-11 62.8
MsG0680030476.01.T01 AT1G35670 31.852 135 87 4 37 168 332 464 1.09e-11 62.8
MsG0680030476.01.T01 AT1G66400 42.857 63 36 0 35 97 89 151 1.78e-11 59.7
MsG0680030476.01.T01 AT1G66400 29.936 157 100 5 22 170 3 157 3.50e-11 58.9
MsG0680030476.01.T01 AT5G19360 32.609 138 83 4 37 168 374 507 2.16e-11 61.6
MsG0680030476.01.T01 AT3G20410 34.058 138 81 5 35 166 395 528 3.02e-11 61.2
MsG0680030476.01.T01 AT3G20410 34.058 138 81 5 35 166 395 528 3.02e-11 61.2
MsG0680030476.01.T01 AT5G12180 31.884 138 84 4 37 168 379 512 3.63e-11 61.2
MsG0680030476.01.T01 AT3G03000 40.000 70 42 0 30 99 88 157 5.11e-11 58.5
MsG0680030476.01.T01 AT4G04710 32.680 153 75 5 29 166 330 469 6.36e-11 60.5
MsG0680030476.01.T01 AT4G04710 32.680 153 75 5 29 166 343 482 7.19e-11 60.1
MsG0680030476.01.T01 AT4G04710 32.680 153 75 5 29 166 316 455 8.73e-11 60.1

Find 42 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGTCCCTTTCTCCTATTT+TGG 0.263316 6:-3441023 None:intergenic
ACTGTGGTAACTTACTATTT+TGG 0.296930 6:-3441256 None:intergenic
TATCAGTCATCTATACTTAG+AGG 0.369587 6:+3440302 MsG0680030476.01.T01:CDS
CACATGATGACGGCCAAAAT+AGG 0.383388 6:+3441010 MsG0680030476.01.T01:CDS
TCTTATCTTTGCAGGGCCCT+TGG 0.389631 6:+3440636 MsG0680030476.01.T01:intron
TAAATTGTGCATTGTTGATT+GGG 0.392108 6:-3442928 None:intergenic
ATAAATTGTGCATTGTTGAT+TGG 0.407288 6:-3442929 None:intergenic
TTGTGCTATGTGCAAATTGT+AGG 0.412129 6:+3442808 MsG0680030476.01.T01:three_prime_UTR
ACTAGTGACGGAAGCTTGTT+CGG 0.446170 6:-3442710 None:intergenic
TTTAGGTACTATTGATGCTA+AGG 0.461188 6:+3440520 MsG0680030476.01.T01:intron
ATCATCATGACGAATTCCTC+GGG 0.465354 6:-3442684 None:intergenic
CTATACTTAGAGGGGAGTCC+AGG 0.471234 6:+3440312 MsG0680030476.01.T01:CDS
GACGGCCAAAATAGGAGAAA+GGG 0.511185 6:+3441018 MsG0680030476.01.T01:CDS
CATCATCATGACGAATTCCT+CGG 0.513311 6:-3442685 None:intergenic
TTTGAATTATTCGATACTGA+TGG 0.525178 6:+3440405 MsG0680030476.01.T01:CDS
TTGATCTCTTGTCTCTTCTG+AGG 0.531717 6:-3440375 None:intergenic
TTATTCGATACTGATGGCTC+AGG 0.532150 6:+3440411 MsG0680030476.01.T01:CDS
TCAGAAGAGACAAGAGATCA+AGG 0.536774 6:+3440377 MsG0680030476.01.T01:CDS
TGACGGCCAAAATAGGAGAA+AGG 0.541025 6:+3441017 MsG0680030476.01.T01:CDS
ATCAGTCATCTATACTTAGA+GGG 0.541592 6:+3440303 MsG0680030476.01.T01:CDS
GTCTCTTCTGAGGCGTCAAG+TGG 0.545606 6:-3440365 None:intergenic
CTTCTGTCATCTCAAATCCA+AGG 0.552042 6:-3440653 None:intergenic
AGGAGAAAGGGACACTAAAG+AGG 0.561951 6:+3441030 MsG0680030476.01.T01:CDS
TGAGCAAATGATAGCAGATG+TGG 0.566216 6:+3440946 MsG0680030476.01.T01:CDS
CTAAGTATAGATGACTGATA+CGG 0.566728 6:-3440299 None:intergenic
TTCTGTCATCTCAAATCCAA+GGG 0.567600 6:-3440652 None:intergenic
TGATAGAGAGATTCAAGAGA+TGG 0.573307 6:+3441225 MsG0680030476.01.T01:CDS
ATAGCAGATGTGGACAAGGA+TGG 0.577884 6:+3440956 MsG0680030476.01.T01:CDS
ATAACACAATCTCATAACAT+TGG 0.581534 6:-3442874 None:intergenic
ACTAGTCAGTCATATGTACA+TGG 0.592325 6:+3442727 MsG0680030476.01.T01:exon
TACATATGACTGACTAGTGA+CGG 0.596575 6:-3442722 None:intergenic
GATGTGGACAAGGATGGAAG+TGG 0.608559 6:+3440962 MsG0680030476.01.T01:CDS
TGGATTTGAGATGACAGAAG+AGG 0.613258 6:+3440656 MsG0680030476.01.T01:CDS
ACAACATGCAGATGATCGTG+AGG 0.638119 6:+3442656 MsG0680030476.01.T01:intron
AATGATAGCAGATGTGGACA+AGG 0.645238 6:+3440952 MsG0680030476.01.T01:CDS
TGATCGTGAGGTTGACCCCG+AGG 0.649240 6:+3442668 MsG0680030476.01.T01:CDS
TACTTAGAGGGGAGTCCAGG+AGG 0.655241 6:+3440315 MsG0680030476.01.T01:CDS
TCAGTCATCTATACTTAGAG+GGG 0.660997 6:+3440304 MsG0680030476.01.T01:CDS
AAATAGAGTGAAGCAGACAA+AGG 0.662582 6:-3442760 None:intergenic
TGAATTTGAGCACATGATGA+CGG 0.665935 6:+3441000 MsG0680030476.01.T01:CDS
AGGAGCTGAATGTTGCCATG+AGG 0.727665 6:+3440540 MsG0680030476.01.T01:CDS
TCATCATGACGAATTCCTCG+GGG 0.759865 6:-3442683 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAAATTATATCTTTTTAT+CGG + Chr6:3441588-3441607 MsG0680030476.01.T01:intron 10.0%
!! AAATTAAAACAATAAAAAGG+AGG - Chr6:3440746-3440765 None:intergenic 15.0%
!! AATTAAAACAATAAAAAGGA+GGG - Chr6:3440745-3440764 None:intergenic 15.0%
!!! ATTATGATTTTCTCATATTT+TGG + Chr6:3442560-3442579 MsG0680030476.01.T01:intron 15.0%
!!! TTAATTTTAACATTTAGCTT+TGG + Chr6:3440759-3440778 MsG0680030476.01.T01:intron 15.0%
!! AATTATCAACAATCAAACAT+AGG - Chr6:3442591-3442610 None:intergenic 20.0%
!! ATTAAAACAATAAAAAGGAG+GGG - Chr6:3440744-3440763 None:intergenic 20.0%
!! CAAAAATTATCCTTAAATGA+GGG - Chr6:3441621-3441640 None:intergenic 20.0%
!! TAAAAATATCTCACATACAT+TGG - Chr6:3442618-3442637 None:intergenic 20.0%
!! TAAAGATTAAAGTGAATAAC+AGG + Chr6:3441733-3441752 MsG0680030476.01.T01:intron 20.0%
!! TATAGAACTATAACAAAGAA+TGG - Chr6:3440883-3440902 None:intergenic 20.0%
!!! AGGTATTGTTTTTATTCATA+AGG + Chr6:3440560-3440579 MsG0680030476.01.T01:intron 20.0%
!!! ATATTTTTACGCAACATTTT+TGG + Chr6:3442629-3442648 MsG0680030476.01.T01:intron 20.0%
!!! TAATTTTTGGTCAATATCTT+TGG + Chr6:3441632-3441651 MsG0680030476.01.T01:intron 20.0%
!!! TTTTAGGTAAAATTTAAGTG+TGG - Chr6:3442288-3442307 None:intergenic 20.0%
!!! TTTTGTCTTGATCAATAATA+TGG - Chr6:3441072-3441091 None:intergenic 20.0%
! ACTAAAAAAAAGAGTTACCA+AGG - Chr6:3441287-3441306 None:intergenic 25.0%
! ATAAATTGTGCATTGTTGAT+TGG - Chr6:3442932-3442951 None:intergenic 25.0%
! ATAACACAATCTCATAACAT+TGG - Chr6:3442877-3442896 None:intergenic 25.0%
! CCAAAAATTATCCTTAAATG+AGG - Chr6:3441622-3441641 None:intergenic 25.0%
! GTTAGTCAATATGTAAAGTA+GGG + Chr6:3442050-3442069 MsG0680030476.01.T01:intron 25.0%
! TGAATAAAAACAATACCTCA+TGG - Chr6:3440558-3440577 None:intergenic 25.0%
! TGTTAGTCAATATGTAAAGT+AGG + Chr6:3442049-3442068 MsG0680030476.01.T01:intron 25.0%
! TTTGAATTATTCGATACTGA+TGG + Chr6:3440405-3440424 MsG0680030476.01.T01:CDS 25.0%
!! AAAGTCGAAGTATTACATAA+AGG - Chr6:3440493-3440512 None:intergenic 25.0%
!! AAGTCGAAGTATTACATAAA+GGG - Chr6:3440492-3440511 None:intergenic 25.0%
!! CCTCATTTAAGGATAATTTT+TGG + Chr6:3441619-3441638 MsG0680030476.01.T01:intron 25.0%
!! TAAATTGTGCATTGTTGATT+GGG - Chr6:3442931-3442950 None:intergenic 25.0%
!! TTTACATATTGACTAACATC+AGG - Chr6:3442047-3442066 None:intergenic 25.0%
!!! GTATTTTTGAATGATTACGT+AGG + Chr6:3442000-3442019 MsG0680030476.01.T01:intron 25.0%
AAAGTAGGGTAGGATAATAT+GGG + Chr6:3442064-3442083 MsG0680030476.01.T01:intron 30.0%
AACATACATCTTATCTTTGC+AGG + Chr6:3440628-3440647 MsG0680030476.01.T01:intron 30.0%
AATCATTCAAAAATACCCCT+AGG - Chr6:3441996-3442015 None:intergenic 30.0%
AATTATCCTTAAATGAGGGA+AGG - Chr6:3441617-3441636 None:intergenic 30.0%
AATTTATCGTACAGCAAACA+TGG - Chr6:3442472-3442491 None:intergenic 30.0%
ACATACATCTTATCTTTGCA+GGG + Chr6:3440629-3440648 MsG0680030476.01.T01:intron 30.0%
ATCAGTCATCTATACTTAGA+GGG + Chr6:3440303-3440322 MsG0680030476.01.T01:CDS 30.0%
ATTATCCTTAAATGAGGGAA+GGG - Chr6:3441616-3441635 None:intergenic 30.0%
ATTGCATTATGTAGTGAACT+GGG + Chr6:3441338-3441357 MsG0680030476.01.T01:intron 30.0%
CTAAGTATAGATGACTGATA+CGG - Chr6:3440302-3440321 None:intergenic 30.0%
CTTTCAAAGCAGAAAAATAC+AGG - Chr6:3441443-3441462 None:intergenic 30.0%
GAAGCAAACTAATGATGTAT+AGG - Chr6:3441112-3441131 None:intergenic 30.0%
TAAAGTAGGGTAGGATAATA+TGG + Chr6:3442063-3442082 MsG0680030476.01.T01:intron 30.0%
TATCAGTCATCTATACTTAG+AGG + Chr6:3440302-3440321 MsG0680030476.01.T01:CDS 30.0%
TATTGCATTATGTAGTGAAC+TGG + Chr6:3441337-3441356 MsG0680030476.01.T01:intron 30.0%
TGACTATATTGTGACTTTGA+TGG - Chr6:3440455-3440474 None:intergenic 30.0%
TGAGATATAGAGTGATCTAA+GGG - Chr6:3442253-3442272 None:intergenic 30.0%
TTTAGGTACTATTGATGCTA+AGG + Chr6:3440520-3440539 MsG0680030476.01.T01:intron 30.0%
! ACTGTGGTAACTTACTATTT+TGG - Chr6:3441259-3441278 None:intergenic 30.0%
! AGTCGAAGTATTACATAAAG+GGG - Chr6:3440491-3440510 None:intergenic 30.0%
! CTTCGACTTTGATGAATTTT+AGG + Chr6:3440503-3440522 MsG0680030476.01.T01:intron 30.0%
! TCAAATAAACAAGAGCACAA+AGG - Chr6:3441572-3441591 None:intergenic 30.0%
!! ATTTGCTCAATTTGCTGAAA+TGG - Chr6:3440935-3440954 None:intergenic 30.0%
!! TTCAAACTAAAGTGTTGCAT+CGG + Chr6:3442162-3442181 MsG0680030476.01.T01:intron 30.0%
AAAACAATAAAAAGGAGGGG+TGG - Chr6:3440741-3440760 None:intergenic 35.0%
AAACAATAAAAAGGAGGGGT+GGG - Chr6:3440740-3440759 None:intergenic 35.0%
AAATAGAGTGAAGCAGACAA+AGG - Chr6:3442763-3442782 None:intergenic 35.0%
ACTAGTCAGTCATATGTACA+TGG + Chr6:3442727-3442746 MsG0680030476.01.T01:exon 35.0%
AGTTCAACTAAACCTAACAG+TGG - Chr6:3442371-3442390 None:intergenic 35.0%
ATAAACTATGTGAGACGTAC+AGG - Chr6:3441314-3441333 None:intergenic 35.0%
CAGTGGAAAACAAAGGTAAA+TGG + Chr6:3441698-3441717 MsG0680030476.01.T01:intron 35.0%
GGTAAAATTTAAGTGTGGAG+AGG - Chr6:3442283-3442302 None:intergenic 35.0%
GTCAATATGTAAAGTAGGGT+AGG + Chr6:3442054-3442073 MsG0680030476.01.T01:intron 35.0%
GTCTTATAGGTGGTCTATAA+TGG - Chr6:3442430-3442449 None:intergenic 35.0%
GTGAGATATAGAGTGATCTA+AGG - Chr6:3442254-3442273 None:intergenic 35.0%
TACATATGACTGACTAGTGA+CGG - Chr6:3442725-3442744 None:intergenic 35.0%
TCAGTCATCTATACTTAGAG+GGG + Chr6:3440304-3440323 MsG0680030476.01.T01:CDS 35.0%
TGAATTCCTATCTCCGAATA+AGG - Chr6:3440795-3440814 None:intergenic 35.0%
TGAATTTGAGCACATGATGA+CGG + Chr6:3441000-3441019 MsG0680030476.01.T01:CDS 35.0%
TGAGAGTTAGTGTTTAACCA+TGG + Chr6:3441906-3441925 MsG0680030476.01.T01:intron 35.0%
TGATAGAGAGATTCAAGAGA+TGG + Chr6:3441225-3441244 MsG0680030476.01.T01:CDS 35.0%
TGATTCTCACTGCATATTTG+TGG + Chr6:3441136-3441155 MsG0680030476.01.T01:intron 35.0%
TGCTCACATATGTATACACT+TGG - Chr6:3441680-3441699 None:intergenic 35.0%
TGGTTGTTCTTCTCCTTATT+CGG + Chr6:3440779-3440798 MsG0680030476.01.T01:intron 35.0%
TTACTAGTCAAGGCAGAATA+GGG + Chr6:3441837-3441856 MsG0680030476.01.T01:intron 35.0%
TTCTGTCATCTCAAATCCAA+GGG - Chr6:3440655-3440674 None:intergenic 35.0%
TTGTGCTATGTGCAAATTGT+AGG + Chr6:3442808-3442827 MsG0680030476.01.T01:three_prime_UTR 35.0%
! ACTAAGGTGGAAAGTCTTAT+AGG - Chr6:3442443-3442462 None:intergenic 35.0%
! AGAATAGGGTGCTAATTAGT+TGG + Chr6:3441851-3441870 MsG0680030476.01.T01:intron 35.0%
! GTCGAAGTATTACATAAAGG+GGG - Chr6:3440490-3440509 None:intergenic 35.0%
! GTGGATTATGTATTAGAGAG+AGG - Chr6:3440908-3440927 None:intergenic 35.0%
!! AATTTGCTGAAATGGCATAG+TGG - Chr6:3440927-3440946 None:intergenic 35.0%
!! CATCGGTTTCATAGTTCTTA+CGG + Chr6:3442179-3442198 MsG0680030476.01.T01:intron 35.0%
!! GGTGGAGATATTTTTGCTTT+AGG + Chr6:3441359-3441378 MsG0680030476.01.T01:intron 35.0%
!! TGTTTTATTGTTGAACCTCC+TGG - Chr6:3440333-3440352 None:intergenic 35.0%
!!! ACCTGGCATTTACACTTTTT+TGG + Chr6:3441770-3441789 MsG0680030476.01.T01:intron 35.0%
!!! CCTGGCATTTACACTTTTTT+GGG + Chr6:3441771-3441790 MsG0680030476.01.T01:intron 35.0%
AACAATAAAAAGGAGGGGTG+GGG - Chr6:3440739-3440758 None:intergenic 40.0%
AATGATAGCAGATGTGGACA+AGG + Chr6:3440952-3440971 MsG0680030476.01.T01:CDS 40.0%
AGGTTTACAACCATATCACC+TGG + Chr6:3441753-3441772 MsG0680030476.01.T01:intron 40.0%
AGTCACTATTTCCTACACGA+TGG - Chr6:3441542-3441561 None:intergenic 40.0%
AGTGTAAATGCCAGGTGATA+TGG - Chr6:3441766-3441785 None:intergenic 40.0%
AGTTACCAAGGATATGACTG+TGG - Chr6:3441275-3441294 None:intergenic 40.0%
AGTTACCACAGTCATATCCT+TGG + Chr6:3441267-3441286 MsG0680030476.01.T01:intron 40.0%
ATACGGAAATTGCACGTCAA+GGG - Chr6:3440285-3440304 None:intergenic 40.0%
ATCATCATGACGAATTCCTC+GGG - Chr6:3442687-3442706 None:intergenic 40.0%
ATGTATACACTTGGCAGTAG+TGG - Chr6:3441671-3441690 None:intergenic 40.0%
ATGTGAGCAGTGGAAAACAA+AGG + Chr6:3441691-3441710 MsG0680030476.01.T01:intron 40.0%
ATTCGGAGATAGGAATTCAG+TGG + Chr6:3440796-3440815 MsG0680030476.01.T01:intron 40.0%
CAAAACACATGATGTGGTGT+TGG + Chr6:3441796-3441815 MsG0680030476.01.T01:intron 40.0%
CACTAGTCAGTTACTAGTCA+AGG + Chr6:3441827-3441846 MsG0680030476.01.T01:intron 40.0%
CATCATCATGACGAATTCCT+CGG - Chr6:3442688-3442707 None:intergenic 40.0%
CTTCTGTCATCTCAAATCCA+AGG - Chr6:3440656-3440675 None:intergenic 40.0%
GTGTATACATATGTGAGCAG+TGG + Chr6:3441681-3441700 MsG0680030476.01.T01:intron 40.0%
GTTACTAGTCAAGGCAGAAT+AGG + Chr6:3441836-3441855 MsG0680030476.01.T01:intron 40.0%
TCAGAAGAGACAAGAGATCA+AGG + Chr6:3440377-3440396 MsG0680030476.01.T01:CDS 40.0%
TCTTCTCCTTATTCGGAGAT+AGG + Chr6:3440786-3440805 MsG0680030476.01.T01:intron 40.0%
TGAGCAAATGATAGCAGATG+TGG + Chr6:3440946-3440965 MsG0680030476.01.T01:CDS 40.0%
TGCATATTTGTGGTCATTGC+AGG + Chr6:3441146-3441165 MsG0680030476.01.T01:intron 40.0%
TGGGTACAAAACACATGATG+TGG + Chr6:3441790-3441809 MsG0680030476.01.T01:intron 40.0%
TGTATACACTTGGCAGTAGT+GGG - Chr6:3441670-3441689 None:intergenic 40.0%
TTATTCGATACTGATGGCTC+AGG + Chr6:3440411-3440430 MsG0680030476.01.T01:CDS 40.0%
TTGATCTCTTGTCTCTTCTG+AGG - Chr6:3440378-3440397 None:intergenic 40.0%
! AAACAAGAGCACAAAGGCAA+AGG - Chr6:3441566-3441585 None:intergenic 40.0%
! AAGGTGGAAAGTCTTATAGG+TGG - Chr6:3442440-3442459 None:intergenic 40.0%
! AGTGTCCCTTTCTCCTATTT+TGG - Chr6:3441026-3441045 None:intergenic 40.0%
! CCCAAAAAAGTGTAAATGCC+AGG - Chr6:3441774-3441793 None:intergenic 40.0%
! TGGATTTGAGATGACAGAAG+AGG + Chr6:3440656-3440675 MsG0680030476.01.T01:CDS 40.0%
ACAACATGCAGATGATCGTG+AGG + Chr6:3442656-3442675 MsG0680030476.01.T01:intron 45.0%
AGGAGAAAGGGACACTAAAG+AGG + Chr6:3441030-3441049 MsG0680030476.01.T01:CDS 45.0%
ATAGCAGATGTGGACAAGGA+TGG + Chr6:3440956-3440975 MsG0680030476.01.T01:CDS 45.0%
CAAGCGCATTGCAAAAAGCT+TGG + Chr6:3441190-3441209 MsG0680030476.01.T01:CDS 45.0%
CTAACAGTGGATGCTCTTCA+TGG - Chr6:3442358-3442377 None:intergenic 45.0%
GACGGCCAAAATAGGAGAAA+GGG + Chr6:3441018-3441037 MsG0680030476.01.T01:CDS 45.0%
GATACGGAAATTGCACGTCA+AGG - Chr6:3440286-3440305 None:intergenic 45.0%
GCATTATGTAGTGAACTGGG+TGG + Chr6:3441341-3441360 MsG0680030476.01.T01:intron 45.0%
GTAGGGTAGGATAATATGGG+TGG + Chr6:3442067-3442086 MsG0680030476.01.T01:intron 45.0%
TCATCATGACGAATTCCTCG+GGG - Chr6:3442686-3442705 None:intergenic 45.0%
TGACGGCCAAAATAGGAGAA+AGG + Chr6:3441017-3441036 MsG0680030476.01.T01:CDS 45.0%
! AACATGGACTGCAACTAAGG+TGG - Chr6:3442456-3442475 None:intergenic 45.0%
! ACTAGTGACGGAAGCTTGTT+CGG - Chr6:3442713-3442732 None:intergenic 45.0%
! GATTTTCGGTGGTCATTTGG+TGG - Chr6:3442311-3442330 None:intergenic 45.0%
! GCAAACATGGACTGCAACTA+AGG - Chr6:3442459-3442478 None:intergenic 45.0%
!! CACATGATGACGGCCAAAAT+AGG + Chr6:3441010-3441029 MsG0680030476.01.T01:CDS 45.0%
!! CATGAAGAGCATCCACTGTT+AGG + Chr6:3442356-3442375 MsG0680030476.01.T01:intron 45.0%
!! GGTGGTCATTTGGTGGTTTT+AGG - Chr6:3442304-3442323 None:intergenic 45.0%
!! TTAAAATTAAAACAATAAAA+AGG - Chr6:3440749-3440768 None:intergenic 5.0%
AACATCGTCACCAGACCCAT+AGG - Chr6:3441959-3441978 None:intergenic 50.0%
AGGAGCTGAATGTTGCCATG+AGG + Chr6:3440540-3440559 MsG0680030476.01.T01:CDS 50.0%
ATGACCACCGAAAATCGCCA+TGG + Chr6:3442315-3442334 MsG0680030476.01.T01:intron 50.0%
CTATACTTAGAGGGGAGTCC+AGG + Chr6:3440312-3440331 MsG0680030476.01.T01:CDS 50.0%
GATGTGGACAAGGATGGAAG+TGG + Chr6:3440962-3440981 MsG0680030476.01.T01:CDS 50.0%
TCTTATCTTTGCAGGGCCCT+TGG + Chr6:3440636-3440655 MsG0680030476.01.T01:intron 50.0%
TGCGCGAGTATTCACATCCA+TGG - Chr6:3441926-3441945 None:intergenic 50.0%
TGTTAGCAGAGCCATCGTGT+AGG + Chr6:3441528-3441547 MsG0680030476.01.T01:intron 50.0%
! GGAAAGGCCATGGCGATTTT+CGG - Chr6:3442325-3442344 None:intergenic 50.0%
! GGCGATTTTCGGTGGTCATT+TGG - Chr6:3442314-3442333 None:intergenic 50.0%
CGGCTCCCTTCCCTCATTTA+AGG + Chr6:3441608-3441627 MsG0680030476.01.T01:intron 55.0%
CTGGTCTCATCCTATGGGTC+TGG + Chr6:3441946-3441965 MsG0680030476.01.T01:intron 55.0%
GGATGTGAATACTCGCGCAC+TGG + Chr6:3441927-3441946 MsG0680030476.01.T01:intron 55.0%
GTGGATGCTCTTCATGGTGC+CGG - Chr6:3442352-3442371 None:intergenic 55.0%
TACTTAGAGGGGAGTCCAGG+AGG + Chr6:3440315-3440334 MsG0680030476.01.T01:CDS 55.0%
TGACGATGTTCCGGCAATGG+CGG + Chr6:3441969-3441988 MsG0680030476.01.T01:intron 55.0%
! AAGGCCATGGCGATTTTCGG+TGG - Chr6:3442322-3442341 None:intergenic 55.0%
! GCGCACTGGTCTCATCCTAT+GGG + Chr6:3441941-3441960 MsG0680030476.01.T01:intron 55.0%
! TGGGTCTGGTGACGATGTTC+CGG + Chr6:3441960-3441979 MsG0680030476.01.T01:intron 55.0%
! TGGTGACGATGTTCCGGCAA+TGG + Chr6:3441966-3441985 MsG0680030476.01.T01:intron 55.0%
!! GTCTCTTCTGAGGCGTCAAG+TGG - Chr6:3440368-3440387 None:intergenic 55.0%
TGATCGTGAGGTTGACCCCG+AGG + Chr6:3442668-3442687 MsG0680030476.01.T01:CDS 60.0%
! CGCGCACTGGTCTCATCCTA+TGG + Chr6:3441940-3441959 MsG0680030476.01.T01:intron 60.0%
!! TCATGGTGCCGGCAGAGGAA+AGG - Chr6:3442341-3442360 None:intergenic 60.0%
!! TTCCGGCAATGGCGGACCTA+GGG + Chr6:3441977-3441996 MsG0680030476.01.T01:intron 60.0%
ACCCCTAGGTCCGCCATTGC+CGG - Chr6:3441982-3442001 None:intergenic 65.0%
CGCCATGGCCTTTCCTCTGC+CGG + Chr6:3442330-3442349 MsG0680030476.01.T01:intron 65.0%
TGCCGGCAGAGGAAAGGCCA+TGG - Chr6:3442335-3442354 None:intergenic 65.0%
!! GCTCTTCATGGTGCCGGCAG+AGG - Chr6:3442346-3442365 None:intergenic 65.0%
!! GTTCCGGCAATGGCGGACCT+AGG + Chr6:3441976-3441995 MsG0680030476.01.T01:intron 65.0%
!! TCCGGCAATGGCGGACCTAG+GGG + Chr6:3441978-3441997 MsG0680030476.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 3440285 3442955 3440285 ID=MsG0680030476.01;Name=MsG0680030476.01
Chr6 mRNA 3440285 3442955 3440285 ID=MsG0680030476.01.T01;Parent=MsG0680030476.01;Name=MsG0680030476.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0.8|0.66|1|0.6|0.5|6|224|173
Chr6 exon 3440285 3440432 3440285 ID=MsG0680030476.01.T01:exon:3316;Parent=MsG0680030476.01.T01
Chr6 exon 3440525 3440561 3440525 ID=MsG0680030476.01.T01:exon:3317;Parent=MsG0680030476.01.T01
Chr6 exon 3440650 3440677 3440650 ID=MsG0680030476.01.T01:exon:3318;Parent=MsG0680030476.01.T01
Chr6 exon 3440941 3441093 3440941 ID=MsG0680030476.01.T01:exon:3319;Parent=MsG0680030476.01.T01
Chr6 exon 3441173 3441263 3441173 ID=MsG0680030476.01.T01:exon:3320;Parent=MsG0680030476.01.T01
Chr6 exon 3442667 3442955 3442667 ID=MsG0680030476.01.T01:exon:3321;Parent=MsG0680030476.01.T01
Chr6 CDS 3440285 3440432 3440285 ID=MsG0680030476.01.T01:cds;Parent=MsG0680030476.01.T01
Chr6 CDS 3440525 3440561 3440525 ID=MsG0680030476.01.T01:cds;Parent=MsG0680030476.01.T01
Chr6 CDS 3440650 3440677 3440650 ID=MsG0680030476.01.T01:cds;Parent=MsG0680030476.01.T01
Chr6 CDS 3440941 3441093 3440941 ID=MsG0680030476.01.T01:cds;Parent=MsG0680030476.01.T01
Chr6 CDS 3441173 3441263 3441173 ID=MsG0680030476.01.T01:cds;Parent=MsG0680030476.01.T01
Chr6 CDS 3442667 3442731 3442667 ID=MsG0680030476.01.T01:cds;Parent=MsG0680030476.01.T01
Chr6 three_prime_UTR 3442732 3442955 3442732 ID=MsG0680030476.01.T01:three_prime_utr;Parent=MsG0680030476.01.T01
Gene Sequence

>MsG0680030476.01.T01

TTGACGTGCAATTTCCGTATCAGTCATCTATACTTAGAGGGGAGTCCAGGAGGTTCAACAATAAAACAAAGAGCTCGACACCACTTGACGCCTCAGAAGAGACAAGAGATCAAGGAAGCTTTTGAATTATTCGATACTGATGGCTCAGGTACTATTGATGCTAAGGAGCTGAATGTTGCCATGAGGGCCCTTGGATTTGAGATGACAGAAGAGCAAATTGAGCAAATGATAGCAGATGTGGACAAGGATGGAAGTGGAGCAATCGACTATGATGAATTTGAGCACATGATGACGGCCAAAATAGGAGAAAGGGACACTAAAGAGGAGCTCATGAAAGCTTTCCATATTATTGATCAAGACAAAAATATATCTGCAACAGACATCAAGCGCATTGCAAAAAGCTTGGTGAAAATTTCACTGATAGAGAGATTCAAGAGATGGTTGAAGAACCAAAATAATGATCGTGAGGTTGACCCCGAGGAATTCGTCATGATGATGAACCGAACAAGCTTCCGTCACTAG

Protein sequence

>MsG0680030476.01.T01

LTCNFRISHLYLEGSPGGSTIKQRARHHLTPQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQIEQMIADVDKDGSGAIDYDEFEHMMTAKIGERDTKEELMKAFHIIDQDKNISATDIKRIAKSLVKISLIERFKRWLKNQNNDREVDPEEFVMMMNRTSFRH*