AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005990.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005990.01.T01 MTR_1g111390 88.546 227 6 1 49 255 1 227 1.21e-128 363
MsG0180005990.01.T01 MTR_7g079850 36.052 233 116 2 39 251 59 278 1.18e-35 128
MsG0180005990.01.T01 MTR_1g046730 36.000 225 102 7 55 251 151 361 2.24e-26 105
MsG0180005990.01.T01 MTR_5g009810 30.455 220 125 5 48 247 131 342 3.44e-16 77.4
MsG0180005990.01.T01 MTR_6g034845 87.500 32 4 0 2 33 3 34 8.57e-13 64.7
MsG0180005990.01.T01 MTR_1g064310 84.848 33 5 0 1 33 1 33 1.42e-12 62.4
MsG0180005990.01.T01 MTR_3g066050 84.848 33 5 0 1 33 1 33 1.49e-12 63.2
MsG0180005990.01.T01 MTR_3g024230 74.286 35 9 0 1 35 1 35 8.89e-12 60.1
MsG0180005990.01.T01 MTR_8g028915 81.818 33 6 0 1 33 3 35 1.38e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005990.01.T01 AT1G25520 68.996 229 50 2 49 256 1 229 3.61e-96 281
MsG0180005990.01.T01 AT1G68650 67.982 228 52 2 49 256 1 227 2.03e-94 277
MsG0180005990.01.T01 AT5G36290 35.776 232 111 3 43 251 72 288 1.06e-35 129
MsG0180005990.01.T01 AT5G36290 35.776 232 111 3 43 251 72 288 1.06e-35 129
MsG0180005990.01.T01 AT4G13590 35.965 228 98 6 55 251 145 355 1.76e-28 111
MsG0180005990.01.T01 AT4G13590 35.965 228 98 6 55 251 145 355 1.93e-28 111
MsG0180005990.01.T01 AT1G64150 29.661 236 105 5 48 247 151 361 4.68e-17 80.1

Find 93 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTACATTAATTAAATT+TGG 0.066790 1:-98565645 None:intergenic
TAAACCATAGACTCTTTAAA+AGG 0.225221 1:-98565590 None:intergenic
TCCTTGAAAGAGGCTATATT+TGG 0.236172 1:+98563615 MsG0180005990.01.T01:CDS
TTTCTCTCCCATCTTGTTAC+AGG 0.249070 1:+98564462 MsG0180005990.01.T01:CDS
GGTGGAAAGGCAAGCTCTTT+TGG 0.271380 1:-98565540 None:intergenic
TTCTCTCTGTTCTTGTTGGT+TGG 0.281934 1:+98563283 MsG0180005990.01.T01:CDS
AACCCATTTGGCGTGGTTCT+TGG 0.294089 1:+98564741 MsG0180005990.01.T01:CDS
TGTACTTCTGCTGCTGTTAT+CGG 0.295744 1:+98565052 MsG0180005990.01.T01:CDS
ATCCCCGTCCCCGACGGGTT+CGG 0.302242 1:-98560943 None:intergenic
AAAAGAATGCTCACCAGATT+TGG 0.305070 1:-98563312 None:intergenic
ATTACGACGTTCTTATTCTT+CGG 0.306446 1:+98563579 MsG0180005990.01.T01:CDS
TCCCCGTCCCCGACGGGTTC+GGG 0.307080 1:-98560942 None:intergenic
TTCCTACATTAATTAAATTT+GGG 0.308143 1:-98565644 None:intergenic
ACAATTCTCTCTGTTCTTGT+TGG 0.313902 1:+98563279 MsG0180005990.01.T01:CDS
ATGTGAAAGTTAGCATAAAA+AGG 0.316458 1:+98565791 MsG0180005990.01.T01:three_prime_UTR
TGGTTGGGCTGCTCCAAATC+TGG 0.336034 1:+98563299 MsG0180005990.01.T01:CDS
TCTCTCTGTTCTTGTTGGTT+GGG 0.349163 1:+98563284 MsG0180005990.01.T01:CDS
TTGCAGTAACGGATTCTCTA+TGG 0.349576 1:+98565698 MsG0180005990.01.T01:three_prime_UTR
ATTTGGCAGGTTGGACTCTC+AGG 0.356838 1:+98565367 MsG0180005990.01.T01:intron
TTACGACGTTCTTATTCTTC+GGG 0.364759 1:+98563580 MsG0180005990.01.T01:CDS
AATTAATGTAGGAAGTTGAT+TGG 0.364857 1:+98565653 MsG0180005990.01.T01:three_prime_UTR
ATTGTAATTAGGACAAAGAT+TGG 0.389163 1:+98563862 MsG0180005990.01.T01:intron
TATTCTTCGGGTTTGGACTT+TGG 0.392999 1:+98563592 MsG0180005990.01.T01:CDS
AGAGCTTGCCTTTCCACCTT+GGG 0.393106 1:+98565545 MsG0180005990.01.T01:three_prime_UTR
CCTCCAAGAACCACGCCAAA+TGG 0.394458 1:-98564744 None:intergenic
CGGGAATACCCGAACCCGTC+GGG 0.394680 1:+98560934 MsG0180005990.01.T01:CDS
ACGTTCTTATTCTTCGGGTT+TGG 0.403780 1:+98563585 MsG0180005990.01.T01:CDS
ATTGGTTAGTGATTATTCTC+AGG 0.408301 1:+98565458 MsG0180005990.01.T01:three_prime_UTR
TACCCGAACCCGTCGGGGAC+GGG 0.411699 1:+98560940 MsG0180005990.01.T01:CDS
TTCAATTTCTCATCCCCGTT+GGG 0.414248 1:+98560970 MsG0180005990.01.T01:CDS
GGCTGAAGTTGAAGCTGAAC+TGG 0.424673 1:+98563772 MsG0180005990.01.T01:CDS
TGCGGGAACGGGGATGGGTC+GGG 0.427728 1:+98560915 None:intergenic
TTACCCTGCTCATACCCAAC+GGG 0.428376 1:-98560984 None:intergenic
TCCAAATATAGCCTCTTTCA+AGG 0.428412 1:-98563616 None:intergenic
AGCTACAAAAGATACCAAAA+AGG 0.435268 1:+98563899 MsG0180005990.01.T01:CDS
CTTGTTACAGTGGTTGAGAT+TGG 0.435916 1:+98565514 MsG0180005990.01.T01:three_prime_UTR
GCTGCAGATGAAAACCCATT+TGG 0.436487 1:+98564729 MsG0180005990.01.T01:CDS
ACCCGAACCCGTCGGGGACG+GGG 0.439265 1:+98560941 MsG0180005990.01.T01:CDS
TTGGGTATGAGCAGGGTAAT+GGG 0.453050 1:+98560988 MsG0180005990.01.T01:CDS
TTATGCAGATCTCTCGTAGT+TGG 0.455915 1:+98563547 MsG0180005990.01.T01:intron
AATGATGAAGTCTATGCTAT+TGG 0.459214 1:+98565440 MsG0180005990.01.T01:exon
CATCCCCGTTGGGTATGAGC+AGG 0.465043 1:+98560980 MsG0180005990.01.T01:CDS
AAGAGCTTGCCTTTCCACCT+TGG 0.467866 1:+98565544 MsG0180005990.01.T01:three_prime_UTR
TATGCAGATCTCTCGTAGTT+GGG 0.473253 1:+98563548 MsG0180005990.01.T01:intron
AAACCATAGACTCTTTAAAA+GGG 0.476907 1:-98565589 None:intergenic
GTTGGGTATGAGCAGGGTAA+TGG 0.477527 1:+98560987 MsG0180005990.01.T01:CDS
CGACTGAAGAAAGGAATGAT+TGG 0.477906 1:-98565417 None:intergenic
CCATTTGGCGTGGTTCTTGG+AGG 0.480629 1:+98564744 MsG0180005990.01.T01:CDS
ACTGCAAGTACGTGTTGAAA+AGG 0.483032 1:-98565682 None:intergenic
TTCATCTGCAGCTAAACCTA+TGG 0.483168 1:-98564718 None:intergenic
ATTTATTACCTGTAACAAGA+TGG 0.486365 1:-98564470 None:intergenic
CATTTGGCGTGGTTCTTGGA+GGG 0.488586 1:+98564745 MsG0180005990.01.T01:CDS
ATGCGGGAACGGGGATGGGT+CGG 0.491760 1:+98560914 None:intergenic
TTTGTTCAGTTGGCTACCAT+AGG 0.495409 1:+98564702 MsG0180005990.01.T01:intron
TGGACTTTGGTCCTTGAAAG+AGG 0.497549 1:+98563605 MsG0180005990.01.T01:CDS
CTCCAAGAACCACGCCAAAT+GGG 0.499798 1:-98564743 None:intergenic
AAATATGAGCTCAATTGTTC+AGG 0.500477 1:+98562384 MsG0180005990.01.T01:CDS
TTTATTACCTGTAACAAGAT+GGG 0.502150 1:-98564469 None:intergenic
GGACAGGGAATCAGAGGAGT+TGG 0.506438 1:+98563751 MsG0180005990.01.T01:intron
ATGGGTAAGTATATGAGAAT+CGG 0.508877 1:+98561006 MsG0180005990.01.T01:CDS
ATCTCATCCCCGTCCCCGAC+GGG 0.509562 1:-98560948 None:intergenic
TCAACACGTACTTGCAGTAA+CGG 0.514939 1:+98565687 MsG0180005990.01.T01:three_prime_UTR
TTCATCATTCGACTGAAGAA+AGG 0.517530 1:-98565426 None:intergenic
ATACCCGAACCCGTCGGGGA+CGG 0.520515 1:+98560939 MsG0180005990.01.T01:CDS
AAAGAGGCTATATTTGGAGA+AGG 0.530172 1:+98563621 MsG0180005990.01.T01:CDS
AATCTCATCCCCGTCCCCGA+CGG 0.535690 1:-98560949 None:intergenic
AAGAGGCTATATTTGGAGAA+GGG 0.538449 1:+98563622 MsG0180005990.01.T01:CDS
TGCAGTAACGGATTCTCTAT+GGG 0.542097 1:+98565699 MsG0180005990.01.T01:three_prime_UTR
ATTCAATTTCTCATCCCCGT+TGG 0.544566 1:+98560969 MsG0180005990.01.T01:CDS
GACCCAAATTTAATTAATGT+AGG 0.546688 1:+98565642 MsG0180005990.01.T01:three_prime_UTR
AGCTTTGACCCAAGGTGGAA+AGG 0.549201 1:-98565553 None:intergenic
AGCAAACATGCTTGTTACAG+TGG 0.556245 1:+98565504 MsG0180005990.01.T01:three_prime_UTR
TGAATGGGGTGACAAGAGCC+AGG 0.563011 1:+98564593 MsG0180005990.01.T01:CDS
ATTTCACACAACCCCTGTCA+AGG 0.564235 1:-98565763 None:intergenic
TTAAGTGTAGGCACATGGAA+TGG 0.568804 1:-98565816 None:intergenic
TTTGATGGACAGGGAATCAG+AGG 0.572662 1:+98563745 MsG0180005990.01.T01:intron
TCGGGAATACCCGAACCCGT+CGG 0.575297 1:+98560933 MsG0180005990.01.T01:CDS
TAATTAGGACAAAGATTGGA+AGG 0.578900 1:+98563866 MsG0180005990.01.T01:intron
ACTTCTGCTGCTGTTATCGG+AGG 0.588680 1:+98565055 MsG0180005990.01.T01:CDS
GATCTCAGAGAGAACGGTCA+TGG 0.590501 1:-98562521 None:intergenic
ATGACCGTTCTCTCTGAGAT+CGG 0.592001 1:+98562523 MsG0180005990.01.T01:CDS
ATTACCCTGCTCATACCCAA+CGG 0.600398 1:-98560985 None:intergenic
AGAATGAAAGCTTTGACCCA+AGG 0.600986 1:-98565561 None:intergenic
ATGAAAGCTTTGACCCAAGG+TGG 0.611430 1:-98565558 None:intergenic
ATCACCGATCTCAGAGAGAA+CGG 0.615665 1:-98562527 None:intergenic
TGGCAGGTTGGACTCTCAGG+TGG 0.615800 1:+98565370 MsG0180005990.01.T01:intron
AGAGGTTAAGTGTAGGCACA+TGG 0.620341 1:-98565821 None:intergenic
CTTCTGCTGCTGTTATCGGA+GGG 0.621384 1:+98565056 MsG0180005990.01.T01:CDS
TTTCACACAACCCCTGTCAA+GGG 0.622813 1:-98565762 None:intergenic
ATCCCCGTTGGGTATGAGCA+GGG 0.631132 1:+98560981 MsG0180005990.01.T01:CDS
AGATGAAAACCCATTTGGCG+TGG 0.640914 1:+98564734 MsG0180005990.01.T01:CDS
GGGAATACCCGAACCCGTCG+GGG 0.652240 1:+98560935 MsG0180005990.01.T01:CDS
TACCCTGCTCATACCCAACG+GGG 0.747828 1:-98560983 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTTTACTTATAATTT+AGG + Chr1:98562058-98562077 MsG0180005990.01.T01:intron 10.0%
!!! TTTTTTTTTTGCTTATAATT+GGG - Chr1:98561541-98561560 None:intergenic 10.0%
!!! TTTTTTTTTTTGCTTATAAT+TGG - Chr1:98561542-98561561 None:intergenic 10.0%
!! AATTATTAGTTGTTTATTAC+AGG + Chr1:98565017-98565036 MsG0180005990.01.T01:intron 15.0%
!! ATTATTAGTTGTTTATTACA+GGG + Chr1:98565018-98565037 MsG0180005990.01.T01:intron 15.0%
!! ATTCATTAAATGATGTATTT+GGG + Chr1:98561612-98561631 MsG0180005990.01.T01:intron 15.0%
!! CAATTAATATTTAATTACTG+TGG + Chr1:98562175-98562194 MsG0180005990.01.T01:intron 15.0%
!! GAAATTACTTGAATTAAAAA+AGG - Chr1:98565186-98565205 None:intergenic 15.0%
!! TAAATGATTAAGGTTATTAT+AGG + Chr1:98561346-98561365 MsG0180005990.01.T01:intron 15.0%
!! TTCCTACATTAATTAAATTT+GGG - Chr1:98565647-98565666 None:intergenic 15.0%
!! TTGATTTATTTATTGAGATT+CGG + Chr1:98562110-98562129 MsG0180005990.01.T01:intron 15.0%
!! TTTGTTTATAATATGAAACA+AGG + Chr1:98561926-98561945 MsG0180005990.01.T01:intron 15.0%
!!! AATGAAGTATTAAATGATTA+AGG + Chr1:98561336-98561355 MsG0180005990.01.T01:intron 15.0%
!!! ATTCATTTTGATTTTGATTA+GGG + Chr1:98562481-98562500 MsG0180005990.01.T01:intron 15.0%
!!! TAAGCAAAAAACAATTTTTT+AGG - Chr1:98561664-98561683 None:intergenic 15.0%
!!! TATTCATTTTGATTTTGATT+AGG + Chr1:98562480-98562499 MsG0180005990.01.T01:intron 15.0%
!!! TTTCATTTTCTTGTATATAT+TGG + Chr1:98564637-98564656 MsG0180005990.01.T01:intron 15.0%
!!! TTTTTTTTTGCTTATAATTG+GGG - Chr1:98561540-98561559 None:intergenic 15.0%
!! AAAAACAAAGATAACAAATC+TGG - Chr1:98563201-98563220 None:intergenic 20.0%
!! AAACAGAAAATGAAAAAATG+AGG - Chr1:98562434-98562453 None:intergenic 20.0%
!! AACTTATTCATACTTTGAAT+AGG + Chr1:98564205-98564224 MsG0180005990.01.T01:intron 20.0%
!! AATAGCATGAAAATCAATAA+GGG - Chr1:98563529-98563548 None:intergenic 20.0%
!! AATTAAATTAACGTGTGTTA+AGG + Chr1:98561149-98561168 MsG0180005990.01.T01:intron 20.0%
!! AGAAAAATATTTCGAGAAAA+TGG + Chr1:98561105-98561124 MsG0180005990.01.T01:intron 20.0%
!! AGATAACAAATATATCAAAC+AGG + Chr1:98562975-98562994 MsG0180005990.01.T01:intron 20.0%
!! AGTAAATGAAAAAGAAGTAA+TGG + Chr1:98565229-98565248 MsG0180005990.01.T01:intron 20.0%
!! ATCAAAGAAAAAAGATAATG+CGG - Chr1:98563501-98563520 None:intergenic 20.0%
!! ATGATTTATGAATGAATGAA+TGG - Chr1:98562260-98562279 None:intergenic 20.0%
!! ATTAAGGTTATTATAGGAAA+AGG + Chr1:98561352-98561371 MsG0180005990.01.T01:intron 20.0%
!! ATTACTTGAATTAAAAAAGG+TGG - Chr1:98565183-98565202 None:intergenic 20.0%
!! ATTCAGTTACAATTCATTAT+TGG + Chr1:98562764-98562783 MsG0180005990.01.T01:intron 20.0%
!! CAAATATATCTTTAACCATT+TGG - Chr1:98564111-98564130 None:intergenic 20.0%
!! CAAATGGTTAAAGATATATT+TGG + Chr1:98564109-98564128 MsG0180005990.01.T01:intron 20.0%
!! CATTCAATAAATGATGTATT+TGG - Chr1:98561639-98561658 None:intergenic 20.0%
!! CATTCATTAAATGATGTATT+TGG + Chr1:98561611-98561630 MsG0180005990.01.T01:intron 20.0%
!! CTTCCTACATTAATTAAATT+TGG - Chr1:98565648-98565667 None:intergenic 20.0%
!! CTTGTAAAATTTCGAATTAT+AGG + Chr1:98563251-98563270 MsG0180005990.01.T01:intron 20.0%
!! GATGTAAAAACAATTTGTAT+TGG + Chr1:98561786-98561805 MsG0180005990.01.T01:intron 20.0%
!! TAAATATCTAAGGGTAATAT+AGG - Chr1:98561294-98561313 None:intergenic 20.0%
!! TAATAGCATGAAAATCAATA+AGG - Chr1:98563530-98563549 None:intergenic 20.0%
!! TATGAAACTTAATTATTCCA+AGG - Chr1:98561760-98561779 None:intergenic 20.0%
!! TATGACAAATAATGTGTATT+AGG - Chr1:98564387-98564406 None:intergenic 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + Chr1:98561432-98561451 MsG0180005990.01.T01:intron 20.0%
!! TCTCTACAATAAATATCTAA+GGG - Chr1:98561303-98561322 None:intergenic 20.0%
!! TGTAAAAGTGACAATTATAA+AGG - Chr1:98561207-98561226 None:intergenic 20.0%
!! TTAAAAAAGGTGGAAAAAAA+AGG - Chr1:98565173-98565192 None:intergenic 20.0%
!! TTATTAGTTGTTTATTACAG+GGG + Chr1:98565019-98565038 MsG0180005990.01.T01:intron 20.0%
!! TTCATTAGAAATGTATAATC+AGG - Chr1:98563674-98563693 None:intergenic 20.0%
!! TTCGTAATAAATTCATTTGA+TGG + Chr1:98563730-98563749 MsG0180005990.01.T01:intron 20.0%
!!! AGTAGACAAAATATTTTCTA+TGG - Chr1:98564070-98564089 None:intergenic 20.0%
!!! CATTATTTGTCATATTTTTC+AGG + Chr1:98564393-98564412 MsG0180005990.01.T01:intron 20.0%
!!! CTATAATTCGAAATTTTACA+AGG - Chr1:98563253-98563272 None:intergenic 20.0%
!!! GGAATTCTTTTTATTGTTTT+TGG + Chr1:98565391-98565410 MsG0180005990.01.T01:CDS 20.0%
!!! TAACTTTTTTTTTGTTCAGT+TGG + Chr1:98564692-98564711 MsG0180005990.01.T01:intron 20.0%
!!! TAAGCAAAAAACAACTTTTT+AGG + Chr1:98561586-98561605 MsG0180005990.01.T01:intron 20.0%
!!! TATCTTTGTTTTTAAAGTAG+TGG + Chr1:98563208-98563227 MsG0180005990.01.T01:intron 20.0%
!!! TCAAAAAATCATCTTTTTCA+AGG - Chr1:98561871-98561890 None:intergenic 20.0%
!!! TTCTCGAAATATTTTTCTTA+GGG - Chr1:98561103-98561122 None:intergenic 20.0%
!!! TTTCTCGAAATATTTTTCTT+AGG - Chr1:98561104-98561123 None:intergenic 20.0%
! AAAAAAAATCATAGTCCTTC+CGG + Chr1:98561554-98561573 MsG0180005990.01.T01:intron 25.0%
! AAAAAGGTGACAAAAACATA+TGG - Chr1:98565157-98565176 None:intergenic 25.0%
! AAATGTTGAATACAGCATTT+AGG - Chr1:98565351-98565370 None:intergenic 25.0%
! AACAAATATATCAAACAGGA+AGG + Chr1:98562979-98562998 MsG0180005990.01.T01:intron 25.0%
! AAGTGAAAAGGAATCAAATT+TGG - Chr1:98564539-98564558 None:intergenic 25.0%
! AAGTGACAATTATAAAGGAA+CGG - Chr1:98561202-98561221 None:intergenic 25.0%
! AATGAGGTGAAATAATTGAT+AGG - Chr1:98562418-98562437 None:intergenic 25.0%
! ACAAATATATCAAACAGGAA+GGG + Chr1:98562980-98562999 MsG0180005990.01.T01:intron 25.0%
! ATGCCACAAAAAAACATAAA+CGG + Chr1:98564422-98564441 MsG0180005990.01.T01:CDS 25.0%
! ATGTGAAAGTTAGCATAAAA+AGG + Chr1:98565791-98565810 MsG0180005990.01.T01:three_prime_UTR 25.0%
! ATGTGACAATTAAAAAGGAA+CGG + Chr1:98561437-98561456 MsG0180005990.01.T01:intron 25.0%
! ATTCTAATTTACTACACTAC+TGG + Chr1:98565298-98565317 MsG0180005990.01.T01:intron 25.0%
! ATTGTAATTAGGACAAAGAT+TGG + Chr1:98563862-98563881 MsG0180005990.01.T01:intron 25.0%
! ATTTATTACCTGTAACAAGA+TGG - Chr1:98564473-98564492 None:intergenic 25.0%
! CATAATTCCTAAAATTGAAG+GGG + Chr1:98562869-98562888 MsG0180005990.01.T01:intron 25.0%
! CTCTCTACAATAAATATCTA+AGG - Chr1:98561304-98561323 None:intergenic 25.0%
! GAAAATAGTCATAATCTTGA+AGG - Chr1:98564831-98564850 None:intergenic 25.0%
! GAATTCAGTTAAATATTGCA+TGG - Chr1:98564507-98564526 None:intergenic 25.0%
! GACCCAAATTTAATTAATGT+AGG + Chr1:98565642-98565661 MsG0180005990.01.T01:three_prime_UTR 25.0%
! GAGAAAAACTGAGATAAAAA+TGG - Chr1:98564448-98564467 None:intergenic 25.0%
! GAGTTTCAATTTCCAATATT+AGG + Chr1:98562821-98562840 MsG0180005990.01.T01:intron 25.0%
! GCATAATTCCTAAAATTGAA+GGG + Chr1:98562868-98562887 MsG0180005990.01.T01:intron 25.0%
! TAAACCATAGACTCTTTAAA+AGG - Chr1:98565593-98565612 None:intergenic 25.0%
! TAAATGCTGTATTCAACATT+TGG + Chr1:98565350-98565369 MsG0180005990.01.T01:intron 25.0%
! TATTAGTTGTTTATTACAGG+GGG + Chr1:98565020-98565039 MsG0180005990.01.T01:intron 25.0%
! TCAAAGAAAAAAGATAATGC+GGG - Chr1:98563500-98563519 None:intergenic 25.0%
! TCAGCATGAGTATATATTAT+AGG + Chr1:98563454-98563473 MsG0180005990.01.T01:intron 25.0%
! TGCATAATTCCTAAAATTGA+AGG + Chr1:98562867-98562886 MsG0180005990.01.T01:intron 25.0%
! TGTGATATTTGATTACCAAA+TGG + Chr1:98564093-98564112 MsG0180005990.01.T01:intron 25.0%
! TTGTCCTAATTACAATACAA+GGG - Chr1:98563858-98563877 None:intergenic 25.0%
! TTTATTACCTGTAACAAGAT+GGG - Chr1:98564472-98564491 None:intergenic 25.0%
! TTTGTCCTAATTACAATACA+AGG - Chr1:98563859-98563878 None:intergenic 25.0%
!! AAACCATAGACTCTTTAAAA+GGG - Chr1:98565592-98565611 None:intergenic 25.0%
!! AATAAATTCATTTGATGGAC+AGG + Chr1:98563735-98563754 MsG0180005990.01.T01:intron 25.0%
!! AATTAATGTAGGAAGTTGAT+TGG + Chr1:98565653-98565672 MsG0180005990.01.T01:three_prime_UTR 25.0%
!! AGATTATGACTATTTTCCTT+TGG + Chr1:98564834-98564853 MsG0180005990.01.T01:intron 25.0%
!! ATAAATTCATTTGATGGACA+GGG + Chr1:98563736-98563755 MsG0180005990.01.T01:intron 25.0%
!! TCTCGAAATATTTTTCTTAG+GGG - Chr1:98561102-98561121 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + Chr1:98561674-98561693 MsG0180005990.01.T01:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - Chr1:98561693-98561674 None:intergenic 25.0%
!!! AGTAAAAGTATTTGTTGTCT+TGG + Chr1:98561396-98561415 MsG0180005990.01.T01:intron 25.0%
!!! ATAGTTTTTTGTGTTATCCT+TGG + Chr1:98561740-98561759 MsG0180005990.01.T01:intron 25.0%
!!! CAGGTATTATTTTACCTTTT+TGG - Chr1:98563916-98563935 None:intergenic 25.0%
!!! GCATTTTCTATCACTTTTTT+TGG + Chr1:98564570-98564589 MsG0180005990.01.T01:CDS 25.0%
!!! GTTGGTTTTTCAACATTATT+TGG + Chr1:98563794-98563813 MsG0180005990.01.T01:intron 25.0%
!!! TATCACTTTTTTTGGTGAAT+GGG + Chr1:98564578-98564597 MsG0180005990.01.T01:CDS 25.0%
!!! TGAATAGTTATTGAGTTGAT+TGG - Chr1:98562693-98562712 None:intergenic 25.0%
AAAAGGAATCAAATTTGGCA+TGG - Chr1:98564534-98564553 None:intergenic 30.0%
AAAGATTGGAAGGCTAAAAA+TGG + Chr1:98563876-98563895 MsG0180005990.01.T01:CDS 30.0%
AAATATGAGCTCAATTGTTC+AGG + Chr1:98562384-98562403 MsG0180005990.01.T01:CDS 30.0%
AACACCCTTGTATTGTAATT+AGG + Chr1:98563851-98563870 MsG0180005990.01.T01:intron 30.0%
AATGATGAAGTCTATGCTAT+TGG + Chr1:98565440-98565459 MsG0180005990.01.T01:exon 30.0%
AGCCACATTTAATGATACAT+TGG - Chr1:98561268-98561287 None:intergenic 30.0%
AGCTACAAAAGATACCAAAA+AGG + Chr1:98563899-98563918 MsG0180005990.01.T01:CDS 30.0%
ATAGACAACACACCTAATAT+TGG - Chr1:98562836-98562855 None:intergenic 30.0%
ATGGGTAAGTATATGAGAAT+CGG + Chr1:98561006-98561025 MsG0180005990.01.T01:CDS 30.0%
ATTACGACGTTCTTATTCTT+CGG + Chr1:98563579-98563598 MsG0180005990.01.T01:CDS 30.0%
ATTGGTTAGTGATTATTCTC+AGG + Chr1:98565458-98565477 MsG0180005990.01.T01:three_prime_UTR 30.0%
CAAATCTGGAAAAGAAAGAA+AGG - Chr1:98563187-98563206 None:intergenic 30.0%
CAGCACAGATTTAATTAAAC+AGG - Chr1:98563935-98563954 None:intergenic 30.0%
CTATACTCTGAATTTGTGAT+CGG + Chr1:98562150-98562169 MsG0180005990.01.T01:intron 30.0%
GAATAGATGCAACAATTTCT+AGG + Chr1:98565263-98565282 MsG0180005990.01.T01:intron 30.0%
GTCCAATGTATCATTAAATG+TGG + Chr1:98561263-98561282 MsG0180005990.01.T01:intron 30.0%
GTGAAATTGTTACCAGTTAA+GGG - Chr1:98562314-98562333 None:intergenic 30.0%
GTTAATGAAGAAACAAATGC+AGG - Chr1:98564863-98564882 None:intergenic 30.0%
TAAGAAATTTGTAGCACCTT+AGG - Chr1:98564985-98565004 None:intergenic 30.0%
TAAGTATATGAGAATCGGTA+TGG + Chr1:98561011-98561030 MsG0180005990.01.T01:intron 30.0%
TAATTAGGACAAAGATTGGA+AGG + Chr1:98563866-98563885 MsG0180005990.01.T01:intron 30.0%
TGATGCTTATTTCAAGATAC+TGG + Chr1:98563066-98563085 MsG0180005990.01.T01:intron 30.0%
TGCTACAAATTTCTTAGAAG+AGG + Chr1:98564989-98565008 MsG0180005990.01.T01:intron 30.0%
TGTGAAATTGTTACCAGTTA+AGG - Chr1:98562315-98562334 None:intergenic 30.0%
TTGAGGTGGGAAAATAAATA+AGG - Chr1:98562602-98562621 None:intergenic 30.0%
! AGAAGTAATGGAAAACTTGA+TGG + Chr1:98565241-98565260 MsG0180005990.01.T01:intron 30.0%
! AGTAGTGCAATTGAAGATTT+TGG - Chr1:98564262-98564281 None:intergenic 30.0%
! ATCTCAGATTTCTGAAAAAG+TGG + Chr1:98565090-98565109 MsG0180005990.01.T01:CDS 30.0%
! ATTATCACCCCTTCAATTTT+AGG - Chr1:98562879-98562898 None:intergenic 30.0%
! TTTTTGCTTATAATTGGGGA+CGG - Chr1:98561536-98561555 None:intergenic 30.0%
!! GTATAATCAGGTTGATATGA+GGG - Chr1:98563662-98563681 None:intergenic 30.0%
!! TGATGATTCTGAAGTTAAAC+CGG - Chr1:98563341-98563360 None:intergenic 30.0%
!! TGTATAATCAGGTTGATATG+AGG - Chr1:98563663-98563682 None:intergenic 30.0%
!! TTTATTGAGATTCGGTGAAA+CGG + Chr1:98562118-98562137 MsG0180005990.01.T01:intron 30.0%
!!! ATCACTTTTTTTGGTGAATG+GGG + Chr1:98564579-98564598 MsG0180005990.01.T01:CDS 30.0%
!!! CTATCACTTTTTTTGGTGAA+TGG + Chr1:98564577-98564596 MsG0180005990.01.T01:CDS 30.0%
AAAAGAATGCTCACCAGATT+TGG - Chr1:98563315-98563334 None:intergenic 35.0%
AAAGAGGCTATATTTGGAGA+AGG + Chr1:98563621-98563640 MsG0180005990.01.T01:CDS 35.0%
AAGAGGCTATATTTGGAGAA+GGG + Chr1:98563622-98563641 MsG0180005990.01.T01:CDS 35.0%
ACAATTCTCTCTGTTCTTGT+TGG + Chr1:98563279-98563298 MsG0180005990.01.T01:CDS 35.0%
ACAGATATGTCTTATGCCTA+AGG + Chr1:98564966-98564985 MsG0180005990.01.T01:intron 35.0%
AGAGTGTAGTGTTTGTTTAG+AGG + Chr1:98564931-98564950 MsG0180005990.01.T01:intron 35.0%
GACAATTAAAAAGGAACGGA+GGG + Chr1:98561441-98561460 MsG0180005990.01.T01:intron 35.0%
GACAATTATAAAGGAACGGA+GGG - Chr1:98561198-98561217 None:intergenic 35.0%
TAGGAACTTCAAATCTTGCA+AGG + Chr1:98564224-98564243 MsG0180005990.01.T01:intron 35.0%
TCCAAATATAGCCTCTTTCA+AGG - Chr1:98563619-98563638 None:intergenic 35.0%
TCCTTGAAAGAGGCTATATT+TGG + Chr1:98563615-98563634 MsG0180005990.01.T01:CDS 35.0%
TGACAATTAAAAAGGAACGG+AGG + Chr1:98561440-98561459 MsG0180005990.01.T01:intron 35.0%
TGACAATTATAAAGGAACGG+AGG - Chr1:98561199-98561218 None:intergenic 35.0%
TTACGACGTTCTTATTCTTC+GGG + Chr1:98563580-98563599 MsG0180005990.01.T01:CDS 35.0%
TTCATCATTCGACTGAAGAA+AGG - Chr1:98565429-98565448 None:intergenic 35.0%
TTCTAAATAAGTACTCCCTC+CGG - Chr1:98561696-98561715 None:intergenic 35.0%
! CGAAATATTTTTCTTAGGGG+TGG - Chr1:98561099-98561118 None:intergenic 35.0%
! GTTCTGTTGTTGTAGTTCTA+AGG - Chr1:98564140-98564159 None:intergenic 35.0%
! GTTTTCTAACTATCCTTACC+TGG - Chr1:98564614-98564633 None:intergenic 35.0%
!! TCACCCTTTTAAAGAGTCTA+TGG + Chr1:98565586-98565605 MsG0180005990.01.T01:three_prime_UTR 35.0%
!!! GGGTGATTCTTTTTTTCACT+GGG - Chr1:98562201-98562220 None:intergenic 35.0%
!!! TAAGACTTTTTTTGCAGCTG+CGG + Chr1:98562549-98562568 MsG0180005990.01.T01:CDS 35.0%
!!! TGGCCGTTTATGTTTTTTTG+TGG - Chr1:98564428-98564447 None:intergenic 35.0%
!!! TGGGTGATTCTTTTTTTCAC+TGG - Chr1:98562202-98562221 None:intergenic 35.0%
AAACAAATGCAGGCAACCAA+AGG - Chr1:98564853-98564872 None:intergenic 40.0%
ACTGCAAGTACGTGTTGAAA+AGG - Chr1:98565685-98565704 None:intergenic 40.0%
ATTCAATTTCTCATCCCCGT+TGG + Chr1:98560969-98560988 MsG0180005990.01.T01:CDS 40.0%
ATTCTTTCTGTTTGCCTCCA+TGG + Chr1:98563956-98563975 MsG0180005990.01.T01:intron 40.0%
CGACTGAAGAAAGGAATGAT+TGG - Chr1:98565420-98565439 None:intergenic 40.0%
CTTGTTACAGTGGTTGAGAT+TGG + Chr1:98565514-98565533 MsG0180005990.01.T01:three_prime_UTR 40.0%
GATAGAAAATGCCTGCAGAA+TGG - Chr1:98564562-98564581 None:intergenic 40.0%
GTATTCAACATTTGGCAGGT+TGG + Chr1:98565358-98565377 MsG0180005990.01.T01:intron 40.0%
TAGTTCGTTCAACCCTTAAC+TGG + Chr1:98562299-98562318 MsG0180005990.01.T01:intron 40.0%
TATCAAACAGGAAGGGCTAA+TGG + Chr1:98562987-98563006 MsG0180005990.01.T01:intron 40.0%
TATGAGAATCGGTATGGAGA+CGG + Chr1:98561017-98561036 MsG0180005990.01.T01:intron 40.0%
TATGCAGATCTCTCGTAGTT+GGG + Chr1:98563548-98563567 MsG0180005990.01.T01:intron 40.0%
TCAACACGTACTTGCAGTAA+CGG + Chr1:98565687-98565706 MsG0180005990.01.T01:three_prime_UTR 40.0%
TCTTAGGGGTGGAAATACTT+TGG - Chr1:98561088-98561107 None:intergenic 40.0%
TGAGATCAAAAGAGTGACCA+TGG - Chr1:98563976-98563995 None:intergenic 40.0%
TGCTGTATTCAACATTTGGC+AGG + Chr1:98565354-98565373 MsG0180005990.01.T01:intron 40.0%
TGCTTATAATAGTGACCGGA+AGG - Chr1:98561697-98561678 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + Chr1:98561678-98561697 MsG0180005990.01.T01:intron 40.0%
TGTACTTCTGCTGCTGTTAT+CGG + Chr1:98565052-98565071 MsG0180005990.01.T01:CDS 40.0%
TGTTATCTTATCGTGACTCG+TGG + Chr1:98563394-98563413 MsG0180005990.01.T01:intron 40.0%
TTATGCAGATCTCTCGTAGT+TGG + Chr1:98563547-98563566 MsG0180005990.01.T01:intron 40.0%
TTCAATTTCTCATCCCCGTT+GGG + Chr1:98560970-98560989 MsG0180005990.01.T01:CDS 40.0%
TTCATCTGCAGCTAAACCTA+TGG - Chr1:98564721-98564740 None:intergenic 40.0%
TTCTCTCTGTTCTTGTTGGT+TGG + Chr1:98563283-98563302 MsG0180005990.01.T01:CDS 40.0%
TTCTTACTATCAAAGCTGCG+AGG - Chr1:98563129-98563148 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + Chr1:98561677-98561696 MsG0180005990.01.T01:intron 40.0%
TTTCTCTCCCATCTTGTTAC+AGG + Chr1:98564462-98564481 MsG0180005990.01.T01:CDS 40.0%
TTTGTTCAGTTGGCTACCAT+AGG + Chr1:98564702-98564721 MsG0180005990.01.T01:intron 40.0%
! AAGAGAGTTTTCCCTTGACA+GGG + Chr1:98565751-98565770 MsG0180005990.01.T01:three_prime_UTR 40.0%
! ACGTTCTTATTCTTCGGGTT+TGG + Chr1:98563585-98563604 MsG0180005990.01.T01:CDS 40.0%
! AGAATGAAAGCTTTGACCCA+AGG - Chr1:98565564-98565583 None:intergenic 40.0%
! AGCAAACATGCTTGTTACAG+TGG + Chr1:98565504-98565523 MsG0180005990.01.T01:three_prime_UTR 40.0%
! TATTCTTCGGGTTTGGACTT+TGG + Chr1:98563592-98563611 MsG0180005990.01.T01:CDS 40.0%
! TCTCTCTGTTCTTGTTGGTT+GGG + Chr1:98563284-98563303 MsG0180005990.01.T01:CDS 40.0%
!! ACGGAGGGAGTATCAAATTT+CGG - Chr1:98561183-98561202 None:intergenic 40.0%
!! TGCAGTAACGGATTCTCTAT+GGG + Chr1:98565699-98565718 MsG0180005990.01.T01:three_prime_UTR 40.0%
!! TTGCAGTAACGGATTCTCTA+TGG + Chr1:98565698-98565717 MsG0180005990.01.T01:three_prime_UTR 40.0%
!!! TGGTGAGCATTCTTTTTTGC+CGG + Chr1:98563319-98563338 MsG0180005990.01.T01:intron 40.0%
AGAGTGTGATATCTGAGCTG+AGG - Chr1:98562629-98562648 None:intergenic 45.0%
AGATGAAAACCCATTTGGCG+TGG + Chr1:98564734-98564753 MsG0180005990.01.T01:CDS 45.0%
ATCACCGATCTCAGAGAGAA+CGG - Chr1:98562530-98562549 None:intergenic 45.0%
ATGACCGCACATCGTCTTAA+GGG - Chr1:98564025-98564044 None:intergenic 45.0%
ATGAGAATCGGTATGGAGAC+GGG + Chr1:98561018-98561037 MsG0180005990.01.T01:intron 45.0%
ATTACCCTGCTCATACCCAA+CGG - Chr1:98560988-98561007 None:intergenic 45.0%
ATTTCACACAACCCCTGTCA+AGG - Chr1:98565766-98565785 None:intergenic 45.0%
CCTGCAGAATGGAAGTGAAA+AGG - Chr1:98564551-98564570 None:intergenic 45.0%
GAAATACTTTGGTCTGGGCA+TGG - Chr1:98561077-98561096 None:intergenic 45.0%
GAAGTTGAAGCTGAACTGGT+TGG + Chr1:98563776-98563795 MsG0180005990.01.T01:intron 45.0%
GATCAAAAGAGTGACCATGG+AGG - Chr1:98563973-98563992 None:intergenic 45.0%
GCTGCAGATGAAAACCCATT+TGG + Chr1:98564729-98564748 MsG0180005990.01.T01:CDS 45.0%
GGGTGGAAATACTTTGGTCT+GGG - Chr1:98561082-98561101 None:intergenic 45.0%
TATGACCGCACATCGTCTTA+AGG - Chr1:98564026-98564045 None:intergenic 45.0%
TGGACTTTGGTCCTTGAAAG+AGG + Chr1:98563605-98563624 MsG0180005990.01.T01:CDS 45.0%
TTGGAGGGATTCTGTGAGTT+TGG + Chr1:98564760-98564779 MsG0180005990.01.T01:intron 45.0%
TTGGGTATGAGCAGGGTAAT+GGG + Chr1:98560988-98561007 MsG0180005990.01.T01:CDS 45.0%
TTTCACACAACCCCTGTCAA+GGG - Chr1:98565765-98565784 None:intergenic 45.0%
! AGAGAGTTTTCCCTTGACAG+GGG + Chr1:98565752-98565771 MsG0180005990.01.T01:three_prime_UTR 45.0%
! ATGAAAGCTTTGACCCAAGG+TGG - Chr1:98565561-98565580 None:intergenic 45.0%
! CCTTTTCACTTCCATTCTGC+AGG + Chr1:98564548-98564567 MsG0180005990.01.T01:intron 45.0%
! GAAGAGAGTTTTCCCTTGAC+AGG + Chr1:98565750-98565769 MsG0180005990.01.T01:three_prime_UTR 45.0%
! TTTGATGGACAGGGAATCAG+AGG + Chr1:98563745-98563764 MsG0180005990.01.T01:intron 45.0%
!! ATGACCGTTCTCTCTGAGAT+CGG + Chr1:98562523-98562542 MsG0180005990.01.T01:CDS 45.0%
AACCCATTTGGCGTGGTTCT+TGG + Chr1:98564741-98564760 MsG0180005990.01.T01:CDS 50.0%
AAGAGCTTGCCTTTCCACCT+TGG + Chr1:98565544-98565563 MsG0180005990.01.T01:three_prime_UTR 50.0%
ACTTCTGCTGCTGTTATCGG+AGG + Chr1:98565055-98565074 MsG0180005990.01.T01:CDS 50.0%
AGAGCTTGCCTTTCCACCTT+GGG + Chr1:98565545-98565564 MsG0180005990.01.T01:three_prime_UTR 50.0%
ATCTGAGCTGAGGTAGCTTG+AGG - Chr1:98562619-98562638 None:intergenic 50.0%
CAGTCCCTTAAGACGATGTG+CGG + Chr1:98564018-98564037 MsG0180005990.01.T01:intron 50.0%
CATTTGGCGTGGTTCTTGGA+GGG + Chr1:98564745-98564764 MsG0180005990.01.T01:CDS 50.0%
CGAGGCAACCTGTTAAGACA+AGG - Chr1:98563111-98563130 None:intergenic 50.0%
CTCCAAGAACCACGCCAAAT+GGG - Chr1:98564746-98564765 None:intergenic 50.0%
CTTCTGCTGCTGTTATCGGA+GGG + Chr1:98565056-98565075 MsG0180005990.01.T01:CDS 50.0%
GATCTCAGAGAGAACGGTCA+TGG - Chr1:98562524-98562543 None:intergenic 50.0%
GGCTGAAGTTGAAGCTGAAC+TGG + Chr1:98563772-98563791 MsG0180005990.01.T01:CDS 50.0%
GGGGTGGAAATACTTTGGTC+TGG - Chr1:98561083-98561102 None:intergenic 50.0%
GTTGGGTATGAGCAGGGTAA+TGG + Chr1:98560987-98561006 MsG0180005990.01.T01:CDS 50.0%
TGAGAATCGGTATGGAGACG+GGG + Chr1:98561019-98561038 MsG0180005990.01.T01:intron 50.0%
TTACCCTGCTCATACCCAAC+GGG - Chr1:98560987-98561006 None:intergenic 50.0%
TTTGGTCTGGGCATGGCAAT+GGG - Chr1:98561070-98561089 None:intergenic 50.0%
! AGCTTTGACCCAAGGTGGAA+AGG - Chr1:98565556-98565575 None:intergenic 50.0%
! ATTTGGCAGGTTGGACTCTC+AGG + Chr1:98565367-98565386 MsG0180005990.01.T01:intron 50.0%
! GGTGGAAAGGCAAGCTCTTT+TGG - Chr1:98565543-98565562 None:intergenic 50.0%
!! CTGTTAAGACAAGGCGTCGT+GGG - Chr1:98563102-98563121 None:intergenic 50.0%
AATCGGTATGGAGACGGGGA+AGG + Chr1:98561023-98561042 MsG0180005990.01.T01:intron 55.0%
ATCCCCGTTGGGTATGAGCA+GGG + Chr1:98560981-98561000 MsG0180005990.01.T01:CDS 55.0%
CCACGACGCCTTGTCTTAAC+AGG + Chr1:98563100-98563119 MsG0180005990.01.T01:intron 55.0%
CCATTTGGCGTGGTTCTTGG+AGG + Chr1:98564744-98564763 MsG0180005990.01.T01:CDS 55.0%
CCTCCAAGAACCACGCCAAA+TGG - Chr1:98564747-98564766 None:intergenic 55.0%
CTTTGGTCTGGGCATGGCAA+TGG - Chr1:98561071-98561090 None:intergenic 55.0%
GAGCTGAGGTAGCTTGAGGT+GGG - Chr1:98562615-98562634 None:intergenic 55.0%
GGACAGGGAATCAGAGGAGT+TGG + Chr1:98563751-98563770 MsG0180005990.01.T01:intron 55.0%
GTGCGTGCAACTGTGCAACT+GGG - Chr1:98562221-98562240 None:intergenic 55.0%
TACCCTGCTCATACCCAACG+GGG - Chr1:98560986-98561005 None:intergenic 55.0%
TGAATGGGGTGACAAGAGCC+AGG + Chr1:98564593-98564612 MsG0180005990.01.T01:CDS 55.0%
TGAGCTGAGGTAGCTTGAGG+TGG - Chr1:98562616-98562635 None:intergenic 55.0%
TGGTTGGGCTGCTCCAAATC+TGG + Chr1:98563299-98563318 MsG0180005990.01.T01:CDS 55.0%
TTGGTCTGGGCATGGCAATG+GGG - Chr1:98561069-98561088 None:intergenic 55.0%
!! CCTGTTAAGACAAGGCGTCG+TGG - Chr1:98563103-98563122 None:intergenic 55.0%
AATCTCATCCCCGTCCCCGA+CGG - Chr1:98560952-98560971 None:intergenic 60.0%
CATCCCCGTTGGGTATGAGC+AGG + Chr1:98560980-98560999 MsG0180005990.01.T01:CDS 60.0%
CGTGCGTGCAACTGTGCAAC+TGG - Chr1:98562222-98562241 None:intergenic 60.0%
GGGGTGACAAGAGCCAGGTA+AGG + Chr1:98564598-98564617 MsG0180005990.01.T01:intron 60.0%
TCGGGAATACCCGAACCCGT+CGG + Chr1:98560933-98560952 MsG0180005990.01.T01:CDS 60.0%
! TGGCAGGTTGGACTCTCAGG+TGG + Chr1:98565370-98565389 MsG0180005990.01.T01:intron 60.0%
ATACCCGAACCCGTCGGGGA+CGG + Chr1:98560939-98560958 MsG0180005990.01.T01:CDS 65.0%
ATCTCATCCCCGTCCCCGAC+GGG - Chr1:98560951-98560970 None:intergenic 65.0%
CGGGAATACCCGAACCCGTC+GGG + Chr1:98560934-98560953 MsG0180005990.01.T01:CDS 65.0%
GGGAATACCCGAACCCGTCG+GGG + Chr1:98560935-98560954 MsG0180005990.01.T01:CDS 65.0%
GTCTGGGCATGGCAATGGGG+CGG - Chr1:98561066-98561085 None:intergenic 65.0%
TCTGGGCATGGCAATGGGGC+GGG - Chr1:98561065-98561084 None:intergenic 65.0%
CATGGCAATGGGGCGGGGTG+GGG - Chr1:98561059-98561078 None:intergenic 70.0%
CTGGGCATGGCAATGGGGCG+GGG - Chr1:98561064-98561083 None:intergenic 70.0%
GCATGGCAATGGGGCGGGGT+GGG - Chr1:98561060-98561079 None:intergenic 70.0%
TACCCGAACCCGTCGGGGAC+GGG + Chr1:98560940-98560959 MsG0180005990.01.T01:CDS 70.0%
! ATCCCCGTCCCCGACGGGTT+CGG - Chr1:98560946-98560965 None:intergenic 70.0%
ACCCGAACCCGTCGGGGACG+GGG + Chr1:98560941-98560960 MsG0180005990.01.T01:CDS 75.0%
CAATGGGGCGGGGTGGGGAC+GGG - Chr1:98561054-98561073 None:intergenic 75.0%
GCAATGGGGCGGGGTGGGGA+CGG - Chr1:98561055-98561074 None:intergenic 75.0%
GGCATGGCAATGGGGCGGGG+TGG - Chr1:98561061-98561080 None:intergenic 75.0%
! TCCCCGTCCCCGACGGGTTC+GGG - Chr1:98560945-98560964 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 98560928 98565833 98560928 ID=MsG0180005990.01;Name=MsG0180005990.01
Chr1 mRNA 98560928 98565833 98560928 ID=MsG0180005990.01.T01;Parent=MsG0180005990.01;Name=MsG0180005990.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0.81|0.83|0.91|0.72|0.75|12|389|256
Chr1 exon 98560928 98561027 98560928 ID=MsG0180005990.01.T01:exon:16502;Parent=MsG0180005990.01.T01
Chr1 exon 98562344 98562405 98562344 ID=MsG0180005990.01.T01:exon:16503;Parent=MsG0180005990.01.T01
Chr1 exon 98562502 98562570 98562502 ID=MsG0180005990.01.T01:exon:16504;Parent=MsG0180005990.01.T01
Chr1 exon 98563273 98563320 98563273 ID=MsG0180005990.01.T01:exon:16505;Parent=MsG0180005990.01.T01
Chr1 exon 98563555 98563643 98563555 ID=MsG0180005990.01.T01:exon:16506;Parent=MsG0180005990.01.T01
Chr1 exon 98563757 98563793 98563757 ID=MsG0180005990.01.T01:exon:16507;Parent=MsG0180005990.01.T01
Chr1 exon 98563873 98563920 98563873 ID=MsG0180005990.01.T01:exon:16508;Parent=MsG0180005990.01.T01
Chr1 exon 98564415 98564483 98564415 ID=MsG0180005990.01.T01:exon:16509;Parent=MsG0180005990.01.T01
Chr1 exon 98564570 98564614 98564570 ID=MsG0180005990.01.T01:exon:16510;Parent=MsG0180005990.01.T01
Chr1 exon 98564711 98564772 98564711 ID=MsG0180005990.01.T01:exon:16511;Parent=MsG0180005990.01.T01
Chr1 exon 98565039 98565111 98565039 ID=MsG0180005990.01.T01:exon:16512;Parent=MsG0180005990.01.T01
Chr1 exon 98565376 98565833 98565376 ID=MsG0180005990.01.T01:exon:16513;Parent=MsG0180005990.01.T01
Chr1 CDS 98560928 98561027 98560928 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98562344 98562405 98562344 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98562502 98562570 98562502 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98563273 98563320 98563273 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98563555 98563643 98563555 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98563757 98563793 98563757 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98563873 98563920 98563873 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98564415 98564483 98564415 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98564570 98564614 98564570 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98564711 98564772 98564711 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98565039 98565111 98565039 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 CDS 98565376 98565444 98565376 ID=MsG0180005990.01.T01:cds;Parent=MsG0180005990.01.T01
Chr1 three_prime_UTR 98565445 98565833 98565445 ID=MsG0180005990.01.T01:three_prime_utr;Parent=MsG0180005990.01.T01
Gene Sequence

>MsG0180005990.01.T01

ATGGGTCGGGAATACCCGAACCCGTCGGGGACGGGGATGAGATTCAATTTCTCATCCCCGTTGGGTATGAGCAGGGTAATGGGTAAGTATATGAGAATCGAGAGAAGAAGACAAACAACAACAACTCTCTCTCTCTCTGCAAATATGAGCTCAATTGTTCAGGGTTTTACAAAGTCACTCGCCATGACCGTTCTCTCTGAGATCGGTGATAAGACTTTTTTTGCAGCTGCGGTGATGACAATTCTCTCTGTTCTTGTTGGTTGGGCTGCTCCAAATCTGATCTCTCGTAGTTGGGCTCATCACATTACGACGTTCTTATTCTTCGGGTTTGGACTTTGGTCCTTGAAAGAGGCTATATTTGGAGAAGGGGAATCAGAGGAGTTGGCTGAAGTTGAAGCTGAACTGGACAAAGATTGGAAGGCTAAAAATGGAGCTACAAAAGATACCAAAAAGGTTGATGATGCCACAAAAAAACATAAACGGCCATTTTTATCTCAGTTTTTCTCTCCCATCTTGTTACAGGCATTTTCTATCACTTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTAGCTGCAGATGAAAACCCATTTGGCGTGGTTCTTGGAGGGATTCTGGGGCACGCGTTGTGTACTTCTGCTGCTGTTATCGGAGGGAAGAGTTTAGCATCTCAGATTTCTGAAAAAGTGGTTGGACTCTCAGGTGGAATTCTTTTTATTGTTTTTGGTATCCAATCATTCCTTTCTTCAGTCGAATGA

Protein sequence

>MsG0180005990.01.T01

MGREYPNPSGTGMRFNFSSPLGMSRVMGKYMRIERRRQTTTTLSLSANMSSIVQGFTKSLAMTVLSEIGDKTFFAAAVMTILSVLVGWAAPNLISRSWAHHITTFLFFGFGLWSLKEAIFGEGESEELAEVEAELDKDWKAKNGATKDTKKVDDATKKHKRPFLSQFFSPILLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGHALCTSAAVIGGKSLASQISEKVVGLSGGILFIVFGIQSFLSSVE*