AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031538.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031538.01.T01 MTR_6g025320 100.000 149 0 0 1 149 1 149 2.29e-106 300
MsG0680031538.01.T01 MTR_5g088320 99.329 149 1 0 1 149 1 149 8.74e-106 298
MsG0680031538.01.T01 MTR_7g087610 98.658 149 2 0 1 149 1 149 2.35e-104 295
MsG0680031538.01.T01 MTR_1g041285 78.378 148 32 0 1 148 1 148 3.51e-83 241
MsG0680031538.01.T01 MTR_1g041285 47.692 65 34 0 85 149 12 76 5.42e-12 60.1
MsG0680031538.01.T01 MTR_1g076650 77.703 148 33 0 1 148 1 148 5.81e-83 241
MsG0680031538.01.T01 MTR_1g076650 45.070 71 36 1 82 149 6 76 2.91e-11 58.2
MsG0680031538.01.T01 MTR_0168s0120 100.000 113 0 0 37 149 1 113 1.18e-78 228
MsG0680031538.01.T01 MTR_0168s0120 45.455 77 41 1 1 76 37 113 5.83e-14 64.3
MsG0680031538.01.T01 MTR_6g025320 100.000 113 0 0 37 149 1 113 1.18e-78 228
MsG0680031538.01.T01 MTR_6g025320 45.455 77 41 1 1 76 37 113 5.83e-14 64.3
MsG0680031538.01.T01 MTR_7g115040 62.838 148 55 0 1 148 1 148 2.31e-57 176
MsG0680031538.01.T01 MTR_1g071150 58.503 147 60 1 1 147 1 146 4.55e-57 175
MsG0680031538.01.T01 MTR_1g071150 40.260 77 45 1 73 149 1 76 6.64e-12 59.7
MsG0680031538.01.T01 MTR_5g011850 51.007 149 71 1 1 149 1 147 4.84e-49 154
MsG0680031538.01.T01 MTR_3g055570 53.425 146 53 1 1 146 41 171 2.98e-43 141
MsG0680031538.01.T01 MTR_8g066630 45.946 148 77 1 4 148 9 156 3.48e-43 140
MsG0680031538.01.T01 MTR_7g074020 45.455 143 78 0 4 146 22 164 4.95e-39 130
MsG0680031538.01.T01 MTR_7g074020 46.970 66 35 0 84 149 29 94 3.25e-12 61.2
MsG0680031538.01.T01 MTR_1g032070 47.945 146 72 1 4 149 42 183 3.93e-37 126
MsG0680031538.01.T01 MTR_6g007613 44.056 143 80 0 4 146 21 163 4.15e-37 125
MsG0680031538.01.T01 MTR_6g007613 43.421 76 43 0 74 149 18 93 2.11e-12 61.6
MsG0680031538.01.T01 MTR_3g055520 46.897 145 62 1 1 145 41 170 1.40e-36 124
MsG0680031538.01.T01 MTR_4g112460 43.262 141 78 1 8 146 7 147 1.71e-36 123
MsG0680031538.01.T01 MTR_4g112460 46.875 64 34 0 16 79 90 153 1.43e-12 62.0
MsG0680031538.01.T01 MTR_7g074020 47.244 127 67 0 4 130 22 148 2.74e-35 120
MsG0680031538.01.T01 MTR_7g074020 46.970 66 35 0 84 149 29 94 1.99e-12 61.6
MsG0680031538.01.T01 MTR_3g055585 46.207 145 63 1 1 145 41 170 1.93e-34 118
MsG0680031538.01.T01 MTR_8g069915 42.657 143 80 1 6 146 6 148 5.08e-34 117
MsG0680031538.01.T01 MTR_8g105230 48.855 131 67 0 12 142 36 166 9.41e-34 117
MsG0680031538.01.T01 MTR_8g105230 54.688 64 29 0 6 69 103 166 4.69e-16 71.6
MsG0680031538.01.T01 MTR_6g007613 45.669 127 69 0 4 130 21 147 2.05e-33 115
MsG0680031538.01.T01 MTR_6g007613 43.421 76 43 0 74 149 18 93 1.07e-12 62.0
MsG0680031538.01.T01 MTR_4g067270 44.928 138 74 1 11 146 4 141 8.01e-33 114
MsG0680031538.01.T01 MTR_4g067270 44.118 68 36 1 8 73 74 141 9.20e-11 57.0
MsG0680031538.01.T01 MTR_8g107110 44.444 135 74 1 12 146 24 157 1.04e-31 111
MsG0680031538.01.T01 MTR_8g107110 43.284 67 38 0 7 73 91 157 2.81e-12 61.2
MsG0680031538.01.T01 MTR_3g055490 68.000 75 24 0 1 75 41 115 4.36e-31 108
MsG0680031538.01.T01 MTR_5g079340 42.963 135 76 1 12 146 4 137 1.17e-30 107
MsG0680031538.01.T01 MTR_5g079340 39.706 68 41 0 8 75 72 139 3.86e-11 57.8
MsG0680031538.01.T01 MTR_3g067610 42.963 135 73 1 12 146 5 135 1.64e-28 102
MsG0680031538.01.T01 MTR_3g067610 43.750 64 36 0 12 75 74 137 6.79e-13 62.4
MsG0680031538.01.T01 MTR_1g046950 39.416 137 81 1 12 146 4 140 3.87e-28 101
MsG0680031538.01.T01 MTR_1g046950 43.750 64 36 0 12 75 79 142 3.38e-12 60.5
MsG0680031538.01.T01 MTR_6g079570 40.288 139 81 2 12 149 26 163 4.16e-27 100
MsG0680031538.01.T01 MTR_6g079570 43.836 73 41 0 6 78 93 165 7.06e-13 63.2
MsG0680031538.01.T01 MTR_5g092810 40.268 149 85 3 1 148 386 531 8.97e-27 104
MsG0680031538.01.T01 MTR_7g106710 41.096 146 83 2 1 146 429 571 9.56e-27 104
MsG0680031538.01.T01 MTR_1g047100 37.681 138 85 1 12 148 4 141 1.17e-26 97.8
MsG0680031538.01.T01 MTR_7g089760 44.286 140 76 1 11 148 4 143 1.21e-26 98.2
MsG0680031538.01.T01 MTR_7g075040 40.000 145 78 3 11 146 46 190 2.44e-26 98.6
MsG0680031538.01.T01 MTR_7g090450 40.816 147 82 3 5 146 66 212 3.20e-26 99.0
MsG0680031538.01.T01 MTR_4g132070 39.456 147 85 3 1 146 385 528 3.59e-26 103
MsG0680031538.01.T01 MTR_8g036075 39.189 148 82 3 7 146 44 191 1.61e-25 96.7
MsG0680031538.01.T01 MTR_1g096490 39.865 148 82 3 1 146 324 466 2.08e-25 100
MsG0680031538.01.T01 MTR_8g095440 38.356 146 87 2 1 146 324 466 2.31e-25 100
MsG0680031538.01.T01 MTR_1g026190 37.162 148 87 3 1 146 376 519 2.36e-25 100
MsG0680031538.01.T01 MTR_4g115170 40.523 153 73 2 12 146 64 216 3.68e-25 96.3
MsG0680031538.01.T01 MTR_4g107490 37.838 148 87 4 1 146 367 511 4.23e-25 100
MsG0680031538.01.T01 MTR_1g055255 37.671 146 88 2 1 146 418 560 4.34e-25 100
MsG0680031538.01.T01 MTR_3g098070 36.986 146 89 2 1 146 323 465 6.27e-25 99.4
MsG0680031538.01.T01 MTR_5g009830 38.514 148 85 3 1 146 360 503 8.19e-25 99.4
MsG0680031538.01.T01 MTR_3g051770 37.662 154 89 2 1 148 377 529 1.77e-24 98.2
MsG0680031538.01.T01 MTR_3g098090 36.986 146 89 2 1 146 326 468 5.76e-24 96.7
MsG0680031538.01.T01 MTR_8g099095 37.162 148 87 3 1 146 360 503 1.77e-23 95.5
MsG0680031538.01.T01 MTR_5g099240 35.616 146 91 2 1 146 318 460 7.15e-23 93.6
MsG0680031538.01.T01 MTR_1g054865 35.616 146 91 2 1 146 455 597 7.77e-23 93.6
MsG0680031538.01.T01 MTR_5g099240 35.616 146 91 2 1 146 390 532 9.24e-23 93.6
MsG0680031538.01.T01 MTR_7g068710 35.616 146 93 1 1 146 350 494 9.86e-23 93.2
MsG0680031538.01.T01 MTR_1g041150 34.932 146 92 2 1 146 412 554 1.85e-22 92.8
MsG0680031538.01.T01 MTR_0028s0170 36.986 146 90 2 1 146 372 515 4.82e-22 91.3
MsG0680031538.01.T01 MTR_2g098890 41.429 140 78 2 11 146 63 202 8.61e-22 87.0
MsG0680031538.01.T01 MTR_4g086260 35.766 137 86 1 10 146 55 189 1.60e-21 86.3
MsG0680031538.01.T01 MTR_4g103650 35.714 140 80 3 12 147 2 135 1.76e-21 84.3
MsG0680031538.01.T01 MTR_5g089320 36.054 147 90 3 1 146 362 505 2.09e-21 89.7
MsG0680031538.01.T01 MTR_3g055510 38.194 144 36 2 1 144 41 131 2.52e-21 84.0
MsG0680031538.01.T01 MTR_3g089070 32.374 139 83 2 13 146 7 139 3.20e-21 84.0
MsG0680031538.01.T01 MTR_3g089090 32.374 139 83 2 13 146 6 138 3.36e-21 84.0
MsG0680031538.01.T01 MTR_5g027000 32.847 137 92 0 6 142 16 152 7.95e-21 83.6
MsG0680031538.01.T01 MTR_4g132040 35.374 147 90 4 1 146 390 532 8.86e-21 87.8
MsG0680031538.01.T01 MTR_4g066660 34.694 147 93 3 1 147 366 509 8.96e-21 87.8
MsG0680031538.01.T01 MTR_7g106710 37.671 146 83 3 1 146 429 566 1.04e-20 87.8
MsG0680031538.01.T01 MTR_3g055480 64.815 54 19 0 93 146 53 106 1.40e-20 81.6
MsG0680031538.01.T01 MTR_3g055480 42.667 75 36 1 1 75 41 108 3.40e-13 62.4
MsG0680031538.01.T01 MTR_4g103655 34.286 140 82 3 12 147 6 139 6.51e-20 80.5
MsG0680031538.01.T01 MTR_1g052530 31.081 148 101 1 1 148 346 492 7.40e-20 85.1
MsG0680031538.01.T01 MTR_4g103630 34.286 140 82 3 12 147 6 139 8.71e-20 80.1
MsG0680031538.01.T01 MTR_5g017550 36.029 136 86 1 12 147 48 182 1.69e-19 80.5
MsG0680031538.01.T01 MTR_7g091890 31.081 148 101 1 1 148 352 498 2.14e-19 84.0
MsG0680031538.01.T01 MTR_6g023460 28.571 140 99 1 8 147 4 142 4.07e-19 78.6
MsG0680031538.01.T01 MTR_5g008705 31.250 128 88 0 19 146 1 128 1.77e-18 76.6
MsG0680031538.01.T01 MTR_5g017510 35.000 140 83 3 12 147 48 183 1.31e-17 75.9
MsG0680031538.01.T01 MTR_5g017560 35.000 140 83 3 12 147 48 183 1.31e-17 75.9
MsG0680031538.01.T01 MTR_8g078270 32.593 135 89 2 13 146 54 187 1.90e-17 75.5
MsG0680031538.01.T01 MTR_7g074240 32.192 146 87 2 13 146 25 170 4.10e-16 71.6
MsG0680031538.01.T01 MTR_5g008695 33.036 112 73 1 36 145 1 112 6.40e-15 67.0
MsG0680031538.01.T01 MTR_3g083470 47.059 68 36 0 6 73 150 217 3.33e-14 67.4
MsG0680031538.01.T01 MTR_3g083470 32.847 137 82 1 11 147 92 218 1.03e-13 66.2
MsG0680031538.01.T01 MTR_5g022030 27.632 152 98 4 1 146 395 540 9.80e-14 67.8
MsG0680031538.01.T01 MTR_5g089440 36.364 99 60 2 49 146 80 176 5.95e-12 60.8
MsG0680031538.01.T01 MTR_4g082050 44.595 74 41 0 73 146 65 138 8.18e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031538.01.T01 AT3G43810 100.000 148 0 0 1 148 1 148 1.28e-106 303
MsG0680031538.01.T01 AT3G43810 45.455 77 41 1 73 149 1 76 4.86e-13 64.3
MsG0680031538.01.T01 AT3G43810 100.000 149 0 0 1 149 1 149 2.40e-106 300
MsG0680031538.01.T01 AT2G27030 99.329 149 1 0 1 149 1 149 4.05e-106 300
MsG0680031538.01.T01 AT2G27030 44.304 79 43 1 1 78 73 151 1.81e-13 64.7
MsG0680031538.01.T01 AT5G21274 99.329 149 1 0 1 149 1 149 7.59e-106 298
MsG0680031538.01.T01 AT3G56800 99.329 149 1 0 1 149 1 149 9.05e-106 298
MsG0680031538.01.T01 AT2G27030 99.329 149 1 0 1 149 1 149 9.05e-106 298
MsG0680031538.01.T01 AT2G41110 99.329 149 1 0 1 149 1 149 9.05e-106 298
MsG0680031538.01.T01 AT5G37780 97.315 149 4 0 1 149 1 149 2.46e-104 295
MsG0680031538.01.T01 AT1G66410 97.315 149 4 0 1 149 1 149 2.46e-104 295
MsG0680031538.01.T01 AT2G41110 91.925 161 1 1 1 149 1 161 7.29e-102 289
MsG0680031538.01.T01 AT1G66410 91.195 159 4 1 1 149 1 159 5.12e-101 286
MsG0680031538.01.T01 AT5G37780 88.415 164 4 1 1 149 1 164 4.68e-100 284
MsG0680031538.01.T01 AT5G37780 82.857 175 4 1 1 149 1 175 3.62e-98 280
MsG0680031538.01.T01 AT5G37780 97.581 124 3 0 26 149 13 136 7.10e-86 247
MsG0680031538.01.T01 AT5G37780 45.455 77 41 1 1 76 60 136 6.60e-14 64.7
MsG0680031538.01.T01 AT3G22930 76.389 144 34 0 4 147 27 170 5.23e-80 234
MsG0680031538.01.T01 AT4G14640 74.825 143 36 0 5 147 6 148 3.64e-79 231
MsG0680031538.01.T01 AT3G43810 100.000 113 0 0 37 149 1 113 1.23e-78 228
MsG0680031538.01.T01 AT3G43810 45.455 77 41 1 1 76 37 113 6.10e-14 64.3
MsG0680031538.01.T01 AT3G43810 100.000 113 0 0 37 149 1 113 1.23e-78 228
MsG0680031538.01.T01 AT3G43810 45.455 77 41 1 1 76 37 113 6.10e-14 64.3
MsG0680031538.01.T01 AT1G66410 97.345 113 3 0 37 149 1 113 3.43e-77 224
MsG0680031538.01.T01 AT1G66410 45.455 77 41 1 1 76 37 113 1.52e-14 65.9
MsG0680031538.01.T01 AT1G66410 97.345 113 3 0 37 149 1 113 3.43e-77 224
MsG0680031538.01.T01 AT1G66410 45.455 77 41 1 1 76 37 113 1.52e-14 65.9
MsG0680031538.01.T01 AT4G14640 72.951 122 33 0 26 147 9 130 1.27e-65 196
MsG0680031538.01.T01 AT4G14640 46.774 62 33 0 12 73 68 129 4.27e-13 62.8
MsG0680031538.01.T01 AT2G41090 64.430 149 50 1 1 149 1 146 5.74e-61 186
MsG0680031538.01.T01 AT2G41100 57.229 166 54 2 1 149 55 220 1.61e-54 173
MsG0680031538.01.T01 AT2G41100 62.766 94 32 1 4 97 148 238 6.05e-31 112
MsG0680031538.01.T01 AT2G41100 45.669 127 53 2 36 146 1 127 1.72e-29 108
MsG0680031538.01.T01 AT2G41100 57.229 166 54 2 1 149 55 220 1.61e-54 173
MsG0680031538.01.T01 AT2G41100 62.766 94 32 1 4 97 148 238 6.05e-31 112
MsG0680031538.01.T01 AT2G41100 45.669 127 53 2 36 146 1 127 1.72e-29 108
MsG0680031538.01.T01 AT2G41100 57.229 166 54 2 1 149 55 220 1.61e-54 173
MsG0680031538.01.T01 AT2G41100 62.766 94 32 1 4 97 148 238 6.05e-31 112
MsG0680031538.01.T01 AT2G41100 45.669 127 53 2 36 146 1 127 1.72e-29 108
MsG0680031538.01.T01 AT2G41100 57.229 166 54 2 1 149 90 255 4.23e-54 173
MsG0680031538.01.T01 AT2G41100 51.852 162 62 2 1 146 1 162 4.90e-50 163
MsG0680031538.01.T01 AT2G41100 62.766 94 32 1 4 97 183 273 1.22e-30 112
MsG0680031538.01.T01 AT2G41100 57.229 166 54 2 1 149 90 255 4.23e-54 173
MsG0680031538.01.T01 AT2G41100 51.852 162 62 2 1 146 1 162 4.90e-50 163
MsG0680031538.01.T01 AT2G41100 62.766 94 32 1 4 97 183 273 1.22e-30 112
MsG0680031538.01.T01 AT4G14640 73.786 103 27 0 5 107 6 108 7.12e-54 166
MsG0680031538.01.T01 AT3G22930 73.786 103 27 0 4 106 27 129 3.57e-52 162
MsG0680031538.01.T01 AT3G22930 46.774 62 33 0 85 146 35 96 3.45e-11 57.8
MsG0680031538.01.T01 AT1G12310 49.660 147 72 1 3 149 4 148 4.51e-47 150
MsG0680031538.01.T01 AT1G62820 48.980 147 73 1 3 149 4 148 8.98e-47 149
MsG0680031538.01.T01 AT3G51920 50.676 148 73 0 1 148 1 148 2.33e-46 148
MsG0680031538.01.T01 AT1G32250 42.763 152 81 1 1 146 5 156 9.71e-41 134
MsG0680031538.01.T01 AT3G50360 47.183 142 75 0 5 146 20 161 9.15e-40 132
MsG0680031538.01.T01 AT3G50360 45.714 70 38 0 80 149 22 91 4.50e-13 63.5
MsG0680031538.01.T01 AT4G37010 43.662 142 80 0 5 146 24 165 1.36e-35 121
MsG0680031538.01.T01 AT4G37010 43.662 142 80 0 5 146 20 161 1.75e-35 121
MsG0680031538.01.T01 AT2G41100 53.077 130 44 2 37 149 1 130 4.19e-35 121
MsG0680031538.01.T01 AT2G41100 62.766 94 32 1 4 97 58 148 4.48e-32 113
MsG0680031538.01.T01 AT2G41100 61.856 97 34 1 1 97 1 94 5.39e-35 119
MsG0680031538.01.T01 AT2G41100 50.649 77 37 1 73 149 1 76 1.52e-17 74.7
MsG0680031538.01.T01 AT1G18530 42.069 145 76 2 7 146 2 143 7.78e-34 116
MsG0680031538.01.T01 AT1G18530 42.647 68 39 0 12 79 82 149 1.56e-11 59.3
MsG0680031538.01.T01 AT1G24620 46.763 139 73 1 9 147 34 171 2.32e-33 116
MsG0680031538.01.T01 AT1G24620 49.254 67 34 0 7 73 105 171 1.85e-13 64.7
MsG0680031538.01.T01 AT3G25600 41.060 151 81 2 1 146 1 148 9.70e-33 114
MsG0680031538.01.T01 AT3G25600 41.176 68 40 0 12 79 87 154 2.18e-11 58.9
MsG0680031538.01.T01 AT3G03000 43.836 146 81 1 4 148 12 157 3.14e-32 112
MsG0680031538.01.T01 AT1G18210 42.222 135 74 1 12 146 23 153 4.26e-31 110
MsG0680031538.01.T01 AT1G18210 42.222 135 74 1 12 146 23 153 4.26e-31 110
MsG0680031538.01.T01 AT1G05990 44.604 139 74 2 11 146 4 142 4.42e-31 109
MsG0680031538.01.T01 AT1G66400 43.478 138 76 1 12 147 15 152 6.18e-31 109
MsG0680031538.01.T01 AT5G37770 42.446 139 76 1 12 146 17 155 8.53e-30 106
MsG0680031538.01.T01 AT5G37770 44.615 65 36 0 10 74 92 156 1.41e-13 64.7
MsG0680031538.01.T01 AT5G37770 42.446 139 76 1 12 146 17 155 8.53e-30 106
MsG0680031538.01.T01 AT5G37770 44.615 65 36 0 10 74 92 156 1.41e-13 64.7
MsG0680031538.01.T01 AT1G73630 40.146 137 78 1 12 148 20 152 2.05e-29 105
MsG0680031538.01.T01 AT4G03290 45.390 141 72 2 11 146 4 144 2.48e-29 105
MsG0680031538.01.T01 AT4G03290 46.875 64 32 1 14 75 83 146 1.96e-11 58.9
MsG0680031538.01.T01 AT2G43290 42.657 143 75 3 11 146 64 206 2.50e-29 106
MsG0680031538.01.T01 AT1G76040 41.096 146 84 2 1 146 167 310 4.78e-29 108
MsG0680031538.01.T01 AT1G76040 41.096 146 84 2 1 146 167 310 4.78e-29 108
MsG0680031538.01.T01 AT1G76040 41.096 146 84 2 1 146 405 548 6.40e-28 108
MsG0680031538.01.T01 AT3G59440 42.336 137 76 2 12 146 51 186 3.80e-27 100
MsG0680031538.01.T01 AT2G15680 37.324 142 87 1 5 146 43 182 1.28e-26 99.0
MsG0680031538.01.T01 AT5G23580 39.726 146 85 2 1 146 316 458 1.72e-26 103
MsG0680031538.01.T01 AT4G21940 39.597 149 86 3 1 148 395 540 6.79e-26 102
MsG0680031538.01.T01 AT4G21940 39.597 149 86 3 1 148 395 540 8.48e-26 102
MsG0680031538.01.T01 AT4G12860 40.580 138 80 1 11 146 4 141 3.08e-25 94.7
MsG0680031538.01.T01 AT4G23650 38.514 148 85 3 1 146 372 515 3.73e-25 100
MsG0680031538.01.T01 AT4G23650 43.478 69 36 1 82 147 377 445 5.13e-11 59.7
MsG0680031538.01.T01 AT1G35670 37.671 146 88 2 1 146 320 462 4.55e-25 99.8
MsG0680031538.01.T01 AT4G09570 38.514 148 84 3 1 146 319 461 6.66e-25 99.4
MsG0680031538.01.T01 AT3G07490 41.304 138 79 1 11 146 4 141 7.26e-25 93.6
MsG0680031538.01.T01 AT4G04720 38.255 149 88 3 1 148 373 518 1.42e-24 98.6
MsG0680031538.01.T01 AT4G04720 38.255 149 88 3 1 148 373 518 1.42e-24 98.6
MsG0680031538.01.T01 AT3G10660 36.301 146 90 2 1 146 480 622 2.11e-24 98.2
MsG0680031538.01.T01 AT3G10660 36.301 146 90 2 1 146 480 622 2.11e-24 98.2
MsG0680031538.01.T01 AT4G38230 36.986 146 89 2 1 146 174 316 2.27e-24 96.7
MsG0680031538.01.T01 AT5G19360 40.136 147 84 3 1 146 362 505 2.65e-24 97.8
MsG0680031538.01.T01 AT4G38230 36.986 146 89 2 1 146 318 460 6.39e-24 96.7
MsG0680031538.01.T01 AT4G38230 36.986 146 89 2 1 146 318 460 6.39e-24 96.7
MsG0680031538.01.T01 AT4G38230 36.986 146 89 2 1 146 348 490 6.52e-24 96.7
MsG0680031538.01.T01 AT1G61950 38.514 148 85 3 1 146 393 536 6.67e-24 96.7
MsG0680031538.01.T01 AT3G10190 40.146 137 79 3 12 146 70 205 7.07e-24 92.4
MsG0680031538.01.T01 AT5G12180 39.456 147 85 3 1 146 367 510 1.15e-23 95.9
MsG0680031538.01.T01 AT5G04870 35.616 146 91 2 1 146 444 586 2.22e-23 95.5
MsG0680031538.01.T01 AT1G74740 35.570 149 93 3 1 148 353 499 4.28e-23 94.4
MsG0680031538.01.T01 AT3G20410 36.301 146 91 2 1 146 385 528 1.02e-22 93.2
MsG0680031538.01.T01 AT3G20410 36.301 146 91 2 1 146 385 528 1.02e-22 93.2
MsG0680031538.01.T01 AT2G17290 35.616 146 91 2 1 146 379 521 1.56e-22 92.8
MsG0680031538.01.T01 AT2G17290 35.616 146 91 2 1 146 379 521 1.56e-22 92.8
MsG0680031538.01.T01 AT3G50770 36.429 140 84 2 12 146 64 203 2.10e-22 88.6
MsG0680031538.01.T01 AT3G50770 44.118 68 38 0 82 149 61 128 8.40e-13 63.5
MsG0680031538.01.T01 AT4G04740 36.986 146 88 3 2 146 363 505 4.18e-22 91.7
MsG0680031538.01.T01 AT4G04740 36.986 146 88 3 2 146 363 505 4.18e-22 91.7
MsG0680031538.01.T01 AT4G04740 36.986 146 88 3 2 146 363 505 4.18e-22 91.7
MsG0680031538.01.T01 AT4G04740 36.986 146 88 3 2 146 363 505 4.18e-22 91.7
MsG0680031538.01.T01 AT4G04740 36.986 146 88 3 2 146 363 505 4.18e-22 91.7
MsG0680031538.01.T01 AT4G04740 36.986 146 88 3 2 146 363 505 4.18e-22 91.7
MsG0680031538.01.T01 AT2G38910 34.932 146 92 2 1 146 428 570 4.59e-22 91.7
MsG0680031538.01.T01 AT4G04695 36.242 149 91 3 1 148 325 470 4.68e-22 91.3
MsG0680031538.01.T01 AT4G35310 34.932 146 92 2 1 146 391 533 4.90e-22 91.7
MsG0680031538.01.T01 AT4G35310 34.932 146 92 2 1 146 391 533 4.90e-22 91.7
MsG0680031538.01.T01 AT5G17470 37.500 136 82 2 15 148 5 139 5.92e-22 85.9
MsG0680031538.01.T01 AT5G17470 47.541 61 32 0 14 74 79 139 2.79e-12 60.8
MsG0680031538.01.T01 AT1G50700 34.932 146 93 2 1 146 367 510 8.55e-22 90.9
MsG0680031538.01.T01 AT4G04700 38.095 147 87 3 1 146 325 468 1.48e-21 90.1
MsG0680031538.01.T01 AT5G42380 36.232 138 87 1 10 146 47 184 2.16e-21 85.5
MsG0680031538.01.T01 AT1G18890 37.333 150 89 4 1 148 357 503 5.24e-21 88.6
MsG0680031538.01.T01 AT3G57530 35.374 147 91 3 1 146 357 500 1.19e-20 87.4
MsG0680031538.01.T01 AT5G12480 34.228 149 96 2 1 148 259 406 1.22e-20 87.0
MsG0680031538.01.T01 AT2G36180 41.176 136 76 3 15 147 3 137 1.39e-20 82.4
MsG0680031538.01.T01 AT5G12480 34.228 149 96 2 1 148 353 500 1.47e-20 87.4
MsG0680031538.01.T01 AT3G03400 37.600 125 76 1 17 139 10 134 2.30e-20 81.6
MsG0680031538.01.T01 AT3G03410 35.556 135 78 1 14 148 4 129 9.74e-20 79.7
MsG0680031538.01.T01 AT3G51850 32.877 146 97 1 1 146 348 492 1.04e-19 84.7
MsG0680031538.01.T01 AT2G41410 34.459 148 94 3 4 148 62 209 1.44e-19 81.6
MsG0680031538.01.T01 AT5G19450 32.215 149 99 2 1 148 351 498 7.68e-19 82.4
MsG0680031538.01.T01 AT5G19450 32.215 149 99 2 1 148 351 498 7.68e-19 82.4
MsG0680031538.01.T01 AT4G04710 34.694 147 92 3 1 146 312 455 1.02e-18 82.0
MsG0680031538.01.T01 AT4G04710 34.694 147 92 3 1 146 326 469 1.04e-18 82.0
MsG0680031538.01.T01 AT4G04710 34.694 147 92 3 1 146 339 482 1.09e-18 82.0
MsG0680031538.01.T01 AT2G41860 31.507 146 99 1 1 146 348 492 7.47e-18 79.3
MsG0680031538.01.T01 AT2G41860 31.507 146 99 1 1 146 348 492 8.07e-18 79.3
MsG0680031538.01.T01 AT4G04710 34.899 149 91 4 1 146 339 484 1.48e-17 78.6
MsG0680031538.01.T01 AT1G50700 30.233 172 92 3 1 146 367 536 2.21e-17 78.2
MsG0680031538.01.T01 AT2G31500 32.000 150 97 4 1 147 360 507 9.72e-17 76.3
MsG0680031538.01.T01 AT4G20780 33.775 151 78 3 17 146 34 183 1.43e-16 73.2
MsG0680031538.01.T01 AT4G04740 34.848 132 82 3 2 132 363 491 4.52e-16 74.3
MsG0680031538.01.T01 AT5G44460 33.566 143 83 2 16 146 32 174 3.72e-15 69.3
MsG0680031538.01.T01 AT1G76040 36.634 101 63 1 1 101 405 504 1.46e-14 70.1
MsG0680031538.01.T01 AT4G21940 37.374 99 61 1 1 99 395 492 2.30e-14 69.3
MsG0680031538.01.T01 AT1G76650 32.168 143 90 2 7 146 38 176 3.73e-14 66.6
MsG0680031538.01.T01 AT1G76650 32.168 143 90 2 7 146 38 176 3.73e-14 66.6
MsG0680031538.01.T01 AT5G66210 27.632 152 98 4 1 146 358 503 4.46e-14 68.6
MsG0680031538.01.T01 AT5G66210 27.632 152 98 4 1 146 358 503 4.46e-14 68.6
MsG0680031538.01.T01 AT2G17890 27.632 152 98 5 1 146 404 549 5.35e-14 68.6
MsG0680031538.01.T01 AT3G51850 33.962 106 69 1 1 106 348 452 5.42e-14 68.6
MsG0680031538.01.T01 AT1G76640 31.852 135 86 2 16 146 26 158 8.35e-14 65.1
MsG0680031538.01.T01 AT5G49480 28.758 153 101 3 1 146 7 158 5.67e-13 63.2
MsG0680031538.01.T01 AT1G21550 30.719 153 82 4 11 147 9 153 1.17e-12 62.0
MsG0680031538.01.T01 AT1G50700 35.354 99 63 1 1 99 367 464 1.59e-12 64.3
MsG0680031538.01.T01 AT1G76650 31.469 143 81 3 7 146 38 166 1.42e-11 59.3
MsG0680031538.01.T01 AT5G66210 26.718 131 90 3 1 125 358 488 2.67e-11 60.8
MsG0680031538.01.T01 AT4G36070 27.273 154 100 5 1 148 367 514 7.55e-11 59.3
MsG0680031538.01.T01 AT4G36070 27.273 154 100 5 1 148 367 514 7.77e-11 59.3

Find 62 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCCTACCATTCATATTT+TGG 0.145819 6:-21909835 MsG0680031538.01.T01:three_prime_UTR
ATTTCAGAGAATGTTGATTA+AGG 0.261146 6:-21910063 MsG0680031538.01.T01:three_prime_UTR
GGAGCTGAAAGAGGCGTTTC+GGG 0.325103 6:-21910298 MsG0680031538.01.T01:CDS
CCCAACTGAGGCAGAGCTTC+AGG 0.327616 6:-21910421 MsG0680031538.01.T01:CDS
GGAACTGTTATGCGTTCATT+GGG 0.343588 6:-21910450 MsG0680031538.01.T01:CDS
TTGATTAAGGAAATGACAAT+AGG 0.351653 6:-21910050 MsG0680031538.01.T01:three_prime_UTR
TGGAACTGTTATGCGTTCAT+TGG 0.360083 6:-21910451 MsG0680031538.01.T01:CDS
ATGGTTAAATGTTTGATTAG+TGG 0.365514 6:-21909953 MsG0680031538.01.T01:three_prime_UTR
AGGAGCTGAAAGAGGCGTTT+CGG 0.391958 6:-21910299 MsG0680031538.01.T01:CDS
AGCTTTCAGCTTATTCGATA+AGG 0.414465 6:-21913181 MsG0680031538.01.T01:CDS
TCCTGAAGCTCTGCCTCAGT+TGG 0.419465 6:+21910420 None:intergenic
TGATCAGATCTCTGAGTTCA+AGG 0.430216 6:-21913205 MsG0680031538.01.T01:CDS
TGATTAAGGAAATGACAATA+GGG 0.430729 6:-21910049 MsG0680031538.01.T01:three_prime_UTR
GTGGTAAGTCCTGCTGCTAT+TGG 0.435030 6:-21909934 MsG0680031538.01.T01:three_prime_UTR
CCTGAAGCTCTGCCTCAGTT+GGG 0.457983 6:+21910421 None:intergenic
AAACTATGAGGAATTCGTTA+AGG 0.465882 6:-21910139 MsG0680031538.01.T01:CDS
ATCCGTGAGGCTGATGTTGA+TGG 0.484617 6:-21910174 MsG0680031538.01.T01:CDS
TGCATCACAACCAAGGAGCT+TGG 0.485199 6:-21910471 MsG0680031538.01.T01:CDS
CGCCTCTTTCAGCTCCTCCT+CGG 0.490822 6:+21910305 None:intergenic
CATAACAGTTCCAAGCTCCT+TGG 0.491995 6:+21910461 None:intergenic
CCCTGAGTTTCTTAACCTCA+TGG 0.495316 6:-21910352 MsG0680031538.01.T01:CDS
TGCTATTGGTTGTGGTCGAA+TGG 0.507018 6:-21909920 MsG0680031538.01.T01:three_prime_UTR
CATCGGTGAGCTTCTCGCCA+AGG 0.508143 6:+21910214 None:intergenic
AGTCCTGCTGCTATTGGTTG+TGG 0.512344 6:-21909928 MsG0680031538.01.T01:three_prime_UTR
ACCATTCACCAAAATATGAA+TGG 0.512874 6:+21909827 None:intergenic
TTTCAGCTCCTCCTCGGAGT+CGG 0.513859 6:+21910311 None:intergenic
CATCTCATCGACTTCTTCAT+CGG 0.523419 6:+21910197 None:intergenic
GCCATGAGGTTAAGAAACTC+AGG 0.525054 6:+21910351 None:intergenic
TGATGGTCAAATAAACTATG+AGG 0.543599 6:-21910151 MsG0680031538.01.T01:CDS
CTCCGAGGAGGAGCTGAAAG+AGG 0.551298 6:-21910307 MsG0680031538.01.T01:CDS
TTTAGAGAGAGAAACTGAAT+CGG 0.551786 6:+21913277 None:intergenic
TTCAGCTTATTCGATAAGGA+TGG 0.562759 6:-21913177 MsG0680031538.01.T01:CDS
GGAAATGACAATAGGGGAGG+GGG 0.566609 6:-21910042 MsG0680031538.01.T01:three_prime_UTR
GGTGAGCTTCTCGCCAAGGT+TGG 0.567744 6:+21910218 None:intergenic
AGGAAATGACAATAGGGGAG+GGG 0.569407 6:-21910043 MsG0680031538.01.T01:three_prime_UTR
CGACCACAACCAATAGCAGC+AGG 0.573340 6:+21909925 None:intergenic
TCTTCTTGAATGGTGACAAG+AGG 0.576025 6:-21909743 MsG0680031538.01.T01:three_prime_UTR
AAGGAAATGACAATAGGGGA+GGG 0.580835 6:-21910044 MsG0680031538.01.T01:three_prime_UTR
GCAATGATTACTACAAAGCA+AGG 0.582533 6:+21909999 None:intergenic
CGTCATGTGATGACCAACCT+TGG 0.582821 6:-21910231 MsG0680031538.01.T01:CDS
CCTTCATCTTCCTTGCCATG+AGG 0.583416 6:+21910337 None:intergenic
AAGAAGAAGAAAAGCGACGA+TGG 0.585072 6:-21913244 MsG0680031538.01.T01:exon
CCTCATGGCAAGGAAGATGA+AGG 0.591761 6:-21910337 MsG0680031538.01.T01:CDS
ATCAATGAAGTAGATGCTGA+TGG 0.594359 6:-21910393 MsG0680031538.01.T01:CDS
CACCATCAACATCAGCCTCA+CGG 0.595594 6:+21910172 None:intergenic
ATGAATCTTCAATGAAACGC+TGG 0.596978 6:+21913342 None:intergenic
GATTAAGGAAATGACAATAG+GGG 0.598312 6:-21910048 MsG0680031538.01.T01:three_prime_UTR
GGAATTCGTTAAGGTCATGA+TGG 0.606742 6:-21910130 MsG0680031538.01.T01:CDS
TTCACCAAAATATGAATGGT+AGG 0.610974 6:+21909831 None:intergenic
AGTTTCTTAACCTCATGGCA+AGG 0.615477 6:-21910347 MsG0680031538.01.T01:CDS
GAGGCTGATGTTGATGGTGA+TGG 0.620773 6:-21910168 MsG0680031538.01.T01:CDS
GAAGTAGATGCTGATGGGAA+TGG 0.624358 6:-21910387 MsG0680031538.01.T01:CDS
TAAGGAAATGACAATAGGGG+AGG 0.639143 6:-21910045 MsG0680031538.01.T01:three_prime_UTR
CCATGAGGTTAAGAAACTCA+GGG 0.643314 6:+21910352 None:intergenic
TTATTCGATAAGGATGGCGA+TGG 0.647329 6:-21913171 MsG0680031538.01.T01:intron
TGCAGGTTGCATCACAACCA+AGG 0.653135 6:-21910478 MsG0680031538.01.T01:intron
GAACTGTTATGCGTTCATTG+GGG 0.667564 6:-21910449 MsG0680031538.01.T01:CDS
GATGAAGGACACCGACTCCG+AGG 0.669209 6:-21910322 MsG0680031538.01.T01:CDS
TCAATGAAGTAGATGCTGAT+GGG 0.676011 6:-21910392 MsG0680031538.01.T01:CDS
GAAGGACACCGACTCCGAGG+AGG 0.689648 6:-21910319 MsG0680031538.01.T01:CDS
ATTGGGGCAAAACCCAACTG+AGG 0.728233 6:-21910433 MsG0680031538.01.T01:CDS
AGTCGATGAGATGATCCGTG+AGG 0.760734 6:-21910187 MsG0680031538.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATGTAAAAAGAAA+GGG + Chr6:21913132-21913151 None:intergenic 10.0%
!! AAACAAATTAACAAAATCAA+AGG + Chr6:21910154-21910173 None:intergenic 15.0%
!! AAACAATCTACAAAAAAAAA+AGG + Chr6:21909982-21910001 None:intergenic 15.0%
!! GAAATAAAATGTAAAAAGAA+AGG + Chr6:21913133-21913152 None:intergenic 15.0%
!!! AACTTTTATTCATGATAATA+TGG + Chr6:21912270-21912289 None:intergenic 15.0%
!!! GTTGTTGATTATTATATATA+TGG - Chr6:21912597-21912616 MsG0680031538.01.T01:intron 15.0%
!!! TCTTTTTACATTTTATTTCA+TGG - Chr6:21913134-21913153 MsG0680031538.01.T01:intron 15.0%
!!! TTAATTTGTTTTGAATTTCA+TGG - Chr6:21910163-21910182 MsG0680031538.01.T01:CDS 15.0%
!!! TTTTATAAATTCTTCTTGAA+TGG - Chr6:21913353-21913372 MsG0680031538.01.T01:five_prime_UTR 15.0%
!! AACCATAGGAAAAATATTTA+TGG + Chr6:21911111-21911130 None:intergenic 20.0%
!! ACAACACTTTCTATTAAATA+GGG - Chr6:21911870-21911889 MsG0680031538.01.T01:intron 20.0%
!! ATCATTTAACCATTATATCA+AGG + Chr6:21911028-21911047 None:intergenic 20.0%
!! CGATTCTCTTAAATTATTAT+CGG + Chr6:21910670-21910689 None:intergenic 20.0%
!! CTGGTTATTAATTACAAAAA+GGG + Chr6:21910950-21910969 None:intergenic 20.0%
!! GAAAAAAGTTAAATACATGT+TGG - Chr6:21911518-21911537 MsG0680031538.01.T01:intron 20.0%
!! TACTTACTACTTTATAATGA+CGG - Chr6:21910631-21910650 MsG0680031538.01.T01:intron 20.0%
!! TATTTCATTCAATCAAATAC+AGG + Chr6:21912075-21912094 None:intergenic 20.0%
!! TTATTATGTGTTGTCAATAA+CGG - Chr6:21911215-21911234 MsG0680031538.01.T01:intron 20.0%
!! TTCAAATTCTACTATGATAT+AGG - Chr6:21911916-21911935 MsG0680031538.01.T01:intron 20.0%
!!! AATCAATAACACTTTGAAAA+AGG + Chr6:21911657-21911676 None:intergenic 20.0%
!!! ATCAATAACACTTTGAAAAA+GGG + Chr6:21911656-21911675 None:intergenic 20.0%
!!! ATCCATAAATATTTTTCCTA+TGG - Chr6:21911106-21911125 MsG0680031538.01.T01:intron 20.0%
!!! TCAAAGTATATGTTTTTCAA+TGG + Chr6:21911481-21911500 None:intergenic 20.0%
!!! TTTTTCATTCAATCAAATTG+AGG + Chr6:21911504-21911523 None:intergenic 20.0%
! AAACTCTCATCTTGATTTAA+TGG - Chr6:21911594-21911613 MsG0680031538.01.T01:intron 25.0%
! ATGGTTAAATGTTTGATTAG+TGG - Chr6:21913153-21913172 MsG0680031538.01.T01:intron 25.0%
! ATTAGCCACATAACTAAAAT+GGG + Chr6:21912431-21912450 None:intergenic 25.0%
! ATTAGTTAGATGATTATGGT+TGG + Chr6:21912513-21912532 None:intergenic 25.0%
! CCTATTTAACACTAACAATT+CGG + Chr6:21910900-21910919 None:intergenic 25.0%
! GACAACACTTTCTATTAAAT+AGG - Chr6:21911869-21911888 MsG0680031538.01.T01:intron 25.0%
! GAGAATTAGTTAGATGATTA+TGG + Chr6:21912517-21912536 None:intergenic 25.0%
! GATTCACTATTTAGTACAAA+GGG + Chr6:21911306-21911325 None:intergenic 25.0%
! GCTGGTTATTAATTACAAAA+AGG + Chr6:21910951-21910970 None:intergenic 25.0%
! TAAAGATTATGATTCCAATG+AGG - Chr6:21910976-21910995 MsG0680031538.01.T01:intron 25.0%
! TAACTAATTCTCATCTAACT+AGG - Chr6:21912525-21912544 MsG0680031538.01.T01:intron 25.0%
! TAAGAAGTCATTTGCTTATA+GGG - Chr6:21912548-21912567 MsG0680031538.01.T01:intron 25.0%
! TAGTTTATTACGATAGTGAT+AGG - Chr6:21910447-21910466 MsG0680031538.01.T01:CDS 25.0%
! TATTAGCCACATAACTAAAA+TGG + Chr6:21912432-21912451 None:intergenic 25.0%
! TGATTAAGGAAATGACAATA+GGG - Chr6:21913057-21913076 MsG0680031538.01.T01:intron 25.0%
! TGATTCACTATTTAGTACAA+AGG + Chr6:21911307-21911326 None:intergenic 25.0%
! TTATTCAGTATTGTCAATAG+CGG - Chr6:21911794-21911813 MsG0680031538.01.T01:intron 25.0%
! TTGATTAAGGAAATGACAAT+AGG - Chr6:21913056-21913075 MsG0680031538.01.T01:intron 25.0%
! TTTGTAATTAATAACCAGCA+AGG - Chr6:21910952-21910971 MsG0680031538.01.T01:intron 25.0%
!! AAAGAAAATTGCGATTTGTT+AGG - Chr6:21910352-21910371 MsG0680031538.01.T01:CDS 25.0%
!! ATCTTGTTATGTCATTTGAA+GGG - Chr6:21911442-21911461 MsG0680031538.01.T01:intron 25.0%
!! ATTTCAGAGAATGTTGATTA+AGG - Chr6:21913043-21913062 MsG0680031538.01.T01:intron 25.0%
!! TATCTTGTTATGTCATTTGA+AGG - Chr6:21911441-21911460 MsG0680031538.01.T01:intron 25.0%
!! TTAGAATTTTTCCTAGGTTT+TGG - Chr6:21910124-21910143 MsG0680031538.01.T01:CDS 25.0%
!!! AAGTGTTATTGACATTTTTG+TGG - Chr6:21911078-21911097 MsG0680031538.01.T01:intron 25.0%
!!! CTCTGAAATTTAGATTTTTG+TGG + Chr6:21913032-21913051 None:intergenic 25.0%
!!! TATGATAGTTCTAACTTCTA+AGG - Chr6:21910402-21910421 MsG0680031538.01.T01:CDS 25.0%
!!! TGACATGTTTTGAAAGATAT+GGG - Chr6:21911756-21911775 MsG0680031538.01.T01:intron 25.0%
!!! TTTGGATTAGAATTTTTCCT+AGG - Chr6:21910118-21910137 MsG0680031538.01.T01:exon 25.0%
AAACTATGAGGAATTCGTTA+AGG - Chr6:21912967-21912986 MsG0680031538.01.T01:intron 30.0%
AACGGATCAAAGCAAATAAT+GGG - Chr6:21911233-21911252 MsG0680031538.01.T01:intron 30.0%
ACCATTCACCAAAATATGAA+TGG + Chr6:21913282-21913301 None:intergenic 30.0%
ATCATAATCTTTATCCTTGC+TGG + Chr6:21910969-21910988 None:intergenic 30.0%
ATGACTTTGATTACAAGTGT+TGG + Chr6:21910757-21910776 None:intergenic 30.0%
ATGTGGCTTATATACTAGTA+GGG - Chr6:21911549-21911568 MsG0680031538.01.T01:intron 30.0%
CCGAATTGTTAGTGTTAAAT+AGG - Chr6:21910897-21910916 MsG0680031538.01.T01:intron 30.0%
GATTAAGGAAATGACAATAG+GGG - Chr6:21913058-21913077 MsG0680031538.01.T01:intron 30.0%
GTAAGAAGTCATTTGCTTAT+AGG - Chr6:21912547-21912566 MsG0680031538.01.T01:intron 30.0%
TATGTGGCTTATATACTAGT+AGG - Chr6:21911548-21911567 MsG0680031538.01.T01:intron 30.0%
TATTCAGTATTGTCAATAGC+GGG - Chr6:21911795-21911814 MsG0680031538.01.T01:intron 30.0%
TGATGGTCAAATAAACTATG+AGG - Chr6:21912955-21912974 MsG0680031538.01.T01:intron 30.0%
TGGTTCAGATACTTGAAAAA+TGG - Chr6:21912370-21912389 MsG0680031538.01.T01:intron 30.0%
TTCACCAAAATATGAATGGT+AGG + Chr6:21913278-21913297 None:intergenic 30.0%
TTTAGAGAGAGAAACTGAAT+CGG + Chr6:21909832-21909851 None:intergenic 30.0%
! ACATGTTGGCTATATTTATG+TGG - Chr6:21911532-21911551 MsG0680031538.01.T01:intron 30.0%
! AGTTCCTACCATTCATATTT+TGG - Chr6:21913271-21913290 MsG0680031538.01.T01:five_prime_UTR 30.0%
! ATTCGTAGATATTTTGCCTA+TGG - Chr6:21911688-21911707 MsG0680031538.01.T01:intron 30.0%
! TAACGGATCAAAGCAAATAA+TGG - Chr6:21911232-21911251 MsG0680031538.01.T01:intron 30.0%
!! GATTGATTTGTGATGTGATT+TGG - Chr6:21910100-21910119 MsG0680031538.01.T01:three_prime_UTR 30.0%
!! TTTTGAGAAACATGACATGA+TGG - Chr6:21911156-21911175 MsG0680031538.01.T01:intron 30.0%
!!! ACCATTCATATTTTGGTGAA+TGG - Chr6:21913278-21913297 MsG0680031538.01.T01:five_prime_UTR 30.0%
!!! GATTTCCCATTTTAGTTATG+TGG - Chr6:21912423-21912442 MsG0680031538.01.T01:intron 30.0%
!!! GTGACATGTTTTGAAAGATA+TGG - Chr6:21911755-21911774 MsG0680031538.01.T01:intron 30.0%
!!! TGTATGAGTTTTGAGAAACA+TGG - Chr6:21911729-21911748 MsG0680031538.01.T01:intron 30.0%
!!! TTTGTGATGCGATTTTGATT+AGG - Chr6:21910027-21910046 MsG0680031538.01.T01:three_prime_UTR 30.0%
ACACAACACTGGTAGTAATT+TGG + Chr6:21910833-21910852 None:intergenic 35.0%
AGCTTTCAGCTTATTCGATA+AGG - Chr6:21909925-21909944 MsG0680031538.01.T01:three_prime_UTR 35.0%
ATCAATGAAGTAGATGCTGA+TGG - Chr6:21912713-21912732 MsG0680031538.01.T01:intron 35.0%
ATGAATCTTCAATGAAACGC+TGG + Chr6:21909767-21909786 None:intergenic 35.0%
ATGATTCCAATGAGGAAGTA+AGG - Chr6:21910984-21911003 MsG0680031538.01.T01:intron 35.0%
ATGTCAGTGTTGTGTTAGTA+TGG - Chr6:21910706-21910725 MsG0680031538.01.T01:intron 35.0%
CGATAGTGATAGGTAAATAC+TGG - Chr6:21910457-21910476 MsG0680031538.01.T01:CDS 35.0%
GAACTCTCACCTTGATATAA+TGG - Chr6:21911016-21911035 MsG0680031538.01.T01:intron 35.0%
GCAATGATTACTACAAAGCA+AGG + Chr6:21913110-21913129 None:intergenic 35.0%
TAAACAAACTCACAAGCCAT+AGG + Chr6:21911707-21911726 None:intergenic 35.0%
TAAACAAGCTCACAAACCAT+AGG + Chr6:21911125-21911144 None:intergenic 35.0%
TATATATGGTGTGAACTTGC+AGG - Chr6:21912611-21912630 MsG0680031538.01.T01:intron 35.0%
TCAAAGGAAAACCAAAACCT+AGG + Chr6:21910138-21910157 None:intergenic 35.0%
TCAATGAAGTAGATGCTGAT+GGG - Chr6:21912714-21912733 MsG0680031538.01.T01:intron 35.0%
TGATTCCAATGAGGAAGTAA+GGG - Chr6:21910985-21911004 MsG0680031538.01.T01:intron 35.0%
TTCAGCTTATTCGATAAGGA+TGG - Chr6:21909929-21909948 MsG0680031538.01.T01:three_prime_UTR 35.0%
! GTTTTTGACAAGGATCAGAA+TGG - Chr6:21912830-21912849 MsG0680031538.01.T01:intron 35.0%
!! ATTATGGTTGGTTTACATCC+TGG + Chr6:21912501-21912520 None:intergenic 35.0%
AACTCAGTGTTGTCGAATAG+AGG + Chr6:21911372-21911391 None:intergenic 40.0%
AAGAAGAAGAAAAGCGACGA+TGG - Chr6:21909862-21909881 MsG0680031538.01.T01:three_prime_UTR 40.0%
AAGGAAATGACAATAGGGGA+GGG - Chr6:21913062-21913081 MsG0680031538.01.T01:intron 40.0%
ACACTAACAATTCGGACCAA+AGG + Chr6:21910892-21910911 None:intergenic 40.0%
ACCTATGCAGTACAACGATT+CGG + Chr6:21910589-21910608 None:intergenic 40.0%
ACGTGGCTTATATACGAGAA+GGG - Chr6:21912204-21912223 MsG0680031538.01.T01:intron 40.0%
AGCTTGATCTCATAACCTCA+AGG - Chr6:21912343-21912362 MsG0680031538.01.T01:intron 40.0%
AGTTGAATACACACTGACAC+TGG - Chr6:21912094-21912113 MsG0680031538.01.T01:intron 40.0%
AGTTTCTTAACCTCATGGCA+AGG - Chr6:21912759-21912778 MsG0680031538.01.T01:intron 40.0%
ATCACATGTCGATGTCATGT+TGG + Chr6:21910788-21910807 None:intergenic 40.0%
ATGTGGCTAATACACTAGCA+GGG - Chr6:21912440-21912459 MsG0680031538.01.T01:intron 40.0%
CCATAATCATCTTACTAGCC+AGG - Chr6:21912480-21912499 MsG0680031538.01.T01:intron 40.0%
CCATGAGGTTAAGAAACTCA+GGG + Chr6:21912757-21912776 None:intergenic 40.0%
CCTGGCTAGTAAGATGATTA+TGG + Chr6:21912483-21912502 None:intergenic 40.0%
CTTATCCCTTACTTCCTCAT+TGG + Chr6:21910993-21911012 None:intergenic 40.0%
CTTGATCTCATAACCTCAAG+GGG - Chr6:21912345-21912364 MsG0680031538.01.T01:intron 40.0%
GAACTGTTATGCGTTCATTG+GGG - Chr6:21912657-21912676 MsG0680031538.01.T01:intron 40.0%
GCTTGATCTCATAACCTCAA+GGG - Chr6:21912344-21912363 MsG0680031538.01.T01:intron 40.0%
GGAACTGTTATGCGTTCATT+GGG - Chr6:21912656-21912675 MsG0680031538.01.T01:intron 40.0%
GGAATTCGTTAAGGTCATGA+TGG - Chr6:21912976-21912995 MsG0680031538.01.T01:intron 40.0%
TAAGGAAATGACAATAGGGG+AGG - Chr6:21913061-21913080 MsG0680031538.01.T01:intron 40.0%
TACGTGGCTTATATACGAGA+AGG - Chr6:21912203-21912222 MsG0680031538.01.T01:intron 40.0%
TAGTAGGGTGAGAGAAGTAA+GGG - Chr6:21911564-21911583 MsG0680031538.01.T01:intron 40.0%
TATGTGGCTAATACACTAGC+AGG - Chr6:21912439-21912458 MsG0680031538.01.T01:intron 40.0%
TCTCCAGCACTTACTAACAT+GGG + Chr6:21912142-21912161 None:intergenic 40.0%
TCTTCTTGAATGGTGACAAG+AGG - Chr6:21913363-21913382 MsG0680031538.01.T01:five_prime_UTR 40.0%
TGATCAGATCTCTGAGTTCA+AGG - Chr6:21909901-21909920 MsG0680031538.01.T01:three_prime_UTR 40.0%
TGGAACTGTTATGCGTTCAT+TGG - Chr6:21912655-21912674 MsG0680031538.01.T01:intron 40.0%
TTATTCGATAAGGATGGCGA+TGG - Chr6:21909935-21909954 MsG0680031538.01.T01:three_prime_UTR 40.0%
TTCGGATCGAATGCATAAAG+TGG + Chr6:21910571-21910590 None:intergenic 40.0%
TTGAAAAAGGGTTGCAGATG+TGG + Chr6:21911644-21911663 None:intergenic 40.0%
!! ATAGAGGTGCTACATCATAG+TGG + Chr6:21911356-21911375 None:intergenic 40.0%
!! CATCTCATCGACTTCTTCAT+CGG + Chr6:21912912-21912931 None:intergenic 40.0%
!! TACAAGTGTTGGTGCTACAA+AGG + Chr6:21910746-21910765 None:intergenic 40.0%
ACGTAACAATGCCAACAGCA+AGG + Chr6:21912188-21912207 None:intergenic 45.0%
AGAAGGGTGAGAGATGTAAG+TGG - Chr6:21912220-21912239 MsG0680031538.01.T01:intron 45.0%
AGGAAATGACAATAGGGGAG+GGG - Chr6:21913063-21913082 MsG0680031538.01.T01:intron 45.0%
AGTAGGGTGAGAGAAGTAAG+GGG - Chr6:21911565-21911584 MsG0680031538.01.T01:intron 45.0%
CACTGTAGTCTGTAGCATAG+TGG + Chr6:21911832-21911851 None:intergenic 45.0%
CATAACAGTTCCAAGCTCCT+TGG + Chr6:21912648-21912667 None:intergenic 45.0%
CCCTGAGTTTCTTAACCTCA+TGG - Chr6:21912754-21912773 MsG0680031538.01.T01:intron 45.0%
CGTAACAATGCCAACAGCAA+GGG + Chr6:21912187-21912206 None:intergenic 45.0%
CTAGTAGGGTGAGAGAAGTA+AGG - Chr6:21911563-21911582 MsG0680031538.01.T01:intron 45.0%
CTCTCCAGCACTTACTAACA+TGG + Chr6:21912143-21912162 None:intergenic 45.0%
GAAGTAGATGCTGATGGGAA+TGG - Chr6:21912719-21912738 MsG0680031538.01.T01:intron 45.0%
GAGAAACATGACATGATGGC+AGG - Chr6:21911160-21911179 MsG0680031538.01.T01:intron 45.0%
GCCATGAGGTTAAGAAACTC+AGG + Chr6:21912758-21912777 None:intergenic 45.0%
GTGTTAGTATGGACACTCTC+CGG - Chr6:21910717-21910736 MsG0680031538.01.T01:intron 45.0%
TCCGAATCGTTGTACTGCAT+AGG - Chr6:21910585-21910604 MsG0680031538.01.T01:intron 45.0%
! CTTACTAACATGGGTGCTGT+TGG + Chr6:21912133-21912152 None:intergenic 45.0%
! TGCTATTGGTTGTGGTCGAA+TGG - Chr6:21913186-21913205 MsG0680031538.01.T01:CDS 45.0%
! TTGCTGTTGGCATTGTTACG+TGG - Chr6:21912187-21912206 MsG0680031538.01.T01:intron 45.0%
!! CATGTTAGTAAGTGCTGGAG+AGG - Chr6:21912141-21912160 MsG0680031538.01.T01:intron 45.0%
!! GGCAGGTGTTGAAAGATACT+AGG - Chr6:21911177-21911196 MsG0680031538.01.T01:intron 45.0%
!! GTATGTGTGACTAGTCTGTG+TGG - Chr6:21912304-21912323 MsG0680031538.01.T01:intron 45.0%
AGGGTGAGAGATGTAAGTGG+TGG - Chr6:21912223-21912242 MsG0680031538.01.T01:intron 50.0%
AGTCGATGAGATGATCCGTG+AGG - Chr6:21912919-21912938 MsG0680031538.01.T01:intron 50.0%
ATCCGTGAGGCTGATGTTGA+TGG - Chr6:21912932-21912951 MsG0680031538.01.T01:intron 50.0%
ATTGGGGCAAAACCCAACTG+AGG - Chr6:21912673-21912692 MsG0680031538.01.T01:intron 50.0%
CACCATCAACATCAGCCTCA+CGG + Chr6:21912937-21912956 None:intergenic 50.0%
CAGACACACAGACACAACAC+TGG + Chr6:21910844-21910863 None:intergenic 50.0%
CCTCATGGCAAGGAAGATGA+AGG - Chr6:21912769-21912788 MsG0680031538.01.T01:intron 50.0%
CCTTCATCTTCCTTGCCATG+AGG + Chr6:21912772-21912791 None:intergenic 50.0%
CGTCATGTGATGACCAACCT+TGG - Chr6:21912875-21912894 MsG0680031538.01.T01:intron 50.0%
CTGTGTCAGTGCTTCATAGC+CGG - Chr6:21910861-21910880 MsG0680031538.01.T01:intron 50.0%
GCACCCATGTTAGTAAGTGC+TGG - Chr6:21912136-21912155 MsG0680031538.01.T01:intron 50.0%
GGAAATGACAATAGGGGAGG+GGG - Chr6:21913064-21913083 MsG0680031538.01.T01:intron 50.0%
GTGGTAAGTCCTGCTGCTAT+TGG - Chr6:21913172-21913191 MsG0680031538.01.T01:CDS 50.0%
TATCTGAACCATGCCCCTTG+AGG + Chr6:21912361-21912380 None:intergenic 50.0%
TCTCATAACCTCAAGGGGCA+TGG - Chr6:21912350-21912369 MsG0680031538.01.T01:intron 50.0%
TGCAGGTTGCATCACAACCA+AGG - Chr6:21912628-21912647 MsG0680031538.01.T01:intron 50.0%
TGCATCACAACCAAGGAGCT+TGG - Chr6:21912635-21912654 MsG0680031538.01.T01:intron 50.0%
TGCTGGAGAGGAGTAACACT+TGG - Chr6:21912153-21912172 MsG0680031538.01.T01:intron 50.0%
! AGTCCTGCTGCTATTGGTTG+TGG - Chr6:21913178-21913197 MsG0680031538.01.T01:CDS 50.0%
! GAGAGATGTAAGTGGTGGAG+AGG - Chr6:21912228-21912247 MsG0680031538.01.T01:intron 50.0%
!! AGGAGCTGAAAGAGGCGTTT+CGG - Chr6:21912807-21912826 MsG0680031538.01.T01:intron 50.0%
!! GAGGCTGATGTTGATGGTGA+TGG - Chr6:21912938-21912957 MsG0680031538.01.T01:intron 50.0%
!! GTTGGTGCTACAAAGGTGTC+CGG + Chr6:21910739-21910758 None:intergenic 50.0%
!!! GGCGTTTCGGGTTTTTGACA+AGG - Chr6:21912820-21912839 MsG0680031538.01.T01:intron 50.0%
CCTGAAGCTCTGCCTCAGTT+GGG + Chr6:21912688-21912707 None:intergenic 55.0%
CGACCACAACCAATAGCAGC+AGG + Chr6:21913184-21913203 None:intergenic 55.0%
TCCTGAAGCTCTGCCTCAGT+TGG + Chr6:21912689-21912708 None:intergenic 55.0%
TTCATAGCCGGACACGCCTT+TGG - Chr6:21910873-21910892 MsG0680031538.01.T01:intron 55.0%
TTTCAGCTCCTCCTCGGAGT+CGG + Chr6:21912798-21912817 None:intergenic 55.0%
! ATTCGGACCAAAGGCGTGTC+CGG + Chr6:21910883-21910902 None:intergenic 55.0%
! GGATGCGTTACCCTTGCTGT+TGG - Chr6:21912174-21912193 MsG0680031538.01.T01:intron 55.0%
!! GGAGCTGAAAGAGGCGTTTC+GGG - Chr6:21912808-21912827 MsG0680031538.01.T01:intron 55.0%
CATCGGTGAGCTTCTCGCCA+AGG + Chr6:21912895-21912914 None:intergenic 60.0%
CCCAACTGAGGCAGAGCTTC+AGG - Chr6:21912685-21912704 MsG0680031538.01.T01:intron 60.0%
CGCCTCTTTCAGCTCCTCCT+CGG + Chr6:21912804-21912823 None:intergenic 60.0%
CTCCGAGGAGGAGCTGAAAG+AGG - Chr6:21912799-21912818 MsG0680031538.01.T01:intron 60.0%
GGTGAGCTTCTCGCCAAGGT+TGG + Chr6:21912891-21912910 None:intergenic 60.0%
!! GATGAAGGACACCGACTCCG+AGG - Chr6:21912784-21912803 MsG0680031538.01.T01:intron 60.0%
!! GAAGGACACCGACTCCGAGG+AGG - Chr6:21912787-21912806 MsG0680031538.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 21909740 21913388 21909740 ID=MsG0680031538.01;Name=MsG0680031538.01
Chr6 mRNA 21909740 21913388 21909740 ID=MsG0680031538.01.T01;Parent=MsG0680031538.01;Name=MsG0680031538.01.T01;_AED=0.49;_eAED=0.49;_QI=141|1|1|1|1|1|2|382|149
Chr6 exon 21909740 21910495 21909740 ID=MsG0680031538.01.T01:exon:13795;Parent=MsG0680031538.01.T01
Chr6 exon 21913172 21913388 21913172 ID=MsG0680031538.01.T01:exon:13794;Parent=MsG0680031538.01.T01
Chr6 five_prime_UTR 21913248 21913388 21913248 ID=MsG0680031538.01.T01:five_prime_utr;Parent=MsG0680031538.01.T01
Chr6 CDS 21913172 21913247 21913172 ID=MsG0680031538.01.T01:cds;Parent=MsG0680031538.01.T01
Chr6 CDS 21910122 21910495 21910122 ID=MsG0680031538.01.T01:cds;Parent=MsG0680031538.01.T01
Chr6 three_prime_UTR 21909740 21910121 21909740 ID=MsG0680031538.01.T01:three_prime_utr;Parent=MsG0680031538.01.T01
Gene Sequence

>MsG0680031538.01.T01

ATGGCAGATCAACTCACAGATGATCAGATCTCTGAGTTCAAGGAAGCTTTCAGCTTATTCGATAAGGATGGCGATGGTTGCATCACAACCAAGGAGCTTGGAACTGTTATGCGTTCATTGGGGCAAAACCCAACTGAGGCAGAGCTTCAGGACATGATCAATGAAGTAGATGCTGATGGGAATGGTACTATTGACTTCCCTGAGTTTCTTAACCTCATGGCAAGGAAGATGAAGGACACCGACTCCGAGGAGGAGCTGAAAGAGGCGTTTCGGGTTTTTGACAAGGATCAGAATGGTTTCATTTCTGCTGCTGAGCTTCGTCATGTGATGACCAACCTTGGCGAGAAGCTCACCGATGAAGAAGTCGATGAGATGATCCGTGAGGCTGATGTTGATGGTGATGGTCAAATAAACTATGAGGAATTCGTTAAGGTCATGATGGCTAAATGA

Protein sequence

>MsG0680031538.01.T01

MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*