AlfalfaGEDB | MsG0680031469.01

M. sativa cultivar ZhongmuNo.1 / MsG0680031469.01

KEGG: -
GO: GO:0016491
PFAM: PF13561

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031469.01.T01	XP_003618852.1	96.296	270	10	0	1	270	1	270	0	528

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031469.01.T01	A0A3Q8GYY4	56.917	253	106	2	13	262	7	259	3.48E-93	278

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031469.01.T01	G7KNP7	96.296	270	10	0	1	270	1	270	0.0	528

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047899.01	MsG0680031469.01	0.819489	1.130900e-52	8.715134e-50
MsG0080048727.01	MsG0680031469.01	0.807709	4.428421e-50	2.483930e-47
MsG0080048773.01	MsG0680031469.01	0.860092	2.627761e-63	7.099380e-60
MsG0080048802.01	MsG0680031469.01	0.853546	2.224952e-61	4.824952e-58
MsG0080048845.01	MsG0680031469.01	0.810355	1.201107e-50	7.224218e-48
MsG0080048849.01	MsG0680031469.01	0.813118	3.009600e-51	1.948181e-48
MsG0080048876.01	MsG0680031469.01	0.839752	1.312800e-57	1.830415e-54
MsG0080048878.01	MsG0680031469.01	0.824959	6.082575e-54	5.469393e-51
MsG0080048912.01	MsG0680031469.01	0.811588	6.495268e-51	4.036416e-48
MsG0080048938.01	MsG0680031469.01	0.837240	5.842743e-57	7.542907e-54

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031469.01.T01	MTR_6g023910	96.296	270	10	0	1	270	1	270	0.0	528
MsG0680031469.01.T01	MTR_6g023610	81.413	269	50	0	1	269	1	269	2.95e-163	453
MsG0680031469.01.T01	MTR_6g023590	73.208	265	71	0	1	265	1	265	7.53e-144	404
MsG0680031469.01.T01	MTR_6g023600	74.340	265	68	0	1	265	1	265	8.60e-140	394
MsG0680031469.01.T01	MTR_6g023990	72.556	266	72	1	1	265	1	266	9.94e-140	394
MsG0680031469.01.T01	MTR_6g023950	73.180	261	70	0	1	261	1	261	3.93e-135	382
MsG0680031469.01.T01	MTR_6g023600	72.453	265	67	1	1	265	1	259	3.86e-133	377
MsG0680031469.01.T01	MTR_7g110130	50.198	253	125	1	9	261	2	253	8.00e-81	244
MsG0680031469.01.T01	MTR_2g090165	49.802	253	125	2	9	261	2	252	1.79e-80	243
MsG0680031469.01.T01	MTR_7g110140	47.036	253	132	2	9	261	2	252	1.98e-74	228

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031469.01.T01	AT2G47140	48.617	253	128	2	9	261	2	252	1.14e-78	239
MsG0680031469.01.T01	AT2G47130	48.249	257	122	5	9	261	2	251	4.44e-73	224
MsG0680031469.01.T01	AT3G29260	47.860	257	123	5	9	261	2	251	1.27e-71	221
MsG0680031469.01.T01	AT2G47120	47.036	253	130	4	9	261	2	250	1.52e-71	221
MsG0680031469.01.T01	AT3G29250	47.287	258	128	5	7	261	36	288	1.63e-70	219
MsG0680031469.01.T01	AT3G29250	47.266	256	127	5	9	261	2	252	1.73e-70	218
MsG0680031469.01.T01	AT2G47120	46.800	250	129	4	12	261	6	251	2.39e-70	218
MsG0680031469.01.T01	AT3G29250	46.923	260	128	6	7	261	36	290	1.56e-68	214
MsG0680031469.01.T01	AT3G51680	42.238	277	138	5	1	259	20	292	3.46e-63	201
MsG0680031469.01.T01	AT3G26760	41.045	268	147	6	7	266	30	294	3.30e-60	193

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Find 74 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGCGGCACGTGCGA+TGG	0.581499	6:-20877993	MsG0680031469.01.T01:CDS
AAAATAGCCATTGTCACCGG+AGG	0.684966	6:-20878593	MsG0680031469.01.T01:CDS
AAATTCCTAACACTTCTTAG+AGG	0.387376	6:-20877498	MsG0680031469.01.T01:three_prime_UTR
AACAGCAGTCTTAGGTTAGC+AGG	0.489763	6:-20878617	MsG0680031469.01.T01:CDS
AACGGTCAAAACTTATGGAC+AGG	0.523815	6:-20878387	MsG0680031469.01.T01:intron
AACTTGCAAAGCATGGAATA+AGG	0.289760	6:-20877841	MsG0680031469.01.T01:CDS
AATGAAGTGGCTGCATCTAT+TGG	0.423417	6:-20878479	MsG0680031469.01.T01:CDS
AATGAATCTGACTTTGTCAC+TGG	0.530339	6:-20877656	MsG0680031469.01.T01:CDS
AATGGTGTTGCTAATCCATT+TGG	0.510778	6:+20877803	None:intergenic
ACATGCGGCACGTGCGATGG+TGG	0.538249	6:-20877990	MsG0680031469.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCCTAACACTTCTTAG+AGG	-	Chr6:20878481-20878500	MsG0680031469.01.T01:CDS	30.0%
AACATAATATCTACCTGTTG+TGG	+	Chr6:20877858-20877877	None:intergenic	30.0%
CAAAAATCTCGTTCAATCAA+CGG	-	Chr6:20877574-20877593	MsG0680031469.01.T01:three_prime_UTR	30.0%
GATATTATGTTTAGCAATGC+TGG	-	Chr6:20877867-20877886	MsG0680031469.01.T01:CDS	30.0%
TCTAGCAATTTCATAGTCAA+TGG	+	Chr6:20878197-20878216	None:intergenic	30.0%
AACTTGCAAAGCATGGAATA+AGG	-	Chr6:20878138-20878157	MsG0680031469.01.T01:intron	35.0%
AATGAATCTGACTTTGTCAC+TGG	-	Chr6:20878323-20878342	MsG0680031469.01.T01:intron	35.0%
ACTATGAAATTGCTAGATGC+AGG	-	Chr6:20878200-20878219	MsG0680031469.01.T01:intron	35.0%
ACTTGCAAAGCATGGAATAA+GGG	-	Chr6:20878139-20878158	MsG0680031469.01.T01:intron	35.0%
AGTGACAAAGTCAGATTCAT+TGG	+	Chr6:20878324-20878343	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	20877298	20878703	20877298	ID=MsG0680031469.01;Name=MsG0680031469.01
Chr6	mRNA	20877298	20878703	20877298	ID=MsG0680031469.01.T01;Parent=MsG0680031469.01;Name=MsG0680031469.01.T01;_AED=0.49;_eAED=0.49;_QI=43\|1\|1\|1\|1\|1\|2\|300\|270
Chr6	exon	20877298	20878137	20877298	ID=MsG0680031469.01.T01:exon:13252;Parent=MsG0680031469.01.T01
Chr6	exon	20878388	20878703	20878388	ID=MsG0680031469.01.T01:exon:13251;Parent=MsG0680031469.01.T01
Chr6	five_prime_UTR	20878661	20878703	20878661	ID=MsG0680031469.01.T01:five_prime_utr;Parent=MsG0680031469.01.T01
Chr6	CDS	20878388	20878660	20878388	ID=MsG0680031469.01.T01:cds;Parent=MsG0680031469.01.T01
Chr6	CDS	20877598	20878137	20877598	ID=MsG0680031469.01.T01:cds;Parent=MsG0680031469.01.T01
Chr6	three_prime_UTR	20877298	20877597	20877298	ID=MsG0680031469.01.T01:three_prime_utr;Parent=MsG0680031469.01.T01

Gene Sequence

>MsG0680031469.01.T01

ATGGCAGAATCTTCACTCACTAACAGCAGTCTTAGGTTAGCAGGCAAAATAGCCATTGTCACCGGAGGTGCCAGCGGCATCGGCAAAGCGACGGCGCATGTCTTTGCCGAACAAGGTGCACGTATGGTGGTAATCGCCGACATCCAAGATGAGTTGGGCAATGAAGTGGCTGCATCTATTGGTGGCCATAGGTGCACCTATGTTCACTGTGACGTAGCAAATGAAGATCAAGTCAAAAATCTCGTTCAATCAACGGTCAAAACTTATGGACAGGTAGATATTATGTTTAGCAATGCTGGGATTGCAAGTCCATCTGATCAGACTGTGTTGGAATTCGACATTTCTCAAGCTGACCAGTTGTTCTCAGTTAACGTTCGAGGAATGGCATTGTGCGTAAAACATGCGGCACGTGCGATGGTGGACGGGTGCGTGAGGGGTAGCATTGTGTGCACTGCTAGCGTTGCCGGTAGCAACGGTAGCATGAAGTTAACGGATTACGTAATGTCGAAGCACGCAATAATAGGGTTGATGCGTTCAGCTAGTAAGCAACTTGCAAAGCATGGAATAAGGGTGAATTGTGTATCACCAAATGGATTAGCAACACCATTGACTATGAAATTGCTAGATGCAGGTGAAGAGACAGTTGATTTGATTTTTGGAGAATACAAGAGGTTGGAAGGAGTGGTTCTCAGCACTAAACATGTGGCAGATGCTGTGTTGTTCTTGGTATCCAATGAATCTGACTTTGTCACTGGCCTTGATCTTCGTGTGGATGGTAGCTTTCTTGATGGCAAATCTGAACTAGTATTTTAA

Protein sequence

>MsG0680031469.01.T01

MAESSLTNSSLRLAGKIAIVTGGASGIGKATAHVFAEQGARMVVIADIQDELGNEVAASIGGHRCTYVHCDVANEDQVKNLVQSTVKTYGQVDIMFSNAGIASPSDQTVLEFDISQADQLFSVNVRGMALCVKHAARAMVDGCVRGSIVCTASVAGSNGSMKLTDYVMSKHAIIGLMRSASKQLAKHGIRVNCVSPNGLATPLTMKLLDAGEETVDLIFGEYKRLEGVVLSTKHVADAVLFLVSNESDFVTGLDLRVDGSFLDGKSELVF*