AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048876.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048876.01.T01 MTR_8g009900 97.884 567 12 0 2 568 1 567 0.0 1152
MsG0080048876.01.T01 MTR_8g009900 96.512 430 15 0 2 431 1 430 0.0 868
MsG0080048876.01.T01 MTR_1g085150 26.457 223 133 7 56 268 227 428 2.56e-13 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048876.01.T01 AT5G64050 74.431 571 138 5 3 568 1 568 0.0 886
MsG0080048876.01.T01 AT5G26710 26.724 232 148 7 56 283 214 427 5.16e-13 72.4

Find 22 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGCTTAGAGAAATTAAT+TGG 0.191605 contig503end:+15287 MsG0080048876.01.T01:exon
CTCCTTCACAACATGATCTT+TGG 0.266362 contig503end:-15320 MsG0080048876.01.T01:intergenic
AAACTCCATGGACCAGATAT+TGG 0.289795 contig503end:+15178 MsG0080048876.01.T01:exon
AACTCCATGGACCAGATATT+GGG 0.299502 contig503end:+15179 MsG0080048876.01.T01:exon
CATTATTACTAAACATTCCT+TGG 0.373898 contig503end:-15483 MsG0080048876.01.T01:intergenic
ACAACAGCTGCCCCAATATC+TGG 0.383804 contig503end:-15190 MsG0080048876.01.T01:intergenic
GTTGTCTTGCTTTATCAAGC+TGG 0.384143 contig503end:+15208 MsG0080048876.01.T01:exon
CTTTATCAAGCTGGGACTAC+TGG 0.394232 contig503end:+15217 MsG0080048876.01.T01:exon
TTGTCTTGCTTTATCAAGCT+GGG 0.434211 contig503end:+15209 MsG0080048876.01.T01:exon
AATGCTTAGAGAAATTAATT+GGG 0.440402 contig503end:+15288 MsG0080048876.01.T01:exon
ATTGTCACAAAGCTAACTTC+AGG 0.482993 contig503end:-15250 MsG0080048876.01.T01:intergenic
CTGCCCCAATATCTGGTCCA+TGG 0.542521 contig503end:-15183 MsG0080048876.01.T01:intergenic
CCACTTCGGCTCCTACTGAC+CGG 0.557406 contig503end:+15154 MsG0080048876.01.T01:exon
AATCACTCTTCATGCCACTT+CGG 0.560806 contig503end:+15140 MsG0080048876.01.T01:exon
CTACTGACCGGAAAACTCCA+TGG 0.570865 contig503end:+15166 MsG0080048876.01.T01:exon
GTCCAAAGATCATGTTGTGA+AGG 0.579139 contig503end:+15318 MsG0080048876.01.T01:exon
CCGGTCAGTAGGAGCCGAAG+TGG 0.598440 contig503end:-15154 MsG0080048876.01.T01:intergenic
TCGTGTTATCAGATAGACCT+TGG 0.607713 contig503end:-15375 MsG0080048876.01.T01:intergenic
TGTTATCAGATAGACCTTGG+AGG 0.624886 contig503end:-15372 MsG0080048876.01.T01:intergenic
TAATTGAGAATTCACCTCCA+AGG 0.626877 contig503end:+15358 MsG0080048876.01.T01:exon
ACTCCATGGACCAGATATTG+GGG 0.653253 contig503end:+15180 MsG0080048876.01.T01:exon
AGGTCTATCTGATAACACGA+TGG 0.724651 contig503end:+15378 MsG0080048876.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAAAAATGGATAA+GGG - contig503end:12357-12376 MsG0080048876.01.T01:intergenic 10.0%
!! ATTATTATTTATTTATTGGA+AGG - contig503end:14088-14107 MsG0080048876.01.T01:intergenic 10.0%
!! TGTAAAAAGTTATTAATATA+GGG + contig503end:13323-13342 MsG0080048876.01.T01:intron 10.0%
!!! AAAAAATCAATTTTTTATTC+TGG + contig503end:10634-10653 MsG0080048876.01.T01:intron 10.0%
!!! AAAAATCAATTTTTTATTCT+GGG + contig503end:10635-10654 MsG0080048876.01.T01:intron 10.0%
!!! AAAAATTCAATTTTTAATTC+TGG + contig503end:10521-10540 MsG0080048876.01.T01:intron 10.0%
!!! AAAAATTCAATTTTTATTTC+TGG + contig503end:10378-10397 MsG0080048876.01.T01:intron 10.0%
!!! AAAATTCAATTTTTAATTCT+GGG + contig503end:10522-10541 MsG0080048876.01.T01:intron 10.0%
!!! AAAATTCAATTTTTATTTCT+GGG + contig503end:10379-10398 MsG0080048876.01.T01:intron 10.0%
!!! AATATATATTTTCAATTTTG+AGG + contig503end:11438-11457 MsG0080048876.01.T01:intron 10.0%
!!! ATTTTTTTTTTTTGATCTTA+GGG + contig503end:13175-13194 MsG0080048876.01.T01:intron 10.0%
!!! GCTTTTTTTTTTTTAAATTT+CGG + contig503end:14616-14635 MsG0080048876.01.T01:intron 10.0%
!!! TATGTATATATTAATCTTTT+TGG + contig503end:14523-14542 MsG0080048876.01.T01:intron 10.0%
!!! TATTTTTTTTTTTTGATCTT+AGG + contig503end:13174-13193 MsG0080048876.01.T01:intron 10.0%
!!! TTTCTTTATACTTTTTAATT+AGG + contig503end:14123-14142 MsG0080048876.01.T01:intron 10.0%
!! AAAAAACAGAATTTGATTAT+GGG + contig503end:10738-10757 MsG0080048876.01.T01:intron 15.0%
!! CTGTAAAAAGTTATTAATAT+AGG + contig503end:13322-13341 MsG0080048876.01.T01:intron 15.0%
!! GATAAAAAAAAAAATGGATA+AGG - contig503end:12358-12377 MsG0080048876.01.T01:intergenic 15.0%
!! TACCAAGATAAAAAAAAAAA+TGG - contig503end:12364-12383 MsG0080048876.01.T01:intergenic 15.0%
!! TCTGAATTACAAATAATTTA+CGG - contig503end:12847-12866 MsG0080048876.01.T01:intergenic 15.0%
!! TTATTTATTCATAGAAAGTA+GGG - contig503end:13899-13918 MsG0080048876.01.T01:intergenic 15.0%
!! TTTATTTATTCATAGAAAGT+AGG - contig503end:13900-13919 MsG0080048876.01.T01:intergenic 15.0%
!!! AAATATGTTGATAATCTTAT+AGG + contig503end:15114-15133 MsG0080048876.01.T01:intron 15.0%
!!! AATATGTTGATAATCTTATA+GGG + contig503end:15115-15134 MsG0080048876.01.T01:intron 15.0%
!!! ATCCATTTTTTTTTTTATCT+TGG + contig503end:12359-12378 MsG0080048876.01.T01:intron 15.0%
!!! GGTTTTCTATTTTTAATATT+GGG + contig503end:10432-10451 MsG0080048876.01.T01:intron 15.0%
!!! TGCAATACATTTTTTTTTTA+TGG - contig503end:13872-13891 MsG0080048876.01.T01:intergenic 15.0%
!!! TTGGGTTTTATTTATATATT+TGG + contig503end:10973-10992 MsG0080048876.01.T01:intron 15.0%
!!! TTTCCTTTATACTTTTAATT+AGG + contig503end:14292-14311 MsG0080048876.01.T01:intron 15.0%
!! AAAAAGCAAAAAGAAATTGA+GGG - contig503end:10351-10370 MsG0080048876.01.T01:intergenic 20.0%
!! AAAGAAAATATAAACGAACA+AGG - contig503end:14909-14928 MsG0080048876.01.T01:intergenic 20.0%
!! AAATGCTTAGAGAAATTAAT+TGG + contig503end:15287-15306 MsG0080048876.01.T01:exon 20.0%
!! AAGAAAATATAAACGAACAA+GGG - contig503end:14908-14927 MsG0080048876.01.T01:intergenic 20.0%
!! AATGCTTAGAGAAATTAATT+GGG + contig503end:15288-15307 MsG0080048876.01.T01:exon 20.0%
!! ATTAATATAGGGACTAAAAT+TGG + contig503end:13334-13353 MsG0080048876.01.T01:intron 20.0%
!! CATATATTGAAAATAGAAAC+AGG + contig503end:11606-11625 MsG0080048876.01.T01:intron 20.0%
!! GAAAAAACAGAATTTGATTA+TGG + contig503end:10737-10756 MsG0080048876.01.T01:intron 20.0%
!! GAGCTTACATTATAAATTAA+AGG - contig503end:13496-13515 MsG0080048876.01.T01:intergenic 20.0%
!! GATATTATAACAACATACAT+TGG + contig503end:11460-11479 MsG0080048876.01.T01:intron 20.0%
!! TACTATATTGAAGATAAAGT+GGG + contig503end:13943-13962 MsG0080048876.01.T01:intron 20.0%
!! TTACTATATTGAAGATAAAG+TGG + contig503end:13942-13961 MsG0080048876.01.T01:intron 20.0%
!! TTTACAATATATTTGACCTA+TGG + contig503end:11683-11702 MsG0080048876.01.T01:intron 20.0%
!!! AATTTTATTTGTCTTTACAC+AGG + contig503end:12129-12148 MsG0080048876.01.T01:intron 20.0%
!!! AGTAATTTTTAAACTTCCTT+TGG - contig503end:12293-12312 MsG0080048876.01.T01:intergenic 20.0%
!!! ATATTTGGTGATATTTGTTT+TGG + contig503end:10988-11007 MsG0080048876.01.T01:intron 20.0%
!!! CTAATTTTGTAATTTTACCA+AGG + contig503end:15466-15485 MsG0080048876.01.T01:exon 20.0%
!!! CTGTTTCTATTTTCAATATA+TGG - contig503end:11608-11627 MsG0080048876.01.T01:intergenic 20.0%
!!! CTTTATACTTTTTAATTAGG+TGG + contig503end:14126-14145 MsG0080048876.01.T01:intron 20.0%
!!! GGGTTTTCTATTTTTAATAT+TGG + contig503end:10431-10450 MsG0080048876.01.T01:intron 20.0%
!!! GTAATTTTTAAACTTCCTTT+GGG - contig503end:12292-12311 MsG0080048876.01.T01:intergenic 20.0%
!!! GTTATGATTTTTTATGTTCT+GGG + contig503end:10553-10572 MsG0080048876.01.T01:intron 20.0%
!!! GTTTTAATTTTGTATGTTCT+GGG + contig503end:10769-10788 MsG0080048876.01.T01:intron 20.0%
!!! TAATTTTTAAACTTCCTTTG+GGG - contig503end:12291-12310 MsG0080048876.01.T01:intergenic 20.0%
!!! TATAATCTTTTATAGCATCT+TGG + contig503end:12937-12956 MsG0080048876.01.T01:intron 20.0%
!!! TCTATTTTTAATATTGGGTT+TGG + contig503end:10437-10456 MsG0080048876.01.T01:intron 20.0%
!!! TGTTTCTTTAATCGAATTTT+TGG + contig503end:14928-14947 MsG0080048876.01.T01:intron 20.0%
!!! TTCTATTTTCAATATATGGA+GGG - contig503end:11604-11623 MsG0080048876.01.T01:intergenic 20.0%
!!! TTTAGTTCCTATATAAATCT+TGG + contig503end:13244-13263 MsG0080048876.01.T01:intron 20.0%
!!! TTTCTATTTTCAATATATGG+AGG - contig503end:11605-11624 MsG0080048876.01.T01:intergenic 20.0%
! AAAAAAAAAATGGATAAGGG+CGG - contig503end:12354-12373 MsG0080048876.01.T01:intergenic 25.0%
! AATAACTACCTAGCATTATT+AGG + contig503end:13613-13632 MsG0080048876.01.T01:CDS 25.0%
! ACAATCAATAAAAGGAGATA+TGG - contig503end:14653-14672 MsG0080048876.01.T01:intergenic 25.0%
! ATAAGGACCAAGATTTATAT+AGG - contig503end:13254-13273 MsG0080048876.01.T01:intergenic 25.0%
! ATCTCATACTTATTCCTAAA+AGG - contig503end:12014-12033 MsG0080048876.01.T01:intergenic 25.0%
! ATCTTAAAGTTGCTTATAAC+AGG + contig503end:13975-13994 MsG0080048876.01.T01:intron 25.0%
! CAATTGTGATTTATTTAGTG+TGG + contig503end:14368-14387 MsG0080048876.01.T01:intron 25.0%
! CACACTAAATAAATCACAAT+TGG - contig503end:14370-14389 MsG0080048876.01.T01:intergenic 25.0%
! CATTATTACTAAACATTCCT+TGG - contig503end:15486-15505 MsG0080048876.01.T01:intergenic 25.0%
! GAAAAAGCAAAAAGAAATTG+AGG - contig503end:10352-10371 MsG0080048876.01.T01:intergenic 25.0%
! GATATTCCTAATTGTATCAT+TGG + contig503end:14545-14564 MsG0080048876.01.T01:intron 25.0%
! GGAATTAATAAACCTACTTA+AGG + contig503end:14411-14430 MsG0080048876.01.T01:intron 25.0%
! TAAACTTGGTTAGTAAATTC+TGG + contig503end:13675-13694 MsG0080048876.01.T01:intron 25.0%
! TAATAAACCTACTTAAGGAT+GGG + contig503end:14416-14435 MsG0080048876.01.T01:CDS 25.0%
! TGGAAAAAGAAAAAACCTTA+AGG + contig503end:11314-11333 MsG0080048876.01.T01:intron 25.0%
! TTAATAAACCTACTTAAGGA+TGG + contig503end:14415-14434 MsG0080048876.01.T01:CDS 25.0%
! TTACTAACCAAGTTTATCAA+GGG - contig503end:13671-13690 MsG0080048876.01.T01:intergenic 25.0%
! TTCAATATAGTAAAACCATG+AGG - contig503end:13935-13954 MsG0080048876.01.T01:intergenic 25.0%
! TTTACTAACCAAGTTTATCA+AGG - contig503end:13672-13691 MsG0080048876.01.T01:intergenic 25.0%
!! AAGTTGTGAAAACATTTTTC+TGG - contig503end:13728-13747 MsG0080048876.01.T01:intergenic 25.0%
!! AGTTTATAACTTTTGTGTGA+CGG + contig503end:12719-12738 MsG0080048876.01.T01:CDS 25.0%
!! ATACAAAATCCCTCTAATTT+TGG - contig503end:11544-11563 MsG0080048876.01.T01:intergenic 25.0%
!! CCACCTAATTAAAAGTATAA+AGG - contig503end:14298-14317 MsG0080048876.01.T01:intergenic 25.0%
!! TACAAAATCCCTCTAATTTT+GGG - contig503end:11543-11562 MsG0080048876.01.T01:intergenic 25.0%
!! TATCTTGGTATTCTTTTTGA+AGG + contig503end:12374-12393 MsG0080048876.01.T01:intron 25.0%
!! TTGTTGTTGTTGTTGTTATT+GGG + contig503end:10955-10974 MsG0080048876.01.T01:intron 25.0%
!! TTTTTGAATGTGTACCTTTT+AGG + contig503end:11997-12016 MsG0080048876.01.T01:intron 25.0%
!!! AAAATTACTGACTTAATACG+AGG + contig503end:12304-12323 MsG0080048876.01.T01:CDS 25.0%
!!! ATATTTGTTTTGGTTGATGA+TGG + contig503end:10998-11017 MsG0080048876.01.T01:intron 25.0%
!!! ATCAAACAGATTGATTTGAT+TGG - contig503end:12802-12821 MsG0080048876.01.T01:intergenic 25.0%
!!! ATCGTTCTTAAAGTTTTATG+AGG + contig503end:13138-13157 MsG0080048876.01.T01:intron 25.0%
!!! ATTCTTTTTGAAGGTATGAT+CGG + contig503end:12383-12402 MsG0080048876.01.T01:intron 25.0%
!!! CAATCATGTTCATTTTTAGA+AGG - contig503end:14571-14590 MsG0080048876.01.T01:intergenic 25.0%
!!! CAATTTTTATTTCTGGGTTT+TGG + contig503end:10385-10404 MsG0080048876.01.T01:intron 25.0%
!!! CCTTTATACTTTTAATTAGG+TGG + contig503end:14295-14314 MsG0080048876.01.T01:intron 25.0%
!!! GGTTATGATTTTTTATGTTC+TGG + contig503end:10552-10571 MsG0080048876.01.T01:intron 25.0%
!!! GGTTTTAATTTTGTATGTTC+TGG + contig503end:10768-10787 MsG0080048876.01.T01:intron 25.0%
!!! GGTTTTCAATTGTTGATTAT+GGG + contig503end:10574-10593 MsG0080048876.01.T01:intron 25.0%
!!! GTTTTGAGTTTTTATGTCAT+GGG + contig503end:10411-10430 MsG0080048876.01.T01:intron 25.0%
!!! TACTTCATTTTTGAACTACA+TGG - contig503end:12421-12440 MsG0080048876.01.T01:intergenic 25.0%
!!! TGTTTTGAGTTTTTATGTCA+TGG + contig503end:10410-10429 MsG0080048876.01.T01:intron 25.0%
!!! TGTTTTGATTTTTTGTGTTC+TGG + contig503end:10461-10480 MsG0080048876.01.T01:intron 25.0%
!!! TTATACTTTTAATTAGGTGG+AGG + contig503end:14298-14317 MsG0080048876.01.T01:intron 25.0%
!!! TTTTTAATTAGGTGGATGAA+TGG + contig503end:14134-14153 MsG0080048876.01.T01:intron 25.0%
!!! TTTTTGATTCCACAAAGTTA+AGG + contig503end:13824-13843 MsG0080048876.01.T01:CDS 25.0%
!!! TTTTTTATTCTGGGTTTGAA+TGG + contig503end:10644-10663 MsG0080048876.01.T01:intron 25.0%
AAAAGTAAAATGACATGCAC+AGG - contig503end:15027-15046 MsG0080048876.01.T01:intergenic 30.0%
AAGGCAGGCATTAATATATA+AGG + contig503end:12893-12912 MsG0080048876.01.T01:CDS 30.0%
AAGTTGGCACAATCAATAAA+AGG - contig503end:14661-14680 MsG0080048876.01.T01:intergenic 30.0%
AATAAGCTGTTTATCCAAAC+AGG + contig503end:11893-11912 MsG0080048876.01.T01:intron 30.0%
AATTTGATTATGGGATTGTC+TGG + contig503end:10747-10766 MsG0080048876.01.T01:intron 30.0%
ACATTAATCCACTGTTTCAA+AGG - contig503end:12531-12550 MsG0080048876.01.T01:intergenic 30.0%
AGCAAACAAATAGTTGAAGA+GGG - contig503end:10310-10329 MsG0080048876.01.T01:intergenic 30.0%
AGTAAATTATCAAAGCGACA+TGG + contig503end:13067-13086 MsG0080048876.01.T01:CDS 30.0%
AGTTGCTTATAACAGGTAAT+AGG + contig503end:13982-14001 MsG0080048876.01.T01:intron 30.0%
ATAAAGCTTCTTCTCTTCTA+AGG + contig503end:13518-13537 MsG0080048876.01.T01:intron 30.0%
ATAACAGGTAATAGGATGTA+TGG + contig503end:13990-14009 MsG0080048876.01.T01:intron 30.0%
ATAAGCTGTTTATCCAAACA+GGG + contig503end:11894-11913 MsG0080048876.01.T01:intron 30.0%
ATATACATGCTTCAAACTAG+AGG - contig503end:12082-12101 MsG0080048876.01.T01:intergenic 30.0%
ATGTCACATAAGCTCAAATA+AGG - contig503end:11722-11741 MsG0080048876.01.T01:intergenic 30.0%
ATTGGATCTTACATCAACAA+AGG - contig503end:14252-14271 MsG0080048876.01.T01:intergenic 30.0%
CACTCGGTTTAAAAATAAGT+GGG - contig503end:11290-11309 MsG0080048876.01.T01:intergenic 30.0%
CATTAATCCACTGTTTCAAA+GGG - contig503end:12530-12549 MsG0080048876.01.T01:intergenic 30.0%
CATTCAAAAAACCAGTTGAA+TGG - contig503end:11987-12006 MsG0080048876.01.T01:intergenic 30.0%
CTCTACATTCTACTTTACAA+AGG + contig503end:14491-14510 MsG0080048876.01.T01:CDS 30.0%
CTTTGTAAAGTAGAATGTAG+AGG - contig503end:14493-14512 MsG0080048876.01.T01:intergenic 30.0%
GAAATTTGTCTTGAGAATTG+AGG + contig503end:10819-10838 MsG0080048876.01.T01:CDS 30.0%
GAATCAAGTATGCAAGTAAT+TGG - contig503end:14270-14289 MsG0080048876.01.T01:intergenic 30.0%
GAGTAAGATTGATGAAGAAA+TGG - contig503end:10150-10169 MsG0080048876.01.T01:intergenic 30.0%
GATTGATGAAGAAATGGAAA+TGG - contig503end:10144-10163 MsG0080048876.01.T01:intergenic 30.0%
GTCACACAAAAGTTATAAAC+TGG - contig503end:12720-12739 MsG0080048876.01.T01:intergenic 30.0%
GTTACATGACATGATTACAA+AGG - contig503end:11215-11234 MsG0080048876.01.T01:intergenic 30.0%
GTTCCTATTAAAGCAGAATA+AGG - contig503end:13271-13290 MsG0080048876.01.T01:intergenic 30.0%
TAAAGCTTCTTCTCTTCTAA+GGG + contig503end:13519-13538 MsG0080048876.01.T01:intron 30.0%
TAGCAAACAAATAGTTGAAG+AGG - contig503end:10311-10330 MsG0080048876.01.T01:intergenic 30.0%
TCTACCAAATCACTCAAATA+AGG - contig503end:11397-11416 MsG0080048876.01.T01:intergenic 30.0%
TCTTCAACTATTTGTTTGCT+AGG + contig503end:10310-10329 MsG0080048876.01.T01:CDS 30.0%
TGACAATCTCTTACTTGTAA+TGG + contig503end:11172-11191 MsG0080048876.01.T01:intron 30.0%
TGCTAACATAGTTGGAATAT+CGG + contig503end:14979-14998 MsG0080048876.01.T01:intron 30.0%
TTATTTGTAATTCAGAGCAG+AGG + contig503end:12851-12870 MsG0080048876.01.T01:intron 30.0%
TTGGATCTTACATCAACAAA+GGG - contig503end:14251-14270 MsG0080048876.01.T01:intergenic 30.0%
TTTCTCATACCTTAACTTTG+TGG - contig503end:13836-13855 MsG0080048876.01.T01:intergenic 30.0%
TTTCTTTGTTAGTGTCTTGA+AGG + contig503end:12638-12657 MsG0080048876.01.T01:intron 30.0%
! ACAAAATCCCTCTAATTTTG+GGG - contig503end:11542-11561 MsG0080048876.01.T01:intergenic 30.0%
! ACTTTAAGAACGATGTAATC+AGG - contig503end:13132-13151 MsG0080048876.01.T01:intergenic 30.0%
! ATTTTTAAACCGAGTGCATT+TGG + contig503end:11294-11313 MsG0080048876.01.T01:intron 30.0%
! ATTTTTGAACTACATGGAGT+AGG - contig503end:12415-12434 MsG0080048876.01.T01:intergenic 30.0%
! CAGTTGACTTATGAATATGA+AGG - contig503end:12466-12485 MsG0080048876.01.T01:intergenic 30.0%
! GTTGTTGTTGTTGTTGTTAT+TGG + contig503end:10954-10973 MsG0080048876.01.T01:intron 30.0%
! TCAATTGTTGATTATGGGTT+TGG + contig503end:10579-10598 MsG0080048876.01.T01:intron 30.0%
! TTCAATATATGGAGGGTTTT+AGG - contig503end:11597-11616 MsG0080048876.01.T01:intergenic 30.0%
! TTTCTTTTTCCAAATGCACT+CGG - contig503end:11306-11325 MsG0080048876.01.T01:intergenic 30.0%
! TTTGATAATTTACTCCGATC+AGG - contig503end:13061-13080 MsG0080048876.01.T01:intergenic 30.0%
! TTTGTGATAATGAGGAGTAA+CGG + contig503end:12690-12709 MsG0080048876.01.T01:CDS 30.0%
!! AAAAACCTTAAGGCTTTGTT+TGG + contig503end:11324-11343 MsG0080048876.01.T01:intron 30.0%
!! AAAACCTTAAGGCTTTGTTT+GGG + contig503end:11325-11344 MsG0080048876.01.T01:intron 30.0%
!! GGGTTTTCAATTGTTGATTA+TGG + contig503end:10573-10592 MsG0080048876.01.T01:intron 30.0%
!! TTATTTTGCATCCATTCAAC+TGG + contig503end:11973-11992 MsG0080048876.01.T01:intron 30.0%
!! TTGGAGATTTTGTGATAATG+AGG + contig503end:12682-12701 MsG0080048876.01.T01:CDS 30.0%
!! TTTTAGTTAGGGAAGCTTAA+GGG + contig503end:11248-11267 MsG0080048876.01.T01:intron 30.0%
!! TTTTTAATTCTGGGTATTGC+TGG + contig503end:10531-10550 MsG0080048876.01.T01:intron 30.0%
!!! ATGTGTGATGTGTTTTAGTT+AGG + contig503end:11236-11255 MsG0080048876.01.T01:intron 30.0%
!!! ATGTTTTTTTTCAGGTCCAA+AGG + contig503end:10793-10812 MsG0080048876.01.T01:intron 30.0%
!!! TGTGTGATGTGTTTTAGTTA+GGG + contig503end:11237-11256 MsG0080048876.01.T01:intron 30.0%
!!! TGTTTTGAGTTTTCATGTTC+TGG + contig503end:10680-10699 MsG0080048876.01.T01:intron 30.0%
!!! TTCTGGGAATGTTTTTTTTC+AGG + contig503end:10785-10804 MsG0080048876.01.T01:intron 30.0%
AAAAATTGGGTCAAAGGCTT+CGG + contig503end:14814-14833 MsG0080048876.01.T01:CDS 35.0%
AAACTGATATTGTCACCACT+TGG + contig503end:13359-13378 MsG0080048876.01.T01:intron 35.0%
AACTGATATTGTCACCACTT+GGG + contig503end:13360-13379 MsG0080048876.01.T01:intron 35.0%
AAGGAACTCCTTATACATTC+CGG + contig503end:12257-12276 MsG0080048876.01.T01:CDS 35.0%
AAGGGTGAAGAACTCATTAT+CGG - contig503end:13653-13672 MsG0080048876.01.T01:intergenic 35.0%
AAGTGGGATACAAATGCAAA+TGG - contig503end:11274-11293 MsG0080048876.01.T01:intergenic 35.0%
AATTTACCTCCAGTATACAC+AGG + contig503end:12187-12206 MsG0080048876.01.T01:CDS 35.0%
ACAGGAACTAGAGAAAATGA+AGG + contig503end:12147-12166 MsG0080048876.01.T01:intron 35.0%
ACGATGTAATCAGGAAATGA+TGG - contig503end:13123-13142 MsG0080048876.01.T01:intergenic 35.0%
AGAAATGGAAATGGAAGAGA+TGG - contig503end:10135-10154 MsG0080048876.01.T01:intergenic 35.0%
AGAAGGCCAATGATACAATT+AGG - contig503end:14554-14573 MsG0080048876.01.T01:intergenic 35.0%
AGCATTTACCAAACACTCTA+AGG + contig503end:12874-12893 MsG0080048876.01.T01:CDS 35.0%
AGGAACTGAATACAGATACA+GGG + contig503end:13285-13304 MsG0080048876.01.T01:intron 35.0%
AGTTGGAATTTGGATACACT+TGG + contig503end:12663-12682 MsG0080048876.01.T01:CDS 35.0%
ATTAGCAGCAAAACTTTGCA+AGG - contig503end:14061-14080 MsG0080048876.01.T01:intergenic 35.0%
ATTGAACGTGTGAACAAAAG+TGG + contig503end:13796-13815 MsG0080048876.01.T01:CDS 35.0%
ATTGTCACAAAGCTAACTTC+AGG - contig503end:15253-15272 MsG0080048876.01.T01:intergenic 35.0%
CAAAACTAGTCGACTGAAAT+TGG - contig503end:13459-13478 MsG0080048876.01.T01:intergenic 35.0%
CTCAAAAAATGTACAGGACA+AGG - contig503end:11517-11536 MsG0080048876.01.T01:intergenic 35.0%
CTCAGGAAGATTATCTTGTA+TGG - contig503end:14719-14738 MsG0080048876.01.T01:intergenic 35.0%
GAACATGATTGTGATATGCA+AGG + contig503end:14580-14599 MsG0080048876.01.T01:intron 35.0%
GAGACAAGGAAATATGATGA+TGG + contig503end:10068-10087 MsG0080048876.01.T01:exon 35.0%
GAGCTTATGTGACATTCTTT+CGG + contig503end:11727-11746 MsG0080048876.01.T01:intron 35.0%
GCACTCGGTTTAAAAATAAG+TGG - contig503end:11291-11310 MsG0080048876.01.T01:intergenic 35.0%
GGAAAGTCTCAAACATGATT+CGG + contig503end:14868-14887 MsG0080048876.01.T01:intron 35.0%
GGAATAAGTATGAGATTGTG+CGG + contig503end:12018-12037 MsG0080048876.01.T01:intron 35.0%
GGTCCTTATTCTGCTTTAAT+AGG + contig503end:13265-13284 MsG0080048876.01.T01:intron 35.0%
TAATTGAGAATTCACCTCCA+AGG + contig503end:15358-15377 MsG0080048876.01.T01:exon 35.0%
TAGGAACTGAATACAGATAC+AGG + contig503end:13284-13303 MsG0080048876.01.T01:intron 35.0%
TATTTCCTTGTCTCAGCTTT+CGG - contig503end:10062-10081 MsG0080048876.01.T01:intergenic 35.0%
TCCAGTATACACAGGTAAAT+GGG + contig503end:12195-12214 MsG0080048876.01.T01:CDS 35.0%
TTAGTGTCTTGAAGGTTAGT+TGG + contig503end:12646-12665 MsG0080048876.01.T01:intron 35.0%
TTAGTGTGTGCTAACATAGT+TGG + contig503end:14971-14990 MsG0080048876.01.T01:intron 35.0%
TTCCTCTCAGATTGTCTATA+TGG - contig503end:11063-11082 MsG0080048876.01.T01:intergenic 35.0%
TTCTTCACCCTTGATAAACT+TGG + contig503end:13661-13680 MsG0080048876.01.T01:CDS 35.0%
TTGAGTTCCCCAAAATTAGA+GGG + contig503end:11532-11551 MsG0080048876.01.T01:intron 35.0%
TTGTCTTGCTTTATCAAGCT+GGG + contig503end:15209-15228 MsG0080048876.01.T01:exon 35.0%
TTTCTCATGTCATCAGGTAA+TGG + contig503end:12763-12782 MsG0080048876.01.T01:intron 35.0%
! AATGTACAGGACAAGGATTT+TGG - contig503end:11510-11529 MsG0080048876.01.T01:intergenic 35.0%
! ATTCTGGGTTTGAATGGTTT+TGG + contig503end:10650-10669 MsG0080048876.01.T01:intron 35.0%
! CACACCTTATTTGAGTGATT+TGG + contig503end:11390-11409 MsG0080048876.01.T01:intron 35.0%
! CTCAAACATGATTCGGATTT+AGG + contig503end:14875-14894 MsG0080048876.01.T01:intron 35.0%
! CTTGAAGGTTAGTTGGAATT+TGG + contig503end:12653-12672 MsG0080048876.01.T01:intron 35.0%
! GGTTTTGCACTTCTATTTAG+AGG + contig503end:15399-15418 MsG0080048876.01.T01:exon 35.0%
! GTGTTGTTACATCTTGTAAC+AGG + contig503end:14390-14409 MsG0080048876.01.T01:intron 35.0%
! TTCTGGGTTTGAATGGTTTT+GGG + contig503end:10651-10670 MsG0080048876.01.T01:intron 35.0%
! TTTGAGTTCCCCAAAATTAG+AGG + contig503end:11531-11550 MsG0080048876.01.T01:intron 35.0%
!! TTGAGTGATTTGGTAGAGAA+TGG + contig503end:11400-11419 MsG0080048876.01.T01:intron 35.0%
!!! AATATATGGAGGGTTTTAGG+AGG - contig503end:11594-11613 MsG0080048876.01.T01:intergenic 35.0%
!!! ATATATGGAGGGTTTTAGGA+GGG - contig503end:11593-11612 MsG0080048876.01.T01:intergenic 35.0%
!!! GAGTTTTCATGTTCTGGTTT+TGG + contig503end:10686-10705 MsG0080048876.01.T01:intron 35.0%
!!! GTTTTAGTTAGGGAAGCTTA+AGG + contig503end:11247-11266 MsG0080048876.01.T01:intron 35.0%
!!! TTTGTTTTGGTTGATGATGG+TGG + contig503end:11001-11020 MsG0080048876.01.T01:intron 35.0%
!!! TTTTGGTTTGCTGTGATTGT+CGG + contig503end:14945-14964 MsG0080048876.01.T01:intron 35.0%
!!! TTTTTTTCAGGTCCAAAGGT+GGG + contig503end:10797-10816 MsG0080048876.01.T01:intron 35.0%
!!! TTTTTTTTCAGGTCCAAAGG+TGG + contig503end:10796-10815 MsG0080048876.01.T01:intron 35.0%
AAAACCATGAGGAAGAACAC+AGG - contig503end:13924-13943 MsG0080048876.01.T01:intergenic 40.0%
AAACTCCATGGACCAGATAT+TGG + contig503end:15178-15197 MsG0080048876.01.T01:exon 40.0%
AAATCCTGTGTTCTTCCTCA+TGG + contig503end:13917-13936 MsG0080048876.01.T01:intron 40.0%
AACTCCATGGACCAGATATT+GGG + contig503end:15179-15198 MsG0080048876.01.T01:exon 40.0%
AACTCCCAAACAAAGCCTTA+AGG - contig503end:11332-11351 MsG0080048876.01.T01:intergenic 40.0%
AAGCTATGCTAGAGAGCTTA+TGG - contig503end:11806-11825 MsG0080048876.01.T01:intergenic 40.0%
AAGGAAACGTGTGCAAAATG+AGG - contig503end:13028-13047 MsG0080048876.01.T01:intergenic 40.0%
ACACGAAACCGGAATGTATA+AGG - contig503end:12268-12287 MsG0080048876.01.T01:intergenic 40.0%
ACTACCTAGCATTATTAGGC+TGG + contig503end:13617-13636 MsG0080048876.01.T01:CDS 40.0%
AGGTAGTTATTCATTGCCTC+AGG - contig503end:13604-13623 MsG0080048876.01.T01:intergenic 40.0%
AGGTCTATCTGATAACACGA+TGG + contig503end:15378-15397 MsG0080048876.01.T01:exon 40.0%
AGTCAATCCCATCCTTAAGT+AGG - contig503end:14426-14445 MsG0080048876.01.T01:intergenic 40.0%
AGTTATTCATTGCCTCAGGT+AGG - contig503end:13600-13619 MsG0080048876.01.T01:intergenic 40.0%
ATTTGACCTATGGCCTGTTT+GGG + contig503end:11693-11712 MsG0080048876.01.T01:intron 40.0%
CAAGACAAATTTCCCACCTT+TGG - contig503end:10812-10831 MsG0080048876.01.T01:intergenic 40.0%
CATTTACCTGTGTATACTGG+AGG - contig503end:12196-12215 MsG0080048876.01.T01:intergenic 40.0%
CTACCTAGCATTATTAGGCT+GGG + contig503end:13618-13637 MsG0080048876.01.T01:CDS 40.0%
CTCCAGTATACACAGGTAAA+TGG + contig503end:12194-12213 MsG0080048876.01.T01:CDS 40.0%
CTCCTTCACAACATGATCTT+TGG - contig503end:15323-15342 MsG0080048876.01.T01:intergenic 40.0%
CTGTGGATGAATCTGTTTAC+AGG + contig503end:12985-13004 MsG0080048876.01.T01:intron 40.0%
GAAGAACAAAGCAGTAGCTA+AGG - contig503end:11938-11957 MsG0080048876.01.T01:intergenic 40.0%
GAGGAGATGACCAAACTTAT+CGG + contig503end:14182-14201 MsG0080048876.01.T01:CDS 40.0%
GATGACATGAGAAATAGCCA+TGG - contig503end:12757-12776 MsG0080048876.01.T01:intergenic 40.0%
GCTGAGAAACTACTTCAATC+CGG + contig503end:11102-11121 MsG0080048876.01.T01:CDS 40.0%
GCTTCCTCACAATATCAGAA+GGG + contig503end:14225-14244 MsG0080048876.01.T01:CDS 40.0%
GGGGAACTCAAAAAATGTAC+AGG - contig503end:11523-11542 MsG0080048876.01.T01:intergenic 40.0%
GTCCAAAGATCATGTTGTGA+AGG + contig503end:15318-15337 MsG0080048876.01.T01:exon 40.0%
GTCCATATAGACAATCTGAG+AGG + contig503end:11058-11077 MsG0080048876.01.T01:CDS 40.0%
GTGATCTGTGATGATAGGAT+CGG + contig503end:11633-11652 MsG0080048876.01.T01:intron 40.0%
GTTGTCTTGCTTTATCAAGC+TGG + contig503end:15208-15227 MsG0080048876.01.T01:exon 40.0%
TACCTAGCATTATTAGGCTG+GGG + contig503end:13619-13638 MsG0080048876.01.T01:CDS 40.0%
TAGTCGACTGAAATTGGTAC+CGG - contig503end:13453-13472 MsG0080048876.01.T01:intergenic 40.0%
TATAAACGAACAAGGGTGAC+CGG - contig503end:14901-14920 MsG0080048876.01.T01:intergenic 40.0%
TATGCAAGGCTGTATGAGTT+TGG + contig503end:14594-14613 MsG0080048876.01.T01:intron 40.0%
TATTTGACCTATGGCCTGTT+TGG + contig503end:11692-11711 MsG0080048876.01.T01:intron 40.0%
TCGTGTTATCAGATAGACCT+TGG - contig503end:15378-15397 MsG0080048876.01.T01:intergenic 40.0%
TGTTATCAGATAGACCTTGG+AGG - contig503end:15375-15394 MsG0080048876.01.T01:intergenic 40.0%
TTCTTGGCTGCATATGATAG+CGG + contig503end:14751-14770 MsG0080048876.01.T01:CDS 40.0%
TTGTACCTTCATCCCATTCA+AGG - contig503end:10912-10931 MsG0080048876.01.T01:intergenic 40.0%
! AACATGATTCGGATTTAGGC+CGG + contig503end:14879-14898 MsG0080048876.01.T01:intron 40.0%
! AATCACTCTTCATGCCACTT+CGG + contig503end:15140-15159 MsG0080048876.01.T01:exon 40.0%
! CTTTGTTTGGGAGTTTGAAG+GGG + contig503end:11337-11356 MsG0080048876.01.T01:intron 40.0%
! GAGAATTGAGGACACTGATT+TGG + contig503end:10831-10850 MsG0080048876.01.T01:CDS 40.0%
! TACAGGACAAGGATTTTGGA+GGG - contig503end:11506-11525 MsG0080048876.01.T01:intergenic 40.0%
! TGATTTGGAGAGGTCTACTA+GGG + contig503end:10846-10865 MsG0080048876.01.T01:CDS 40.0%
! TTATCCAAACAGGGCATTAC+TGG + contig503end:11903-11922 MsG0080048876.01.T01:intron 40.0%
! TTTTCCAGTAATGCCCTGTT+TGG - contig503end:11910-11929 MsG0080048876.01.T01:intergenic 40.0%
!! GCTTTGTTTGGGAGTTTGAA+GGG + contig503end:11336-11355 MsG0080048876.01.T01:intron 40.0%
!! TATGATAGCGGTGATCTTGT+AGG + contig503end:14763-14782 MsG0080048876.01.T01:CDS 40.0%
!! TGGCTATTTCTCATGTCATC+AGG + contig503end:12757-12776 MsG0080048876.01.T01:CDS 40.0%
!! TTTACCAAACACTCTAAGGC+AGG + contig503end:12878-12897 MsG0080048876.01.T01:CDS 40.0%
!! TTTGGTTTGTTCTGCATCTG+TGG + contig503end:12968-12987 MsG0080048876.01.T01:intron 40.0%
!!! AGCATCTTGGTCACTGATTT+TGG + contig503end:12950-12969 MsG0080048876.01.T01:intron 40.0%
!!! CCTTGATTTTAGCTCCTGAT+CGG + contig503end:13044-13063 MsG0080048876.01.T01:CDS 40.0%
AACGTGTGCAAAATGAGGCA+TGG - contig503end:13023-13042 MsG0080048876.01.T01:intergenic 45.0%
AAGAAGCTGGCACAAAACTC+AGG - contig503end:14736-14755 MsG0080048876.01.T01:intergenic 45.0%
AATGACATGCACAGGCAATC+AGG - contig503end:15019-15038 MsG0080048876.01.T01:intergenic 45.0%
ACCATAATCTCCACCAACAC+CGG - contig503end:11040-11059 MsG0080048876.01.T01:intergenic 45.0%
ACGTGTGCAAAATGAGGCAT+GGG - contig503end:13022-13041 MsG0080048876.01.T01:intergenic 45.0%
ACTCCATGGACCAGATATTG+GGG + contig503end:15180-15199 MsG0080048876.01.T01:exon 45.0%
ACTGGTAACCTTCATGTTGG+TGG + contig503end:10273-10292 MsG0080048876.01.T01:CDS 45.0%
AGTCGACTGAAATTGGTACC+GGG - contig503end:13452-13471 MsG0080048876.01.T01:intergenic 45.0%
AGTTTGGTCATCTCCTCTGA+TGG - contig503end:14179-14198 MsG0080048876.01.T01:intergenic 45.0%
ATAGTTGAAGAGGGCAGTTC+TGG - contig503end:10301-10320 MsG0080048876.01.T01:intergenic 45.0%
ATCATATGCAGCCAAGAAGC+TGG - contig503end:14749-14768 MsG0080048876.01.T01:intergenic 45.0%
ATCTGCTGTCTTGCAGTACA+GGG + contig503end:13564-13583 MsG0080048876.01.T01:intron 45.0%
ATGATGGCTGCGTTGAGTAA+CGG + contig503end:10084-10103 MsG0080048876.01.T01:CDS 45.0%
CAGTGCTTAGAGATCTTACC+TGG + contig503end:10881-10900 MsG0080048876.01.T01:CDS 45.0%
CCAACATGAAGGTTACCAGT+AGG - contig503end:10273-10292 MsG0080048876.01.T01:intergenic 45.0%
CCAAGCTGGCTGGAAAAATT+GGG + contig503end:14801-14820 MsG0080048876.01.T01:CDS 45.0%
CCACTGTTTCAAAGGGATCA+TGG - contig503end:12523-12542 MsG0080048876.01.T01:intergenic 45.0%
CCGATCAGGAGCTAAAATCA+AGG - contig503end:13047-13066 MsG0080048876.01.T01:intergenic 45.0%
CCTACTGGTAACCTTCATGT+TGG + contig503end:10270-10289 MsG0080048876.01.T01:CDS 45.0%
CTGCAAGACAGCAGATATTG+AGG - contig503end:13560-13579 MsG0080048876.01.T01:intergenic 45.0%
CTTAGAGATCTTACCTGGCT+TGG + contig503end:10886-10905 MsG0080048876.01.T01:CDS 45.0%
CTTTATCAAGCTGGGACTAC+TGG + contig503end:15217-15236 MsG0080048876.01.T01:exon 45.0%
GAAGCAGCGATAAACTTGAC+CGG - contig503end:11124-11143 MsG0080048876.01.T01:intergenic 45.0%
GACAGAGAATTTGCGTCGAA+AGG - contig503end:10196-10215 MsG0080048876.01.T01:intergenic 45.0%
GATATTGTCACCACTTGGGT+TGG + contig503end:13364-13383 MsG0080048876.01.T01:intron 45.0%
GCCAGCAACAAGTAGAAAGT+TGG - contig503end:14677-14696 MsG0080048876.01.T01:intergenic 45.0%
GCCCATTTACCTGTGTATAC+TGG - contig503end:12199-12218 MsG0080048876.01.T01:intergenic 45.0%
GGCTGGAAAAATTGGGTCAA+AGG + contig503end:14808-14827 MsG0080048876.01.T01:CDS 45.0%
GGCTTCCTCACAATATCAGA+AGG + contig503end:14224-14243 MsG0080048876.01.T01:CDS 45.0%
GTAGAAGAAGAGCTGGCAAA+AGG + contig503end:12238-12257 MsG0080048876.01.T01:CDS 45.0%
GTAGCGTGATCTGTGATGAT+AGG + contig503end:11628-11647 MsG0080048876.01.T01:intron 45.0%
GTCTTGCAGTACAGGGAAAT+GGG + contig503end:13571-13590 MsG0080048876.01.T01:intron 45.0%
TACTTCCGCATCTGTTGCAT+TGG - contig503end:12221-12240 MsG0080048876.01.T01:intergenic 45.0%
TATCTGCTGTCTTGCAGTAC+AGG + contig503end:13563-13582 MsG0080048876.01.T01:intron 45.0%
TCAAATAAGGCAGCCCAAAC+AGG - contig503end:11709-11728 MsG0080048876.01.T01:intergenic 45.0%
TCGCTGCTTCTGTTCTAATG+AGG + contig503end:11134-11153 MsG0080048876.01.T01:CDS 45.0%
TGAAGGTTACCAGTAGGAGA+AGG - contig503end:10267-10286 MsG0080048876.01.T01:intergenic 45.0%
TGTCTTGCAGTACAGGGAAA+TGG + contig503end:13570-13589 MsG0080048876.01.T01:intron 45.0%
! AATGCCTGCCTTAGAGTGTT+TGG - contig503end:12885-12904 MsG0080048876.01.T01:intergenic 45.0%
! ATCTGGTCCATGGAGTTTTC+CGG - contig503end:15176-15195 MsG0080048876.01.T01:intergenic 45.0%
! GCCAACTTTCTACTTGTTGC+TGG + contig503end:14673-14692 MsG0080048876.01.T01:intron 45.0%
! GTACAGGACAAGGATTTTGG+AGG - contig503end:11507-11526 MsG0080048876.01.T01:intergenic 45.0%
! TTTAAGAGCACGTCCATCAG+AGG + contig503end:14163-14182 MsG0080048876.01.T01:CDS 45.0%
!! CCATGATCCCTTTGAAACAG+TGG + contig503end:12520-12539 MsG0080048876.01.T01:intron 45.0%
!! CTGATTTGGAGAGGTCTACT+AGG + contig503end:10845-10864 MsG0080048876.01.T01:CDS 45.0%
!! GATGATGGTGGTGATGGTTA+GGG + contig503end:11013-11032 MsG0080048876.01.T01:intron 45.0%
!! GGCTTTGTTTGGGAGTTTGA+AGG + contig503end:11335-11354 MsG0080048876.01.T01:intron 45.0%
!! TACTGACTTAATACGAGGCG+AGG + contig503end:12309-12328 MsG0080048876.01.T01:CDS 45.0%
!! TGAGTTTTGTGCCAGCTTCT+TGG + contig503end:14735-14754 MsG0080048876.01.T01:CDS 45.0%
!! TGATGATGGTGGTGATGGTT+AGG + contig503end:11012-11031 MsG0080048876.01.T01:intron 45.0%
!! TTGAGGACACTGATTTGGAG+AGG + contig503end:10836-10855 MsG0080048876.01.T01:CDS 45.0%
!! TTGGTTGATGATGGTGGTGA+TGG + contig503end:11007-11026 MsG0080048876.01.T01:intron 45.0%
!! ATACATTATTATTTATTTAT+TGG - contig503end:14092-14111 MsG0080048876.01.T01:intergenic 5.0%
AAGCGCAAGGTGAGCTGAAT+GGG + contig503end:14847-14866 MsG0080048876.01.T01:intron 50.0%
ACAACAGCTGCCCCAATATC+TGG - contig503end:15193-15212 MsG0080048876.01.T01:intergenic 50.0%
AGGAGCGAAACGAACACGAA+CGG - contig503end:10247-10266 MsG0080048876.01.T01:intergenic 50.0%
AGGGCCCTTCTGATATTGTG+AGG - contig503end:14232-14251 MsG0080048876.01.T01:intergenic 50.0%
ATCGAACCTGAGACCTTGAG+AGG - contig503end:13425-13444 MsG0080048876.01.T01:intergenic 50.0%
ATGGGCCAATGCAACAGATG+CGG + contig503end:12213-12232 MsG0080048876.01.T01:CDS 50.0%
CATTATTAGGCTGGGGCGAT+GGG + contig503end:13626-13645 MsG0080048876.01.T01:CDS 50.0%
CCAACGCTCTCCGATAAGTT+TGG - contig503end:14195-14214 MsG0080048876.01.T01:intergenic 50.0%
CCATAATCTCCACCAACACC+GGG - contig503end:11039-11058 MsG0080048876.01.T01:intergenic 50.0%
CGACATGGAGCAACATCAGT+TGG + contig503end:13082-13101 MsG0080048876.01.T01:CDS 50.0%
CGGCAAATCAACTAAGCGCA+AGG + contig503end:14834-14853 MsG0080048876.01.T01:CDS 50.0%
CTACTGACCGGAAAACTCCA+TGG + contig503end:15166-15185 MsG0080048876.01.T01:exon 50.0%
CTGTTCCGAAAGCTGAGACA+AGG + contig503end:10054-10073 MsG0080048876.01.T01:exon 50.0%
CTTGTAGGTGCACTGGAAGA+AGG + contig503end:14778-14797 MsG0080048876.01.T01:CDS 50.0%
GAGGTCTACTAGGGAATCTG+AGG + contig503end:10855-10874 MsG0080048876.01.T01:CDS 50.0%
GCCAAGCTGGCTGGAAAAAT+TGG + contig503end:14800-14819 MsG0080048876.01.T01:CDS 50.0%
GGAAATGGGATACCTACCTG+AGG + contig503end:13585-13604 MsG0080048876.01.T01:CDS 50.0%
GTCTACTAGGGAATCTGAGG+AGG + contig503end:10858-10877 MsG0080048876.01.T01:CDS 50.0%
GTCTCAGGTTCGATTCTTCC+CGG + contig503end:13431-13450 MsG0080048876.01.T01:intron 50.0%
GTTTGGGAGTTTGAAGGGGA+GGG + contig503end:11341-11360 MsG0080048876.01.T01:intron 50.0%
TAAGCGCAAGGTGAGCTGAA+TGG + contig503end:14846-14865 MsG0080048876.01.T01:intron 50.0%
TGCGGAAGTAGAAGAAGAGC+TGG + contig503end:12231-12250 MsG0080048876.01.T01:CDS 50.0%
TGGAGCAACATCAGTTGGTC+AGG + contig503end:13087-13106 MsG0080048876.01.T01:CDS 50.0%
TGTTTGGGAGTTTGAAGGGG+AGG + contig503end:11340-11359 MsG0080048876.01.T01:intron 50.0%
TTCTGGCACCACCAACATGA+AGG - contig503end:10284-10303 MsG0080048876.01.T01:intergenic 50.0%
TTTGGGAGTTTGAAGGGGAG+GGG + contig503end:11342-11361 MsG0080048876.01.T01:intron 50.0%
! CATGGAGTTTTCCGGTCAGT+AGG - contig503end:15168-15187 MsG0080048876.01.T01:intergenic 50.0%
! CCAAACTTATCGGAGAGCGT+TGG + contig503end:14192-14211 MsG0080048876.01.T01:CDS 50.0%
! CCCAATTTTTCCAGCCAGCT+TGG - contig503end:14804-14823 MsG0080048876.01.T01:intergenic 50.0%
! CGTTGAGTAACGGAAGTCCA+TGG + contig503end:10094-10113 MsG0080048876.01.T01:CDS 50.0%
! GGAGTAGCAAGCTTTGTCCA+TGG - contig503end:10114-10133 MsG0080048876.01.T01:intergenic 50.0%
! TTCCTTTGGGGACACGAAAC+CGG - contig503end:12279-12298 MsG0080048876.01.T01:intergenic 50.0%
!! CTTGGCCTTGAATGGGATGA+AGG + contig503end:10904-10923 MsG0080048876.01.T01:CDS 50.0%
!! GACGGTTGATGATGCTACCA+TGG + contig503end:12737-12756 MsG0080048876.01.T01:CDS 50.0%
!! TACCTGGCTTGGCCTTGAAT+GGG + contig503end:10897-10916 MsG0080048876.01.T01:CDS 50.0%
!! TTACCTGGCTTGGCCTTGAA+TGG + contig503end:10896-10915 MsG0080048876.01.T01:CDS 50.0%
!!! AGGGTTTTAGGAGGGCTTTG+GGG - contig503end:11585-11604 MsG0080048876.01.T01:intergenic 50.0%
!!! GAGGGTTTTAGGAGGGCTTT+GGG - contig503end:11586-11605 MsG0080048876.01.T01:intergenic 50.0%
ATCCCATTCAAGGCCAAGCC+AGG - contig503end:10902-10921 MsG0080048876.01.T01:intergenic 55.0%
CGCCCCAGCCTAATAATGCT+AGG - contig503end:13624-13643 MsG0080048876.01.T01:intergenic 55.0%
CGGTGATCTTGTAGGTGCAC+TGG + contig503end:14771-14790 MsG0080048876.01.T01:CDS 55.0%
CGTTTCGCTCCTTCTCCTAC+TGG + contig503end:10255-10274 MsG0080048876.01.T01:CDS 55.0%
CTGCCCCAATATCTGGTCCA+TGG - contig503end:15186-15205 MsG0080048876.01.T01:intergenic 55.0%
GCATTATTAGGCTGGGGCGA+TGG + contig503end:13625-13644 MsG0080048876.01.T01:CDS 55.0%
GGAGCGAAACGAACACGAAC+GGG - contig503end:10246-10265 MsG0080048876.01.T01:intergenic 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG + contig503end:13416-13435 MsG0080048876.01.T01:intron 55.0%
TTCCGGTTTCGTGTCCCCAA+AGG + contig503end:12274-12293 MsG0080048876.01.T01:CDS 55.0%
!! CCCGGTGTTGGTGGAGATTA+TGG + contig503end:11036-11055 MsG0080048876.01.T01:CDS 55.0%
!! GGAGAGCGTTGGAAGACATC+TGG + contig503end:14203-14222 MsG0080048876.01.T01:CDS 55.0%
!! TGGTGTTGGCTTGGGACCTT+GGG + contig503end:13392-13411 MsG0080048876.01.T01:intron 55.0%
!!! GGAGGGTTTTAGGAGGGCTT+TGG - contig503end:11587-11606 MsG0080048876.01.T01:intergenic 55.0%
AGGCAGCCCAAACAGGCCAT+AGG - contig503end:11702-11721 MsG0080048876.01.T01:intergenic 60.0%
CCACTTCGGCTCCTACTGAC+CGG + contig503end:15154-15173 MsG0080048876.01.T01:exon 60.0%
CTTGGGGTGTGCTCCTCTCA+AGG + contig503end:13409-13428 MsG0080048876.01.T01:intron 60.0%
GCACTGGAAGAAGGCCAAGC+TGG + contig503end:14787-14806 MsG0080048876.01.T01:CDS 60.0%
TGATGGTTAGGGCCCGGTGT+TGG + contig503end:11024-11043 MsG0080048876.01.T01:intron 60.0%
TGGAAGAAGGCCAAGCTGGC+TGG + contig503end:14791-14810 MsG0080048876.01.T01:CDS 60.0%
! CTTGAGAGGAGCACACCCCA+AGG - contig503end:13411-13430 MsG0080048876.01.T01:intergenic 60.0%
!! GGTGTTGGCTTGGGACCTTG+GGG + contig503end:13393-13412 MsG0080048876.01.T01:intron 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG + contig503end:13391-13410 MsG0080048876.01.T01:intron 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG + contig503end:13384-13403 MsG0080048876.01.T01:intron 60.0%
!! TGGTGGTGATGGTTAGGGCC+CGG + contig503end:11018-11037 MsG0080048876.01.T01:intron 60.0%
!! TGTCACCACTTGGGTTGGCC+TGG + contig503end:13369-13388 MsG0080048876.01.T01:intron 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG + contig503end:13383-13402 MsG0080048876.01.T01:intron 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG + contig503end:13378-13397 MsG0080048876.01.T01:intron 60.0%
CACCACCAGGCCAACCCAAG+TGG - contig503end:13377-13396 MsG0080048876.01.T01:intergenic 65.0%
CCGGTCAGTAGGAGCCGAAG+TGG - contig503end:15157-15176 MsG0080048876.01.T01:intergenic 65.0%
GGGAGTTTGAAGGGGAGGGG+AGG + contig503end:11345-11364 MsG0080048876.01.T01:intron 65.0%
GGTCCCAAGCCAACACCACC+AGG - contig503end:13390-13409 MsG0080048876.01.T01:intergenic 65.0%
! TGGTTAGGGCCCGGTGTTGG+TGG + contig503end:11027-11046 MsG0080048876.01.T01:intron 65.0%
!! CACCACTTGGGTTGGCCTGG+TGG + contig503end:13372-13391 MsG0080048876.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
contig503end gene 10036 15518 10036 ID=MsG0080048876.01;
contig503end mRNA 10036 15518 10036 ID=MsG0080048876.01.T01;Parent=MsG0080048876.01
contig503end exon 10036 10331 10036 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 10081 10331 10081 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end CDS 10807 10925 10807 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 10807 10925 10807 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 11034 11155 11034 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 11034 11155 11034 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 12151 12330 12151 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 12151 12330 12151 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 12660 12778 12660 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 12660 12778 12660 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 12866 12914 12866 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 12866 12914 12866 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 13007 13108 13007 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 13007 13108 13007 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 13580 13682 13580 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 13580 13682 13580 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 13782 13845 13782 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 13782 13845 13782 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 14145 14259 14145 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 14145 14259 14145 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 14412 14512 14412 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 14412 14512 14412 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 14699 14855 14699 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 14699 14855 14699 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
contig503end CDS 15136 15360 15136 ID=MsG0080048876.01.T01.cds;Parent=MsG0080048876.01.T01
contig503end exon 15136 15518 15136 ID=MsG0080048876.01.T01.exon;Parent=MsG0080048876.01.T01
Gene Sequence

>MsG0080048876.01.T01

ATGATGATGGCTGCGTTGAGTAACGGAAGTCCATGGACAAAGCTTGCTACTCCATCTCTTCCATTTCCATTTCTTCATCAATCTTACTCTTCTTACACTTCTCGAATCTTCTCCTTTCGACGCAAATTCTCTGTCAATGCTCTTTCACAACAACAATCTCTTCCCGTTCGTGTTCGTTTCGCTCCTTCTCCTACTGGTAACCTTCATGTTGGTGGTGCCAGAACTGCCCTCTTCAACTATTTGTTTGCTAGGTCCAAAGGTGGGAAATTTGTCTTGAGAATTGAGGACACTGATTTGGAGAGGTCTACTAGGGAATCTGAGGAGGCAGTGCTTAGAGATCTTACCTGGCTTGGCCTTGAATGGGATGAAGGGCCCGGTGTTGGTGGAGATTATGGTCCATATAGACAATCTGAGAGGAATTCTATGTACAAACAATATGCTGAGAAACTACTTCAATCCGGTCAAGTTTATCGCTGCTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGTGAATGCTAAACTAAAAAATTTACCTCCAGTATACACAGGTAAATGGGCCAATGCAACAGATGCGGAAGTAGAAGAAGAGCTGGCAAAAGGAACTCCTTATACATTCCGGTTTCGTGTCCCCAAAGGAAGTTTAAAAATTACTGACTTAATACGAGGCGAGGTTAGTTGGAATTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAACGGTCAGCCAGTTTATAACTTTTGTGTGACGGTTGATGATGCTACCATGGCTATTTCTCATGTCATCAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTAATATATAAGGCACTAGAATTTCCCATGCCTCATTTTGCACACGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCAAAGCGACATGGAGCAACATCAGTTGGTCAGTACAGGGAAATGGGATACCTACCTGAGGCAATGAATAACTACCTAGCATTATTAGGCTGGGGCGATGGGACCGATAATGAGTTCTTCACCCTTGATAAACTTGTTGAAAGATTCACTATTGAACGTGTGAACAAAAGTGGTGCTGTTTTTGATTCCACAAAGTTAAGGTGGATGAATGGTCAACATTTAAGAGCACGTCCATCAGAGGAGATGACCAAACTTATCGGAGAGCGTTGGAAGACATCTGGCTTCCTCACAATATCAGAAGGGCCCTTTGTTGATGAATTAATAAACCTACTTAAGGATGGGATTGACTTGATAACTGATGCAGACAAAGTACTTTCTAACTTGCTTTCTTATCCTCTACATTCTACTTTACAAAGCGAAGAAGCAGAATCTGCCATACAAGATAATCTTCCTGAGTTTTGTGCCAGCTTCTTGGCTGCATATGATAGCGGTGATCTTGTAGGTGCACTGGAAGAAGGCCAAGCTGGCTGGAAAAATTGGGTCAAAGGCTTCGGCAAATCAACTAAGCGCAAGGGAAAATCACTCTTCATGCCACTTCGGCTCCTACTGACCGGAAAACTCCATGGACCAGATATTGGGGCAGCTGTTGTCTTGCTTTATCAAGCTGGGACTACTGGTGTCATAGCTCCTGAAGTTAGCTTTGTGACAATTGATGAAAGAGTTAAAATGCTTAGAGAAATTAATTGGGAAACACTGTCCAAAGATCATGTTGTGAAGGAGACTGCTTCTACTGTCTAA

Protein sequence

>MsG0080048876.01.T01

MMMAALSNGSPWTKLATPSLPFPFLHQSYSSYTSRIFSFRRKFSVNALSQQQSLPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAVLRDLTWLGLEWDEGPGVGGDYGPYRQSERNSMYKQYAEKLLQSGQVYRCFCSNEELEKMKVNAKLKNLPPVYTGKWANATDAEVEEELAKGTPYTFRFRVPKGSLKITDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPHFAHVSLILAPDRSKLSKRHGATSVGQYREMGYLPEAMNNYLALLGWGDGTDNEFFTLDKLVERFTIERVNKSGAVFDSTKLRWMNGQHLRARPSEEMTKLIGERWKTSGFLTISEGPFVDELINLLKDGIDLITDADKVLSNLLSYPLHSTLQSEEAESAIQDNLPEFCASFLAAYDSGDLVGALEEGQAGWKNWVKGFGKSTKRKGKSLFMPLRLLLTGKLHGPDIGAAVVLLYQAGTTGVIAPEVSFVTIDERVKMLREINWETLSKDHVVKETASTV*