AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031622.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031622.01.T01 MTR_6g027590 68.019 419 26 5 1 376 1 354 0.0 534
MsG0680031622.01.T01 MTR_6g471010 66.110 419 34 5 1 376 1 354 0.0 524
MsG0680031622.01.T01 MTR_5g020810 31.566 396 182 12 2 368 413 748 4.41e-44 162
MsG0680031622.01.T01 MTR_3g118160 24.524 420 217 12 2 369 421 792 4.61e-21 95.5
MsG0680031622.01.T01 MTR_3g088120 45.763 59 32 0 2 60 33 91 3.72e-14 72.8
MsG0680031622.01.T01 MTR_3g088120 45.763 59 32 0 2 60 33 91 6.18e-14 72.8
MsG0680031622.01.T01 MTR_3g088380 44.068 59 33 0 3 61 11 69 9.73e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031622.01.T01 AT5G27740 58.962 424 56 6 1 376 1 354 4.93e-168 473
MsG0680031622.01.T01 AT1G77470 45.763 59 32 0 3 61 41 99 3.50e-14 73.6
MsG0680031622.01.T01 AT1G21690 45.763 59 32 0 3 61 11 69 1.41e-12 68.6
MsG0680031622.01.T01 AT1G21690 45.763 59 32 0 3 61 11 69 1.79e-12 68.2
MsG0680031622.01.T01 AT1G21690 44.828 58 32 0 3 60 11 68 1.37e-11 65.5

Find 94 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAGCGATGCAGGCTTTC+AGG 0.177682 6:+23424255 MsG0680031622.01.T01:CDS
TAGAACATTGTCTAGGGTTT+TGG 0.211566 6:-23422377 None:intergenic
TTCTATGGTCCTTCAGGTTC+TGG 0.234163 6:+23422553 MsG0680031622.01.T01:CDS
GACTCAAGATTATGATGTTT+TGG 0.264493 6:+23427852 MsG0680031622.01.T01:three_prime_UTR
TCTCCCATGTCATATGCTTT+AGG 0.268223 6:+23426314 MsG0680031622.01.T01:CDS
TTGTTGTTCTATGGTCCTTC+AGG 0.271773 6:+23422547 MsG0680031622.01.T01:CDS
TCCTTCCTCATTGCAACATT+TGG 0.283181 6:+23427713 MsG0680031622.01.T01:CDS
TGTCCCCATTTGTTGTTCTA+TGG 0.292181 6:+23422538 MsG0680031622.01.T01:CDS
GCAAGTCTCAAATGATAATA+TGG 0.323719 6:-23425900 None:intergenic
AAAGGGAAGAAAGGATTTAA+AGG 0.340018 6:+23424337 MsG0680031622.01.T01:CDS
AGCTTTGGAACATGTGAATT+AGG 0.340672 6:-23427195 None:intergenic
GAAGGGATACAACTTCCTTC+TGG 0.347481 6:+23425830 MsG0680031622.01.T01:CDS
CTCTACATTGACAGCATTTG+TGG 0.349408 6:+23427667 MsG0680031622.01.T01:intron
CTTCTCAAAGGACGCAGCTT+TGG 0.349915 6:-23427210 None:intergenic
TGGAGTCATTTCAATATGAT+TGG 0.356473 6:-23424236 None:intergenic
GCACTTCTCCGTCAAATGTT+TGG 0.356484 6:+23422595 MsG0680031622.01.T01:CDS
TTTCACTCATTCTCTAGTTA+AGG 0.357425 6:+23427795 MsG0680031622.01.T01:three_prime_UTR
GACGGAGAAGTGCCATGATT+AGG 0.363587 6:-23422585 None:intergenic
ACGGAGAAGTGCCATGATTA+GGG 0.364011 6:-23422584 None:intergenic
CATCAGTCTAGACGCGTGTT+TGG 0.389722 6:+23427159 MsG0680031622.01.T01:CDS
TATCAGCGTCAGCATATAAA+AGG 0.392841 6:+23422280 MsG0680031622.01.T01:five_prime_UTR
TTCAGGTGAAGGTGGAAAAT+AGG 0.393658 6:+23423842 MsG0680031622.01.T01:intron
TCCTGAAAGCCTGCATCGCT+TGG 0.402265 6:-23424256 None:intergenic
TTTACCTTCAAAATGATCTC+TGG 0.416432 6:-23426388 None:intergenic
TGAAGGAACAGAGCCCAAAA+AGG 0.416911 6:+23426143 MsG0680031622.01.T01:CDS
ATCAGTCTAGACGCGTGTTT+GGG 0.417337 6:+23427160 MsG0680031622.01.T01:CDS
TTCTTCCCTTTAGCATCAAT+AGG 0.419177 6:-23424325 None:intergenic
TCAAGAAATAATCAAAGAAA+TGG 0.433507 6:+23424291 MsG0680031622.01.T01:CDS
CAGTTCATTGGTAAGAAAGA+AGG 0.437200 6:+23425812 MsG0680031622.01.T01:CDS
AATAGACCTATTGATGCTAA+AGG 0.441862 6:+23424319 MsG0680031622.01.T01:CDS
AACAATTCCTCCAATGGATT+GGG 0.448998 6:+23426087 MsG0680031622.01.T01:CDS
AAGGACCATAGAACAACAAA+TGG 0.452656 6:-23422543 None:intergenic
AAACAATTCCTCCAATGGAT+TGG 0.461362 6:+23426086 MsG0680031622.01.T01:CDS
GGCTGCTTTATGAGCTATTG+AGG 0.464840 6:+23426489 MsG0680031622.01.T01:CDS
AGGTGGAAGCACTAAGATAT+TGG 0.466917 6:-23424387 None:intergenic
AGAAATCAAATCGGAATTTG+AGG 0.467465 6:+23425873 MsG0680031622.01.T01:CDS
ATAGACCTATTGATGCTAAA+GGG 0.470305 6:+23424320 MsG0680031622.01.T01:CDS
CACCAGGTCCAAACATTTGA+CGG 0.485924 6:-23422603 None:intergenic
CTCCGTCAAATGTTTGGACC+TGG 0.486693 6:+23422601 MsG0680031622.01.T01:CDS
GTTTGGACCTGGTGCTGAAA+AGG 0.486709 6:+23422612 MsG0680031622.01.T01:CDS
TTTAGGTTGTTTCAAGTTCG+TGG 0.487361 6:+23426331 MsG0680031622.01.T01:CDS
GGAAAATAGGACATGGAAAG+TGG 0.488544 6:+23423855 MsG0680031622.01.T01:CDS
TTTGTAGATGCTCATAAACT+TGG 0.494408 6:-23427690 None:intergenic
CAGTGTCAAAATTGTGGTGG+CGG 0.495803 6:-23422314 None:intergenic
ATTGTTTGCTTGTCAGTGAA+AGG 0.505282 6:-23426070 None:intergenic
TGTGAACTAGAACATTGTCT+AGG 0.507821 6:-23422384 None:intergenic
GTTGGTGTTTCAGGTGAAGG+TGG 0.511764 6:+23423834 MsG0680031622.01.T01:intron
CTCGAGAATGTGTTTATAAG+TGG 0.511887 6:+23423643 MsG0680031622.01.T01:CDS
ATTGATGCTAAAGGGAAGAA+AGG 0.515065 6:+23424328 MsG0680031622.01.T01:CDS
TGAAGCATGAAGTCTGCCAT+TGG 0.518329 6:+23426528 MsG0680031622.01.T01:CDS
GAAGCATGAAGTCTGCCATT+GGG 0.521856 6:+23426529 MsG0680031622.01.T01:CDS
TCATTGCAACATTTGGCTGA+AGG 0.524105 6:+23427720 MsG0680031622.01.T01:CDS
GTGAACTAGAACATTGTCTA+GGG 0.525927 6:-23422383 None:intergenic
AGTTCATTGGTAAGAAAGAA+GGG 0.531136 6:+23425813 MsG0680031622.01.T01:CDS
CCTCATTGAACCAGGAACAT+AGG 0.533780 6:+23426818 MsG0680031622.01.T01:intron
GAGCCACATTTGATGAGATA+AGG 0.537535 6:+23423620 MsG0680031622.01.T01:CDS
ATATATTCCTCCCAATCCAT+TGG 0.538798 6:-23426097 None:intergenic
TAGAGAATGAGTGAAATATC+CGG 0.540184 6:-23427788 None:intergenic
AACAAAATCTCACTTCTCAA+AGG 0.540565 6:-23427222 None:intergenic
AGAGAGAAGAACGATGTTGT+GGG 0.541119 6:+23422339 MsG0680031622.01.T01:exon
AGTGTCAAAATTGTGGTGGC+GGG 0.543587 6:-23422313 None:intergenic
CTCTCACAGTGTCAAAATTG+TGG 0.544317 6:-23422320 None:intergenic
GAAATGACTCCAAGCGATGC+AGG 0.544680 6:+23424247 MsG0680031622.01.T01:CDS
AGGACCATAGAACAACAAAT+GGG 0.544857 6:-23422542 None:intergenic
TGTTTATAAGTGGTAGCCGA+TGG 0.545940 6:+23423653 MsG0680031622.01.T01:CDS
CAAGCAAACAATTCCTCCAA+TGG 0.546136 6:+23426081 MsG0680031622.01.T01:CDS
TGGCAAGAAAACCCTAATCA+TGG 0.546816 6:+23422573 MsG0680031622.01.T01:CDS
TAGGATGCGCCTTGGACAGA+AGG 0.549273 6:+23426837 MsG0680031622.01.T01:CDS
CAGGAACATAGGATGCGCCT+TGG 0.553627 6:+23426829 MsG0680031622.01.T01:intron
AATTGCATCTGACATAATGA+AGG 0.560795 6:+23426126 MsG0680031622.01.T01:CDS
GCCAAATGTTGCAATGAGGA+AGG 0.563630 6:-23427714 None:intergenic
AATTCCTCCAATGGATTGGG+AGG 0.570842 6:+23426090 MsG0680031622.01.T01:CDS
AACATGTGAATTAGGATACA+AGG 0.582846 6:-23427187 None:intergenic
ATATCTTAGTGCTTCCACCT+TGG 0.586490 6:+23424390 MsG0680031622.01.T01:CDS
TATTCCTCCCAATCCATTGG+AGG 0.588089 6:-23426094 None:intergenic
TGCAACATTTGGCTGAAGGA+TGG 0.588662 6:+23427724 MsG0680031622.01.T01:exon
GTATAGCAGAGAAATCAAAT+CGG 0.601405 6:+23425864 MsG0680031622.01.T01:CDS
ACCTTCAAAATGATCTCTGG+AGG 0.601868 6:-23426385 None:intergenic
GTTTATAAGTGGTAGCCGAT+GGG 0.620281 6:+23423654 MsG0680031622.01.T01:CDS
ATCAAATCGGAATTTGAGGA+GGG 0.625589 6:+23425877 MsG0680031622.01.T01:CDS
TTACATAATATGCTGCCCAA+TGG 0.630713 6:-23426544 None:intergenic
AATCAAATCGGAATTTGAGG+AGG 0.632114 6:+23425876 MsG0680031622.01.T01:CDS
GAGAGAGAAGAACGATGTTG+TGG 0.633054 6:+23422338 MsG0680031622.01.T01:exon
ACAACCTAAAGCATATGACA+TGG 0.643401 6:-23426318 None:intergenic
GAGCCTTATCTCATCAAATG+TGG 0.652227 6:-23423623 None:intergenic
TCACAGTGTCAAAATTGTGG+TGG 0.653666 6:-23422317 None:intergenic
CAACCTAAAGCATATGACAT+GGG 0.660925 6:-23426317 None:intergenic
ATACGAGCAGCAAAACCAGA+AGG 0.663121 6:-23425845 None:intergenic
TTCAGCCAAATGTTGCAATG+AGG 0.665561 6:-23427718 None:intergenic
TGAAGGTGGAAAATAGGACA+TGG 0.666148 6:+23423848 MsG0680031622.01.T01:CDS
CATATGACATGGGAGATGAA+AGG 0.671888 6:-23426307 None:intergenic
GTGGAGCTTACTGTTGGACA+CGG 0.710106 6:-23425922 None:intergenic
ATTTGTCAAACAAACCAAGG+TGG 0.711473 6:-23424404 None:intergenic
GGACCATAGAACAACAAATG+GGG 0.717696 6:-23422541 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGATTAATTCTTTAAAT+AGG + Chr6:23427477-23427496 MsG0680031622.01.T01:intron 10.0%
!! TATGAATAAGTTATTTATAT+AGG - Chr6:23423163-23423182 None:intergenic 10.0%
!! TCAATAAAAAATATATGTAT+TGG - Chr6:23425488-23425507 None:intergenic 10.0%
!!! TTTAACTTTTATTTTTTTTC+TGG + Chr6:23424952-23424971 MsG0680031622.01.T01:intron 10.0%
!!! TTTTTAATTGTATTAATTAC+CGG + Chr6:23427769-23427788 MsG0680031622.01.T01:three_prime_UTR 10.0%
!! AATAAATTGTATATACAAAC+AGG + Chr6:23423221-23423240 MsG0680031622.01.T01:intron 15.0%
!! ATAAATTGTATATACAAACA+GGG + Chr6:23423222-23423241 MsG0680031622.01.T01:intron 15.0%
!! CATTAGTAATAAAAGATTTA+AGG + Chr6:23423507-23423526 MsG0680031622.01.T01:intron 15.0%
!! GAAAAAAAAAATACACATTT+GGG + Chr6:23422665-23422684 MsG0680031622.01.T01:intron 15.0%
!! GGTTTATAAAAAGTAAATAA+TGG + Chr6:23427349-23427368 MsG0680031622.01.T01:intron 15.0%
!! TTATATAAGAAACACAATTA+AGG - Chr6:23422464-23422483 None:intergenic 15.0%
!!! TAAATTTTGTGAGATTATTT+AGG + Chr6:23423009-23423028 MsG0680031622.01.T01:intron 15.0%
!!! TTGTTTCAATTAGAATTTTT+TGG + Chr6:23422643-23422662 MsG0680031622.01.T01:intron 15.0%
!! AAAAGTTAAAAACTTATGCA+AGG - Chr6:23424942-23424961 None:intergenic 20.0%
!! ATTATAGAGTTTATAGAAAG+TGG + Chr6:23427573-23427592 MsG0680031622.01.T01:intron 20.0%
!! CAAGCAAAATAATAATAATG+AGG - Chr6:23424845-23424864 None:intergenic 20.0%
!! CATAAAATTTATCAACTTCA+AGG - Chr6:23426226-23426245 None:intergenic 20.0%
!! GGAAAAAAAAAATACACATT+TGG + Chr6:23422664-23422683 MsG0680031622.01.T01:intron 20.0%
!! TAATGTAAAACAAATACAGT+AGG - Chr6:23426640-23426659 None:intergenic 20.0%
!! TCAAGAAATAATCAAAGAAA+TGG + Chr6:23424291-23424310 MsG0680031622.01.T01:CDS 20.0%
!! TCGCTTGTAAATATAAAAAT+AGG + Chr6:23422844-23422863 MsG0680031622.01.T01:intron 20.0%
!! TGAACATTCAATTTATAGAA+TGG - Chr6:23425744-23425763 None:intergenic 20.0%
!! TTAATTCTTTAAATAGGTCT+TGG + Chr6:23427483-23427502 MsG0680031622.01.T01:intron 20.0%
!! TTTATAAACATTGTGGATAT+GGG + Chr6:23425555-23425574 MsG0680031622.01.T01:intron 20.0%
!!! AACTCTATAATCTCTTTTTT+AGG - Chr6:23427564-23427583 None:intergenic 20.0%
!!! ACAAATCTTAGAATTTTAGT+CGG - Chr6:23423728-23423747 None:intergenic 20.0%
!!! ACATTCTTGTAATTTTTGTT+AGG + Chr6:23422483-23422502 MsG0680031622.01.T01:intron 20.0%
!!! ATTTTAATTTTGAAGTACTG+TGG + Chr6:23424155-23424174 MsG0680031622.01.T01:intron 20.0%
!!! CATTCTTGTAATTTTTGTTA+GGG + Chr6:23422484-23422503 MsG0680031622.01.T01:intron 20.0%
!!! CTTTTCAAAGATTTGTTTTA+TGG + Chr6:23425991-23426010 MsG0680031622.01.T01:intron 20.0%
!!! TGTTTTCTTTATAAACATTG+TGG + Chr6:23425548-23425567 MsG0680031622.01.T01:intron 20.0%
!!! TTAATTTTGAAGAATGTAGT+TGG + Chr6:23423431-23423450 MsG0680031622.01.T01:intron 20.0%
!!! TTATTTTGTATAAACCTGTT+GGG + Chr6:23426954-23426973 MsG0680031622.01.T01:intron 20.0%
!!! TTTATTTTGTATAAACCTGT+TGG + Chr6:23426953-23426972 MsG0680031622.01.T01:intron 20.0%
!!! TTTTTTTATATTGCAGGTTT+CGG + Chr6:23422507-23422526 MsG0680031622.01.T01:intron 20.0%
! AAAAACTGAAGTAAGCTAAA+AGG - Chr6:23424475-23424494 None:intergenic 25.0%
! AAAAGGATAAGAAAAAGGTA+AGG - Chr6:23424458-23424477 None:intergenic 25.0%
! AAATACTTGGATACTTATCA+GGG + Chr6:23427133-23427152 MsG0680031622.01.T01:intron 25.0%
! AACGACAACACAAAAATATA+AGG - Chr6:23423911-23423930 None:intergenic 25.0%
! AAGCTAAAAGGATAAGAAAA+AGG - Chr6:23424463-23424482 None:intergenic 25.0%
! AAGGGAATTATTACCATAAA+AGG - Chr6:23425119-23425138 None:intergenic 25.0%
! AATAATGGTTATAGCAATGA+CGG + Chr6:23427364-23427383 MsG0680031622.01.T01:intron 25.0%
! AATTACGCATATACAATTCT+TGG - Chr6:23425520-23425539 None:intergenic 25.0%
! ACGACAACACAAAAATATAA+GGG - Chr6:23423910-23423929 None:intergenic 25.0%
! AGATATAAAATTTCCTTACC+TGG - Chr6:23424707-23424726 None:intergenic 25.0%
! AGCATTTCATAATAAGTCTT+AGG - Chr6:23425188-23425207 None:intergenic 25.0%
! ATTTACTTCTGTTTACTTCT+TGG + Chr6:23423774-23423793 MsG0680031622.01.T01:intron 25.0%
! CATATTAAATGATAAGCTTG+TGG - Chr6:23425944-23425963 None:intergenic 25.0%
! CTAAATCAGTTAATATCAAC+AGG + Chr6:23427328-23427347 MsG0680031622.01.T01:intron 25.0%
! CTTTATAAACATTGTGGATA+TGG + Chr6:23425554-23425573 MsG0680031622.01.T01:intron 25.0%
! GCATTTCATAATAAGTCTTA+GGG - Chr6:23425187-23425206 None:intergenic 25.0%
! GTTCATCTTTACTAAATCTA+TGG + Chr6:23425759-23425778 MsG0680031622.01.T01:intron 25.0%
! TAAGACTTATTATGAAATGC+TGG + Chr6:23425187-23425206 MsG0680031622.01.T01:intron 25.0%
! TAGTGAAAGTAAAATGTGTT+GGG + Chr6:23423316-23423335 MsG0680031622.01.T01:intron 25.0%
! TATAGAAAGTGGATATTGAT+TGG + Chr6:23427584-23427603 MsG0680031622.01.T01:intron 25.0%
! TGATATTTCATTTCAGAATC+TGG + Chr6:23426581-23426600 MsG0680031622.01.T01:intron 25.0%
! TTATTCGTACATTAAGACAA+CGG - Chr6:23424668-23424687 None:intergenic 25.0%
! TTGACAAATGTTAGTAACTT+AGG + Chr6:23424418-23424437 MsG0680031622.01.T01:intron 25.0%
!! AAAAGGAATTTTCTTTGCTT+TGG + Chr6:23424750-23424769 MsG0680031622.01.T01:intron 25.0%
!! ATAGAAAGTGGATATTGATT+GGG + Chr6:23427585-23427604 MsG0680031622.01.T01:intron 25.0%
!! ATGGTAATAATTCCCTTTTA+TGG + Chr6:23425122-23425141 MsG0680031622.01.T01:intron 25.0%
!! CAGCTTTATGTTATTATTCT+TGG + Chr6:23424040-23424059 MsG0680031622.01.T01:intron 25.0%
!! CTTTTATTACTAATGCAACA+GGG - Chr6:23423502-23423521 None:intergenic 25.0%
!! TCAAAAACAGTTTCCTTTTA+TGG + Chr6:23425103-23425122 MsG0680031622.01.T01:intron 25.0%
!! TCTTTTATTACTAATGCAAC+AGG - Chr6:23423503-23423522 None:intergenic 25.0%
!! TTAACTTTTACAGATAGTGA+CGG + Chr6:23423345-23423364 MsG0680031622.01.T01:intron 25.0%
!!! ACATTTGGGTTCAATTTTTT+CGG + Chr6:23422679-23422698 MsG0680031622.01.T01:intron 25.0%
!!! CAATTTTTTGAGATTTTGAG+CGG - Chr6:23422416-23422435 None:intergenic 25.0%
!!! TTAGGGTTTTTTTATATTGC+AGG + Chr6:23422501-23422520 MsG0680031622.01.T01:intron 25.0%
AAAACAGTGTTGTCAAATTG+CGG - Chr6:23425392-23425411 None:intergenic 30.0%
AAACACACATATGTATCGTT+TGG + Chr6:23423942-23423961 MsG0680031622.01.T01:intron 30.0%
AAAGGGAAGAAAGGATTTAA+AGG + Chr6:23424337-23424356 MsG0680031622.01.T01:CDS 30.0%
AACAAAATCTCACTTCTCAA+AGG - Chr6:23427225-23427244 None:intergenic 30.0%
AACACACATATGTATCGTTT+GGG + Chr6:23423943-23423962 MsG0680031622.01.T01:intron 30.0%
AACATGTGAATTAGGATACA+AGG - Chr6:23427190-23427209 None:intergenic 30.0%
AACATTTGTCAAACAAACCA+AGG - Chr6:23424410-23424429 None:intergenic 30.0%
AATAGACCTATTGATGCTAA+AGG + Chr6:23424319-23424338 MsG0680031622.01.T01:CDS 30.0%
AATTGCATCTGACATAATGA+AGG + Chr6:23426126-23426145 MsG0680031622.01.T01:CDS 30.0%
ACTGGTTAAGGATATGAAAA+AGG + Chr6:23425028-23425047 MsG0680031622.01.T01:intron 30.0%
AGAAATCAAATCGGAATTTG+AGG + Chr6:23425873-23425892 MsG0680031622.01.T01:CDS 30.0%
AGTGTCTTAACAGAGAATAA+CGG - Chr6:23424978-23424997 None:intergenic 30.0%
AGTTCATTGGTAAGAAAGAA+GGG + Chr6:23425813-23425832 MsG0680031622.01.T01:CDS 30.0%
ATAGACCTATTGATGCTAAA+GGG + Chr6:23424320-23424339 MsG0680031622.01.T01:CDS 30.0%
ATTCTCTGTTAAGACACTTA+GGG + Chr6:23424980-23424999 MsG0680031622.01.T01:intron 30.0%
ATTTGATATTAGGACCTGTT+TGG + Chr6:23422957-23422976 MsG0680031622.01.T01:intron 30.0%
CAAATACTTGGATACTTATC+AGG + Chr6:23427132-23427151 MsG0680031622.01.T01:intron 30.0%
CGAAATGCAAATCAAACTAT+TGG - Chr6:23424082-23424101 None:intergenic 30.0%
CGCTCAAAATCTCAAAAAAT+TGG + Chr6:23422414-23422433 MsG0680031622.01.T01:CDS 30.0%
CTAGTGAAAGTAAAATGTGT+TGG + Chr6:23423315-23423334 MsG0680031622.01.T01:intron 30.0%
GCAAGTCTCAAATGATAATA+TGG - Chr6:23425903-23425922 None:intergenic 30.0%
GTAGAGAAGGAAAAAAAAGA+TGG - Chr6:23427653-23427672 None:intergenic 30.0%
GTATAGCAGAGAAATCAAAT+CGG + Chr6:23425864-23425883 MsG0680031622.01.T01:CDS 30.0%
TAAAATAGTGTCCATTGACA+TGG - Chr6:23425689-23425708 None:intergenic 30.0%
TAAATCTATGGAGATCTATG+TGG + Chr6:23425771-23425790 MsG0680031622.01.T01:intron 30.0%
TAACTCAACTCTTACAAAAC+CGG - Chr6:23423702-23423721 None:intergenic 30.0%
TAGAGAATGAGTGAAATATC+CGG - Chr6:23427791-23427810 None:intergenic 30.0%
TAGTATGACTATGATATGCT+CGG + Chr6:23427049-23427068 MsG0680031622.01.T01:intron 30.0%
TATTCCTCCCAAATTACTAA+GGG - Chr6:23423991-23424010 None:intergenic 30.0%
TATTCGTACATTAAGACAAC+GGG - Chr6:23424667-23424686 None:intergenic 30.0%
TATTCTCTGTTAAGACACTT+AGG + Chr6:23424979-23424998 MsG0680031622.01.T01:intron 30.0%
TGACAACAATTCTATGTAAG+CGG - Chr6:23422927-23422946 None:intergenic 30.0%
TGATTGGGATATAAGGTAAT+AGG + Chr6:23427600-23427619 MsG0680031622.01.T01:intron 30.0%
TGGAGTCATTTCAATATGAT+TGG - Chr6:23424239-23424258 None:intergenic 30.0%
TGGTTAAGCATACCATAAAA+GGG - Chr6:23425137-23425156 None:intergenic 30.0%
TGTACACTAAACTGAATCAT+TGG + Chr6:23424114-23424133 MsG0680031622.01.T01:intron 30.0%
TTAAAAACTGGTTATCGAAG+AGG - Chr6:23427101-23427120 None:intergenic 30.0%
TTAAACTGTGATTGCGATAA+CGG + Chr6:23422886-23422905 MsG0680031622.01.T01:intron 30.0%
TTATATTTACAAGCGAATCC+CGG - Chr6:23422840-23422859 None:intergenic 30.0%
TTTACCTTCAAAATGATCTC+TGG - Chr6:23426391-23426410 None:intergenic 30.0%
TTTCACTCATTCTCTAGTTA+AGG + Chr6:23427795-23427814 MsG0680031622.01.T01:three_prime_UTR 30.0%
TTTGTAGATGCTCATAAACT+TGG - Chr6:23427693-23427712 None:intergenic 30.0%
! AACTGATTTAGTGTGTGTTT+GGG - Chr6:23427319-23427338 None:intergenic 30.0%
! ATGCAAAGTGAAAACCTTTT+TGG - Chr6:23426160-23426179 None:intergenic 30.0%
! GACTCAAGATTATGATGTTT+TGG + Chr6:23427852-23427871 MsG0680031622.01.T01:three_prime_UTR 30.0%
! GTTGATGTTTTACAGTTCAT+TGG + Chr6:23425800-23425819 MsG0680031622.01.T01:CDS 30.0%
! GTTTTGTAAGAGTTGAGTTA+GGG + Chr6:23423702-23423721 MsG0680031622.01.T01:intron 30.0%
! TAACTGATTTAGTGTGTGTT+TGG - Chr6:23427320-23427339 None:intergenic 30.0%
! TAATGAAGAGTACATGGTAA+TGG - Chr6:23426765-23426784 None:intergenic 30.0%
! TCTTCGATAACCAGTTTTTA+AGG + Chr6:23427100-23427119 MsG0680031622.01.T01:intron 30.0%
! TGCAAAGTGAAAACCTTTTT+GGG - Chr6:23426159-23426178 None:intergenic 30.0%
! TGGATATTGATTGGGATATA+AGG + Chr6:23427593-23427612 MsG0680031622.01.T01:intron 30.0%
! TTTGGTATTTTGTAAGCACT+GGG + Chr6:23424768-23424787 MsG0680031622.01.T01:intron 30.0%
! TTTGGTTTATTCTCTGAGAA+TGG + Chr6:23423456-23423475 MsG0680031622.01.T01:intron 30.0%
! TTTTGTTCCACTCTCTATAA+GGG + Chr6:23425613-23425632 MsG0680031622.01.T01:intron 30.0%
! TTTTTGTTCCACTCTCTATA+AGG + Chr6:23425612-23425631 MsG0680031622.01.T01:intron 30.0%
!! AATGCAGCTGATTTGATATT+AGG + Chr6:23422947-23422966 MsG0680031622.01.T01:intron 30.0%
!! GATAACCAGTTTTTAAGGAA+GGG + Chr6:23427105-23427124 MsG0680031622.01.T01:intron 30.0%
!! TAGTTTGATTTGCATTTCGT+TGG + Chr6:23424083-23424102 MsG0680031622.01.T01:intron 30.0%
!! TTGTAACATGTGTTACTTGA+AGG + Chr6:23426044-23426063 MsG0680031622.01.T01:intron 30.0%
!!! AATTCCTTTTTTTCCAACCA+AGG - Chr6:23424740-23424759 None:intergenic 30.0%
!!! AGTACTGTGGAATTTTTTTC+AGG + Chr6:23424168-23424187 MsG0680031622.01.T01:intron 30.0%
!!! CATTGTTTTTGTTTGTTCAG+AGG + Chr6:23426468-23426487 MsG0680031622.01.T01:intron 30.0%
!!! CATTTGGGTTCAATTTTTTC+GGG + Chr6:23422680-23422699 MsG0680031622.01.T01:intron 30.0%
!!! CTGAATCATTGGTTTTCATT+TGG + Chr6:23424125-23424144 MsG0680031622.01.T01:intron 30.0%
!!! TATGATGTTTTGGTTAGTAG+AGG + Chr6:23427862-23427881 MsG0680031622.01.T01:three_prime_UTR 30.0%
!!! TGAAGAATGTAGTTGGTTTT+TGG + Chr6:23423438-23423457 MsG0680031622.01.T01:intron 30.0%
AAACAATTCCTCCAATGGAT+TGG + Chr6:23426086-23426105 MsG0680031622.01.T01:CDS 35.0%
AAATAGGCTCTTTGTTAGCT+AGG + Chr6:23422860-23422879 MsG0680031622.01.T01:intron 35.0%
AAATGCTGTCAATGTAGAGA+AGG - Chr6:23427666-23427685 None:intergenic 35.0%
AACAAACGAGAAAGACAACA+GGG - Chr6:23423559-23423578 None:intergenic 35.0%
AAGGACCATAGAACAACAAA+TGG - Chr6:23422546-23422565 None:intergenic 35.0%
AATCAAATCGGAATTTGAGG+AGG + Chr6:23425876-23425895 MsG0680031622.01.T01:CDS 35.0%
AATCAGCTACTTCATACTCT+TGG - Chr6:23426788-23426807 None:intergenic 35.0%
ACAACCTAAAGCATATGACA+TGG - Chr6:23426321-23426340 None:intergenic 35.0%
AGGACCATAGAACAACAAAT+GGG - Chr6:23422545-23422564 None:intergenic 35.0%
AGGATAAGAAAAAGGTAAGG+TGG - Chr6:23424455-23424474 None:intergenic 35.0%
AGTACCTTCGATGTGAAAAA+TGG - Chr6:23426863-23426882 None:intergenic 35.0%
ATAGTCATACTACTCGATGT+GGG - Chr6:23427041-23427060 None:intergenic 35.0%
ATATATTCCTCCCAATCCAT+TGG - Chr6:23426100-23426119 None:intergenic 35.0%
ATATTAGGACCTGTTTGGAT+TGG + Chr6:23422962-23422981 MsG0680031622.01.T01:intron 35.0%
ATCAAATCGGAATTTGAGGA+GGG + Chr6:23425877-23425896 MsG0680031622.01.T01:CDS 35.0%
ATGTACGAATAAATGCACCA+AGG + Chr6:23424676-23424695 MsG0680031622.01.T01:intron 35.0%
ATGTCTTCTGCATAAACTCA+GGG + Chr6:23426614-23426633 MsG0680031622.01.T01:intron 35.0%
ATTGACATGGTATTCTATGG+CGG - Chr6:23425676-23425695 None:intergenic 35.0%
ATTGATGCTAAAGGGAAGAA+AGG + Chr6:23424328-23424347 MsG0680031622.01.T01:CDS 35.0%
ATTGTTTGCTTGTCAGTGAA+AGG - Chr6:23426073-23426092 None:intergenic 35.0%
ATTTGTCAAACAAACCAAGG+TGG - Chr6:23424407-23424426 None:intergenic 35.0%
CAAATTGCGGTAAAGTATAG+TGG - Chr6:23425379-23425398 None:intergenic 35.0%
CAACCTAAAGCATATGACAT+GGG - Chr6:23426320-23426339 None:intergenic 35.0%
CAGTTCATTGGTAAGAAAGA+AGG + Chr6:23425812-23425831 MsG0680031622.01.T01:CDS 35.0%
CCAACAGAGACGATTTAAAA+TGG - Chr6:23423815-23423834 None:intergenic 35.0%
CTATCTAAGTCACGACATTA+AGG - Chr6:23423278-23423297 None:intergenic 35.0%
CTATTCCTCCCAAATTACTA+AGG - Chr6:23423992-23424011 None:intergenic 35.0%
CTCGAGAATGTGTTTATAAG+TGG + Chr6:23423643-23423662 MsG0680031622.01.T01:CDS 35.0%
CTGGTTAAGCATACCATAAA+AGG - Chr6:23425138-23425157 None:intergenic 35.0%
GACAATGCTGATATTGTTAG+AGG - Chr6:23422793-23422812 None:intergenic 35.0%
GGAATTTGAACAAACCACTA+TGG - Chr6:23425358-23425377 None:intergenic 35.0%
GTAACCTTGGTTGGAAAAAA+AGG + Chr6:23424733-23424752 MsG0680031622.01.T01:intron 35.0%
GTGAACTAGAACATTGTCTA+GGG - Chr6:23422386-23422405 None:intergenic 35.0%
TAATGTCGTGACTTAGATAG+TGG + Chr6:23423278-23423297 MsG0680031622.01.T01:intron 35.0%
TAGCTGAATGATGTTCTACT+AGG + Chr6:23424879-23424898 MsG0680031622.01.T01:intron 35.0%
TATATCTGCTAGAGTAACCT+TGG + Chr6:23424720-23424739 MsG0680031622.01.T01:intron 35.0%
TATCAGCGTCAGCATATAAA+AGG + Chr6:23422280-23422299 MsG0680031622.01.T01:five_prime_UTR 35.0%
TATTACTAATGCAACAGGGA+AGG - Chr6:23423498-23423517 None:intergenic 35.0%
TCAAATATGCCAATCCAAAC+AGG - Chr6:23422974-23422993 None:intergenic 35.0%
TCAGCATTGTCAATTGAACT+AGG + Chr6:23422802-23422821 MsG0680031622.01.T01:intron 35.0%
TCCATTGACATGGTATTCTA+TGG - Chr6:23425679-23425698 None:intergenic 35.0%
TGAATGATGTTCTACTAGGT+GGG + Chr6:23424883-23424902 MsG0680031622.01.T01:intron 35.0%
TGTACGAATAAATGCACCAA+GGG + Chr6:23424677-23424696 MsG0680031622.01.T01:intron 35.0%
TGTGAACTAGAACATTGTCT+AGG - Chr6:23422387-23422406 None:intergenic 35.0%
TTACATAATATGCTGCCCAA+TGG - Chr6:23426547-23426566 None:intergenic 35.0%
TTCTTCCCTTTAGCATCAAT+AGG - Chr6:23424328-23424347 None:intergenic 35.0%
TTGCAAGATGATAGTAGGTT+AGG + Chr6:23424915-23424934 MsG0680031622.01.T01:intron 35.0%
TTTAAATCGTCTCTGTTGGT+TGG + Chr6:23423816-23423835 MsG0680031622.01.T01:intron 35.0%
! AACAATTCCTCCAATGGATT+GGG + Chr6:23426087-23426106 MsG0680031622.01.T01:CDS 35.0%
! AACATTGATTAGCATATCGC+AGG + Chr6:23425325-23425344 MsG0680031622.01.T01:intron 35.0%
! ACTGATTTAGTGTGTGTTTG+GGG - Chr6:23427318-23427337 None:intergenic 35.0%
! ATGTGATTTCTAGATGGTTG+AGG + Chr6:23423372-23423391 MsG0680031622.01.T01:intron 35.0%
! CCATTTTAAATCGTCTCTGT+TGG + Chr6:23423812-23423831 MsG0680031622.01.T01:intron 35.0%
! CTTTGGTATTTTGTAAGCAC+TGG + Chr6:23424767-23424786 MsG0680031622.01.T01:intron 35.0%
! GGTCTAATGTGATTTCTAGA+TGG + Chr6:23423366-23423385 MsG0680031622.01.T01:intron 35.0%
! GTTGTGTCAAAGCATTCAAA+GGG + Chr6:23425635-23425654 MsG0680031622.01.T01:intron 35.0%
!! AGAACATTGTCTAGGGTTTT+GGG - Chr6:23422379-23422398 None:intergenic 35.0%
!! AGCTTTGGAACATGTGAATT+AGG - Chr6:23427198-23427217 None:intergenic 35.0%
!! CGATAACCAGTTTTTAAGGA+AGG + Chr6:23427104-23427123 MsG0680031622.01.T01:intron 35.0%
!! GAAGTGAGATTTTGTTGTGT+TGG + Chr6:23427229-23427248 MsG0680031622.01.T01:intron 35.0%
!! GGTTTTGTAAGAGTTGAGTT+AGG + Chr6:23423701-23423720 MsG0680031622.01.T01:intron 35.0%
!! TACACCAGTTTTGTCAATTG+CGG + Chr6:23425239-23425258 MsG0680031622.01.T01:intron 35.0%
!! TAGAACATTGTCTAGGGTTT+TGG - Chr6:23422380-23422399 None:intergenic 35.0%
!! TCTTGGTAATGAAGAGTACA+TGG - Chr6:23426771-23426790 None:intergenic 35.0%
!! TGGTTTTGCAAGATGATAGT+AGG + Chr6:23424910-23424929 MsG0680031622.01.T01:intron 35.0%
!! TTTAGGTTGTTTCAAGTTCG+TGG + Chr6:23426331-23426350 MsG0680031622.01.T01:CDS 35.0%
!!! TGTGGAATTTTTTTCAGGCT+GGG + Chr6:23424173-23424192 MsG0680031622.01.T01:intron 35.0%
AAGACAGCTACATCACTTTC+TGG + Chr6:23425443-23425462 MsG0680031622.01.T01:intron 40.0%
ACACTTAGGGAAATGCTAAC+CGG + Chr6:23424993-23425012 MsG0680031622.01.T01:intron 40.0%
ACCTTCAAAATGATCTCTGG+AGG - Chr6:23426388-23426407 None:intergenic 40.0%
AGACAGCTACATCACTTTCT+GGG + Chr6:23425444-23425463 MsG0680031622.01.T01:intron 40.0%
AGAGAGAAGAACGATGTTGT+GGG + Chr6:23422339-23422358 MsG0680031622.01.T01:exon 40.0%
AGGAAGGGTTCTCAAATACT+TGG + Chr6:23427120-23427139 MsG0680031622.01.T01:intron 40.0%
AGTACTAGTGCTCAATGATG+TGG + Chr6:23424524-23424543 MsG0680031622.01.T01:intron 40.0%
ATATCTTAGTGCTTCCACCT+TGG + Chr6:23424390-23424409 MsG0680031622.01.T01:CDS 40.0%
ATTTGTCTCTGCTCTCAATC+AGG + Chr6:23427517-23427536 MsG0680031622.01.T01:intron 40.0%
CAACAAACGAGAAAGACAAC+AGG - Chr6:23423560-23423579 None:intergenic 40.0%
CAAGCAAACAATTCCTCCAA+TGG + Chr6:23426081-23426100 MsG0680031622.01.T01:CDS 40.0%
CATAGTCATACTACTCGATG+TGG - Chr6:23427042-23427061 None:intergenic 40.0%
CATATGACATGGGAGATGAA+AGG - Chr6:23426310-23426329 None:intergenic 40.0%
CATGAGTTTCAAATCGATCC+TGG - Chr6:23427437-23427456 None:intergenic 40.0%
CTATGTTCCTGGTTCAATGA+GGG - Chr6:23426820-23426839 None:intergenic 40.0%
CTCTACATTGACAGCATTTG+TGG + Chr6:23427667-23427686 MsG0680031622.01.T01:intron 40.0%
CTCTCACAGTGTCAAAATTG+TGG - Chr6:23422323-23422342 None:intergenic 40.0%
CTGAATGATGTTCTACTAGG+TGG + Chr6:23424882-23424901 MsG0680031622.01.T01:intron 40.0%
GAGAACCCTTCCTTAAAAAC+TGG - Chr6:23427113-23427132 None:intergenic 40.0%
GAGCCACATTTGATGAGATA+AGG + Chr6:23423620-23423639 MsG0680031622.01.T01:CDS 40.0%
GATAGGGACTTGGGTATTAT+GGG + Chr6:23427002-23427021 MsG0680031622.01.T01:intron 40.0%
GATGTCTTCTGCATAAACTC+AGG + Chr6:23426613-23426632 MsG0680031622.01.T01:intron 40.0%
GCCATAGAATACCATGTCAA+TGG + Chr6:23425675-23425694 MsG0680031622.01.T01:intron 40.0%
GCTGGTACCCTTAGTAATTT+GGG + Chr6:23423981-23424000 MsG0680031622.01.T01:intron 40.0%
GGAAAATAGGACATGGAAAG+TGG + Chr6:23423855-23423874 MsG0680031622.01.T01:CDS 40.0%
GGACCATAGAACAACAAATG+GGG - Chr6:23422544-23422563 None:intergenic 40.0%
GTAGAACATCATTCAGCTAC+TGG - Chr6:23424878-23424897 None:intergenic 40.0%
GTCAATTGAACTAGGCCTTA+CGG + Chr6:23422810-23422829 MsG0680031622.01.T01:intron 40.0%
GTTTATAAGTGGTAGCCGAT+GGG + Chr6:23423654-23423673 MsG0680031622.01.T01:CDS 40.0%
TATGTTCCTGGTTCAATGAG+GGG - Chr6:23426819-23426838 None:intergenic 40.0%
TCACAGTGTCAAAATTGTGG+TGG - Chr6:23422320-23422339 None:intergenic 40.0%
TCATTGCAACATTTGGCTGA+AGG + Chr6:23427720-23427739 MsG0680031622.01.T01:CDS 40.0%
TCCTATCATTGCACACATTC+AGG - Chr6:23426896-23426915 None:intergenic 40.0%
TCCTGAATGTGTGCAATGAT+AGG + Chr6:23426892-23426911 MsG0680031622.01.T01:intron 40.0%
TCCTTCCTCATTGCAACATT+TGG + Chr6:23427713-23427732 MsG0680031622.01.T01:CDS 40.0%
TCTCCCATGTCATATGCTTT+AGG + Chr6:23426314-23426333 MsG0680031622.01.T01:CDS 40.0%
TGAAGGTGGAAAATAGGACA+TGG + Chr6:23423848-23423867 MsG0680031622.01.T01:CDS 40.0%
TGATAGGGACTTGGGTATTA+TGG + Chr6:23427001-23427020 MsG0680031622.01.T01:intron 40.0%
TGCTGGTACCCTTAGTAATT+TGG + Chr6:23423980-23423999 MsG0680031622.01.T01:intron 40.0%
TGGCAAGAAAACCCTAATCA+TGG + Chr6:23422573-23422592 MsG0680031622.01.T01:CDS 40.0%
TGTATTTCTCCATCGTTCTG+CGG - Chr6:23424581-23424600 None:intergenic 40.0%
TGTTTATAAGTGGTAGCCGA+TGG + Chr6:23423653-23423672 MsG0680031622.01.T01:CDS 40.0%
TTAGTCATCTCCTTACAAGC+CGG + Chr6:23423680-23423699 MsG0680031622.01.T01:intron 40.0%
TTCAGCCAAATGTTGCAATG+AGG - Chr6:23427721-23427740 None:intergenic 40.0%
TTCAGGTGAAGGTGGAAAAT+AGG + Chr6:23423842-23423861 MsG0680031622.01.T01:intron 40.0%
TTGTGGATATGGGATAAGTC+AGG + Chr6:23425565-23425584 MsG0680031622.01.T01:intron 40.0%
TTTGTCTCTGCTCTCAATCA+GGG + Chr6:23427518-23427537 MsG0680031622.01.T01:intron 40.0%
! AAAACAACCTTTTCAGCACC+AGG - Chr6:23422622-23422641 None:intergenic 40.0%
! ACTGGGATGATAGTTTTCTC+TGG + Chr6:23424785-23424804 MsG0680031622.01.T01:intron 40.0%
! GAGCCTTATCTCATCAAATG+TGG - Chr6:23423626-23423645 None:intergenic 40.0%
! GATGATAGTTTTCTCTGGCA+GGG + Chr6:23424790-23424809 MsG0680031622.01.T01:intron 40.0%
! GGGAGTTTCTATGATTTTGC+TGG + Chr6:23423963-23423982 MsG0680031622.01.T01:intron 40.0%
! GGTTGTGTCAAAGCATTCAA+AGG + Chr6:23425634-23425653 MsG0680031622.01.T01:intron 40.0%
! TCCTCCAGAGATCATTTTGA+AGG + Chr6:23426384-23426403 MsG0680031622.01.T01:CDS 40.0%
! TTGTTGTTCTATGGTCCTTC+AGG + Chr6:23422547-23422566 MsG0680031622.01.T01:CDS 40.0%
!! AGGTGGAAGCACTAAGATAT+TGG - Chr6:23424390-23424409 None:intergenic 40.0%
!! CTACATCACTTTCTGGGATT+CGG + Chr6:23425450-23425469 MsG0680031622.01.T01:intron 40.0%
!! GAAGAGTACATGGTAATGGT+GGG - Chr6:23426761-23426780 None:intergenic 40.0%
!! TATAGCAATGACGGATAGTG+TGG + Chr6:23427373-23427392 MsG0680031622.01.T01:intron 40.0%
!! TCAAACTATTGGCTCAACAG+TGG - Chr6:23424071-23424090 None:intergenic 40.0%
!! TCTTACAAAACCGGCTTGTA+AGG - Chr6:23423693-23423712 None:intergenic 40.0%
!! TGAAGAGTACATGGTAATGG+TGG - Chr6:23426762-23426781 None:intergenic 40.0%
!! TGTCCCCATTTGTTGTTCTA+TGG + Chr6:23422538-23422557 MsG0680031622.01.T01:CDS 40.0%
!!! AAGGCCATTTTTCACATCGA+AGG + Chr6:23426856-23426875 MsG0680031622.01.T01:CDS 40.0%
!!! CTGTGGAATTTTTTTCAGGC+TGG + Chr6:23424172-23424191 MsG0680031622.01.T01:intron 40.0%
!!! GATGTTTTGGTTAGTAGAGG+TGG + Chr6:23427865-23427884 MsG0680031622.01.T01:three_prime_UTR 40.0%
AAATAGGTCTTGGTACCTCG+AGG + Chr6:23427493-23427512 MsG0680031622.01.T01:intron 45.0%
AAGCTTGTGGAGCTTACTGT+TGG - Chr6:23425931-23425950 None:intergenic 45.0%
AATAGGTCTTGGTACCTCGA+GGG + Chr6:23427494-23427513 MsG0680031622.01.T01:intron 45.0%
AATTCTTCTACTCGCCATGG+GGG + Chr6:23426977-23426996 MsG0680031622.01.T01:intron 45.0%
AGTGTCAAAATTGTGGTGGC+GGG - Chr6:23422316-23422335 None:intergenic 45.0%
ATACGAGCAGCAAAACCAGA+AGG - Chr6:23425848-23425867 None:intergenic 45.0%
ATCAGTCTAGACGCGTGTTT+GGG + Chr6:23427160-23427179 MsG0680031622.01.T01:CDS 45.0%
ATGTTCCTGGTTCAATGAGG+GGG - Chr6:23426818-23426837 None:intergenic 45.0%
CACCAGGTCCAAACATTTGA+CGG - Chr6:23422606-23422625 None:intergenic 45.0%
CAGTGTCAAAATTGTGGTGG+CGG - Chr6:23422317-23422336 None:intergenic 45.0%
CCTATGTTCCTGGTTCAATG+AGG - Chr6:23426821-23426840 None:intergenic 45.0%
CCTCATTGAACCAGGAACAT+AGG + Chr6:23426818-23426837 MsG0680031622.01.T01:intron 45.0%
CGAGTAGAAGAATTCCCAAC+AGG - Chr6:23426971-23426990 None:intergenic 45.0%
CGATCCGCAATTGACAAAAC+TGG - Chr6:23425246-23425265 None:intergenic 45.0%
CTGCTCTCAATCAGGGAATA+CGG + Chr6:23427525-23427544 MsG0680031622.01.T01:intron 45.0%
GAAAAATGGCCTTCTGTCCA+AGG - Chr6:23426849-23426868 None:intergenic 45.0%
GAAGCATGAAGTCTGCCATT+GGG + Chr6:23426529-23426548 MsG0680031622.01.T01:CDS 45.0%
GAAGGGATACAACTTCCTTC+TGG + Chr6:23425830-23425849 MsG0680031622.01.T01:CDS 45.0%
GAATTCTTCTACTCGCCATG+GGG + Chr6:23426976-23426995 MsG0680031622.01.T01:intron 45.0%
GACACAACCCTTATAGAGAG+TGG - Chr6:23425623-23425642 None:intergenic 45.0%
GAGAGAGAAGAACGATGTTG+TGG + Chr6:23422338-23422357 MsG0680031622.01.T01:exon 45.0%
GAGTAGGTTCCTTAAACACG+TGG + Chr6:23427410-23427429 MsG0680031622.01.T01:intron 45.0%
GATTAGCATATCGCAGGTTG+CGG + Chr6:23425331-23425350 MsG0680031622.01.T01:intron 45.0%
GCACTTCTCCGTCAAATGTT+TGG + Chr6:23422595-23422614 MsG0680031622.01.T01:CDS 45.0%
GCCAAATGTTGCAATGAGGA+AGG - Chr6:23427717-23427736 None:intergenic 45.0%
GCTGTAGCGATATAGCATAG+CGG - Chr6:23425292-23425311 None:intergenic 45.0%
GGAATTCTTCTACTCGCCAT+GGG + Chr6:23426975-23426994 MsG0680031622.01.T01:intron 45.0%
GGAGATGACTAACTACCCAT+CGG - Chr6:23423672-23423691 None:intergenic 45.0%
GGTACCCTTAGTAATTTGGG+AGG + Chr6:23423984-23424003 MsG0680031622.01.T01:intron 45.0%
GGTGTAGCATCTAAGTCGTT+TGG + Chr6:23427070-23427089 MsG0680031622.01.T01:intron 45.0%
GTACATTAAGACAACGGGAG+CGG - Chr6:23424662-23424681 None:intergenic 45.0%
TATTCCTCCCAATCCATTGG+AGG - Chr6:23426097-23426116 None:intergenic 45.0%
TATTTACAAGCGAATCCCGG+TGG - Chr6:23422837-23422856 None:intergenic 45.0%
TCTGCTAGAGTAACCTTGGT+TGG + Chr6:23424724-23424743 MsG0680031622.01.T01:intron 45.0%
TGAAGCATGAAGTCTGCCAT+TGG + Chr6:23426528-23426547 MsG0680031622.01.T01:CDS 45.0%
TGAAGGAACAGAGCCCAAAA+AGG + Chr6:23426143-23426162 MsG0680031622.01.T01:CDS 45.0%
TGCAACATTTGGCTGAAGGA+TGG + Chr6:23427724-23427743 MsG0680031622.01.T01:exon 45.0%
TTGCGGATCGCAGAAAATAG+TGG + Chr6:23425256-23425275 MsG0680031622.01.T01:intron 45.0%
! ACACACAACTGCGAGGTTTT+GGG + Chr6:23422742-23422761 MsG0680031622.01.T01:intron 45.0%
! GGATGATAGTTTTCTCTGGC+AGG + Chr6:23424789-23424808 MsG0680031622.01.T01:intron 45.0%
! GGCTGCTTTATGAGCTATTG+AGG + Chr6:23426489-23426508 MsG0680031622.01.T01:CDS 45.0%
! GTTTTCTTGCCAGAACCTGA+AGG - Chr6:23422565-23422584 None:intergenic 45.0%
! TCTCTGTTGGTTGGTGTTTC+AGG + Chr6:23423825-23423844 MsG0680031622.01.T01:intron 45.0%
! TTCTATGGTCCTTCAGGTTC+TGG + Chr6:23422553-23422572 MsG0680031622.01.T01:CDS 45.0%
! TTGGTTGGTGTTTCAGGTGA+AGG + Chr6:23423831-23423850 MsG0680031622.01.T01:intron 45.0%
! TTTTTCCCCCTCATTGAACC+AGG + Chr6:23426810-23426829 MsG0680031622.01.T01:intron 45.0%
!! AATTCCTCCAATGGATTGGG+AGG + Chr6:23426090-23426109 MsG0680031622.01.T01:CDS 45.0%
!! ACGGAGAAGTGCCATGATTA+GGG - Chr6:23422587-23422606 None:intergenic 45.0%
!! TGTTCTACTAGGTGGGTTGT+TGG + Chr6:23424890-23424909 MsG0680031622.01.T01:intron 45.0%
!!! CATTGTCTAGGGTTTTGGGA+CGG - Chr6:23422375-23422394 None:intergenic 45.0%
!!! GAGGTTTTGGGTTTGAACCT+GGG + Chr6:23422754-23422773 MsG0680031622.01.T01:intron 45.0%
AAATGCACCAAGGGAAGACC+AGG + Chr6:23424686-23424705 MsG0680031622.01.T01:intron 50.0%
ACATTCTCTCCGCAGAACGA+TGG + Chr6:23424569-23424588 MsG0680031622.01.T01:intron 50.0%
ACTCGATGTGGGACTTAGAC+AGG - Chr6:23427030-23427049 None:intergenic 50.0%
AGTCTTAGGGTCCTGCTAAC+CGG - Chr6:23425174-23425193 None:intergenic 50.0%
ATATCCTTAACCAGTGCCCC+GGG - Chr6:23425023-23425042 None:intergenic 50.0%
ATTAAGACAACGGGAGCGGA+TGG - Chr6:23424658-23424677 None:intergenic 50.0%
CAGGGACTTAGTCACAATCG+TGG + Chr6:23423240-23423259 MsG0680031622.01.T01:intron 50.0%
CATATCCTTAACCAGTGCCC+CGG - Chr6:23425024-23425043 None:intergenic 50.0%
CATCAGTCTAGACGCGTGTT+TGG + Chr6:23427159-23427178 MsG0680031622.01.T01:CDS 50.0%
CTCCGTCAAATGTTTGGACC+TGG + Chr6:23422601-23422620 MsG0680031622.01.T01:CDS 50.0%
CTCGATGTGGGACTTAGACA+GGG - Chr6:23427029-23427048 None:intergenic 50.0%
CTTCTCAAAGGACGCAGCTT+TGG - Chr6:23427213-23427232 None:intergenic 50.0%
GAAATGACTCCAAGCGATGC+AGG + Chr6:23424247-23424266 MsG0680031622.01.T01:CDS 50.0%
GAGGTTTAACACCTTCACCC+AGG - Chr6:23422774-23422793 None:intergenic 50.0%
GATCCTGGACCACGTGTTTA+AGG - Chr6:23427422-23427441 None:intergenic 50.0%
GGGAATTCTTCTACTCGCCA+TGG + Chr6:23426974-23426993 MsG0680031622.01.T01:intron 50.0%
GTGGAGCTTACTGTTGGACA+CGG - Chr6:23425925-23425944 None:intergenic 50.0%
GTTCCTTAAACACGTGGTCC+AGG + Chr6:23427416-23427435 MsG0680031622.01.T01:intron 50.0%
TTGGGTTTGAACCTGGGTGA+AGG + Chr6:23422760-23422779 MsG0680031622.01.T01:intron 50.0%
! CACACACAACTGCGAGGTTT+TGG + Chr6:23422741-23422760 MsG0680031622.01.T01:intron 50.0%
! GTTGGTGTTTCAGGTGAAGG+TGG + Chr6:23423834-23423853 MsG0680031622.01.T01:intron 50.0%
! GTTTGGACCTGGTGCTGAAA+AGG + Chr6:23422612-23422631 MsG0680031622.01.T01:CDS 50.0%
! TTCCTTACCTGGTCTTCCCT+TGG - Chr6:23424696-23424715 None:intergenic 50.0%
!! ACAGGGAAGGTGCTTACACA+AGG - Chr6:23423485-23423504 None:intergenic 50.0%
!! ACATGGTAATGGTGGGAGGA+GGG - Chr6:23426754-23426773 None:intergenic 50.0%
!! ACGAGTGCTGTGCTACTTCA+TGG - Chr6:23424019-23424038 None:intergenic 50.0%
!! ATGGGGGTTGATAGGGACTT+GGG + Chr6:23426993-23427012 MsG0680031622.01.T01:intron 50.0%
!! CAATGACGGATAGTGTGGCA+TGG + Chr6:23427378-23427397 MsG0680031622.01.T01:intron 50.0%
!! GACGGAGAAGTGCCATGATT+AGG - Chr6:23422588-23422607 None:intergenic 50.0%
!! GAGTACATGGTAATGGTGGG+AGG - Chr6:23426758-23426777 None:intergenic 50.0%
!! TACATGGTAATGGTGGGAGG+AGG - Chr6:23426755-23426774 None:intergenic 50.0%
!!! CGAGGTTTTGGGTTTGAACC+TGG + Chr6:23422753-23422772 MsG0680031622.01.T01:intron 50.0%
AACTAGGCCTTACGGACCAC+CGG + Chr6:23422818-23422837 MsG0680031622.01.T01:intron 55.0%
CAAGGCGCATCCTATGTTCC+TGG - Chr6:23426831-23426850 None:intergenic 55.0%
CAAGTCCCTATCAACCCCCA+TGG - Chr6:23426994-23427013 None:intergenic 55.0%
CACACACACACACAACTGCG+AGG + Chr6:23422735-23422754 MsG0680031622.01.T01:intron 55.0%
CACCAAGGGAAGACCAGGTA+AGG + Chr6:23424691-23424710 MsG0680031622.01.T01:intron 55.0%
CAGGAACATAGGATGCGCCT+TGG + Chr6:23426829-23426848 MsG0680031622.01.T01:intron 55.0%
GACGGATAGTGTGGCATGGT+CGG + Chr6:23427382-23427401 MsG0680031622.01.T01:intron 55.0%
GAGCAGAGACAAATCCCTCG+AGG - Chr6:23427511-23427530 None:intergenic 55.0%
GGTATGCTTAACCAGTGCCC+CGG + Chr6:23425143-23425162 MsG0680031622.01.T01:intron 55.0%
GTATGCTTAACCAGTGCCCC+GGG + Chr6:23425144-23425163 MsG0680031622.01.T01:intron 55.0%
TAGGATGCGCCTTGGACAGA+AGG + Chr6:23426837-23426856 MsG0680031622.01.T01:CDS 55.0%
TATCCTTAACCAGTGCCCCG+GGG - Chr6:23425022-23425041 None:intergenic 55.0%
TATGCTTAACCAGTGCCCCG+GGG + Chr6:23425145-23425164 MsG0680031622.01.T01:intron 55.0%
TCCAAGCGATGCAGGCTTTC+AGG + Chr6:23424255-23424274 MsG0680031622.01.T01:CDS 55.0%
TCCTGAAAGCCTGCATCGCT+TGG - Chr6:23424259-23424278 None:intergenic 55.0%
! TACTCGCCATGGGGGTTGAT+AGG + Chr6:23426985-23427004 MsG0680031622.01.T01:intron 55.0%
!! ACTCGCCATGGGGGTTGATA+GGG + Chr6:23426986-23427005 MsG0680031622.01.T01:intron 55.0%
!! ATGGTAATGGTGGGAGGAGG+GGG - Chr6:23426752-23426771 None:intergenic 55.0%
!! CATGGGGGTTGATAGGGACT+TGG + Chr6:23426992-23427011 MsG0680031622.01.T01:intron 55.0%
!! CATGGTAATGGTGGGAGGAG+GGG - Chr6:23426753-23426772 None:intergenic 55.0%
AAATGCTAACCGGTGCCCCC+GGG + Chr6:23425003-23425022 MsG0680031622.01.T01:intron 60.0%
ACTAGGCCTTACGGACCACC+GGG + Chr6:23422819-23422838 MsG0680031622.01.T01:intron 60.0%
ATCCTTAACCAGTGCCCCGG+GGG - Chr6:23425021-23425040 None:intergenic 60.0%
ATGCTTAACCAGTGCCCCGG+GGG + Chr6:23425146-23425165 MsG0680031622.01.T01:intron 60.0%
GAAATGCTAACCGGTGCCCC+CGG + Chr6:23425002-23425021 MsG0680031622.01.T01:intron 60.0%
GGCATGGTCGGCAGATGAGT+AGG + Chr6:23427394-23427413 MsG0680031622.01.T01:intron 60.0%
TCGCAGGTTGCGGACCATAG+TGG + Chr6:23425341-23425360 MsG0680031622.01.T01:intron 60.0%
AATGCTAACCGGTGCCCCCG+GGG + Chr6:23425004-23425023 MsG0680031622.01.T01:intron 65.0%
GCGAATCCCGGTGGTCCGTA+AGG - Chr6:23422828-23422847 None:intergenic 65.0%
GTCCTGCTAACCGGTGCCCC+CGG - Chr6:23425165-23425184 None:intergenic 70.0%
TCCTGCTAACCGGTGCCCCC+GGG - Chr6:23425164-23425183 None:intergenic 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + Chr6:23425016-23425035 MsG0680031622.01.T01:intron 70.0%
CCTGCTAACCGGTGCCCCCG+GGG - Chr6:23425163-23425182 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+CGG + Chr6:23425152-23425171 MsG0680031622.01.T01:intron 75.0%
! AACCAGTGCCCCGGGGGCAC+CGG - Chr6:23425171-23425152 None:intergenic 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG + Chr6:23425010-23425029 MsG0680031622.01.T01:intron 80.0%
! AACCGGTGCCCCCGGGGCAC+TGG - Chr6:23425029-23425010 None:intergenic 80.0%
!!! CCCCGGGGGCACCGGTTAGC+AGG + Chr6:23425160-23425179 MsG0680031622.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr6 gene 23422267 23427886 23422267 ID=MsG0680031622.01;Name=MsG0680031622.01
Chr6 mRNA 23422267 23427886 23422267 ID=MsG0680031622.01.T01;Parent=MsG0680031622.01;Name=MsG0680031622.01.T01;_AED=0.53;_eAED=0.53;_QI=85|0.45|0.66|0.83|0.63|0.58|12|147|376
Chr6 exon 23422267 23422435 23422267 ID=MsG0680031622.01.T01:exon:14563;Parent=MsG0680031622.01.T01
Chr6 exon 23422523 23422633 23422523 ID=MsG0680031622.01.T01:exon:14564;Parent=MsG0680031622.01.T01
Chr6 exon 23423619 23423675 23423619 ID=MsG0680031622.01.T01:exon:14565;Parent=MsG0680031622.01.T01
Chr6 exon 23423847 23423879 23423847 ID=MsG0680031622.01.T01:exon:14566;Parent=MsG0680031622.01.T01
Chr6 exon 23424190 23424411 23424190 ID=MsG0680031622.01.T01:exon:14567;Parent=MsG0680031622.01.T01
Chr6 exon 23425797 23425933 23425797 ID=MsG0680031622.01.T01:exon:14568;Parent=MsG0680031622.01.T01
Chr6 exon 23426066 23426164 23426066 ID=MsG0680031622.01.T01:exon:14569;Parent=MsG0680031622.01.T01
Chr6 exon 23426276 23426405 23426276 ID=MsG0680031622.01.T01:exon:14570;Parent=MsG0680031622.01.T01
Chr6 exon 23426488 23426562 23426488 ID=MsG0680031622.01.T01:exon:14571;Parent=MsG0680031622.01.T01
Chr6 exon 23426832 23426877 23426832 ID=MsG0680031622.01.T01:exon:14572;Parent=MsG0680031622.01.T01
Chr6 exon 23427154 23427231 23427154 ID=MsG0680031622.01.T01:exon:14573;Parent=MsG0680031622.01.T01
Chr6 exon 23427681 23427886 23427681 ID=MsG0680031622.01.T01:exon:14574;Parent=MsG0680031622.01.T01
Chr6 five_prime_UTR 23422267 23422351 23422267 ID=MsG0680031622.01.T01:five_prime_utr;Parent=MsG0680031622.01.T01
Chr6 CDS 23422352 23422435 23422352 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23422523 23422633 23422523 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23423619 23423675 23423619 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23423847 23423879 23423847 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23424190 23424411 23424190 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23425797 23425933 23425797 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23426066 23426164 23426066 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23426276 23426405 23426276 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23426488 23426562 23426488 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23426832 23426877 23426832 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23427154 23427231 23427154 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 CDS 23427681 23427739 23427681 ID=MsG0680031622.01.T01:cds;Parent=MsG0680031622.01.T01
Chr6 three_prime_UTR 23427740 23427886 23427740 ID=MsG0680031622.01.T01:three_prime_utr;Parent=MsG0680031622.01.T01
Gene Sequence

>MsG0680031622.01.T01

ATGTTGTGGGTAGACAAGTACCGTCCCAAAACCCTAGACAATGTTCTAGTTCACAACAATACCGCTCAAAATCTCAAAAAATTGGTTTCGGAACATGATTGTCCCCATTTGTTGTTCTATGGTCCTTCAGGTTCTGGCAAGAAAACCCTAATCATGGCACTTCTCCGTCAAATGTTTGGACCTGGTGCTGAAAAGAGAGCCACATTTGATGAGATAAGGCTCGAGAATGTGTTTATAAGTGGTAGCCGATGGGTGAAGGTGGAAAATAGGACATGGAAAGTGGATGCTGGGAGTAGATCGATTGATTTAGAGCTGACAACATTATCAAGTGCCAATCATATTGAAATGACTCCAAGCGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCTAAAAATAGACCTATTGATGCTAAAGGGAAGAAAGGATTTAAAGGTAACAAACTTGTTGTCTTTGTTTTCAACCAATATCTTAGTGCTTCCACCTTGATTGTTGATGTTTTACAGTTCATTGGTAAGAAAGAAGGGATACAACTTCCTTCTGGTTTTGCTGCTCGTATAGCAGAGAAATCAAATCGGAATTTGAGGAGGGCCATATTATCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACTGACAAGCAAACAATTCCTCCAATGGATTGGGAGGAATATATTTCAGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGCTTGTTGTTTCACTTACTTATGTGCTGTGCACCTTTCATCTCCCATGTCATATGCTTTAGGTTGTTTCAAGTTCGTGGAAAGCTGTATGAGCTTCTAATCAATTGCATTCCTCCAGAGATCATTTTGAAGAGGCTGCTTTATGAGCTATTGAGGAAACTTGATGCAGAACTGAAGCATGAAGTCTGCCATTGGGCAGCATATTATGAACATAGGATGCGCCTTGGACAGAAGGCCATTTTTCACATCGAAGGGACTCATCAGTCTAGACGCGTGTTTGGGTATGCCTTGTATCCTAATTCACATGTTCCAAAGCTGCGTCCTTTGAGAACATTTGTGGCCAAGTTTATGAGCATCTACAAATCCTTCCTCATTGCAACATTTGGCTGA
Protein sequence

>MsG0680031622.01.T01

MLWVDKYRPKTLDNVLVHNNTAQNLKKLVSEHDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKRATFDEIRLENVFISGSRWVKVENRTWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDAKGKKGFKGNKLVVFVFNQYLSASTLIVDVLQFIGKKEGIQLPSGFAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTIPPMDWEEYISEIASDIMKEQSPKSLLFHLLMCCAPFISHVICFRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEGTHQSRRVFGYALYPNSHVPKLRPLRTFVAKFMSIYKSFLIATFG*