AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007452.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007452.01.T01 MTR_2g025740 96.624 237 4 1 1 237 1 233 1.13e-167 462
MsG0280007452.01.T01 MTR_4g133060 80.751 213 41 0 24 236 9 221 5.60e-122 346
MsG0280007452.01.T01 MTR_4g133060 83.590 195 32 0 42 236 1 195 9.58e-117 332
MsG0280007452.01.T01 MTR_3g082970 77.273 198 45 0 39 236 28 225 7.95e-114 325
MsG0280007452.01.T01 MTR_4g133060 75.598 209 47 1 24 228 9 217 1.56e-107 309
MsG0280007452.01.T01 MTR_8g097200 67.052 173 57 0 64 236 59 231 7.54e-87 257
MsG0280007452.01.T01 MTR_3g084940 67.429 175 56 1 63 236 52 226 4.73e-84 250
MsG0280007452.01.T01 MTR_7g097270 50.000 190 93 2 46 234 29 217 3.76e-63 196
MsG0280007452.01.T01 MTR_7g097270 48.438 128 64 2 46 172 29 155 4.86e-34 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007452.01.T01 AT3G07880 77.273 198 44 1 39 236 41 237 7.42e-114 326
MsG0280007452.01.T01 AT1G62450 71.429 203 56 1 37 237 21 223 7.26e-98 285
MsG0280007452.01.T01 AT1G12070 69.608 204 60 1 35 236 19 222 3.41e-94 275

Find 83 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGGATTTCCATCTTC+TGG 0.210863 2:+15693518 None:intergenic
AGCACAAATAACAATGATTA+AGG 0.217161 2:+15692084 None:intergenic
GTCAACCATAACATTGTTTC+AGG 0.229464 2:-15693440 MsG0280007452.01.T01:CDS
CAATAACCCATCAACGAAAA+AGG 0.251245 2:+15694622 None:intergenic
TCGTGTGGTGATCCGAAATA+AGG 0.273045 2:+15694826 None:intergenic
CTCATCATTGTTAAGATTAC+CGG 0.289882 2:+15691991 None:intergenic
CAGATTAATGTTCACTTTCC+AGG 0.308843 2:-15693462 MsG0280007452.01.T01:CDS
CAAAACCACTTCTCCTTCAA+TGG 0.315692 2:+15694580 None:intergenic
CTTTCAAACCTCCCTTATTT+CGG 0.317322 2:-15694838 MsG0280007452.01.T01:five_prime_UTR
CCAGATGGTGTTGTCTCTTC+AGG 0.324079 2:+15692982 None:intergenic
AGAAAGGACTGGCAGTAATT+AGG 0.336601 2:-15692157 MsG0280007452.01.T01:exon
ACCAACACTGTGTGGAAAAC+TGG 0.339922 2:-15693407 MsG0280007452.01.T01:CDS
GGGTCCACAATGTACCTTAA+AGG 0.356936 2:-15694353 MsG0280007452.01.T01:CDS
GAAGGAGGTGGTGGTGGTGG+TGG 0.358005 2:-15694463 MsG0280007452.01.T01:CDS
GGATTTCCATCTTCTGGTAT+TGG 0.367712 2:+15693524 None:intergenic
ATGATGAGAGCTTGAGGAGG+TGG 0.368412 2:-15694212 MsG0280007452.01.T01:CDS
CCTGAAGAGACAACACCATC+TGG 0.386766 2:-15692982 MsG0280007452.01.T01:CDS
AGGAAGATGATGATGAAGAT+AGG 0.399631 2:-15694387 MsG0280007452.01.T01:CDS
CTTTGGAAGATTCTACCAAC+TGG 0.405068 2:-15694671 MsG0280007452.01.T01:five_prime_UTR
AAAGTAAACCACAAACCCTT+TGG 0.405134 2:+15693503 None:intergenic
AGGCTCAGAATCTTCACTTC+TGG 0.405375 2:+15693584 None:intergenic
TGTGAGAAATTTAGAAACTC+TGG 0.409824 2:-15693609 MsG0280007452.01.T01:intron
ATGGAAATCCAAAGGGTTTG+TGG 0.414134 2:-15693511 MsG0280007452.01.T01:CDS
GGTATTGGAAGAACTATATC+AGG 0.417145 2:+15693539 None:intergenic
AATGAAGGAGGTGGTGGTGG+TGG 0.419453 2:-15694466 MsG0280007452.01.T01:CDS
AGGGAAAGAGAGAGAGGTGG+AGG 0.428643 2:+15694899 None:intergenic
GGAACAACTTGAAAAGGATA+AGG 0.428665 2:-15694332 MsG0280007452.01.T01:intron
TCTTTGAGTACAACCATTGA+AGG 0.434934 2:-15694593 MsG0280007452.01.T01:five_prime_UTR
AGGTGGAAGGAACAGCTTCT+TGG 0.460032 2:-15694195 MsG0280007452.01.T01:CDS
AGTCTCAGTTTGAGGACTAA+AGG 0.467180 2:+15693020 None:intergenic
GATAGCAGTAAAGAAATGAT+TGG 0.472454 2:-15693045 MsG0280007452.01.T01:CDS
CTTAAAGGAACAACTTGAAA+AGG 0.479070 2:-15694338 MsG0280007452.01.T01:CDS
AGATGCCAAGAAGGCAGAGA+AGG 0.484178 2:+15694797 None:intergenic
TTGTGGTTTACTTTGAAAGA+AGG 0.487138 2:-15693494 MsG0280007452.01.T01:CDS
CGTGTGGTGATCCGAAATAA+GGG 0.492159 2:+15694827 None:intergenic
TTTAGGATGATGAGAGCTTG+AGG 0.494234 2:-15694218 MsG0280007452.01.T01:intron
GATAATGAAGGAGGTGGTGG+TGG 0.500855 2:-15694469 MsG0280007452.01.T01:CDS
ATCTGGGATGTTTGCTAGAG+GGG 0.506001 2:-15692965 MsG0280007452.01.T01:CDS
TGAGACCTGAAACAATGTTA+TGG 0.506555 2:+15693435 None:intergenic
TGTGAAAAGTGATAAGGAAG+AGG 0.508987 2:-15694521 MsG0280007452.01.T01:CDS
AGGAAGAAAAGATGCCAAGA+AGG 0.512847 2:+15694788 None:intergenic
TGATGATAACAAGTGCTACT+TGG 0.512860 2:-15692203 MsG0280007452.01.T01:CDS
TAAGAGAGGGAAAGAGAGAG+AGG 0.513591 2:+15694893 None:intergenic
TTTCTAATCCTGTCTGAGAC+CGG 0.514082 2:-15692010 MsG0280007452.01.T01:three_prime_UTR
GTTCTTCCAATACCAGAAGA+TGG 0.514303 2:-15693530 MsG0280007452.01.T01:CDS
TGAGAGAGAAAGTTTAAGAG+AGG 0.516276 2:+15694879 None:intergenic
GAGAGAGAAAGTTTAAGAGA+GGG 0.518831 2:+15694880 None:intergenic
GAAGATAGGAAGATTGAGTT+GGG 0.520070 2:-15694373 MsG0280007452.01.T01:CDS
GGCATATTCAGCTAGAAGTA+AGG 0.525812 2:-15692944 MsG0280007452.01.T01:intron
TGAAGATAGGAAGATTGAGT+TGG 0.526221 2:-15694374 MsG0280007452.01.T01:CDS
TGAGTGTAAGTCTCAGTTTG+AGG 0.527673 2:+15693012 None:intergenic
TAAGATTACCGGTCTCAGAC+AGG 0.539093 2:+15692002 None:intergenic
ACATATGAATCAATCAATGT+AGG 0.540113 2:+15692112 None:intergenic
GTGTGGAAAACTGGTATCAA+AGG 0.544247 2:-15693398 MsG0280007452.01.T01:intron
GAGAGGGAAAGAGAGAGAGG+TGG 0.549226 2:+15694896 None:intergenic
CCAGAAGATGGAAATCCAAA+GGG 0.550094 2:-15693518 MsG0280007452.01.T01:CDS
GAGTTCTGTTGCTGCTACTG+AGG 0.550601 2:-15694410 MsG0280007452.01.T01:CDS
ACCAGAAGATGGAAATCCAA+AGG 0.565847 2:-15693519 MsG0280007452.01.T01:CDS
CAAGAAGGCAGAGAAGGAAA+AGG 0.566078 2:+15694803 None:intergenic
TACAACCATTGAAGGAGAAG+TGG 0.568479 2:-15694585 MsG0280007452.01.T01:five_prime_UTR
AGTGTTGACATCAATGCTGT+TGG 0.578216 2:-15694171 MsG0280007452.01.T01:CDS
AGTGATAATGAAGGAGGTGG+TGG 0.578607 2:-15694472 MsG0280007452.01.T01:CDS
TATGAATCAATCAATGTAGG+AGG 0.579564 2:+15692115 None:intergenic
CATCTGGGATGTTTGCTAGA+GGG 0.582598 2:-15692966 MsG0280007452.01.T01:CDS
TGTTCCTTTAAGGTACATTG+TGG 0.585755 2:+15694349 None:intergenic
TGATAATGTGAAAAGTGATA+AGG 0.588267 2:-15694527 MsG0280007452.01.T01:CDS
CTGAAGAGACAACACCATCT+GGG 0.589031 2:-15692981 MsG0280007452.01.T01:CDS
AGGATGATGAGAGCTTGAGG+AGG 0.599532 2:-15694215 MsG0280007452.01.T01:CDS
AAACAATGTTATGGTTGACC+TGG 0.602214 2:+15693444 None:intergenic
GTTGACATCAATGCTGTTGG+AGG 0.602320 2:-15694168 MsG0280007452.01.T01:intron
TTTGGAAGATTCTACCAACT+GGG 0.610079 2:-15694670 MsG0280007452.01.T01:five_prime_UTR
TTCTGTTGCTGCTACTGAGG+AGG 0.610284 2:-15694407 MsG0280007452.01.T01:CDS
AGAAACAAGTAAAACACTGA+AGG 0.611286 2:+15692054 None:intergenic
TGAGAGCTTGAGGAGGTGGA+AGG 0.612840 2:-15694208 MsG0280007452.01.T01:CDS
CCATCTGGGATGTTTGCTAG+AGG 0.625157 2:-15692967 MsG0280007452.01.T01:CDS
GTTGAAGAAAGTGATAATGA+AGG 0.638901 2:-15694481 MsG0280007452.01.T01:CDS
CCTCTAGCAAACATCCCAGA+TGG 0.639199 2:+15692967 None:intergenic
GAAAGTGATAATGAAGGAGG+TGG 0.650808 2:-15694475 MsG0280007452.01.T01:CDS
TCAAGTACACCAACACTGTG+TGG 0.658417 2:-15693415 MsG0280007452.01.T01:CDS
GAAGAAAGTGATAATGAAGG+AGG 0.669435 2:-15694478 MsG0280007452.01.T01:CDS
GTAATCTTAACAATGATGAG+AGG 0.672415 2:-15691988 MsG0280007452.01.T01:three_prime_UTR
CAGAGAAGGAAAAGGTCGTG+TGG 0.684242 2:+15694811 None:intergenic
GTGGTGATCCGAAATAAGGG+AGG 0.721116 2:+15694830 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATGTTCTAATAAATT+TGG - Chr2:15694345-15694364 MsG0280007452.01.T01:CDS 10.0%
!! ATATAAACAACATAATTAAA+AGG + Chr2:15693083-15693102 None:intergenic 10.0%
!! ACATTTATTGAATTTATTGA+TGG + Chr2:15694334-15694353 None:intergenic 15.0%
!! CAACAATAATAATATATGTT+CGG + Chr2:15694038-15694057 None:intergenic 15.0%
!!! TTACATATTTTTACTTGTTT+GGG - Chr2:15694261-15694280 MsG0280007452.01.T01:intron 15.0%
!! CGAACATATATTATTATTGT+TGG - Chr2:15694036-15694055 MsG0280007452.01.T01:intron 20.0%
!! TAATTCAAATATCAGAAAAG+TGG + Chr2:15694392-15694411 None:intergenic 20.0%
!! TTAATGATTCAATTAGTACT+TGG + Chr2:15693167-15693186 None:intergenic 20.0%
!!! AAACAGAATAAATGTCATTT+TGG - Chr2:15692916-15692935 MsG0280007452.01.T01:intron 20.0%
!!! AATAAATGTCATTTTGGTTA+TGG - Chr2:15692922-15692941 MsG0280007452.01.T01:intron 20.0%
!!! ATGTTGTTTATATAGTAGAT+AGG - Chr2:15693090-15693109 MsG0280007452.01.T01:intron 20.0%
!!! CTTACATATTTTTACTTGTT+TGG - Chr2:15694260-15694279 MsG0280007452.01.T01:intron 20.0%
!!! TGAATTCTGAGAAAAAATAT+GGG - Chr2:15692287-15692306 MsG0280007452.01.T01:intron 20.0%
!!! TTGAATTCTGAGAAAAAATA+TGG - Chr2:15692286-15692305 MsG0280007452.01.T01:intron 20.0%
!!! TTTGTTTTTGTTGTGATTTT+AGG - Chr2:15692611-15692630 MsG0280007452.01.T01:intron 20.0%
! AATTTCTCACAATAAACCAA+TGG + Chr2:15693228-15693247 None:intergenic 25.0%
! ACATATGAATCAATCAATGT+AGG + Chr2:15694737-15694756 None:intergenic 25.0%
! AGAAAAATGAGATAAAGCAA+AGG + Chr2:15692081-15692100 None:intergenic 25.0%
! AGCACAAATAACAATGATTA+AGG + Chr2:15694765-15694784 None:intergenic 25.0%
! CAATATTATGAATGTTGTGA+AGG - Chr2:15694155-15694174 MsG0280007452.01.T01:intron 25.0%
! TTGAAATTGAGTTATGACAA+AGG - Chr2:15694070-15694089 MsG0280007452.01.T01:intron 25.0%
!! TGATAATGTGAAAAGTGATA+AGG - Chr2:15692319-15692338 MsG0280007452.01.T01:intron 25.0%
!! TTAAGTTGTTTATCCAATCA+GGG - Chr2:15693716-15693735 MsG0280007452.01.T01:intron 25.0%
!!! AAATTTGAGTTTTGCATGTT+TGG - Chr2:15694935-15694954 MsG0280007452.01.T01:five_prime_UTR 25.0%
!!! AATTACTTCTCTGAAATTCT+TGG - Chr2:15694407-15694426 MsG0280007452.01.T01:CDS 25.0%
!!! AATTTGAGTTTTGCATGTTT+GGG - Chr2:15694936-15694955 MsG0280007452.01.T01:five_prime_UTR 25.0%
!!! CATCTTTTATTTAAGGTCTT+AGG - Chr2:15692982-15693001 MsG0280007452.01.T01:CDS 25.0%
!!! TCTGCATCATCTTTTATTTA+AGG - Chr2:15692975-15692994 MsG0280007452.01.T01:CDS 25.0%
!!! TCTGTTTTAGATAATGCTTT+AGG + Chr2:15692903-15692922 None:intergenic 25.0%
!!! TCTTTGAAGATTTTGAATTG+TGG - Chr2:15692876-15692895 MsG0280007452.01.T01:intron 25.0%
AATAACCCATCAACGAAAAA+GGG + Chr2:15692226-15692245 None:intergenic 30.0%
AATATCAGAAAAGTGGTTGA+AGG + Chr2:15694385-15694404 None:intergenic 30.0%
ACATAAACTATTACCCTGAT+TGG + Chr2:15693732-15693751 None:intergenic 30.0%
ACCTCATAATGAAAATCCAT+TGG - Chr2:15693209-15693228 MsG0280007452.01.T01:intron 30.0%
AGAAACAAGTAAAACACTGA+AGG + Chr2:15694795-15694814 None:intergenic 30.0%
ATTGCTTCATTCAAAAGCAA+AGG + Chr2:15694454-15694473 None:intergenic 30.0%
CTCATCATTGTTAAGATTAC+CGG + Chr2:15694858-15694877 None:intergenic 30.0%
CTTAAAGGAACAACTTGAAA+AGG - Chr2:15692508-15692527 MsG0280007452.01.T01:intron 30.0%
GATAGCAGTAAAGAAATGAT+TGG - Chr2:15693801-15693820 MsG0280007452.01.T01:intron 30.0%
GTAAGTGATTATGCGATAAA+CGG - Chr2:15693689-15693708 MsG0280007452.01.T01:intron 30.0%
GTAATCTTAACAATGATGAG+AGG - Chr2:15694858-15694877 MsG0280007452.01.T01:five_prime_UTR 30.0%
GTTTATGTCAAACCATAAAC+TGG - Chr2:15693744-15693763 MsG0280007452.01.T01:intron 30.0%
TATGAATCAATCAATGTAGG+AGG + Chr2:15694734-15694753 None:intergenic 30.0%
TCAACTGTAACAAACAAACA+AGG + Chr2:15693783-15693802 None:intergenic 30.0%
TGGCAAATGAAATTAGTGAA+AGG + Chr2:15694187-15694206 None:intergenic 30.0%
TGTGAGAAATTTAGAAACTC+TGG - Chr2:15693237-15693256 MsG0280007452.01.T01:intron 30.0%
! ATGAAATTAGTGAAAGGTGT+AGG + Chr2:15694181-15694200 None:intergenic 30.0%
! CTACACTTTTGATATCAGAA+AGG - Chr2:15694673-15694692 MsG0280007452.01.T01:five_prime_UTR 30.0%
! GTTAAGTTGTTTATCCAATC+AGG - Chr2:15693715-15693734 MsG0280007452.01.T01:intron 30.0%
! GTTGAAGAAAGTGATAATGA+AGG - Chr2:15692365-15692384 MsG0280007452.01.T01:intron 30.0%
! TTGTGGTTTACTTTGAAAGA+AGG - Chr2:15693352-15693371 MsG0280007452.01.T01:intron 30.0%
! TTTCTTTTCTTACAAACCCA+AGG - Chr2:15692137-15692156 MsG0280007452.01.T01:three_prime_UTR 30.0%
!! ACCAATGGATTTTCATTATG+AGG + Chr2:15693213-15693232 None:intergenic 30.0%
!! AGAACAAGAAAAAAGTACCT+TGG + Chr2:15692157-15692176 None:intergenic 30.0%
!! AGGATTTTGAAGGATGAAAT+TGG - Chr2:15694878-15694897 MsG0280007452.01.T01:five_prime_UTR 30.0%
!! ATTTGAGTTTTGCATGTTTG+GGG - Chr2:15694937-15694956 MsG0280007452.01.T01:five_prime_UTR 30.0%
!! GAACAAGAAAAAAGTACCTT+GGG + Chr2:15692156-15692175 None:intergenic 30.0%
!!! CTTTTCAAGTTGTTCCTTTA+AGG + Chr2:15692510-15692529 None:intergenic 30.0%
!!! GGTACTTTTTTCTTGTTCTT+TGG - Chr2:15692158-15692177 MsG0280007452.01.T01:exon 30.0%
AAAAACAAAAACGACCCAGT+TGG + Chr2:15692193-15692212 None:intergenic 35.0%
AAACAATGTTATGGTTGACC+TGG + Chr2:15693405-15693424 None:intergenic 35.0%
AAAGTAAACCACAAACCCTT+TGG + Chr2:15693346-15693365 None:intergenic 35.0%
AAATATCCTTCTAGTGTTGC+TGG - Chr2:15693052-15693071 MsG0280007452.01.T01:intron 35.0%
ATCAAGAGCTAGTGTATGTT+TGG - Chr2:15693964-15693983 MsG0280007452.01.T01:intron 35.0%
CAATAACCCATCAACGAAAA+AGG + Chr2:15692227-15692246 None:intergenic 35.0%
CAGATTAATGTTCACTTTCC+AGG - Chr2:15693384-15693403 MsG0280007452.01.T01:intron 35.0%
GAAGATAGGAAGATTGAGTT+GGG - Chr2:15692473-15692492 MsG0280007452.01.T01:intron 35.0%
GAGAGAGAAAGTTTAAGAGA+GGG + Chr2:15691969-15691988 None:intergenic 35.0%
GGAACAACTTGAAAAGGATA+AGG - Chr2:15692514-15692533 MsG0280007452.01.T01:intron 35.0%
GTCAACCATAACATTGTTTC+AGG - Chr2:15693406-15693425 MsG0280007452.01.T01:CDS 35.0%
TAGCTCTTGATTCATCGTTT+AGG + Chr2:15693955-15693974 None:intergenic 35.0%
TCTTTGAGTACAACCATTGA+AGG - Chr2:15692253-15692272 MsG0280007452.01.T01:intron 35.0%
TGAAGATAGGAAGATTGAGT+TGG - Chr2:15692472-15692491 MsG0280007452.01.T01:intron 35.0%
TGAGACCTGAAACAATGTTA+TGG + Chr2:15693414-15693433 None:intergenic 35.0%
TGAGAGAGAAAGTTTAAGAG+AGG + Chr2:15691970-15691989 None:intergenic 35.0%
TGAGTTTGACAAAACCATAG+TGG + Chr2:15694007-15694026 None:intergenic 35.0%
TGTGAAAAGTGATAAGGAAG+AGG - Chr2:15692325-15692344 MsG0280007452.01.T01:intron 35.0%
TTGAATGAAGCAATTGACAG+AGG - Chr2:15694460-15694479 MsG0280007452.01.T01:CDS 35.0%
TTTGGAAGATTCTACCAACT+GGG - Chr2:15692176-15692195 MsG0280007452.01.T01:CDS 35.0%
! AGGAAGATGATGATGAAGAT+AGG - Chr2:15692459-15692478 MsG0280007452.01.T01:intron 35.0%
! CAATGATGAGAGGATTTTGA+AGG - Chr2:15694868-15694887 MsG0280007452.01.T01:five_prime_UTR 35.0%
! CTTTCAAACCTCCCTTATTT+CGG - Chr2:15692008-15692027 MsG0280007452.01.T01:three_prime_UTR 35.0%
! CTTTTGATATCAGAAAGGAC+TGG - Chr2:15694678-15694697 MsG0280007452.01.T01:five_prime_UTR 35.0%
! GAAGAAAGTGATAATGAAGG+AGG - Chr2:15692368-15692387 MsG0280007452.01.T01:intron 35.0%
! GCATTTTCTGCATTGTTTGT+TGG - Chr2:15692813-15692832 MsG0280007452.01.T01:intron 35.0%
! GGTATTGGAAGAACTATATC+AGG + Chr2:15693310-15693329 None:intergenic 35.0%
! TATCAGCAGCTTTTATTGCA+AGG + Chr2:15693285-15693304 None:intergenic 35.0%
! TGATGATAACAAGTGCTACT+TGG - Chr2:15694643-15694662 MsG0280007452.01.T01:five_prime_UTR 35.0%
! TTTTCTTAACTCATAGCAGC+TGG + Chr2:15694207-15694226 None:intergenic 35.0%
!! ATTTGTCCCTTTTTCGTTGA+TGG - Chr2:15692217-15692236 MsG0280007452.01.T01:intron 35.0%
!! TGTTCCTTTAAGGTACATTG+TGG + Chr2:15692500-15692519 None:intergenic 35.0%
!! TTTGTCCCTTTTTCGTTGAT+GGG - Chr2:15692218-15692237 MsG0280007452.01.T01:intron 35.0%
ACAAACAAGGCTCAACAATG+AGG + Chr2:15693770-15693789 None:intergenic 40.0%
ACCAGAAGATGGAAATCCAA+AGG - Chr2:15693327-15693346 MsG0280007452.01.T01:intron 40.0%
AGGAAGAAAAGATGCCAAGA+AGG + Chr2:15692061-15692080 None:intergenic 40.0%
AGTCTCAGTTTGAGGACTAA+AGG + Chr2:15693829-15693848 None:intergenic 40.0%
ATGGAAATCCAAAGGGTTTG+TGG - Chr2:15693335-15693354 MsG0280007452.01.T01:intron 40.0%
CAAAACCACTTCTCCTTCAA+TGG + Chr2:15692269-15692288 None:intergenic 40.0%
CCAGAAGATGGAAATCCAAA+GGG - Chr2:15693328-15693347 MsG0280007452.01.T01:intron 40.0%
GAAAAACCAGCAACACTAGA+AGG + Chr2:15693061-15693080 None:intergenic 40.0%
GAGCTAGTGTATGTTTGGAT+TGG - Chr2:15693969-15693988 MsG0280007452.01.T01:intron 40.0%
GGATTTCCATCTTCTGGTAT+TGG + Chr2:15693325-15693344 None:intergenic 40.0%
GGCATATTCAGCTAGAAGTA+AGG - Chr2:15693902-15693921 MsG0280007452.01.T01:intron 40.0%
GTGTGGAAAACTGGTATCAA+AGG - Chr2:15693448-15693467 MsG0280007452.01.T01:CDS 40.0%
GTTCTTCCAATACCAGAAGA+TGG - Chr2:15693316-15693335 MsG0280007452.01.T01:intron 40.0%
TACAACCATTGAAGGAGAAG+TGG - Chr2:15692261-15692280 MsG0280007452.01.T01:intron 40.0%
TCAACAATGAGGCCAGTTTA+TGG + Chr2:15693759-15693778 None:intergenic 40.0%
TCATATCAATCCCTCTCTCA+GGG - Chr2:15693475-15693494 MsG0280007452.01.T01:CDS 40.0%
TGAGTGTAAGTCTCAGTTTG+AGG + Chr2:15693837-15693856 None:intergenic 40.0%
TGTCTGTGTCAATGCTTCAT+AGG + Chr2:15694525-15694544 None:intergenic 40.0%
! AGAAAGGACTGGCAGTAATT+AGG - Chr2:15694689-15694708 MsG0280007452.01.T01:five_prime_UTR 40.0%
! CTAGTGTATGTTTGGATTGG+CGG - Chr2:15693972-15693991 MsG0280007452.01.T01:intron 40.0%
! CTTTGGAAGATTCTACCAAC+TGG - Chr2:15692175-15692194 MsG0280007452.01.T01:CDS 40.0%
! GAAAGTGATAATGAAGGAGG+TGG - Chr2:15692371-15692390 MsG0280007452.01.T01:intron 40.0%
! TTTAGGATGATGAGAGCTTG+AGG - Chr2:15692628-15692647 MsG0280007452.01.T01:intron 40.0%
! TTTCTAATCCTGTCTGAGAC+CGG - Chr2:15694836-15694855 MsG0280007452.01.T01:five_prime_UTR 40.0%
!! AGTGTTGACATCAATGCTGT+TGG - Chr2:15692675-15692694 MsG0280007452.01.T01:intron 40.0%
ACCAACACTGTGTGGAAAAC+TGG - Chr2:15693439-15693458 MsG0280007452.01.T01:CDS 45.0%
AGGCTCAGAATCTTCACTTC+TGG + Chr2:15693265-15693284 None:intergenic 45.0%
ATCAAAACATGCCCTGAGAG+AGG + Chr2:15693489-15693508 None:intergenic 45.0%
CAAGAAGGCAGAGAAGGAAA+AGG + Chr2:15692046-15692065 None:intergenic 45.0%
CCCTTTGGATTTCCATCTTC+TGG + Chr2:15693331-15693350 None:intergenic 45.0%
CGTGTGGTGATCCGAAATAA+GGG + Chr2:15692022-15692041 None:intergenic 45.0%
CTCATATCAATCCCTCTCTC+AGG - Chr2:15693474-15693493 MsG0280007452.01.T01:CDS 45.0%
CTGAAGAGACAACACCATCT+GGG - Chr2:15693865-15693884 MsG0280007452.01.T01:intron 45.0%
GGGTCCACAATGTACCTTAA+AGG - Chr2:15692493-15692512 MsG0280007452.01.T01:intron 45.0%
GTTGACATCAATGCTGTTGG+AGG - Chr2:15692678-15692697 MsG0280007452.01.T01:intron 45.0%
TAAGAGAGGGAAAGAGAGAG+AGG + Chr2:15691956-15691975 None:intergenic 45.0%
TAAGATTACCGGTCTCAGAC+AGG + Chr2:15694847-15694866 None:intergenic 45.0%
TCAAAACATGCCCTGAGAGA+GGG + Chr2:15693488-15693507 None:intergenic 45.0%
TCAAGTACACCAACACTGTG+TGG - Chr2:15693431-15693450 MsG0280007452.01.T01:CDS 45.0%
TCGTGTGGTGATCCGAAATA+AGG + Chr2:15692023-15692042 None:intergenic 45.0%
! ACCAGTTTTCCACACAGTGT+TGG + Chr2:15693443-15693462 None:intergenic 45.0%
! AGTGATAATGAAGGAGGTGG+TGG - Chr2:15692374-15692393 MsG0280007452.01.T01:intron 45.0%
! ATCTGGGATGTTTGCTAGAG+GGG - Chr2:15693881-15693900 MsG0280007452.01.T01:intron 45.0%
! CATCTGGGATGTTTGCTAGA+GGG - Chr2:15693880-15693899 MsG0280007452.01.T01:intron 45.0%
! CTTTTCCTTCTCTGCCTTCT+TGG - Chr2:15692044-15692063 MsG0280007452.01.T01:three_prime_UTR 45.0%
!! AGTTTTGCATGTTTGGGGTG+CGG - Chr2:15694942-15694961 MsG0280007452.01.T01:five_prime_UTR 45.0%
!! GTTTGGATTGGCGGTGTATT+TGG - Chr2:15693981-15694000 MsG0280007452.01.T01:intron 45.0%
AAGAGTTAGTGAGCCTGAGC+TGG - Chr2:15694226-15694245 MsG0280007452.01.T01:intron 50.0%
AGATGCCAAGAAGGCAGAGA+AGG + Chr2:15692052-15692071 None:intergenic 50.0%
AGCAGATAAGAGTCCAGCTC+AGG + Chr2:15694242-15694261 None:intergenic 50.0%
AGGATGATGAGAGCTTGAGG+AGG - Chr2:15692631-15692650 MsG0280007452.01.T01:intron 50.0%
AGGTGGAAGGAACAGCTTCT+TGG - Chr2:15692651-15692670 MsG0280007452.01.T01:intron 50.0%
ATGATGAGAGCTTGAGGAGG+TGG - Chr2:15692634-15692653 MsG0280007452.01.T01:intron 50.0%
CAGAGAAGGAAAAGGTCGTG+TGG + Chr2:15692038-15692057 None:intergenic 50.0%
CATTGACACAGACACGACAC+TGG - Chr2:15694531-15694550 MsG0280007452.01.T01:CDS 50.0%
CCTCTAGCAAACATCCCAGA+TGG + Chr2:15693882-15693901 None:intergenic 50.0%
CCTGAAGAGACAACACCATC+TGG - Chr2:15693864-15693883 MsG0280007452.01.T01:intron 50.0%
GAGTTCTGTTGCTGCTACTG+AGG - Chr2:15692436-15692455 MsG0280007452.01.T01:intron 50.0%
GTGGTGATCCGAAATAAGGG+AGG + Chr2:15692019-15692038 None:intergenic 50.0%
TTCTGTTGCTGCTACTGAGG+AGG - Chr2:15692439-15692458 MsG0280007452.01.T01:intron 50.0%
! CCATCTGGGATGTTTGCTAG+AGG - Chr2:15693879-15693898 MsG0280007452.01.T01:intron 50.0%
! GATAATGAAGGAGGTGGTGG+TGG - Chr2:15692377-15692396 MsG0280007452.01.T01:intron 50.0%
!! CCAGATGGTGTTGTCTCTTC+AGG + Chr2:15693867-15693886 None:intergenic 50.0%
AGGGAAAGAGAGAGAGGTGG+AGG + Chr2:15691950-15691969 None:intergenic 55.0%
GAGAGGGAAAGAGAGAGAGG+TGG + Chr2:15691953-15691972 None:intergenic 55.0%
GGCGGTGTATTTGGCCACTA+TGG - Chr2:15693990-15694009 MsG0280007452.01.T01:intron 55.0%
TGAGAGCTTGAGGAGGTGGA+AGG - Chr2:15692638-15692657 MsG0280007452.01.T01:intron 55.0%
!! AATGAAGGAGGTGGTGGTGG+TGG - Chr2:15692380-15692399 MsG0280007452.01.T01:intron 55.0%
!! AGGTGGTGGTGGTGGTGGTG+GGG - Chr2:15692388-15692407 MsG0280007452.01.T01:intron 65.0%
!! GAAGGAGGTGGTGGTGGTGG+TGG - Chr2:15692383-15692402 MsG0280007452.01.T01:intron 65.0%
!! GAGGTGGTGGTGGTGGTGGT+GGG - Chr2:15692387-15692406 MsG0280007452.01.T01:intron 65.0%
!! GGAGGTGGTGGTGGTGGTGG+TGG - Chr2:15692386-15692405 MsG0280007452.01.T01:intron 70.0%
!! GGTGGTGGTGGTGGTGGTGG+GGG - Chr2:15692389-15692408 MsG0280007452.01.T01:intron 70.0%
!! GGTGGTGGTGGTGGTGGGGG+TGG - Chr2:15692392-15692411 MsG0280007452.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 15691906 15694962 15691906 ID=MsG0280007452.01;Name=MsG0280007452.01
Chr2 mRNA 15691906 15694962 15691906 ID=MsG0280007452.01.T01;Parent=MsG0280007452.01;Name=MsG0280007452.01.T01;_AED=0.49;_eAED=0.49;_QI=399|1|1|1|1|1|5|256|237
Chr2 exon 15691906 15692233 15691906 ID=MsG0280007452.01.T01:exon:3414;Parent=MsG0280007452.01.T01
Chr2 exon 15692945 15693069 15692945 ID=MsG0280007452.01.T01:exon:3413;Parent=MsG0280007452.01.T01
Chr2 exon 15693399 15693617 15693399 ID=MsG0280007452.01.T01:exon:3412;Parent=MsG0280007452.01.T01
Chr2 exon 15694169 15694235 15694169 ID=MsG0280007452.01.T01:exon:3411;Parent=MsG0280007452.01.T01
Chr2 exon 15694333 15694962 15694333 ID=MsG0280007452.01.T01:exon:3410;Parent=MsG0280007452.01.T01
Chr2 five_prime_UTR 15694564 15694962 15694564 ID=MsG0280007452.01.T01:five_prime_utr;Parent=MsG0280007452.01.T01
Chr2 CDS 15694333 15694563 15694333 ID=MsG0280007452.01.T01:cds;Parent=MsG0280007452.01.T01
Chr2 CDS 15694169 15694235 15694169 ID=MsG0280007452.01.T01:cds;Parent=MsG0280007452.01.T01
Chr2 CDS 15693399 15693617 15693399 ID=MsG0280007452.01.T01:cds;Parent=MsG0280007452.01.T01
Chr2 CDS 15692945 15693069 15692945 ID=MsG0280007452.01.T01:cds;Parent=MsG0280007452.01.T01
Chr2 CDS 15692162 15692233 15692162 ID=MsG0280007452.01.T01:cds;Parent=MsG0280007452.01.T01
Chr2 three_prime_UTR 15691906 15692161 15691906 ID=MsG0280007452.01.T01:three_prime_utr;Parent=MsG0280007452.01.T01
Gene Sequence

>MsG0280007452.01.T01

ATGGGTCTTGATGATGATAATGTGAAAAGTGATAAGGAAGAGGAGAAGAGTTCTCGTGTTGTTGAAGAAAGTGATAATGAAGGAGGTGGTGGTGGTGGTGGTGGGGGTGGCGATAGCAGATACATGAGTGAGAGTTCTGTTGCTGCTACTGAGGAGGAAGATGATGATGAAGATAGGAAGATTGAGTTGGGTCCACAATGTACCTTAAAGGAACAACTTGAAAAGGATAAGGATGATGAGAGCTTGAGGAGGTGGAAGGAACAGCTTCTTGGAAGTGTTGACATCAATGCTGTTGGAGAAACTCTGGAGCCAGAAGTGAAGATTCTGAGCCTTGCAATAAAAGCTGCTGATAGACCTGATATAGTTCTTCCAATACCAGAAGATGGAAATCCAAAGGGTTTGTGGTTTACTTTGAAAGAAGGTAGCAAATACAGATTAATGTTCACTTTCCAGGTCAACCATAACATTGTTTCAGGTCTCAAGTACACCAACACTGTGTGGAAAACTGGTATCAAAGTTGATAGCAGTAAAGAAATGATTGGAACCTTTAGTCCTCAAACTGAGACTTACACTCATGAGATGCCTGAAGAGACAACACCATCTGGGATGTTTGCTAGAGGGGCATATTCAGCTAGAAGTAAGTTTGTTGATGATGATAACAAGTGCTACTTGGAGATCAACTACACTTTTGATATCAGAAAGGACTGGCAGTAA

Protein sequence

>MsG0280007452.01.T01

MGLDDDNVKSDKEEEKSSRVVEESDNEGGGGGGGGGGDSRYMSESSVAATEEEDDDEDRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDINAVGETLEPEVKILSLAIKAADRPDIVLPIPEDGNPKGLWFTLKEGSKYRLMFTFQVNHNIVSGLKYTNTVWKTGIKVDSSKEMIGTFSPQTETYTHEMPEETTPSGMFARGAYSARSKFVDDDNKCYLEINYTFDIRKDWQ*