AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040926.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040926.01.T01 MTR_7g101170 70.714 140 3 1 71 210 9 110 3.10e-58 179
MsG0780040926.01.T01 MTR_1g064540 59.712 139 18 1 71 209 11 111 4.39e-43 140
MsG0780040926.01.T01 MTR_1g064540 76.136 88 21 0 123 210 3 90 3.67e-38 127
MsG0780040926.01.T01 MTR_7g007770 41.007 139 44 1 71 209 50 150 1.87e-25 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040926.01.T01 AT4G23710 51.049 143 32 1 68 210 2 106 2.48e-36 123
MsG0780040926.01.T01 AT3G01390 54.676 139 25 1 72 210 10 110 3.20e-29 105
MsG0780040926.01.T01 AT3G01390 54.676 139 25 1 72 210 10 110 3.20e-29 105
MsG0780040926.01.T01 AT3G01390 54.676 139 25 1 72 210 10 110 3.20e-29 105
MsG0780040926.01.T01 AT3G01390 54.676 139 25 1 72 210 10 110 3.20e-29 105
MsG0780040926.01.T01 AT4G25950 39.130 138 44 2 71 208 9 106 2.33e-22 87.8

Find 60 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCAAGATTGGGTATAAT+TGG 0.227416 7:+84341644 None:intergenic
ACCGAGGCTAGTAGAATTTC+GGG 0.229288 7:-84338985 MsG0780040926.01.T01:CDS
CTTTAACTTTCACATGAAAC+TGG 0.262930 7:-84339498 MsG0780040926.01.T01:CDS
GACCGAGGCTAGTAGAATTT+CGG 0.295846 7:-84338986 MsG0780040926.01.T01:CDS
CACTAAACATCGAGCTCATT+TGG 0.305668 7:-84339207 MsG0780040926.01.T01:CDS
TAGACTTCTTGGTGATATAT+TGG 0.313746 7:-84338916 MsG0780040926.01.T01:three_prime_UTR
TTCACATGAAACTGGGCTAT+TGG 0.324143 7:-84339490 MsG0780040926.01.T01:CDS
TTATTGATCACTCTAGATTC+TGG 0.327174 7:-84338855 MsG0780040926.01.T01:three_prime_UTR
AAGGGGAATTCAACAATTAT+TGG 0.327326 7:-84339687 MsG0780040926.01.T01:CDS
TGCAGATAAGATTCTTGTTT+AGG 0.332158 7:-84338832 MsG0780040926.01.T01:three_prime_UTR
TGTATTTCTCCAGGAGGTTC+AGG 0.334806 7:-84341732 MsG0780040926.01.T01:CDS
GCAAGGTAGGAACAACATTA+TGG 0.374106 7:-84341777 MsG0780040926.01.T01:CDS
CCGTGAAGAACTAGACTTCT+TGG 0.375885 7:-84338927 MsG0780040926.01.T01:exon
ATACAGAGCAGTGGAGATTC+TGG 0.378837 7:-84339063 MsG0780040926.01.T01:intron
GAATTCCCCTTGACTGTTGT+TGG 0.380721 7:+84339699 None:intergenic
CTTGTTTAGGTTATGATGCT+TGG 0.386475 7:-84338819 MsG0780040926.01.T01:three_prime_UTR
GGGGTTTACCCAAGCAAGAT+TGG 0.388099 7:+84341634 None:intergenic
CTGAAATAATGATCTATGAA+TGG 0.407451 7:+84338680 None:intergenic
AGCCAAAGAAGAGGCTGAAA+AGG 0.415151 7:-84339234 MsG0780040926.01.T01:CDS
ATTGGTCTTATGATGGGAAT+GGG 0.421021 7:-84339472 MsG0780040926.01.T01:CDS
AAAGAATAAACCATTCATTC+CGG 0.425856 7:+84338642 None:intergenic
CAATTATACCCAATCTTGCT+TGG 0.426514 7:-84341643 MsG0780040926.01.T01:CDS
GCTTATCTCCATCAAAGATC+TGG 0.441010 7:+84341666 None:intergenic
CTGGGCTATTGGTCTTATGA+TGG 0.447951 7:-84339479 MsG0780040926.01.T01:CDS
ACTCTCCATACCTTTGGTCT+TGG 0.455944 7:+84341701 None:intergenic
TATTGGTCTTATGATGGGAA+TGG 0.457256 7:-84339473 MsG0780040926.01.T01:CDS
TGAAATAATGATCTATGAAT+GGG 0.458332 7:+84338681 None:intergenic
CCAAGAAGTCTAGTTCTTCA+CGG 0.458780 7:+84338927 None:intergenic
GATTTAGAACCTGAACCTCC+TGG 0.465670 7:+84341723 None:intergenic
GGGTTTACCCAAGCAAGATT+GGG 0.473088 7:+84341635 None:intergenic
ACACCAACTCTCCATACCTT+TGG 0.474267 7:+84341695 None:intergenic
AATTATACCCAATCTTGCTT+GGG 0.475088 7:-84341642 MsG0780040926.01.T01:intron
TTGAATAATGCCGGAATGAA+TGG 0.483249 7:-84338652 MsG0780040926.01.T01:three_prime_UTR
CCCCGAAATTCTACTAGCCT+CGG 0.490166 7:+84338984 None:intergenic
TAGCCTCGGTCTTCAGCTGA+TGG 0.496170 7:+84338998 None:intergenic
ATGTATCGCCGTTTCAAAAG+AGG 0.498633 7:-84338722 MsG0780040926.01.T01:three_prime_UTR
GTGGGCAACCAGATCTTTGA+TGG 0.499414 7:-84341674 MsG0780040926.01.T01:CDS
CGAGGAACTTGTATTTCTCC+AGG 0.503331 7:-84341741 MsG0780040926.01.T01:CDS
TCAGTTGTATTGAATAATGC+CGG 0.507531 7:-84338661 MsG0780040926.01.T01:three_prime_UTR
TAAATCCAAGACCAAAGGTA+TGG 0.523527 7:-84341706 MsG0780040926.01.T01:CDS
TGATTAAGTATAGGCAAGGT+AGG 0.529990 7:-84341790 MsG0780040926.01.T01:CDS
AGACCAAAGGTATGGAGAGT+TGG 0.538750 7:-84341698 MsG0780040926.01.T01:CDS
TGGGCTATTGGTCTTATGAT+GGG 0.554423 7:-84339478 MsG0780040926.01.T01:CDS
TGGCATCCAACAACAGTCAA+GGG 0.557509 7:-84339705 MsG0780040926.01.T01:CDS
CATGTGATTAAGTATAGGCA+AGG 0.581295 7:-84341794 MsG0780040926.01.T01:CDS
AAAGGTATGGAGAGTTGGTG+TGG 0.586558 7:-84341693 MsG0780040926.01.T01:CDS
ATGGCATCCAACAACAGTCA+AGG 0.595540 7:-84339706 MsG0780040926.01.T01:CDS
TTTAACTTTCACATGAAACT+GGG 0.600306 7:-84339497 MsG0780040926.01.T01:CDS
AAGGTATGGAGAGTTGGTGT+GGG 0.616942 7:-84341692 MsG0780040926.01.T01:CDS
AAGTTAAAGATAACACAAGA+AGG 0.621451 7:+84339512 None:intergenic
GGTTCTAAATCCAAGACCAA+AGG 0.623336 7:-84341711 MsG0780040926.01.T01:CDS
GATCCATCAGCTGAAGACCG+AGG 0.646369 7:-84339001 MsG0780040926.01.T01:CDS
GGCATCCAACAACAGTCAAG+GGG 0.651011 7:-84339704 MsG0780040926.01.T01:CDS
CTTCAATGAATACAGAGCAG+TGG 0.651983 7:-84339072 MsG0780040926.01.T01:intron
GTTGAAACAAGCCAAAGAAG+AGG 0.654824 7:-84339243 MsG0780040926.01.T01:CDS
CGAGGCTAGTAGAATTTCGG+GGG 0.666069 7:-84338983 MsG0780040926.01.T01:CDS
GGAACTTGTATTTCTCCAGG+AGG 0.667837 7:-84341738 MsG0780040926.01.T01:CDS
CCGAGGCTAGTAGAATTTCG+GGG 0.697212 7:-84338984 MsG0780040926.01.T01:CDS
CTGCTGAACAAGAAGCACAG+CGG 0.743446 7:-84339664 MsG0780040926.01.T01:CDS
TATGGCAAGCTATTCAAACG+AGG 0.756904 7:-84341759 MsG0780040926.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTTGTCAATAA+TGG - Chr7:84339442-84339461 MsG0780040926.01.T01:intron 10.0%
!!! TTTTTTTTCTAACAAAAAAA+AGG - Chr7:84339410-84339429 MsG0780040926.01.T01:intron 10.0%
!! AAAACAGTATAATTAAAAAG+TGG + Chr7:84341082-84341101 None:intergenic 15.0%
!! AAACAGTATAATTAAAAAGT+GGG + Chr7:84341081-84341100 None:intergenic 15.0%
!!! GAATTATCAATTTTATAGAT+AGG - Chr7:84340195-84340214 MsG0780040926.01.T01:intron 15.0%
!!! TAATGAATTTTGAATAATGT+TGG + Chr7:84341671-84341690 None:intergenic 15.0%
!! AAATAAATGCCTTTATTATC+TGG - Chr7:84339327-84339346 MsG0780040926.01.T01:intron 20.0%
!! AAATTAATCATCAAACTGTA+GGG + Chr7:84340258-84340277 None:intergenic 20.0%
!! AAATTAGACAAATAATCCAT+TGG + Chr7:84340559-84340578 None:intergenic 20.0%
!! AATAAATGCCTTTATTATCT+GGG - Chr7:84339328-84339347 MsG0780040926.01.T01:intron 20.0%
!! AATTAGACAAATAATCCATT+GGG + Chr7:84340558-84340577 None:intergenic 20.0%
!! ACTACTTCTATTAAATTTGA+TGG - Chr7:84340045-84340064 MsG0780040926.01.T01:intron 20.0%
!! ATTAAATTTGATGGAATTGA+TGG - Chr7:84340054-84340073 MsG0780040926.01.T01:intron 20.0%
!! GAAATGAAGGAAATAATTAT+TGG + Chr7:84339668-84339687 None:intergenic 20.0%
!! GAGAAATAAAAAATGAAGAT+TGG + Chr7:84340840-84340859 None:intergenic 20.0%
!! TGAAATAATGATCTATGAAT+GGG + Chr7:84341769-84341788 None:intergenic 20.0%
!!! AAACTTATTTTATCACAGAA+TGG - Chr7:84340722-84340741 MsG0780040926.01.T01:intron 20.0%
!!! AATCTTAACAATTTTTTTGC+AGG + Chr7:84340497-84340516 None:intergenic 20.0%
!!! ATTTTCATGTGATTAAGTAT+AGG - Chr7:84338648-84338667 MsG0780040926.01.T01:three_prime_UTR 20.0%
!!! GTCATTTTCTTATAAAGTAA+GGG - Chr7:84339618-84339637 MsG0780040926.01.T01:intron 20.0%
!!! TATCAATTTTATAGATAGGT+TGG - Chr7:84340199-84340218 MsG0780040926.01.T01:intron 20.0%
!!! TCATTTTTTTCTTTTCTTGA+GGG - Chr7:84339721-84339740 MsG0780040926.01.T01:intron 20.0%
!!! TGTCATTTTCTTATAAAGTA+AGG - Chr7:84339617-84339636 MsG0780040926.01.T01:intron 20.0%
!!! TTTTGAATAATGTTGGATAT+TGG + Chr7:84341664-84341683 None:intergenic 20.0%
! AAAGAATAAACCATTCATTC+CGG + Chr7:84341808-84341827 None:intergenic 25.0%
! AACAATCTGCTAACATAAAA+TGG + Chr7:84340901-84340920 None:intergenic 25.0%
! AACTAAATCAACCAATACAA+CGG - Chr7:84340160-84340179 MsG0780040926.01.T01:intron 25.0%
! AAGCTTATAATGAGATAGAA+CGG + Chr7:84341346-84341365 None:intergenic 25.0%
! AAGTTAAAGATAACACAAGA+AGG + Chr7:84340938-84340957 None:intergenic 25.0%
! AATTAATCATCAAACTGTAG+GGG + Chr7:84340257-84340276 None:intergenic 25.0%
! AGATCATGAATATCAATGAA+AGG - Chr7:84338989-84339008 MsG0780040926.01.T01:CDS 25.0%
! ATTAAACTATTACAGCATGA+TGG - Chr7:84340089-84340108 MsG0780040926.01.T01:intron 25.0%
! ATTCAGCATAATTACATAAC+TGG + Chr7:84341126-84341145 None:intergenic 25.0%
! CAAATTAATCATCAAACTGT+AGG + Chr7:84340259-84340278 None:intergenic 25.0%
! CTGAAATAATGATCTATGAA+TGG + Chr7:84341770-84341789 None:intergenic 25.0%
! CTTTGATTATGATTACTTTC+TGG - Chr7:84340673-84340692 MsG0780040926.01.T01:intron 25.0%
! TACTGTTAGAAAAATATGCT+AGG - Chr7:84341182-84341201 MsG0780040926.01.T01:intron 25.0%
! TTTGTTCTATGATATATACG+AGG + Chr7:84341019-84341038 None:intergenic 25.0%
!! AAAAAAATGAGTATCGCTTT+AGG + Chr7:84339711-84339730 None:intergenic 25.0%
!! CTACAGTTTGATGATTAATT+TGG - Chr7:84340257-84340276 MsG0780040926.01.T01:intron 25.0%
!! TGATGATTAATTTGGTGATT+TGG - Chr7:84340265-84340284 MsG0780040926.01.T01:intron 25.0%
!! TTTAACTTTCACATGAAACT+GGG - Chr7:84340950-84340969 MsG0780040926.01.T01:intron 25.0%
!!! AATAAAGGCATTTATTTTGC+AGG + Chr7:84339324-84339343 None:intergenic 25.0%
!!! CTCATTTTTTTCTTTTCTTG+AGG - Chr7:84339720-84339739 MsG0780040926.01.T01:intron 25.0%
!!! TACCTTTCGAGTTTTAAATT+CGG + Chr7:84339791-84339810 None:intergenic 25.0%
!!! TTTTCAAAACAAAGTATCAG+CGG - Chr7:84341270-84341289 MsG0780040926.01.T01:intron 25.0%
AAAAAAATGTCCTACAAGAG+GGG + Chr7:84339095-84339114 None:intergenic 30.0%
AAATTGTTCCAGATCAACTA+AGG + Chr7:84340137-84340156 None:intergenic 30.0%
AAGGGGAATTCAACAATTAT+TGG - Chr7:84340760-84340779 MsG0780040926.01.T01:intron 30.0%
AATTATACCCAATCTTGCTT+GGG - Chr7:84338805-84338824 MsG0780040926.01.T01:three_prime_UTR 30.0%
AATTTGATGGAATTGATGGA+AGG - Chr7:84340058-84340077 MsG0780040926.01.T01:intron 30.0%
ACACACAGATTAAGAAATGA+AGG + Chr7:84339681-84339700 None:intergenic 30.0%
ACTATAGAAGATGTGTTATC+TGG + Chr7:84338854-84338873 None:intergenic 30.0%
AGCATAATTACATAACTGGT+TGG + Chr7:84341122-84341141 None:intergenic 30.0%
ATAATTAAAAAGTGGGAGGA+TGG + Chr7:84341074-84341093 None:intergenic 30.0%
ATTGTGAATGCTGCAAAAAA+TGG - Chr7:84340806-84340825 MsG0780040926.01.T01:intron 30.0%
CAAAAAAATGTCCTACAAGA+GGG + Chr7:84339096-84339115 None:intergenic 30.0%
CAAAAGCTAAATGCAAATTG+AGG + Chr7:84339882-84339901 None:intergenic 30.0%
CAGTATAATTAAAAAGTGGG+AGG + Chr7:84341078-84341097 None:intergenic 30.0%
CGCTTAAAATTCGAAGAAAA+TGG + Chr7:84339855-84339874 None:intergenic 30.0%
GATGATATCATAAGCTTCTA+GGG - Chr7:84338900-84338919 MsG0780040926.01.T01:three_prime_UTR 30.0%
GTAAACCCCATTCTTATTAT+GGG - Chr7:84338827-84338846 MsG0780040926.01.T01:three_prime_UTR 30.0%
GTTGTTCAGAACATCTTTAA+CGG - Chr7:84338958-84338977 MsG0780040926.01.T01:CDS 30.0%
TAATTAAAAAGTGGGAGGAT+GGG + Chr7:84341073-84341092 None:intergenic 30.0%
TCAGTTGTATTGAATAATGC+CGG - Chr7:84341786-84341805 MsG0780040926.01.T01:CDS 30.0%
TGATGATATCATAAGCTTCT+AGG - Chr7:84338899-84338918 MsG0780040926.01.T01:three_prime_UTR 30.0%
TTATTGATCACTCTAGATTC+TGG - Chr7:84341592-84341611 MsG0780040926.01.T01:intron 30.0%
! AAGATGAACGCATAATTTGT+TGG - Chr7:84339189-84339208 MsG0780040926.01.T01:CDS 30.0%
! ACAACTCGCAATTTTATATG+AGG + Chr7:84339357-84339376 None:intergenic 30.0%
! AGAGTCTAACATTTTTCTCT+TGG + Chr7:84339244-84339263 None:intergenic 30.0%
! ATTGACACTCTTAGACATTT+TGG + Chr7:84339291-84339310 None:intergenic 30.0%
! CTTTAACTTTCACATGAAAC+TGG - Chr7:84340949-84340968 MsG0780040926.01.T01:intron 30.0%
! GAGTCTAACATTTTTCTCTT+GGG + Chr7:84339243-84339262 None:intergenic 30.0%
! TAGACTTCTTGGTGATATAT+TGG - Chr7:84341531-84341550 MsG0780040926.01.T01:intron 30.0%
! TAGTTGATCTGGAACAATTT+AGG - Chr7:84340137-84340156 MsG0780040926.01.T01:intron 30.0%
! TGCAGATAAGATTCTTGTTT+AGG - Chr7:84341615-84341634 MsG0780040926.01.T01:intron 30.0%
! TTATCGACTGCAGTAATAAA+TGG - Chr7:84341301-84341320 MsG0780040926.01.T01:intron 30.0%
!! AAGTGACACTCATTTTGAAA+CGG + Chr7:84339489-84339508 None:intergenic 30.0%
!! AATATCAATGAAAGGTACCT+AGG - Chr7:84338997-84339016 MsG0780040926.01.T01:CDS 30.0%
!! AGATGAACGCATAATTTGTT+GGG - Chr7:84339190-84339209 MsG0780040926.01.T01:CDS 30.0%
!! ATTAATTTGGTGATTTGGTG+TGG - Chr7:84340270-84340289 MsG0780040926.01.T01:intron 30.0%
!! GATTTTTCTCTTCCTTGTTT+TGG - Chr7:84340513-84340532 MsG0780040926.01.T01:intron 30.0%
AATTAAAAAGTGGGAGGATG+GGG + Chr7:84341072-84341091 None:intergenic 35.0%
AGAAGAGGATTATTTCCCAA+TGG - Chr7:84340540-84340559 MsG0780040926.01.T01:intron 35.0%
ATCAGCAGCAGAATATTCAA+TGG + Chr7:84339967-84339986 None:intergenic 35.0%
ATCTGGTCCCATAATAAGAA+TGG + Chr7:84338837-84338856 None:intergenic 35.0%
CAAGCAAGATTGGGTATAAT+TGG + Chr7:84338806-84338825 None:intergenic 35.0%
CAATTATACCCAATCTTGCT+TGG - Chr7:84338804-84338823 MsG0780040926.01.T01:three_prime_UTR 35.0%
CACACAAATACAATCGCAAA+AGG + Chr7:84339926-84339945 None:intergenic 35.0%
CATGTGATTAAGTATAGGCA+AGG - Chr7:84338653-84338672 MsG0780040926.01.T01:three_prime_UTR 35.0%
GAATTCATCTCTGTTGTTGA+AGG - Chr7:84340649-84340668 MsG0780040926.01.T01:intron 35.0%
GAGAAAAATGTTAGACTCTC+CGG - Chr7:84339245-84339264 MsG0780040926.01.T01:CDS 35.0%
GCAAAAAAATGTCCTACAAG+AGG + Chr7:84339097-84339116 None:intergenic 35.0%
GGTAAACCCCATTCTTATTA+TGG - Chr7:84338826-84338845 MsG0780040926.01.T01:three_prime_UTR 35.0%
TAAATCCAAGACCAAAGGTA+TGG - Chr7:84338741-84338760 MsG0780040926.01.T01:three_prime_UTR 35.0%
TACACTGGTGTATGAAATTG+TGG - Chr7:84340393-84340412 MsG0780040926.01.T01:intron 35.0%
TCTAGGGAAGATGAGTATAT+AGG - Chr7:84338916-84338935 MsG0780040926.01.T01:three_prime_UTR 35.0%
TCTGGTCCCATAATAAGAAT+GGG + Chr7:84338836-84338855 None:intergenic 35.0%
TGATTAAGTATAGGCAAGGT+AGG - Chr7:84338657-84338676 MsG0780040926.01.T01:three_prime_UTR 35.0%
TGTGGGAAAATACAATACAC+TGG - Chr7:84340378-84340397 MsG0780040926.01.T01:intron 35.0%
TTCAATCACCTTAGTTGATC+TGG - Chr7:84340126-84340145 MsG0780040926.01.T01:intron 35.0%
TTGAATAATGCCGGAATGAA+TGG - Chr7:84341795-84341814 MsG0780040926.01.T01:CDS 35.0%
TTTAGCCATTTGAGCAAGTT+AGG + Chr7:84339034-84339053 None:intergenic 35.0%
! CAGTAATTTGTCCGTTGTAT+TGG + Chr7:84340174-84340193 None:intergenic 35.0%
! CTCCGAATTTAAAACTCGAA+AGG - Chr7:84339786-84339805 MsG0780040926.01.T01:intron 35.0%
! CTTGTTTAGGTTATGATGCT+TGG - Chr7:84341628-84341647 MsG0780040926.01.T01:intron 35.0%
! CTTTTGCAAACAAGTCACAA+TGG + Chr7:84340630-84340649 None:intergenic 35.0%
! CTTTTGCGATTGTATTTGTG+TGG - Chr7:84339924-84339943 MsG0780040926.01.T01:intron 35.0%
! TTGCTATTGAAATCGCAGAT+CGG + Chr7:84339827-84339846 None:intergenic 35.0%
!! ATTGGTCTTATGATGGGAAT+GGG - Chr7:84340975-84340994 MsG0780040926.01.T01:intron 35.0%
!! ATTTGCTGACTCTAATGTCT+TGG - Chr7:84340575-84340594 MsG0780040926.01.T01:intron 35.0%
!! CATACACTCCTCTTTTGAAA+CGG + Chr7:84341736-84341755 None:intergenic 35.0%
!! TATTGGTCTTATGATGGGAA+TGG - Chr7:84340974-84340993 MsG0780040926.01.T01:intron 35.0%
!!! AAGGCATTTATTTTGCAGGA+TGG + Chr7:84339320-84339339 None:intergenic 35.0%
!!! AGGACATTTTTTTGCAGGAA+TGG - Chr7:84339102-84339121 MsG0780040926.01.T01:intron 35.0%
!!! CTTGTAGGACATTTTTTTGC+AGG - Chr7:84339097-84339116 MsG0780040926.01.T01:intron 35.0%
!!! CTTTCGAGTTTTAAATTCGG+AGG + Chr7:84339788-84339807 None:intergenic 35.0%
AAAAATGTTAGACTCTCCGG+CGG - Chr7:84339248-84339267 MsG0780040926.01.T01:CDS 40.0%
ATGAAGAAATGTTGATCCGC+TGG - Chr7:84339151-84339170 MsG0780040926.01.T01:intron 40.0%
ATGTATCGCCGTTTCAAAAG+AGG - Chr7:84341725-84341744 MsG0780040926.01.T01:CDS 40.0%
CACTAAACATCGAGCTCATT+TGG - Chr7:84341240-84341259 MsG0780040926.01.T01:intron 40.0%
CCTCTTCTATCACCAAAACA+AGG + Chr7:84340528-84340547 None:intergenic 40.0%
CGATTGTATTTGTGTGGTAG+TGG - Chr7:84339930-84339949 MsG0780040926.01.T01:intron 40.0%
CTGGTCCCATAATAAGAATG+GGG + Chr7:84338835-84338854 None:intergenic 40.0%
CTTCAATGAATACAGAGCAG+TGG - Chr7:84341375-84341394 MsG0780040926.01.T01:intron 40.0%
GAAGGAAGACAGGTTTATCA+TGG + Chr7:84341050-84341069 None:intergenic 40.0%
GCAAGGTAGGAACAACATTA+TGG - Chr7:84338670-84338689 MsG0780040926.01.T01:three_prime_UTR 40.0%
GCTTATCTCCATCAAAGATC+TGG + Chr7:84338784-84338803 None:intergenic 40.0%
GTTGAAACAAGCCAAAGAAG+AGG - Chr7:84341204-84341223 MsG0780040926.01.T01:intron 40.0%
TATGATATATACGAGGAGCG+AGG + Chr7:84341012-84341031 None:intergenic 40.0%
TATGGCAAGCTATTCAAACG+AGG - Chr7:84338688-84338707 MsG0780040926.01.T01:three_prime_UTR 40.0%
TCAGAACATCTTTAACGGTG+AGG - Chr7:84338963-84338982 MsG0780040926.01.T01:CDS 40.0%
TCTATCTCACAAGTATCCAG+CGG + Chr7:84339170-84339189 None:intergenic 40.0%
TGAGCAAGTTAGGCTTTCTT+GGG + Chr7:84339024-84339043 None:intergenic 40.0%
TGAGGAGACCCAGATAATAA+AGG + Chr7:84339339-84339358 None:intergenic 40.0%
TTCACATGAAACTGGGCTAT+TGG - Chr7:84340957-84340976 MsG0780040926.01.T01:intron 40.0%
TTGAGCAAGTTAGGCTTTCT+TGG + Chr7:84339025-84339044 None:intergenic 40.0%
TTTCTCTTGGGAAAGCTTGT+TGG + Chr7:84339231-84339250 None:intergenic 40.0%
! ATTTTCCCACAGTTCTCCTT+TGG + Chr7:84340369-84340388 None:intergenic 40.0%
! GACACTCTTAGACATTTTGG+TGG + Chr7:84339288-84339307 None:intergenic 40.0%
! GGCAACGATTCTTCATCTTT+TGG + Chr7:84339057-84339076 None:intergenic 40.0%
! TTCTCTTGGGAAAGCTTGTT+GGG + Chr7:84339230-84339249 None:intergenic 40.0%
!! AATGGTTGATGACCATGTTG+TGG - Chr7:84339120-84339139 MsG0780040926.01.T01:intron 40.0%
!! CCAAGAAGTCTAGTTCTTCA+CGG + Chr7:84341523-84341542 None:intergenic 40.0%
!! GAAAGCCTAACTTGCTCAAA+TGG - Chr7:84339026-84339045 MsG0780040926.01.T01:CDS 40.0%
!! GGTTCTAAATCCAAGACCAA+AGG - Chr7:84338736-84338755 MsG0780040926.01.T01:three_prime_UTR 40.0%
!! TGGGCTATTGGTCTTATGAT+GGG - Chr7:84340969-84340988 MsG0780040926.01.T01:intron 40.0%
!!! CCTTGTTTTGGTGATAGAAG+AGG - Chr7:84340525-84340544 MsG0780040926.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr7:84339485-84339504 None:intergenic 40.0%
!!! TGACACTCATTTTGAAACGG+AGG + Chr7:84339486-84339505 None:intergenic 40.0%
ACACCAACTCTCCATACCTT+TGG + Chr7:84338755-84338774 None:intergenic 45.0%
ACCGAGGCTAGTAGAATTTC+GGG - Chr7:84341462-84341481 MsG0780040926.01.T01:intron 45.0%
ACTCTCCATACCTTTGGTCT+TGG + Chr7:84338749-84338768 None:intergenic 45.0%
ACTGTAGGGGTAGACTAATC+TGG + Chr7:84340244-84340263 None:intergenic 45.0%
AGACACACACAGTCATTCTC+TGG - Chr7:84339759-84339778 MsG0780040926.01.T01:intron 45.0%
AGCCAAAGAAGAGGCTGAAA+AGG - Chr7:84341213-84341232 MsG0780040926.01.T01:intron 45.0%
AGTTCTCCTTTGGTGGAATG+CGG + Chr7:84340359-84340378 None:intergenic 45.0%
ATACAGAGCAGTGGAGATTC+TGG - Chr7:84341384-84341403 MsG0780040926.01.T01:intron 45.0%
ATGGCATCCAACAACAGTCA+AGG - Chr7:84340741-84340760 MsG0780040926.01.T01:intron 45.0%
ATTCCACCAAAGGAGAACTG+TGG - Chr7:84340360-84340379 MsG0780040926.01.T01:intron 45.0%
CCGTGAAGAACTAGACTTCT+TGG - Chr7:84341520-84341539 MsG0780040926.01.T01:intron 45.0%
CGAGGAACTTGTATTTCTCC+AGG - Chr7:84338706-84338725 MsG0780040926.01.T01:three_prime_UTR 45.0%
GAACATCTTTAACGGTGAGG+TGG - Chr7:84338966-84338985 MsG0780040926.01.T01:CDS 45.0%
GAATTCCCCTTGACTGTTGT+TGG + Chr7:84340751-84340770 None:intergenic 45.0%
GACCGAGGCTAGTAGAATTT+CGG - Chr7:84341461-84341480 MsG0780040926.01.T01:intron 45.0%
GCTAAGAATACCCCTCTTGT+AGG - Chr7:84339082-84339101 MsG0780040926.01.T01:intron 45.0%
GGAACTTGTATTTCTCCAGG+AGG - Chr7:84338709-84338728 MsG0780040926.01.T01:three_prime_UTR 45.0%
GGGTTTACCCAAGCAAGATT+GGG + Chr7:84338815-84338834 None:intergenic 45.0%
TGGCATCCAACAACAGTCAA+GGG - Chr7:84340742-84340761 MsG0780040926.01.T01:intron 45.0%
TGTATTTCTCCAGGAGGTTC+AGG - Chr7:84338715-84338734 MsG0780040926.01.T01:three_prime_UTR 45.0%
TTCCACCAAAGGAGAACTGT+GGG - Chr7:84340361-84340380 MsG0780040926.01.T01:intron 45.0%
! AGACCAAAGGTATGGAGAGT+TGG - Chr7:84338749-84338768 MsG0780040926.01.T01:three_prime_UTR 45.0%
! CTCCTTTTCAGCCTCTTCTT+TGG + Chr7:84341218-84341237 None:intergenic 45.0%
! GATTTAGAACCTGAACCTCC+TGG + Chr7:84338727-84338746 None:intergenic 45.0%
!! AAAGGTATGGAGAGTTGGTG+TGG - Chr7:84338754-84338773 MsG0780040926.01.T01:three_prime_UTR 45.0%
!! AAGGTATGGAGAGTTGGTGT+GGG - Chr7:84338755-84338774 MsG0780040926.01.T01:three_prime_UTR 45.0%
!! CTGGGCTATTGGTCTTATGA+TGG - Chr7:84340968-84340987 MsG0780040926.01.T01:intron 45.0%
!! TATTTGTGTGGTAGTGGCAC+TGG - Chr7:84339936-84339955 MsG0780040926.01.T01:intron 45.0%
!!! TTATTTTTTATTTTTTGAAA+AGG + Chr7:84340323-84340342 None:intergenic 5.0%
AAAAAGTGGGAGGATGGGGA+AGG + Chr7:84341068-84341087 None:intergenic 50.0%
ATCACTCCGCATTCCACCAA+AGG - Chr7:84340350-84340369 MsG0780040926.01.T01:intron 50.0%
CCGAGGCTAGTAGAATTTCG+GGG - Chr7:84341463-84341482 MsG0780040926.01.T01:intron 50.0%
CGAGGCTAGTAGAATTTCGG+GGG - Chr7:84341464-84341483 MsG0780040926.01.T01:intron 50.0%
GATGACCATGTTGTGGACAC+TGG - Chr7:84339127-84339146 MsG0780040926.01.T01:intron 50.0%
GGATAGCACACAGCTTGGAA+TGG + Chr7:84340476-84340495 None:intergenic 50.0%
GGCATCCAACAACAGTCAAG+GGG - Chr7:84340743-84340762 MsG0780040926.01.T01:intron 50.0%
GGGGTTTACCCAAGCAAGAT+TGG + Chr7:84338816-84338835 None:intergenic 50.0%
GTGGGCAACCAGATCTTTGA+TGG - Chr7:84338773-84338792 MsG0780040926.01.T01:three_prime_UTR 50.0%
GTTAGGCTTTCTTGGGACCT+AGG + Chr7:84339017-84339036 None:intergenic 50.0%
TCATGCCAGTGTCCACAACA+TGG + Chr7:84339135-84339154 None:intergenic 50.0%
TTCCCACAGTTCTCCTTTGG+TGG + Chr7:84340366-84340385 None:intergenic 50.0%
TTGCAGGATAGCACACAGCT+TGG + Chr7:84340481-84340500 None:intergenic 50.0%
! CCCCGAAATTCTACTAGCCT+CGG + Chr7:84341466-84341485 None:intergenic 50.0%
! CTGCTGAACAAGAAGCACAG+CGG - Chr7:84340783-84340802 MsG0780040926.01.T01:intron 50.0%
!! GAGGGGTATTCTTAGCATGC+TGG + Chr7:84339078-84339097 None:intergenic 50.0%
!! TGGGAAAGCTTGTTGGGACA+TGG + Chr7:84339224-84339243 None:intergenic 50.0%
CTCCGGCGGATCTAATACTC+AGG - Chr7:84339262-84339281 MsG0780040926.01.T01:CDS 55.0%
GATCCATCAGCTGAAGACCG+AGG - Chr7:84341446-84341465 MsG0780040926.01.T01:intron 55.0%
GGCCTGAGTATTAGATCCGC+CGG + Chr7:84339267-84339286 None:intergenic 55.0%
TAGCCTCGGTCTTCAGCTGA+TGG + Chr7:84341452-84341471 None:intergenic 55.0%
GGAGGATGGGGAAGGAAGAC+AGG + Chr7:84341060-84341079 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 84338641 84341828 84338641 ID=MsG0780040926.01;Name=MsG0780040926.01
Chr7 mRNA 84338641 84341828 84338641 ID=MsG0780040926.01.T01;Parent=MsG0780040926.01;Name=MsG0780040926.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0.25|0.4|0.8|0.75|0.6|5|295|210
Chr7 exon 84338641 84339079 84338641 ID=MsG0780040926.01.T01:exon:40735;Parent=MsG0780040926.01.T01
Chr7 exon 84339178 84339300 84339178 ID=MsG0780040926.01.T01:exon:40734;Parent=MsG0780040926.01.T01
Chr7 exon 84339463 84339554 84339463 ID=MsG0780040926.01.T01:exon:40733;Parent=MsG0780040926.01.T01
Chr7 exon 84339642 84339729 84339642 ID=MsG0780040926.01.T01:exon:40732;Parent=MsG0780040926.01.T01
Chr7 exon 84341643 84341828 84341643 ID=MsG0780040926.01.T01:exon:40731;Parent=MsG0780040926.01.T01
Chr7 CDS 84341643 84341828 84341643 ID=MsG0780040926.01.T01:cds;Parent=MsG0780040926.01.T01
Chr7 CDS 84339642 84339729 84339642 ID=MsG0780040926.01.T01:cds;Parent=MsG0780040926.01.T01
Chr7 CDS 84339463 84339554 84339463 ID=MsG0780040926.01.T01:cds;Parent=MsG0780040926.01.T01
Chr7 CDS 84339178 84339300 84339178 ID=MsG0780040926.01.T01:cds;Parent=MsG0780040926.01.T01
Chr7 CDS 84338936 84339079 84338936 ID=MsG0780040926.01.T01:cds;Parent=MsG0780040926.01.T01
Chr7 three_prime_UTR 84338641 84338935 84338641 ID=MsG0780040926.01.T01:three_prime_utr;Parent=MsG0780040926.01.T01
Gene Sequence

>MsG0780040926.01.T01

ATGAGTGATTTTCATGTGATTAAGTATAGGCAAGGTAGGAACAACATTATGGCAAGCTATTCAAACGAGGAACTTGTATTTCTCCAGGAGGTTCAGGTTCTAAATCCAAGACCAAAGGTATGGAGAGTTGGTGTGGGCAACCAGATCTTTGATGGAGATAAGCCAATTATACCCAATCTTGCTTGGAATGGCATCCAACAACAGTCAAGGGGAATTCAACAATTATTGGCTGCTGAACAAGAAGCACAGCGGATTGTGAATGCTGCAAAAAATGATTGTTTATCTTTTCTTTATCCTTCTTGTGTTATCTTTAACTTTCACATGAAACTGGGCTATTGGTCTTATGATGGGAATGGGTTTTCTTGTTATTCTGCATCTCTACTGTTAGAAAAATATGCTAGGTTGAAACAAGCCAAAGAAGAGGCTGAAAAGGAGATCACTAAACATCGAGCTCATTTGGAAAATCATTTTCAAAACAAAGTATCAGCGAGCAGTGGAGATTCTGGTGCTAATGTCAAGCGACTTGAGCAAGAGACTGATACAAAGATCCATCAGCTGAAGACCGAGGCTAGTAGAATTTCGGGGGATGTTGTCAGCACACTTCTCAAGTATGTAACAACCGTGAAGAACTAG

Protein sequence

>MsG0780040926.01.T01

MSDFHVIKYRQGRNNIMASYSNEELVFLQEVQVLNPRPKVWRVGVGNQIFDGDKPIIPNLAWNGIQQQSRGIQQLLAAEQEAQRIVNAAKNDCLSFLYPSCVIFNFHMKLGYWSYDGNGFSCYSASLLLEKYARLKQAKEEAEKEITKHRAHLENHFQNKVSASSGDSGANVKRLEQETDTKIHQLKTEASRISGDVVSTLLKYVTTVKN*