AlfalfaGEDB | MsG0280010547.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010547.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010547.01.T01	RHN75408.1	54	100	14	5	226	317	86	161	1.42E-13	79.3

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010547.01.T01	A0A396JGD3	54.000	100	14	5	226	317	86	161	6.78e-14	79.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048383.01	MsG0280010547.01	0.817504	3.186048e-52	2.324521e-49
MsG0180000023.01	MsG0280010547.01	0.804244	2.371036e-49	1.216349e-46
MsG0180000611.01	MsG0280010547.01	0.800009	1.762305e-48	8.116748e-46
MsG0180003822.01	MsG0280010547.01	0.829234	5.770557e-55	5.871115e-52
MsG0180004016.01	MsG0280010547.01	0.807515	4.868836e-50	2.717339e-47
MsG0180004160.01	MsG0280010547.01	0.802311	5.958032e-49	2.909318e-46
MsG0180004486.01	MsG0280010547.01	0.803187	3.929809e-49	1.962125e-46
MsG0180004991.01	MsG0280010547.01	0.800785	1.224724e-48	5.752790e-46
MsG0180005049.01	MsG0280010547.01	0.802429	5.635292e-49	2.759897e-46
MsG0180005443.01	MsG0280010547.01	0.804652	1.949312e-49	1.010630e-46
MsG0280006519.01	MsG0280010547.01	0.801343	9.415498e-49	4.485775e-46
MsG0280006679.01	MsG0280010547.01	0.837602	4.719610e-57	6.161854e-54
MsG0280006892.01	MsG0280010547.01	0.812527	4.054387e-51	2.583988e-48
MsG0280008004.01	MsG0280010547.01	0.811945	5.431664e-51	3.407723e-48
MsG0280009270.01	MsG0280010547.01	0.810176	1.313035e-50	7.860240e-48
MsG0280010547.01	MsG0280010553.01	0.848347	6.495442e-60	1.188478e-56
MsG0280010547.01	MsG0380011927.01	0.822071	2.881417e-53	2.386469e-50
MsG0280010547.01	MsG0480020877.01	0.811268	7.620214e-51	4.695809e-48
MsG0280010547.01	MsG0480021432.01	0.803447	3.470968e-49	1.744646e-46
MsG0280010547.01	MsG0480023240.01	0.804633	1.967309e-49	1.019420e-46
MsG0280010547.01	MsG0480023377.01	0.825511	4.505431e-54	4.114942e-51
MsG0280010547.01	MsG0580024421.01	0.813285	2.766022e-51	1.798754e-48
MsG0280010547.01	MsG0580024618.01	0.803727	3.037210e-49	1.537624e-46
MsG0280010547.01	MsG0580025922.01	0.804902	1.728555e-49	9.020741e-47
MsG0280010547.01	MsG0580026864.01	0.812461	4.191427e-51	2.666751e-48
MsG0280010547.01	MsG0580028526.01	0.802785	4.758534e-49	2.351736e-46
MsG0280010547.01	MsG0580028747.01	0.801766	7.711547e-49	3.713289e-46
MsG0280010547.01	MsG0580029539.01	0.811510	6.753809e-51	4.188790e-48
MsG0280010547.01	MsG0580029801.01	0.866270	3.223928e-65	1.080248e-61
MsG0280010547.01	MsG0580029919.01	0.813661	2.285792e-51	1.501802e-48
MsG0280010547.01	MsG0680031654.01	0.805905	1.065015e-49	5.702606e-47
MsG0280010547.01	MsG0680031699.01	0.809110	2.224741e-50	1.294869e-47
MsG0280010547.01	MsG0680032075.01	0.801616	8.279811e-49	3.971769e-46
MsG0280010547.01	MsG0680034109.01	0.805328	1.407400e-49	7.425001e-47
MsG0280010547.01	MsG0780039340.01	0.800954	1.130722e-48	5.334656e-46
MsG0280010547.01	MsG0780039828.01	0.836053	1.172250e-56	1.460316e-53
MsG0280010547.01	MsG0780039845.01	0.823548	1.305664e-53	1.127676e-50
MsG0280010547.01	MsG0780040125.01	0.821499	3.908292e-53	3.184949e-50
MsG0280010547.01	MsG0780040182.01	0.805875	1.080789e-49	5.782586e-47
MsG0280010547.01	MsG0780040190.01	0.830615	2.658576e-55	2.815600e-52
MsG0280010547.01	MsG0780040389.01	0.816534	5.262017e-52	3.738294e-49
MsG0280010547.01	MsG0780040424.01	0.804635	1.964897e-49	1.018244e-46
MsG0280010547.01	MsG0780040569.01	0.807973	3.891004e-50	2.197675e-47
MsG0280010547.01	MsG0780041423.01	0.801854	7.397084e-49	3.570089e-46
MsG0280010547.01	MsG0880042033.01	0.807970	3.895874e-50	2.200250e-47
MsG0280010547.01	MsG0880042399.01	-0.800169	1.634504e-48	7.558822e-46
MsG0280010547.01	MsG0880042760.01	0.812899	3.360181e-51	2.162577e-48
MsG0280010547.01	MsG0880042795.01	0.811109	8.250345e-51	5.063004e-48
MsG0280010547.01	MsG0880044409.01	0.813244	2.823466e-51	1.834023e-48
MsG0280010547.01	MsG0880045656.01	0.808365	3.210673e-50	1.832365e-47
MsG0280010547.01	MsG0880045869.01	0.810813	9.565855e-51	5.824115e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010547.01.T01	MTR_2g084815	54.000	100	14	5	226	317	188	263	3.43e-17	80.9
MsG0280010547.01.T01	MTR_2g084815	54.000	100	14	5	226	317	211	286	5.05e-17	80.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 71 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCTCCAGACTTGGGAGATT+TGG	0.246379	2:+71282267	None:intergenic
ACGTAAATAGCCGAATTCTT+TGG	0.277920	2:-71284767	MsG0280010547.01.T01:CDS
CCATGGCATGTTTAGCCTTC+AGG	0.278877	2:+71283468	None:intergenic
TAACATGCGTAGGGGCATTT+TGG	0.286572	2:-71284814	None:intergenic
TCTTCATCTTTCTCCTCGTT+TGG	0.289702	2:+71283314	None:intergenic
TCAGTCTTTCCACCTTCCTT+AGG	0.293756	2:+71282292	None:intergenic
CTTAAACAAGATGACATTAC+TGG	0.322324	2:-71284729	MsG0280010547.01.T01:CDS
TTCTGCAGGTGCAGCATTCA+TGG	0.329326	2:+71283355	None:intergenic
CGTAAATAGCCGAATTCTTT+GGG	0.329810	2:-71284766	MsG0280010547.01.T01:CDS
TGCTCTTTACCCAAAGAATT+CGG	0.362351	2:+71284757	None:intergenic
GTTCTTGAAATGATGGATCT+TGG	0.386844	2:-71284033	MsG0280010547.01.T01:CDS
TTTAGCACTGACGGGAGCTT+TGG	0.391957	2:-71283932	MsG0280010547.01.T01:CDS
CAGTCTTTCCACCTTCCTTA+GGG	0.410326	2:+71282293	None:intergenic
ACGAGCTTTATCAGAAGATT+AGG	0.413583	2:-71283903	MsG0280010547.01.T01:intron
AATGAAAACAGCCTTGTCAT+TGG	0.425093	2:+71283960	None:intergenic
TAACTTAAGAACTTGGCAAA+TGG	0.426817	2:+71282994	None:intergenic
GTTTCTGCAGCAGATTCATT+AGG	0.439807	2:+71283163	None:intergenic
GAGGATTGTTCTTGAAATGA+TGG	0.442370	2:-71284040	MsG0280010547.01.T01:CDS
TTCGTCAATGTACAGCTGTT+GGG	0.442872	2:+71284068	None:intergenic
GATGCCAAATCTCCCAAGTC+TGG	0.449028	2:-71282271	MsG0280010547.01.T01:CDS
TTGTTAGATGGTAAGAAAGC+TGG	0.456417	2:-71282334	MsG0280010547.01.T01:intron
CTTCGTCAATGTACAGCTGT+TGG	0.459677	2:+71284067	None:intergenic
ATCTCCCAAGTCTGGAGGAC+AGG	0.468232	2:-71282263	MsG0280010547.01.T01:CDS
ACTGTCCTGTCCTCCAGACT+TGG	0.471440	2:+71282258	None:intergenic
AAATGATGGATCTTGGAGGC+TGG	0.479023	2:-71284026	MsG0280010547.01.T01:CDS
ATTGTGTTGTTGATAGATCA+TGG	0.479422	2:-71282972	MsG0280010547.01.T01:CDS
TTTATTAATGTTTAGGCTTG+AGG	0.483159	2:-71283501	MsG0280010547.01.T01:intron
ACGTGCACGTGGACGTGAGC+TGG	0.497525	2:-71283414	MsG0280010547.01.T01:CDS
TTCTGATGAGACTGTGAAGA+AGG	0.500279	2:-71283291	MsG0280010547.01.T01:intron
ACAACCTTCACTTCTTCTGC+AGG	0.504350	2:+71283341	None:intergenic
AACACAATAACTTAAGAACT+TGG	0.506339	2:+71282987	None:intergenic
TCTTGGAGGCTGGGATGCTA+TGG	0.515882	2:-71284016	MsG0280010547.01.T01:CDS
TTTCCACCTTCCTTAGGGTG+AGG	0.518153	2:+71282298	None:intergenic
AAAACCGATCCTGAGAAAAC+CGG	0.531933	2:-71283124	MsG0280010547.01.T01:intron
ACGTGCACGTTCAGCCTCCA+TGG	0.532243	2:+71283451	None:intergenic
CTTGAAATGATGGATCTTGG+AGG	0.537283	2:-71284030	MsG0280010547.01.T01:CDS
ACGTGCAAGTGCAGCCTCCA+TGG	0.541146	2:+71283379	None:intergenic
GGCTGAACGTGCACGTGACA+TGG	0.544596	2:-71283444	MsG0280010547.01.T01:CDS
TTCCATTTCAGCGGAAGCCA+TGG	0.550292	2:-71284620	MsG0280010547.01.T01:intron
TGCTCCACTTGAAGATGCCA+TGG	0.552042	2:+71284603	None:intergenic
GACTGGACTCGAAGAGGACA+AGG	0.563356	2:-71284136	MsG0280010547.01.T01:CDS
AGCGGGACTTAACATGCGTA+GGG	0.569178	2:-71284823	None:intergenic
GCACTGACGGGAGCTTTGGA+AGG	0.570184	2:-71283928	MsG0280010547.01.T01:CDS
CTGTCCTGTCCTCCAGACTT+GGG	0.571955	2:+71282259	None:intergenic
AATGATGGATCTTGGAGGCT+GGG	0.575002	2:-71284025	MsG0280010547.01.T01:CDS
TGAGGCTGATCGTGACCTGA+AGG	0.582410	2:-71283483	MsG0280010547.01.T01:CDS
CCTGAAGGCTAAACATGCCA+TGG	0.583814	2:-71283468	MsG0280010547.01.T01:CDS
TACAGCAATTCCTCACCCTA+AGG	0.585173	2:-71282308	MsG0280010547.01.T01:CDS
GCTGGAGGCTAAACGTGCCA+TGG	0.595058	2:-71283396	MsG0280010547.01.T01:CDS
TCGTTTGATAAATCTTCTTG+AGG	0.607052	2:-71284181	MsG0280010547.01.T01:CDS
ATTCCTCACCCTAAGGAAGG+TGG	0.612537	2:-71282301	MsG0280010547.01.T01:CDS
TTAAACAAGATGACATTACT+GGG	0.616456	2:-71284728	MsG0280010547.01.T01:intron
GCAATTCCTCACCCTAAGGA+AGG	0.627632	2:-71282304	MsG0280010547.01.T01:CDS
TAGCGGGACTTAACATGCGT+AGG	0.632310	2:-71284824	None:intergenic
GAAGCCATGGCATCTTCAAG+TGG	0.639878	2:-71284607	MsG0280010547.01.T01:CDS
GCCAAATCTCCCAAGTCTGG+AGG	0.652249	2:-71282268	MsG0280010547.01.T01:CDS
TTGCTTAGTGAATACTATCG+AGG	0.654655	2:-71284223	MsG0280010547.01.T01:intron
TGCACGTGGACGTGAGCTGG+AGG	0.658184	2:-71283411	MsG0280010547.01.T01:CDS
ATTGTCTGAAGCCAATGACA+AGG	0.668592	2:-71283971	MsG0280010547.01.T01:CDS
GGAGGCTAAACGTGCCATGG+AGG	0.669867	2:-71283393	MsG0280010547.01.T01:CDS
TGCACCTGCAGAAGAAGTGA+AGG	0.670652	2:-71283345	MsG0280010547.01.T01:CDS
GAAGGCTAAACATGCCATGG+AGG	0.681550	2:-71283465	MsG0280010547.01.T01:CDS
AAGTCTGGAGGACAGGACAG+TGG	0.693625	2:-71282256	MsG0280010547.01.T01:CDS
ATTTATCAAACGATCCTCAG+TGG	0.697750	2:+71284191	None:intergenic
TGAACGTGCACGTGACATGG+AGG	0.706451	2:-71283441	MsG0280010547.01.T01:CDS
ATGGAGGCTATACGTGCACG+TGG	0.711324	2:-71283425	MsG0280010547.01.T01:CDS
TGTACATTGACGAAGTAACG+AGG	0.717475	2:-71284059	MsG0280010547.01.T01:CDS
GAAGGTTGTTGATCCAAACG+AGG	0.741295	2:-71283327	MsG0280010547.01.T01:CDS
GCGGGACTTAACATGCGTAG+GGG	0.752926	2:-71284822	None:intergenic
AGGTTGACAAGGGAAAGAAG+AGG	0.755319	2:-71283186	MsG0280010547.01.T01:CDS
CGAGGAAGTGAACACCACTG+AGG	0.780816	2:-71284205	MsG0280010547.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAATTTAAACACAAATTA+CGG	+	Chr2:71284650-71284669	None:intergenic	10.0%
!!!	ATTTTATGTTATAATTGTTA+TGG	-	Chr2:71283761-71283780	MsG0280010547.01.T01:intron	10.0%
!!	AAATGTAAAAATGAAAATGT+AGG	+	Chr2:71282363-71282382	None:intergenic	15.0%
!!	AGGATATATAAATCTATATA+TGG	+	Chr2:71284410-71284429	None:intergenic	15.0%
!!	ATTAAATTACAGAAGATTAT+AGG	+	Chr2:71282443-71282462	None:intergenic	15.0%
!!	TTAAAAATTAAAGAATCTAG+TGG	+	Chr2:71282645-71282664	None:intergenic	15.0%
!!	TTAAATTACAGAAGATTATA+GGG	+	Chr2:71282442-71282461	None:intergenic	15.0%
!!!	AATTTTACGATAATCAATAT+AGG	-	Chr2:71282715-71282734	MsG0280010547.01.T01:intron	15.0%
!!!	ATATGTTTATTACTTTTAGA+TGG	-	Chr2:71284803-71284822	MsG0280010547.01.T01:CDS	15.0%
!!!	ATTTTACGATAATCAATATA+GGG	-	Chr2:71282716-71282735	MsG0280010547.01.T01:intron	15.0%
!!!	TATGTTTATTACTTTTAGAT+GGG	-	Chr2:71284804-71284823	MsG0280010547.01.T01:CDS	15.0%
!!!	TTAATTTTTTTACATGTCAT+TGG	-	Chr2:71283409-71283428	MsG0280010547.01.T01:CDS	15.0%
!!	CAAAAATCAATGAATTGAAT+TGG	+	Chr2:71282533-71282552	None:intergenic	20.0%
!!	GTAGAAAGATATAAACAATA+CGG	+	Chr2:71284077-71284096	None:intergenic	20.0%
!!	TAATATGATATCCATTCTTA+AGG	-	Chr2:71283251-71283270	MsG0280010547.01.T01:intron	20.0%
!!	TAGGTTTGTAAATTTATACT+CGG	+	Chr2:71282344-71282363	None:intergenic	20.0%
!!	TTACAATAGATAATACAACT+TGG	+	Chr2:71283909-71283928	None:intergenic	20.0%
!!	TTTACAGATGTATAGTATTA+CGG	+	Chr2:71284443-71284462	None:intergenic	20.0%
!!!	ATCTTGTCTTTTAATTTTGA+AGG	-	Chr2:71283796-71283815	MsG0280010547.01.T01:intron	20.0%
!!!	GTGTTTAAATTTTTGTTAGA+TGG	-	Chr2:71284656-71284675	MsG0280010547.01.T01:intron	20.0%
!	AAACCCAAAAAAATGTCATT+GGG	+	Chr2:71282318-71282337	None:intergenic	25.0%
!	AACACAATAACTTAAGAACT+TGG	+	Chr2:71284018-71284037	None:intergenic	25.0%
!	AGCCTAAACATTAATAAACT+AGG	+	Chr2:71283499-71283518	None:intergenic	25.0%
!	CAAACAATGTTTCAATCTAA+GGG	+	Chr2:71284527-71284546	None:intergenic	25.0%
!	GACAACTATAAAATATCACT+AGG	+	Chr2:71283282-71283301	None:intergenic	25.0%
!	GCCTAAACATTAATAAACTA+GGG	+	Chr2:71283498-71283517	None:intergenic	25.0%
!	TAAACATTAATAAACTAGGG+AGG	+	Chr2:71283495-71283514	None:intergenic	25.0%
!	TAAACCCAAAAAAATGTCAT+TGG	+	Chr2:71282319-71282338	None:intergenic	25.0%
!	TCAAACAATGTTTCAATCTA+AGG	+	Chr2:71284528-71284547	None:intergenic	25.0%
!	TCCCTAGTTTATTAATGTTT+AGG	-	Chr2:71283494-71283513	MsG0280010547.01.T01:intron	25.0%
!	TTAAACAAGATGACATTACT+GGG	-	Chr2:71282274-71282293	MsG0280010547.01.T01:CDS	25.0%
!	TTTATTAATGTTTAGGCTTG+AGG	-	Chr2:71283501-71283520	MsG0280010547.01.T01:intron	25.0%
!!	CTGTTTTCATTTTGTCTAAT+TGG	-	Chr2:71283945-71283964	MsG0280010547.01.T01:CDS	25.0%
!!	TTTTACATTTTCCATTTCAG+CGG	-	Chr2:71282373-71282392	MsG0280010547.01.T01:intron	25.0%
!!!	ATTTTTCAAAGTTGACTGTT+AGG	-	Chr2:71282910-71282929	MsG0280010547.01.T01:intron	25.0%
!!!	TTAATTTTGAAGGTTGACAA+GGG	-	Chr2:71283806-71283825	MsG0280010547.01.T01:intron	25.0%
!!!	TTTAATTTTGAAGGTTGACA+AGG	-	Chr2:71283805-71283824	MsG0280010547.01.T01:intron	25.0%
	ATCGTAAAATTACGAGAGAA+TGG	+	Chr2:71282706-71282725	None:intergenic	30.0%
	CTTAAACAAGATGACATTAC+TGG	-	Chr2:71282273-71282292	MsG0280010547.01.T01:CDS	30.0%
	TAACTTAAGAACTTGGCAAA+TGG	+	Chr2:71284011-71284030	None:intergenic	30.0%
	TAGCGAATAGTATAGTGAAT+TGG	+	Chr2:71282669-71282688	None:intergenic	30.0%
	TCATTTCATAGAACACAACA+AGG	-	Chr2:71282572-71282591	MsG0280010547.01.T01:intron	30.0%
	TCGTTTGATAAATCTTCTTG+AGG	-	Chr2:71282821-71282840	MsG0280010547.01.T01:intron	30.0%
	TTGTAAATAAACTTTCCCCT+CGG	-	Chr2:71283314-71283333	MsG0280010547.01.T01:CDS	30.0%
!	AACTTTGAAAAATCACGTTC+AGG	+	Chr2:71282903-71282922	None:intergenic	30.0%
!	ATTGTGTTGTTGATAGATCA+TGG	-	Chr2:71284030-71284049	MsG0280010547.01.T01:CDS	30.0%
!	CATGTCAATGCTGAAATTTT+AGG	-	Chr2:71284554-71284573	MsG0280010547.01.T01:intron	30.0%
!!	AATGTAGCTTGTTTGTATCA+TGG	-	Chr2:71284274-71284293	MsG0280010547.01.T01:intron	30.0%
!!	CATTGAAATTTTAGCACTGA+CGG	-	Chr2:71283061-71283080	MsG0280010547.01.T01:intron	30.0%
!!	GCATTTTGGTCTTTTACTTT+GGG	-	Chr2:71282202-71282221	MsG0280010547.01.T01:CDS	30.0%
!!	TAATGGTACATTTGCTATCA+CGG	-	Chr2:71283734-71283753	MsG0280010547.01.T01:intron	30.0%
!!!	AATTTTTCAAGAAGTACCGA+GGG	+	Chr2:71283333-71283352	None:intergenic	30.0%
!!!	ATTCTGAAGTTTTAGTTGGT+TGG	-	Chr2:71284151-71284170	MsG0280010547.01.T01:CDS	30.0%
!!!	ATTGAAATTTTAGCACTGAC+GGG	-	Chr2:71283062-71283081	MsG0280010547.01.T01:intron	30.0%
!!!	GTCAATTCTGAAGTTTTAGT+TGG	-	Chr2:71284147-71284166	MsG0280010547.01.T01:CDS	30.0%
	AAACTAGGGAGGTTTATTAC+AGG	+	Chr2:71283484-71283503	None:intergenic	35.0%
	AATGTTTCAATCTAAGGGTG+AGG	+	Chr2:71284522-71284541	None:intergenic	35.0%
	ACGTAAATAGCCGAATTCTT+TGG	-	Chr2:71282235-71282254	MsG0280010547.01.T01:CDS	35.0%
	AGTATTACGGATGTAACAGA+AGG	+	Chr2:71284430-71284449	None:intergenic	35.0%
	ATAATACAACTTGGTCTCAC+CGG	+	Chr2:71283900-71283919	None:intergenic	35.0%
	ATTTATCAAACGATCCTCAG+TGG	+	Chr2:71282814-71282833	None:intergenic	35.0%
	CAAATTACGGATGTAACAGA+AGG	+	Chr2:71284637-71284656	None:intergenic	35.0%
	CGTAAATAGCCGAATTCTTT+GGG	-	Chr2:71282236-71282255	MsG0280010547.01.T01:CDS	35.0%
	GAAAAATCACGTTCAGGATA+AGG	+	Chr2:71282897-71282916	None:intergenic	35.0%
	GAGGATTGTTCTTGAAATGA+TGG	-	Chr2:71282962-71282981	MsG0280010547.01.T01:CDS	35.0%
	TGCTCTTTACCCAAAGAATT+CGG	+	Chr2:71282248-71282267	None:intergenic	35.0%
	TTGCTTAGTGAATACTATCG+AGG	-	Chr2:71282779-71282798	MsG0280010547.01.T01:intron	35.0%
	TTGTTAGATGGTAAGAAAGC+TGG	-	Chr2:71284668-71284687	MsG0280010547.01.T01:intron	35.0%
!	AATGAAAACAGCCTTGTCAT+TGG	+	Chr2:71283045-71283064	None:intergenic	35.0%
!	ACGAGCTTTATCAGAAGATT+AGG	-	Chr2:71283099-71283118	MsG0280010547.01.T01:intron	35.0%
!!	GCAATTTCCATTTTTCAGAC+TGG	-	Chr2:71282849-71282868	MsG0280010547.01.T01:intron	35.0%
!!	GGCATTTTGGTCTTTTACTT+TGG	-	Chr2:71282201-71282220	MsG0280010547.01.T01:CDS	35.0%
!!	GTTCTTGAAATGATGGATCT+TGG	-	Chr2:71282969-71282988	MsG0280010547.01.T01:CDS	35.0%
!!!	ATTTTTCAAGAAGTACCGAG+GGG	+	Chr2:71283332-71283351	None:intergenic	35.0%
!!!	CAATTTTTCAAGAAGTACCG+AGG	+	Chr2:71283334-71283353	None:intergenic	35.0%
	AAAACCGATCCTGAGAAAAC+CGG	-	Chr2:71283878-71283897	MsG0280010547.01.T01:intron	40.0%
	ACTAGGACACACCTTAAGAA+TGG	+	Chr2:71283265-71283284	None:intergenic	40.0%
	CAAAAAAATGTCATTGGGCC+GGG	+	Chr2:71282313-71282332	None:intergenic	40.0%
	CCAAAAAAATGTCATTGGGC+CGG	+	Chr2:71282314-71282333	None:intergenic	40.0%
	CTGTGCTATATTAAGAGAGC+TGG	-	Chr2:71284483-71284502	MsG0280010547.01.T01:intron	40.0%
	GTTTCTGCAGCAGATTCATT+AGG	+	Chr2:71283842-71283861	None:intergenic	40.0%
	TCTTCATCTTTCTCCTCGTT+TGG	+	Chr2:71283691-71283710	None:intergenic	40.0%
	TGAGACTGTGAAGAAGGTAA+TGG	-	Chr2:71283717-71283736	MsG0280010547.01.T01:intron	40.0%
	TGTACATTGACGAAGTAACG+AGG	-	Chr2:71282943-71282962	MsG0280010547.01.T01:intron	40.0%
	TTCGAGTCCAGTCTGAAAAA+TGG	+	Chr2:71282859-71282878	None:intergenic	40.0%
	TTCGTCAATGTACAGCTGTT+GGG	+	Chr2:71282937-71282956	None:intergenic	40.0%
	TTCTGATGAGACTGTGAAGA+AGG	-	Chr2:71283711-71283730	MsG0280010547.01.T01:intron	40.0%
!	ATTGTCTGAAGCCAATGACA+AGG	-	Chr2:71283031-71283050	MsG0280010547.01.T01:intron	40.0%
!	TCGGTTTTCTTGGAAGAAAC+TGG	+	Chr2:71283866-71283885	None:intergenic	40.0%
!!	CTTGAAATGATGGATCTTGG+AGG	-	Chr2:71282972-71282991	MsG0280010547.01.T01:CDS	40.0%
!!	TTTCTCAGGATCGGTTTTCT+TGG	+	Chr2:71283876-71283895	None:intergenic	40.0%
!!!	CGGCCCAATGACATTTTTTT+GGG	-	Chr2:71282312-71282331	MsG0280010547.01.T01:CDS	40.0%
	AATAAGCCTGCTGCAGCTTT+AGG	+	Chr2:71283171-71283190	None:intergenic	45.0%
	ACAACCTTCACTTCTTCTGC+AGG	+	Chr2:71283664-71283683	None:intergenic	45.0%
	AGGTTGACAAGGGAAAGAAG+AGG	-	Chr2:71283816-71283835	MsG0280010547.01.T01:intron	45.0%
	ATAAGCCTGCTGCAGCTTTA+GGG	+	Chr2:71283170-71283189	None:intergenic	45.0%
	CAGTCTTTCCACCTTCCTTA+GGG	+	Chr2:71284712-71284731	None:intergenic	45.0%
	CTTCGTCAATGTACAGCTGT+TGG	+	Chr2:71282938-71282957	None:intergenic	45.0%
	GAAGGTTGTTGATCCAAACG+AGG	-	Chr2:71283675-71283694	MsG0280010547.01.T01:intron	45.0%
	TACAGCAATTCCTCACCCTA+AGG	-	Chr2:71284694-71284713	MsG0280010547.01.T01:intron	45.0%
	TCAGTCTTTCCACCTTCCTT+AGG	+	Chr2:71284713-71284732	None:intergenic	45.0%
!	TTTTCAGACTGGACTCGAAG+AGG	-	Chr2:71282860-71282879	MsG0280010547.01.T01:intron	45.0%
!!	AAATGATGGATCTTGGAGGC+TGG	-	Chr2:71282976-71282995	MsG0280010547.01.T01:CDS	45.0%
!!	AATGATGGATCTTGGAGGCT+GGG	-	Chr2:71282977-71282996	MsG0280010547.01.T01:CDS	45.0%
!!!	CCGGCCCAATGACATTTTTT+TGG	-	Chr2:71282311-71282330	MsG0280010547.01.T01:CDS	45.0%
	ATGTCATTGGGCCGGGTTAT+TGG	+	Chr2:71282306-71282325	None:intergenic	50.0%
	ATTCCTCACCCTAAGGAAGG+TGG	-	Chr2:71284701-71284720	MsG0280010547.01.T01:intron	50.0%
	CCTGAAGGCTAAACATGCCA+TGG	-	Chr2:71283534-71283553	MsG0280010547.01.T01:intron	50.0%
	GAAGCCATGGCATCTTCAAG+TGG	-	Chr2:71282395-71282414	MsG0280010547.01.T01:intron	50.0%
	GAAGGCTAAACATGCCATGG+AGG	-	Chr2:71283537-71283556	MsG0280010547.01.T01:intron	50.0%
	GATGCCAAATCTCCCAAGTC+TGG	-	Chr2:71284731-71284750	MsG0280010547.01.T01:CDS	50.0%
	GCAATTCCTCACCCTAAGGA+AGG	-	Chr2:71284698-71284717	MsG0280010547.01.T01:intron	50.0%
	GCATCTTCAAGTGGAGCAGT+AGG	-	Chr2:71282404-71282423	MsG0280010547.01.T01:intron	50.0%
	TCCTCCAGACTTGGGAGATT+TGG	+	Chr2:71284738-71284757	None:intergenic	50.0%
	TGCACCTGCAGAAGAAGTGA+AGG	-	Chr2:71283657-71283676	MsG0280010547.01.T01:intron	50.0%
	TGCTCCACTTGAAGATGCCA+TGG	+	Chr2:71282402-71282421	None:intergenic	50.0%
	TGTCATTGGGCCGGGTTATT+GGG	+	Chr2:71282305-71282324	None:intergenic	50.0%
	TTCCATTTCAGCGGAAGCCA+TGG	-	Chr2:71282382-71282401	MsG0280010547.01.T01:intron	50.0%
	TTCTGCAGGTGCAGCATTCA+TGG	+	Chr2:71283650-71283669	None:intergenic	50.0%
	TTTCCACCTTCCTTAGGGTG+AGG	+	Chr2:71284707-71284726	None:intergenic	50.0%
!	CCATGGCATGTTTAGCCTTC+AGG	+	Chr2:71283537-71283556	None:intergenic	50.0%
!	TAAGCCTGCTGCAGCTTTAG+GGG	+	Chr2:71283169-71283188	None:intergenic	50.0%
!!	TTTAGCACTGACGGGAGCTT+TGG	-	Chr2:71283070-71283089	MsG0280010547.01.T01:intron	50.0%
!!!	CTCACCGGTTTTCTCAGGAT+CGG	+	Chr2:71283885-71283904	None:intergenic	50.0%
!!!	TTGGTCTCACCGGTTTTCTC+AGG	+	Chr2:71283890-71283909	None:intergenic	50.0%
	AAGTCTGGAGGACAGGACAG+TGG	-	Chr2:71284746-71284765	MsG0280010547.01.T01:CDS	55.0%
	ACTGTCCTGTCCTCCAGACT+TGG	+	Chr2:71284747-71284766	None:intergenic	55.0%
	ATCTCCCAAGTCTGGAGGAC+AGG	-	Chr2:71284739-71284758	MsG0280010547.01.T01:CDS	55.0%
	ATGGAGGCTATACGTGCACG+TGG	-	Chr2:71283577-71283596	MsG0280010547.01.T01:intron	55.0%
	CGAGGAAGTGAACACCACTG+AGG	-	Chr2:71282797-71282816	MsG0280010547.01.T01:intron	55.0%
	CTGGGTCAGACCCAATAACC+CGG	-	Chr2:71282292-71282311	MsG0280010547.01.T01:CDS	55.0%
	CTGTCCTGTCCTCCAGACTT+GGG	+	Chr2:71284746-71284765	None:intergenic	55.0%
	GACTGGACTCGAAGAGGACA+AGG	-	Chr2:71282866-71282885	MsG0280010547.01.T01:intron	55.0%
	GCCAAATCTCCCAAGTCTGG+AGG	-	Chr2:71284734-71284753	MsG0280010547.01.T01:CDS	55.0%
	TCTTGGAGGCTGGGATGCTA+TGG	-	Chr2:71282986-71283005	MsG0280010547.01.T01:CDS	55.0%
	TGAACGTGCACGTGACATGG+AGG	-	Chr2:71283561-71283580	MsG0280010547.01.T01:intron	55.0%
	TGAGGCTGATCGTGACCTGA+AGG	-	Chr2:71283519-71283538	MsG0280010547.01.T01:intron	55.0%
	TGCCATGGCTTCCGCTGAAA+TGG	+	Chr2:71282387-71282406	None:intergenic	55.0%
!!	AAGCCTGCTGCAGCTTTAGG+GGG	+	Chr2:71283168-71283187	None:intergenic	55.0%
	ACGTGCAAGTGCAGCCTCCA+TGG	+	Chr2:71283626-71283645	None:intergenic	60.0%
	ACGTGCACGTTCAGCCTCCA+TGG	+	Chr2:71283554-71283573	None:intergenic	60.0%
	GCTGGAGGCTAAACGTGCCA+TGG	-	Chr2:71283606-71283625	MsG0280010547.01.T01:intron	60.0%
	GGAGGCTAAACGTGCCATGG+AGG	-	Chr2:71283609-71283628	MsG0280010547.01.T01:intron	60.0%
	GGCTGAACGTGCACGTGACA+TGG	-	Chr2:71283558-71283577	MsG0280010547.01.T01:intron	60.0%
!!	GCACTGACGGGAGCTTTGGA+AGG	-	Chr2:71283074-71283093	MsG0280010547.01.T01:intron	60.0%
	ACGTGCACGTGGACGTGAGC+TGG	-	Chr2:71283588-71283607	MsG0280010547.01.T01:intron	65.0%
	CCTCCCCCTAAAGCTGCAGC+AGG	-	Chr2:71283162-71283181	MsG0280010547.01.T01:CDS	65.0%
	TGCACGTGGACGTGAGCTGG+AGG	-	Chr2:71283591-71283610	MsG0280010547.01.T01:intron	65.0%
!!	CCTGCTGCAGCTTTAGGGGG+AGG	+	Chr2:71283165-71283184	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	71282192	71284832	71282192	ID=MsG0280010547.01;Name=MsG0280010547.01
Chr2	mRNA	71282192	71284832	71282192	ID=MsG0280010547.01.T01;Parent=MsG0280010547.01;Name=MsG0280010547.01.T01;_AED=0.40;_eAED=0.50;_QI=0\|0.33\|0.42\|0.85\|1\|1\|7\|0\|330
Chr2	exon	71284729	71284832	71284729	ID=MsG0280010547.01.T01:exon:6791;Parent=MsG0280010547.01.T01
Chr2	exon	71284603	71284631	71284603	ID=MsG0280010547.01.T01:exon:6790;Parent=MsG0280010547.01.T01
Chr2	exon	71283904	71284237	71283904	ID=MsG0280010547.01.T01:exon:6789;Parent=MsG0280010547.01.T01
Chr2	exon	71283292	71283508	71283292	ID=MsG0280010547.01.T01:exon:6788;Parent=MsG0280010547.01.T01
Chr2	exon	71283125	71283206	71283125	ID=MsG0280010547.01.T01:exon:6787;Parent=MsG0280010547.01.T01
Chr2	exon	71282956	71283024	71282956	ID=MsG0280010547.01.T01:exon:6786;Parent=MsG0280010547.01.T01
Chr2	exon	71282192	71282349	71282192	ID=MsG0280010547.01.T01:exon:6785;Parent=MsG0280010547.01.T01
Chr2	CDS	71284729	71284832	71284729	ID=MsG0280010547.01.T01:cds;Parent=MsG0280010547.01.T01
Chr2	CDS	71284603	71284631	71284603	ID=MsG0280010547.01.T01:cds;Parent=MsG0280010547.01.T01
Chr2	CDS	71283904	71284237	71283904	ID=MsG0280010547.01.T01:cds;Parent=MsG0280010547.01.T01
Chr2	CDS	71283292	71283508	71283292	ID=MsG0280010547.01.T01:cds;Parent=MsG0280010547.01.T01
Chr2	CDS	71283125	71283206	71283125	ID=MsG0280010547.01.T01:cds;Parent=MsG0280010547.01.T01
Chr2	CDS	71282956	71283024	71282956	ID=MsG0280010547.01.T01:cds;Parent=MsG0280010547.01.T01
Chr2	CDS	71282192	71282349	71282192	ID=MsG0280010547.01.T01:cds;Parent=MsG0280010547.01.T01

Gene Sequence

>MsG0280010547.01.T01

ATGCGTAGGGGCATTTTGGTCTTTTACTTTGGGAATGAGCAAAACGTAAATAGCCGAATTCTTTGGGTAAAGAGCAGAATTCTTAAACAAGATGACATTACTGGCGGAAGCCATGGCATCTTCAAGTGGAGCATGAATACTATCGAGGAAGTGAACACCACTGAGGATCGTTTGATAAATCTTCTTGAGGCTCAAGCAATTTCCATTTTTCAGACTGGACTCGAAGAGGACAAGGAACATCCTTATCCTGAACGTGATTTTTCAAAGTTGACTGTTAGGACCCAACAGCTGTACATTGACGAAGTAACGAGGATTGTTCTTGAAATGATGGATCTTGGAGGCTGGGATGCTATGGCGCAAAAATATGAAAAGTACAGATTGTCTGAAGCCAATGACAAGGCTGTTTTCATTGAAATTTTAGCACTGACGGGAGCTTTGGAAGGCGACGAGCTTTATCAGAAGATTAGGCTTGAGGCTGATCGTGACCTGAAGGCTAAACATGCCATGGAGGCTGAACGTGCACGTGACATGGAGGCTATACGTGCACGTGGACGTGAGCTGGAGGCTAAACGTGCCATGGAGGCTGCACTTGCACGTGCCATGAATGCTGCACCTGCAGAAGAAGTGAAGGTTGTTGATCCAAACGAGGAGAAAGATGAAGATTCTGATGAGACTGTGAAGAAGGTTGACAAGGGAAAGAAGAGGCCTAATGAATCTGCTGCAGAAACTCCAGTTTCTTCCAAGAAAACCGATCCTGAGAAAACCGTGTTAAATCCATTTGCCAAGTTCTTAAGTTATTGTGTTGTTGATAGATCATGGATTGATGTTTGTGTTTATGGTAAGAAAGCTGGACATACAGCAATTCCTCACCCTAAGGAAGGTGGAAAGACTGATGCCAAATCTCCCAAGTCTGGAGGACAGGACAGTGGTTGCAGCAAGTATGCTTTTAACAAAACTCGATGCATATGTTTATTACTTTTAGATGGGTTGTGA

Protein sequence

>MsG0280010547.01.T01

MRRGILVFYFGNEQNVNSRILWVKSRILKQDDITGGSHGIFKWSMNTIEEVNTTEDRLINLLEAQAISIFQTGLEEDKEHPYPERDFSKLTVRTQQLYIDEVTRIVLEMMDLGGWDAMAQKYEKYRLSEANDKAVFIEILALTGALEGDELYQKIRLEADRDLKAKHAMEAERARDMEAIRARGRELEAKRAMEAALARAMNAAPAEEVKVVDPNEEKDEDSDETVKKVDKGKKRPNESAAETPVSSKKTDPEKTVLNPFAKFLSYCVVDRSWIDVCVYGKKAGHTAIPHPKEGGKTDAKSPKSGGQDSGCSKYAFNKTRCICLLLLDGL*