AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034122.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034122.01.T01 MTR_6g463260 96.816 534 10 4 1 529 1 532 0.0 1051
MsG0680034122.01.T01 MTR_5g011400 53.722 497 224 4 31 524 1 494 0.0 555
MsG0680034122.01.T01 MTR_4g097540 45.561 428 218 6 116 529 16 442 2.23e-142 419
MsG0680034122.01.T01 MTR_6g091760 44.471 425 230 3 102 522 12 434 3.01e-141 415
MsG0680034122.01.T01 MTR_8g101750 44.340 424 224 4 100 519 8 423 3.47e-138 407
MsG0680034122.01.T01 MTR_3g103550 44.988 429 227 3 104 524 2 429 3.51e-137 406
MsG0680034122.01.T01 MTR_5g015020 44.153 419 221 6 116 522 16 433 2.03e-136 404
MsG0680034122.01.T01 MTR_8g098930 41.647 425 241 3 104 522 12 435 6.13e-131 390
MsG0680034122.01.T01 MTR_8g028600 41.299 431 249 2 95 522 2 431 4.36e-127 380
MsG0680034122.01.T01 MTR_7g079080 41.135 423 244 3 104 522 11 432 2.23e-123 370
MsG0680034122.01.T01 MTR_8g101820 41.038 424 225 6 100 519 8 410 4.27e-122 365
MsG0680034122.01.T01 MTR_7g079080 41.896 327 186 2 200 522 1 327 6.81e-97 299
MsG0680034122.01.T01 MTR_5g033230 24.352 386 239 13 173 520 93 463 8.33e-20 92.8
MsG0680034122.01.T01 MTR_5g033230 24.242 363 221 11 136 458 47 395 8.50e-18 86.7
MsG0680034122.01.T01 MTR_2g090730 43.956 91 46 2 158 248 13 98 5.97e-16 77.0
MsG0680034122.01.T01 MTR_8g023140 20.994 362 256 13 183 518 154 511 1.78e-12 70.1
MsG0680034122.01.T01 MTR_7g106830 20.811 370 262 12 166 522 113 464 7.14e-12 68.2
MsG0680034122.01.T01 MTR_2g090615 28.365 208 118 6 183 380 81 267 1.78e-11 66.6
MsG0680034122.01.T01 MTR_8g091280 21.429 336 240 10 166 490 115 437 2.10e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034122.01.T01 AT5G51690 60.279 501 189 3 31 527 1 495 0.0 635
MsG0680034122.01.T01 AT1G62960 52.799 536 211 8 29 529 29 557 0.0 558
MsG0680034122.01.T01 AT5G51690 61.081 370 141 1 161 527 3 372 7.50e-174 495
MsG0680034122.01.T01 AT4G37770 46.838 427 219 3 104 523 4 429 5.34e-144 423
MsG0680034122.01.T01 AT2G22810 45.057 435 230 4 102 528 2 435 5.32e-141 415
MsG0680034122.01.T01 AT3G49700 46.065 432 225 3 103 527 3 433 2.22e-139 411
MsG0680034122.01.T01 AT5G65800 44.952 416 221 3 116 524 16 430 8.90e-136 402
MsG0680034122.01.T01 AT4G26200 43.681 451 234 6 81 523 4 442 2.73e-134 397
MsG0680034122.01.T01 AT4G08040 43.826 413 227 3 116 524 14 425 6.34e-133 394
MsG0680034122.01.T01 AT4G11280 42.619 420 236 3 104 519 15 433 4.89e-130 388
MsG0680034122.01.T01 AT1G01480 41.299 431 245 4 104 527 12 441 1.25e-124 374
MsG0680034122.01.T01 AT3G61510 39.352 432 254 4 95 522 2 429 4.21e-122 367
MsG0680034122.01.T01 AT1G01480 41.194 335 190 3 200 527 1 335 2.79e-96 298
MsG0680034122.01.T01 AT1G23310 24.868 378 247 15 173 520 93 463 1.98e-20 94.7
MsG0680034122.01.T01 AT1G70580 25.729 377 245 15 173 520 93 463 2.07e-20 94.7
MsG0680034122.01.T01 AT1G70580 25.729 377 245 15 173 520 93 463 2.07e-20 94.7
MsG0680034122.01.T01 AT1G70580 25.729 377 245 15 173 520 93 463 2.07e-20 94.7
MsG0680034122.01.T01 AT1G70580 25.729 377 245 15 173 520 93 463 2.07e-20 94.7
MsG0680034122.01.T01 AT1G23310 30.000 180 120 4 173 348 93 270 3.49e-19 90.5
MsG0680034122.01.T01 AT1G72330 22.000 350 225 13 211 524 196 533 1.55e-16 82.8
MsG0680034122.01.T01 AT1G17290 21.693 378 246 13 183 524 173 536 8.09e-16 80.9
MsG0680034122.01.T01 AT1G72330 28.402 169 105 6 211 374 196 353 9.66e-16 80.1
MsG0680034122.01.T01 AT1G72330 21.488 363 224 13 211 524 196 546 4.05e-15 78.6
MsG0680034122.01.T01 AT5G36160 27.941 204 116 6 183 376 80 262 6.97e-13 70.9
MsG0680034122.01.T01 AT2G22250 21.316 380 258 13 167 528 116 472 2.93e-12 69.3
MsG0680034122.01.T01 AT2G22250 21.316 380 258 13 167 528 116 472 2.93e-12 69.3
MsG0680034122.01.T01 AT2G22250 20.955 377 263 12 167 528 69 425 3.38e-12 68.9

Find 131 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAGGACGACGTCGTTTA+AGG 0.204925 6:-81106626 None:intergenic
GATATCAATTTGAGTATAAA+TGG 0.236641 6:+81108274 MsG0680034122.01.T01:CDS
AGAAGACTGAAAAGCATTTC+TGG 0.240255 6:-81111258 None:intergenic
AGAAAGGAGAACTTGAATTA+TGG 0.243969 6:+81111736 MsG0680034122.01.T01:CDS
AGAAAGTAGAAGAGTGATAA+AGG 0.247026 6:-81106594 None:intergenic
TTCACACAACAAAACTGTTT+TGG 0.255365 6:+81111473 MsG0680034122.01.T01:CDS
TCAAAAGACCTTTCGATTGC+TGG 0.288659 6:+81111429 MsG0680034122.01.T01:CDS
AGCACACTTGATTCCTAGTT+TGG 0.291076 6:-81111652 None:intergenic
TTGTGTGGTGCAGTTGAGTT+TGG 0.314151 6:+81108195 MsG0680034122.01.T01:intron
TTCCGATAAACGATTCATTC+AGG 0.315188 6:+81111566 MsG0680034122.01.T01:CDS
AAGAAGAAGGTGGTTGAGAT+TGG 0.316071 6:-81106476 None:intergenic
GTCGATTACCCTGGATAATA+AGG 0.320746 6:-81110805 None:intergenic
AGAATTTGACCCGTCAAATA+TGG 0.338798 6:+81110699 MsG0680034122.01.T01:CDS
CCTCTTCAAGCCGTAGTTCA+AGG 0.345242 6:+81106540 MsG0680034122.01.T01:CDS
GCGCCTTATCAATCATTTCA+TGG 0.351831 6:+81108301 MsG0680034122.01.T01:CDS
TTCCTGAATGAATCGTTTAT+CGG 0.368687 6:-81111568 None:intergenic
GAAAGGAGAACTTGAATTAT+GGG 0.372458 6:+81111737 MsG0680034122.01.T01:CDS
AACGATAGTATCTCAATTGC+AGG 0.378929 6:-81110742 None:intergenic
GAAAGTAGAAGAGTGATAAA+GGG 0.384830 6:-81106593 None:intergenic
AGTTCTCCTTTCTCGCTATA+AGG 0.388101 6:-81111726 None:intergenic
GCACCCGTCTTATTCTATTT+CGG 0.391124 6:-81111605 None:intergenic
AAATCCCTCTAGTTATTGAT+AGG 0.392176 6:+81111865 MsG0680034122.01.T01:CDS
AGAAGAAGGTGGTTGAGATT+GGG 0.407137 6:-81106475 None:intergenic
CTCTAGTTATTGATAGGATT+CGG 0.409149 6:+81111871 MsG0680034122.01.T01:CDS
CATGTTAAGTTTAATCCTCA+TGG 0.411093 6:+81106828 MsG0680034122.01.T01:CDS
CTTGACTAAATGCTTGTTCA+AGG 0.411999 6:-81111161 None:intergenic
GTCCCTACACCTTATTATCC+AGG 0.416731 6:+81110796 MsG0680034122.01.T01:CDS
AGGAAAGGAGGAGAAGAAGA+AGG 0.421695 6:-81106347 None:intergenic
ATTGCTGACGAAGTATTTGC+AGG 0.422387 6:+81111312 MsG0680034122.01.T01:CDS
GGAAGAAGCGTAGGAGAAGA+AGG 0.426362 6:-81106666 None:intergenic
GATGATTCTCTTTATTATGT+TGG 0.428695 6:+81106777 MsG0680034122.01.T01:CDS
AGGAACGATGAGTTTCATTC+CGG 0.428810 6:-81106520 None:intergenic
TTGGGTTTGGGTCATTGACC+CGG 0.433153 6:-81106427 None:intergenic
ACCGTTGCGACCTTGAACTA+CGG 0.437014 6:-81106550 None:intergenic
ATCAGACCTTATAGCGAGAA+AGG 0.438192 6:+81111720 MsG0680034122.01.T01:CDS
GCAGCGCCGGTATGTTCTGT+TGG 0.448478 6:+81111679 MsG0680034122.01.T01:CDS
TCATCCTCTCCCTCTCGAAC+CGG 0.457560 6:+81106501 MsG0680034122.01.T01:CDS
CAGCGCCGGTATGTTCTGTT+GGG 0.459303 6:+81111680 MsG0680034122.01.T01:CDS
AATCCATGAAATGATTGATA+AGG 0.464480 6:-81108304 None:intergenic
ATGCAATGGCAAGCCGATCC+AGG 0.473529 6:-81111795 None:intergenic
GAACTTGGAGGGATCAATGA+TGG 0.475995 6:+81108243 MsG0680034122.01.T01:CDS
GCTAAGATAAATATAACTCC+TGG 0.479435 6:+81111777 MsG0680034122.01.T01:CDS
CCGTCTTATTCTATTTCGGT+TGG 0.485045 6:-81111601 None:intergenic
AGTGAGTGAGAGAGAAGGAA+AGG 0.485261 6:-81106367 None:intergenic
GGTGTCAGAATATTGCCAAC+AGG 0.485404 6:-81111237 None:intergenic
GGATTAAACTTAACATGATA+AGG 0.486687 6:-81106822 None:intergenic
GATTGGTATGGTGTGGTTGA+AGG 0.487037 6:-81106395 None:intergenic
TCAGTACTTCGACAGTGAAC+AGG 0.488659 6:-81111114 None:intergenic
ATATTGCCAACAGGATTTGA+AGG 0.489937 6:-81111228 None:intergenic
GTATTGTTATTATTATTCTC+AGG 0.491598 6:-81106642 None:intergenic
CATTCCGGTTCGAGAGGGAG+AGG 0.492695 6:-81106505 None:intergenic
ACGGGTGCACAATGAGTTTG+TGG 0.494025 6:+81111620 MsG0680034122.01.T01:CDS
GGAAAGGAGGAGAAGAAGAA+GGG 0.495338 6:-81106346 None:intergenic
AGAGAGAAGGAAAGGAAAGG+AGG 0.508592 6:-81106359 None:intergenic
AAGAAGCGTAGGAGAAGAAG+GGG 0.509079 6:-81106664 None:intergenic
AGGGACGTAAGATGGCGTCC+AGG 0.510730 6:+81111078 MsG0680034122.01.T01:intron
GATGTTAGTACCATATTTGA+CGG 0.511266 6:-81110709 None:intergenic
GAAGAACGAGGAAGAAGCGT+AGG 0.511504 6:-81106675 None:intergenic
TCAAATATGGTACTAACATC+GGG 0.513697 6:+81110712 MsG0680034122.01.T01:CDS
ATTGGTATGGTGTGGTTGAA+GGG 0.514418 6:-81106394 None:intergenic
ATGTTAAGTTTAATCCTCAT+GGG 0.515359 6:+81106829 MsG0680034122.01.T01:CDS
GTTTGGATTTGATTGAGAAA+TGG 0.516654 6:+81108212 MsG0680034122.01.T01:CDS
GAAATGGTTGGTGAAGAACT+TGG 0.517138 6:+81108228 MsG0680034122.01.T01:CDS
AACTTGGAGGGATCAATGAT+GGG 0.518854 6:+81108244 MsG0680034122.01.T01:CDS
TGAGATACTATCGTTCTGCT+TGG 0.519831 6:+81110750 MsG0680034122.01.T01:CDS
CCTCATGGGATTATTCAGCT+TGG 0.520803 6:+81106843 MsG0680034122.01.T01:CDS
CGTTCGAATTTATCCTCTCG+TGG 0.523500 6:+81106702 MsG0680034122.01.T01:CDS
GTGGATTGTTTAACCAAACT+AGG 0.523731 6:+81111639 MsG0680034122.01.T01:CDS
GTATTTGCAGGCTCCACGTA+CGG 0.524369 6:+81111324 MsG0680034122.01.T01:CDS
GGAGAGGATGAAGAAGAAGA+AGG 0.538233 6:-81106489 None:intergenic
GCTTTGACAGGGACGTAAGA+TGG 0.539978 6:+81111070 MsG0680034122.01.T01:intron
GATAAATATAACTCCTGGAT+CGG 0.540003 6:+81111782 MsG0680034122.01.T01:CDS
TCGATTGCTGGATTTAGAGT+CGG 0.540691 6:+81111441 MsG0680034122.01.T01:CDS
ACCATCCTGGTTCTATGCAA+TGG 0.546338 6:-81111809 None:intergenic
TGGGTTTGGGTCATTGACCC+GGG 0.546981 6:-81106426 None:intergenic
GCTTGGTTTGTCTGATAACA+AGG 0.548963 6:+81106860 MsG0680034122.01.T01:CDS
GATAATAAGGTGTAGGGACA+AGG 0.549163 6:-81110792 None:intergenic
TTTAGTGGATTGGTATGGTG+TGG 0.553051 6:-81106402 None:intergenic
CTCTAAATCCAGCAATCGAA+AGG 0.554066 6:-81111437 None:intergenic
GAGTTTCATTCCGGTTCGAG+AGG 0.556125 6:-81106511 None:intergenic
TATTGCCAACAGGATTTGAA+GGG 0.556392 6:-81111227 None:intergenic
GAAGAAGCGTAGGAGAAGAA+GGG 0.557441 6:-81106665 None:intergenic
AAGGAGGAGAAGAAGAAGGG+AGG 0.559626 6:-81106343 None:intergenic
GTCAAATATGGTACTAACAT+CGG 0.563753 6:+81110711 MsG0680034122.01.T01:CDS
ACAGGTATTAAGTCTATCCC+TGG 0.566102 6:-81111096 None:intergenic
TCCCTACACCTTATTATCCA+GGG 0.567075 6:+81110797 MsG0680034122.01.T01:CDS
GGATTTGATTGAGAAATGGT+TGG 0.569337 6:+81108216 MsG0680034122.01.T01:CDS
AAGTGTGCTAAGAGCAGCGC+CGG 0.573828 6:+81111666 MsG0680034122.01.T01:CDS
GAAGTAACTAACCTCTGTGT+TGG 0.575820 6:-81111537 None:intergenic
GCCATTGCATAGAACCAGGA+TGG 0.576139 6:+81111808 MsG0680034122.01.T01:CDS
GAATGAGTGAGTGAGAGAGA+AGG 0.576415 6:-81106372 None:intergenic
ATATTCTGAATCGAGAACTT+CGG 0.576552 6:-81111370 None:intergenic
TTCTGTTGGGCTGATATGAG+TGG 0.577234 6:+81111693 MsG0680034122.01.T01:CDS
ATGTTAGTACCATATTTGAC+GGG 0.579929 6:-81110708 None:intergenic
CATACCAATCCACTAAAACC+CGG 0.582054 6:+81106408 MsG0680034122.01.T01:five_prime_UTR
AAACTCCTCGCTTCCGTACG+TGG 0.582162 6:-81111337 None:intergenic
ATGGTTGGTGAAGAACTTGG+AGG 0.582724 6:+81108231 MsG0680034122.01.T01:CDS
ACCCTGGATAATAAGGTGTA+GGG 0.583042 6:-81110798 None:intergenic
CGAATCCTATCAATAACTAG+AGG 0.584201 6:-81111870 None:intergenic
TCGTTCTGCTTGGCAGACCA+TGG 0.585867 6:+81110760 MsG0680034122.01.T01:CDS
AGCCGCGTTCATATAGTGTA+CGG 0.586505 6:+81111402 MsG0680034122.01.T01:CDS
AAACGAGGAGTCAAAGTTCG+CGG 0.587306 6:+81111189 MsG0680034122.01.T01:CDS
TACCCTGGATAATAAGGTGT+AGG 0.592046 6:-81110799 None:intergenic
CAACCGAAATAGAATAAGAC+GGG 0.592241 6:+81111602 MsG0680034122.01.T01:CDS
AAACAAATACGAAACCATCC+TGG 0.595378 6:-81111822 None:intergenic
GAGGATGAAGAAGAAGAAGG+TGG 0.595831 6:-81106486 None:intergenic
GGGACGTAAGATGGCGTCCA+GGG 0.596829 6:+81111079 MsG0680034122.01.T01:intron
TTGACTAAATGCTTGTTCAA+GGG 0.597175 6:-81111160 None:intergenic
ATACCAATCCACTAAAACCC+GGG 0.599312 6:+81106409 MsG0680034122.01.T01:five_prime_UTR
TCGAACCCTTCAAATCCTGT+TGG 0.599882 6:+81111222 MsG0680034122.01.T01:CDS
GTGAGAGAGAAGGAAAGGAA+AGG 0.601729 6:-81106362 None:intergenic
GGACAAGGAATGCATTTCCA+TGG 0.601989 6:-81110777 None:intergenic
GGAGGAAGAAACAAGTGTGA+TGG 0.605618 6:-81106325 None:intergenic
AGTTTCATTCCGGTTCGAGA+GGG 0.606450 6:-81106510 None:intergenic
GCTTGCCATTGCATAGAACC+AGG 0.608825 6:+81111804 MsG0680034122.01.T01:CDS
GCCGTAGTTCAAGGTCGCAA+CGG 0.614336 6:+81106549 MsG0680034122.01.T01:CDS
TTTATGCATCAGGTTATGGG+AGG 0.621158 6:+81110670 MsG0680034122.01.T01:CDS
AGGCTCCACGTACGGAAGCG+AGG 0.623216 6:+81111332 MsG0680034122.01.T01:CDS
CCTTGAACTACGGCTTGAAG+AGG 0.628674 6:-81106540 None:intergenic
CCAACCGAAATAGAATAAGA+CGG 0.633080 6:+81111601 MsG0680034122.01.T01:CDS
TGGTTGGTGAAGAACTTGGA+GGG 0.633885 6:+81108232 MsG0680034122.01.T01:CDS
ATCAGCCCAACAGAACATAC+CGG 0.634233 6:-81111685 None:intergenic
GAATCCTATCAATAACTAGA+GGG 0.646614 6:-81111869 None:intergenic
TTTAGTCAAGCAAGAAAACG+AGG 0.661177 6:+81111174 MsG0680034122.01.T01:CDS
ACTTGGAGGGATCAATGATG+GGG 0.673771 6:+81108245 MsG0680034122.01.T01:CDS
ATAAAGGGATTAAACTACCG+AGG 0.687862 6:-81106578 None:intergenic
CCAAGCTGAATAATCCCATG+AGG 0.701633 6:-81106843 None:intergenic
ACTCGAAATAGAGCCACGAG+AGG 0.726731 6:-81106715 None:intergenic
GGCCGTACACTATATGAACG+CGG 0.742883 6:-81111404 None:intergenic
TTCGAACGAGAAGAAGAACG+AGG 0.751950 6:-81106687 None:intergenic
CTATATCTGCACCAACACAG+AGG 0.756871 6:+81111526 MsG0680034122.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTATAAAAACTATTTATA+AGG + Chr6:81110959-81110978 MsG0680034122.01.T01:intron 10.0%
!!! TTGTTTAAAAAAATGTTTTT+CGG + Chr6:81106962-81106981 MsG0680034122.01.T01:intron 10.0%
!!! TTTAAGATGAATAATTTTAT+AGG + Chr6:81109576-81109595 MsG0680034122.01.T01:intron 10.0%
!!! TTTTGTTTTGTTTTAATTTT+GGG + Chr6:81108163-81108182 MsG0680034122.01.T01:intron 10.0%
!!! TTTTTGTTTTGTTTTAATTT+TGG + Chr6:81108162-81108181 MsG0680034122.01.T01:intron 10.0%
!! AAAATATCAACAACAAATTT+GGG - Chr6:81107449-81107468 None:intergenic 15.0%
!! AAAATTGTAAATGACTAAAT+TGG - Chr6:81107402-81107421 None:intergenic 15.0%
!! AATAAAATTAGATAGAAAGT+TGG + Chr6:81110128-81110147 MsG0680034122.01.T01:intron 15.0%
!! TGTTATCATTAAATATTAAG+TGG + Chr6:81109266-81109285 MsG0680034122.01.T01:intron 15.0%
!!! AAAAACACTTTGAAATATTT+TGG - Chr6:81107114-81107133 None:intergenic 15.0%
!!! ATTTTATGTTAAGACTAAAT+TGG + Chr6:81108060-81108079 MsG0680034122.01.T01:intron 15.0%
!!! TAACTCTAAAATTAAAATGT+CGG - Chr6:81110032-81110051 None:intergenic 15.0%
!!! TGATGATGATTTTTAAATTT+TGG + Chr6:81109459-81109478 MsG0680034122.01.T01:intron 15.0%
!!! TTTTATGTTAAGACTAAATT+GGG + Chr6:81108061-81108080 MsG0680034122.01.T01:intron 15.0%
!! AATAAAATGTTGTCAAATAG+CGG - Chr6:81109094-81109113 None:intergenic 20.0%
!! AATTATTCATCTTAAACTTC+TGG - Chr6:81109572-81109591 None:intergenic 20.0%
!! ACAAAATTGCTAAAACTTAT+GGG - Chr6:81109363-81109382 None:intergenic 20.0%
!! ACAATATTAGAAAAAGAGTT+GGG + Chr6:81108651-81108670 MsG0680034122.01.T01:intron 20.0%
!! AGAGATTAATGAGTTATATA+GGG + Chr6:81108845-81108864 MsG0680034122.01.T01:intron 20.0%
!! GAAAATATCAACAACAAATT+TGG - Chr6:81107450-81107469 None:intergenic 20.0%
!! GATATCAATTTGAGTATAAA+TGG + Chr6:81108274-81108293 MsG0680034122.01.T01:CDS 20.0%
!! TAATTAAAATTAAGCACAAG+AGG - Chr6:81109417-81109436 None:intergenic 20.0%
!! TACAAAATTGCTAAAACTTA+TGG - Chr6:81109364-81109383 None:intergenic 20.0%
!! TAGAGATTAATGAGTTATAT+AGG + Chr6:81108844-81108863 MsG0680034122.01.T01:intron 20.0%
!! TGATACATAATAAGACATTA+TGG + Chr6:81110455-81110474 MsG0680034122.01.T01:intron 20.0%
!! TGATATATCATTGAACATTA+TGG + Chr6:81108871-81108890 MsG0680034122.01.T01:intron 20.0%
!! TTATTCTAAATAGTGTATCA+CGG + Chr6:81109109-81109128 MsG0680034122.01.T01:intron 20.0%
!!! AACTAAAGGTTAAAGTATTA+AGG + Chr6:81108818-81108837 MsG0680034122.01.T01:intron 20.0%
!!! GTATTGTTATTATTATTCTC+AGG - Chr6:81106645-81106664 None:intergenic 20.0%
!!! TAAACTATTGATTCCTATTT+GGG + Chr6:81110838-81110857 MsG0680034122.01.T01:intron 20.0%
!!! TAACTAAACTGCTTATTTTA+AGG + Chr6:81109177-81109196 MsG0680034122.01.T01:intron 20.0%
!!! TCTGTTTTGTTTTATTAGAA+TGG + Chr6:81107490-81107509 MsG0680034122.01.T01:intron 20.0%
!!! TGAATTTTGTTGATTTAGTT+AGG + Chr6:81110579-81110598 MsG0680034122.01.T01:intron 20.0%
!!! TTAAACTATTGATTCCTATT+TGG + Chr6:81110837-81110856 MsG0680034122.01.T01:intron 20.0%
!!! TTAATTTTGTTACAACTGAT+GGG + Chr6:81110078-81110097 MsG0680034122.01.T01:intron 20.0%
!!! TTAGTCATTTACAATTTTCT+GGG + Chr6:81107404-81107423 MsG0680034122.01.T01:intron 20.0%
!!! TTGTTGATATTTTCATAATG+AGG + Chr6:81107456-81107475 MsG0680034122.01.T01:intron 20.0%
!!! TTTAACCTTTAGTTTTTTCT+AGG - Chr6:81108812-81108831 None:intergenic 20.0%
!!! TTTAGTCATTTACAATTTTC+TGG + Chr6:81107403-81107422 MsG0680034122.01.T01:intron 20.0%
!!! TTTTGTTTTATTAGAATGGA+GGG + Chr6:81107494-81107513 MsG0680034122.01.T01:intron 20.0%
! AAAAACCTCCAGAAATATTT+CGG - Chr6:81107008-81107027 None:intergenic 25.0%
! AAAAATTGTAAGCACCAATT+TGG - Chr6:81107888-81107907 None:intergenic 25.0%
! AAAATTGTAAGCACCAATTT+GGG - Chr6:81107887-81107906 None:intergenic 25.0%
! AAATGTTTATGTTGTTGCAT+AGG + Chr6:81107215-81107234 MsG0680034122.01.T01:intron 25.0%
! AATCCATGAAATGATTGATA+AGG - Chr6:81108307-81108326 None:intergenic 25.0%
! AATGTTTATGTTGTTGCATA+GGG + Chr6:81107216-81107235 MsG0680034122.01.T01:intron 25.0%
! ACAAGAGTAAATACACAATT+TGG - Chr6:81108108-81108127 None:intergenic 25.0%
! AGATCAAATAAAACCCAAAT+AGG - Chr6:81110854-81110873 None:intergenic 25.0%
! ATCAACAACACTTAAATAAG+TGG - Chr6:81109004-81109023 None:intergenic 25.0%
! ATGTTAAGTTTAATCCTCAT+GGG + Chr6:81106829-81106848 MsG0680034122.01.T01:CDS 25.0%
! ATTTATAATTCTATCACGTC+TGG - Chr6:81108630-81108649 None:intergenic 25.0%
! CAATATTAGAAAAAGAGTTG+GGG + Chr6:81108652-81108671 MsG0680034122.01.T01:intron 25.0%
! CATTTCTCTTAAAAGAAGTT+AGG + Chr6:81110887-81110906 MsG0680034122.01.T01:intron 25.0%
! GACAATATTAGAAAAAGAGT+TGG + Chr6:81108650-81108669 MsG0680034122.01.T01:intron 25.0%
! GATGATTCTCTTTATTATGT+TGG + Chr6:81106777-81106796 MsG0680034122.01.T01:CDS 25.0%
! GGAAATATGGATATTATTAG+AGG - Chr6:81109627-81109646 None:intergenic 25.0%
! GGATTAAACTTAACATGATA+AGG - Chr6:81106825-81106844 None:intergenic 25.0%
! TATATCATTGAACATTATGG+TGG + Chr6:81108874-81108893 MsG0680034122.01.T01:intron 25.0%
! TGTCATGACATGAATTAATT+TGG + Chr6:81108032-81108051 MsG0680034122.01.T01:intron 25.0%
! TTAACAGACAAACAAAACAA+CGG - Chr6:81110610-81110629 None:intergenic 25.0%
! TTATAGGATTTCTAACATTC+TGG + Chr6:81109592-81109611 MsG0680034122.01.T01:intron 25.0%
! TTATTATACCGAAGACAAAT+TGG + Chr6:81107961-81107980 MsG0680034122.01.T01:intron 25.0%
! TTGTCAAATAGCTACTATTA+TGG + Chr6:81110378-81110397 MsG0680034122.01.T01:intron 25.0%
! TTTGTTTGTCTGTTAAACTT+TGG + Chr6:81110614-81110633 MsG0680034122.01.T01:intron 25.0%
!! ATAAAACCACATTTTCATAC+TGG - Chr6:81107531-81107550 None:intergenic 25.0%
!! GTTAATTTTGTTACAACTGA+TGG + Chr6:81110077-81110096 MsG0680034122.01.T01:intron 25.0%
!! TAAAACCACATTTTCATACT+GGG - Chr6:81107530-81107549 None:intergenic 25.0%
!! TAATTTTGTTACAACTGATG+GGG + Chr6:81110079-81110098 MsG0680034122.01.T01:intron 25.0%
!! TAGTCATTTACAATTTTCTG+GGG + Chr6:81107405-81107424 MsG0680034122.01.T01:intron 25.0%
!! TATTTAAGTGTTGTTGATCT+TGG + Chr6:81109006-81109025 MsG0680034122.01.T01:intron 25.0%
!! TCTAAAATCCGAAATATTTC+TGG + Chr6:81106997-81107016 MsG0680034122.01.T01:intron 25.0%
!! TTTTATCTTTGAGTGTCTAA+GGG + Chr6:81107545-81107564 MsG0680034122.01.T01:intron 25.0%
!! TTTTGAATAAAGACCCAAAT+TGG + Chr6:81107871-81107890 MsG0680034122.01.T01:intron 25.0%
!!! AAATGTTTTTCGGTCTTATT+TGG + Chr6:81106972-81106991 MsG0680034122.01.T01:intron 25.0%
!!! ACTCTTGTCTTTTACTTTTA+TGG + Chr6:81108120-81108139 MsG0680034122.01.T01:intron 25.0%
!!! ATATTTCAAAGTGTTTTTCG+AGG + Chr6:81107116-81107135 MsG0680034122.01.T01:intron 25.0%
!!! CTCTTGTCTTTTACTTTTAT+GGG + Chr6:81108121-81108140 MsG0680034122.01.T01:intron 25.0%
!!! GTTTTGTTTTATTAGAATGG+AGG + Chr6:81107493-81107512 MsG0680034122.01.T01:intron 25.0%
!!! TGAAAATCTGCTCATTTTTT+TGG - Chr6:81111505-81111524 None:intergenic 25.0%
!!! TGTGTTGATATTTAGCTTTT+AGG + Chr6:81109219-81109238 MsG0680034122.01.T01:intron 25.0%
AAAATTGTGAGGGATCAAAA+TGG + Chr6:81107830-81107849 MsG0680034122.01.T01:intron 30.0%
AAATCCCTCTAGTTATTGAT+AGG + Chr6:81111865-81111884 MsG0680034122.01.T01:CDS 30.0%
AAATTGTGAGGGATCAAAAT+GGG + Chr6:81107831-81107850 MsG0680034122.01.T01:intron 30.0%
AATAAGGAGAGTAGATAAGA+TGG + Chr6:81108754-81108773 MsG0680034122.01.T01:intron 30.0%
ACAACTATGTATGGGAAATA+TGG - Chr6:81109640-81109659 None:intergenic 30.0%
ACAAGTCATTCTTGAAAAGA+TGG + Chr6:81110155-81110174 MsG0680034122.01.T01:intron 30.0%
ACACAAAACAAGTTAGGATT+AGG + Chr6:81110105-81110124 MsG0680034122.01.T01:intron 30.0%
ACTTCTGGTATAACTGATTA+AGG - Chr6:81109557-81109576 None:intergenic 30.0%
AGAAAGGAGAACTTGAATTA+TGG + Chr6:81111736-81111755 MsG0680034122.01.T01:CDS 30.0%
AGAAAGTAGAAGAGTGATAA+AGG - Chr6:81106597-81106616 None:intergenic 30.0%
ATATAACCTTGTTAGCTGAA+TGG + Chr6:81109843-81109862 MsG0680034122.01.T01:intron 30.0%
ATATTCTGAATCGAGAACTT+CGG - Chr6:81111373-81111392 None:intergenic 30.0%
ATGTTAGTACCATATTTGAC+GGG - Chr6:81110711-81110730 None:intergenic 30.0%
CATAAGAGTGGAAAAAGTAA+CGG - Chr6:81107070-81107089 None:intergenic 30.0%
CATGTTAAGTTTAATCCTCA+TGG + Chr6:81106828-81106847 MsG0680034122.01.T01:CDS 30.0%
CTCTAGTTATTGATAGGATT+CGG + Chr6:81111871-81111890 MsG0680034122.01.T01:CDS 30.0%
GAAAGGAGAACTTGAATTAT+GGG + Chr6:81111737-81111756 MsG0680034122.01.T01:CDS 30.0%
GAAAGTAGAAGAGTGATAAA+GGG - Chr6:81106596-81106615 None:intergenic 30.0%
GAAGACCTAGAAAAAACTAA+AGG + Chr6:81108804-81108823 MsG0680034122.01.T01:intron 30.0%
GAATCCTATCAATAACTAGA+GGG - Chr6:81111872-81111891 None:intergenic 30.0%
GATAAATATAACTCCTGGAT+CGG + Chr6:81111782-81111801 MsG0680034122.01.T01:CDS 30.0%
GATGTTAGTACCATATTTGA+CGG - Chr6:81110712-81110731 None:intergenic 30.0%
GCTAAGATAAATATAACTCC+TGG + Chr6:81111777-81111796 MsG0680034122.01.T01:CDS 30.0%
GTCAAATATGGTACTAACAT+CGG + Chr6:81110711-81110730 MsG0680034122.01.T01:CDS 30.0%
GTTATACAAAAATGTTGCTC+AGG + Chr6:81108405-81108424 MsG0680034122.01.T01:intron 30.0%
GTTTGGATTTGATTGAGAAA+TGG + Chr6:81108212-81108231 MsG0680034122.01.T01:CDS 30.0%
TAAAAACCATTCAGCTAACA+AGG - Chr6:81109852-81109871 None:intergenic 30.0%
TAAAACCGGTAATGTTGTAT+GGG + Chr6:81108457-81108476 MsG0680034122.01.T01:intron 30.0%
TACCTGTAGATTCTGTAATA+AGG + Chr6:81108738-81108757 MsG0680034122.01.T01:intron 30.0%
TCAAATATGGTACTAACATC+GGG + Chr6:81110712-81110731 MsG0680034122.01.T01:CDS 30.0%
TGTCTAATGATCACAGAAAA+TGG - Chr6:81110435-81110454 None:intergenic 30.0%
TTATCATACAGCTGTAAAAC+CGG + Chr6:81108443-81108462 MsG0680034122.01.T01:intron 30.0%
TTCCTGAATGAATCGTTTAT+CGG - Chr6:81111571-81111590 None:intergenic 30.0%
TTGACTAAATGCTTGTTCAA+GGG - Chr6:81111163-81111182 None:intergenic 30.0%
TTTATCTTTGAGTGTCTAAG+GGG + Chr6:81107546-81107565 MsG0680034122.01.T01:intron 30.0%
! AAAACCACATTTTCATACTG+GGG - Chr6:81107529-81107548 None:intergenic 30.0%
! AATTTTGTTACAACTGATGG+GGG + Chr6:81110080-81110099 MsG0680034122.01.T01:intron 30.0%
! AGATTTTATGCATCAGGTTA+TGG + Chr6:81110666-81110685 MsG0680034122.01.T01:CDS 30.0%
! AGGTTTTTACACTGTGTTTA+TGG + Chr6:81107020-81107039 MsG0680034122.01.T01:intron 30.0%
! ATCTAACCTATAGTTTTCCA+TGG - Chr6:81110285-81110304 None:intergenic 30.0%
! GATTTTATGCATCAGGTTAT+GGG + Chr6:81110667-81110686 MsG0680034122.01.T01:CDS 30.0%
! GGTTTTTACACTGTGTTTAT+GGG + Chr6:81107021-81107040 MsG0680034122.01.T01:intron 30.0%
! GTATTATCGATAACTTGTCA+AGG + Chr6:81107634-81107653 MsG0680034122.01.T01:intron 30.0%
! GTTTTATCTTTGAGTGTCTA+AGG + Chr6:81107544-81107563 MsG0680034122.01.T01:intron 30.0%
! TGCATTGTATTTTGCTTAGA+GGG + Chr6:81108953-81108972 MsG0680034122.01.T01:intron 30.0%
! TTCACACAACAAAACTGTTT+TGG + Chr6:81111473-81111492 MsG0680034122.01.T01:CDS 30.0%
! TTTTACAACTATATCGTTCG+AGG + Chr6:81111842-81111861 MsG0680034122.01.T01:CDS 30.0%
!! AAAATCCGAAATATTTCTGG+AGG + Chr6:81107000-81107019 MsG0680034122.01.T01:intron 30.0%
!! AGGTTTTTACAGTGTTTTAG+TGG + Chr6:81107136-81107155 MsG0680034122.01.T01:intron 30.0%
!!! TATGGGTGGAAAAGTTTTTT+TGG + Chr6:81107038-81107057 MsG0680034122.01.T01:intron 30.0%
AAACAAATACGAAACCATCC+TGG - Chr6:81111825-81111844 None:intergenic 35.0%
AACGATAGTATCTCAATTGC+AGG - Chr6:81110745-81110764 None:intergenic 35.0%
AAGGTTAAACCACTAATGTG+TGG - Chr6:81109064-81109083 None:intergenic 35.0%
AATAGCGACTATAGCACTAT+AGG - Chr6:81109706-81109725 None:intergenic 35.0%
AGAATTTGACCCGTCAAATA+TGG + Chr6:81110699-81110718 MsG0680034122.01.T01:CDS 35.0%
AGCACCTATAGTACAAAAGA+CGG + Chr6:81108676-81108695 MsG0680034122.01.T01:intron 35.0%
AGTCAAATCACTATAGGCAA+AGG + Chr6:81108782-81108801 MsG0680034122.01.T01:intron 35.0%
ATAAAGGGATTAAACTACCG+AGG - Chr6:81106581-81106600 None:intergenic 35.0%
ATATTGCCAACAGGATTTGA+AGG - Chr6:81111231-81111250 None:intergenic 35.0%
CAACCGAAATAGAATAAGAC+GGG + Chr6:81111602-81111621 MsG0680034122.01.T01:CDS 35.0%
CACAATGAGAATAGGTGTTA+TGG + Chr6:81109311-81109330 MsG0680034122.01.T01:intron 35.0%
CACGATTCACAACTATGTAT+GGG - Chr6:81109648-81109667 None:intergenic 35.0%
CACTATTAAGGTAGACTAGA+TGG + Chr6:81110228-81110247 MsG0680034122.01.T01:intron 35.0%
CCAACCGAAATAGAATAAGA+CGG + Chr6:81111601-81111620 MsG0680034122.01.T01:CDS 35.0%
CGAATCCTATCAATAACTAG+AGG - Chr6:81111873-81111892 None:intergenic 35.0%
CGATAGTAAAATAAGCGTAG+AGG + Chr6:81108509-81108528 MsG0680034122.01.T01:intron 35.0%
CTAATGATCACAGAAAATGG+CGG - Chr6:81110432-81110451 None:intergenic 35.0%
CTCCTTATTACAGAATCTAC+AGG - Chr6:81108743-81108762 None:intergenic 35.0%
CTTGACTAAATGCTTGTTCA+AGG - Chr6:81111164-81111183 None:intergenic 35.0%
CTTGTACTAAATAGTGTACG+CGG + Chr6:81109734-81109753 MsG0680034122.01.T01:intron 35.0%
GGATTTGATTGAGAAATGGT+TGG + Chr6:81108216-81108235 MsG0680034122.01.T01:CDS 35.0%
GGTTATATCTCAACTAGCAT+TGG - Chr6:81109831-81109850 None:intergenic 35.0%
GGTTCAATAGTTAGAGAAAG+AGG + Chr6:81110255-81110274 MsG0680034122.01.T01:intron 35.0%
GTAAAACCGGTAATGTTGTA+TGG + Chr6:81108456-81108475 MsG0680034122.01.T01:intron 35.0%
GTGAGATACCAATTTGTCTT+CGG - Chr6:81107972-81107991 None:intergenic 35.0%
TAAGGTAGACTAGATGGAAA+TGG + Chr6:81110234-81110253 MsG0680034122.01.T01:intron 35.0%
TACAAACGATCTCTAAGTGT+AGG + Chr6:81107801-81107820 MsG0680034122.01.T01:intron 35.0%
TAGAGATGAAAATGTTGCGT+TGG + Chr6:81108595-81108614 MsG0680034122.01.T01:intron 35.0%
TATTGCCAACAGGATTTGAA+GGG - Chr6:81111230-81111249 None:intergenic 35.0%
TCCACTCTTATGAGTTCTTA+TGG + Chr6:81107078-81107097 MsG0680034122.01.T01:intron 35.0%
TCCATAAGAACTCATAAGAG+TGG - Chr6:81107082-81107101 None:intergenic 35.0%
TGTTGTCAAATAGTGGCTAT+AGG - Chr6:81109791-81109810 None:intergenic 35.0%
TTATTATCCAGGGTAATCGA+CGG + Chr6:81110807-81110826 MsG0680034122.01.T01:intron 35.0%
TTCCGATAAACGATTCATTC+AGG + Chr6:81111566-81111585 MsG0680034122.01.T01:CDS 35.0%
TTGGAGAATTGAAGTGTGAA+GGG + Chr6:81109478-81109497 MsG0680034122.01.T01:intron 35.0%
TTTAGTCAAGCAAGAAAACG+AGG + Chr6:81111174-81111193 MsG0680034122.01.T01:CDS 35.0%
TTTGGAGAATTGAAGTGTGA+AGG + Chr6:81109477-81109496 MsG0680034122.01.T01:intron 35.0%
TTTGTCCCATACAACATTAC+CGG - Chr6:81108465-81108484 None:intergenic 35.0%
! AAAACCTTTTCGCACTAGAT+AGG - Chr6:81110492-81110511 None:intergenic 35.0%
! AAACCTTTTCGCACTAGATA+GGG - Chr6:81110491-81110510 None:intergenic 35.0%
! CAATCGAAAGGTCTTTTGAT+AGG - Chr6:81111428-81111447 None:intergenic 35.0%
! CTGCATTGTATTTTGCTTAG+AGG + Chr6:81108952-81108971 MsG0680034122.01.T01:intron 35.0%
! GTGGATTGTTTAACCAAACT+AGG + Chr6:81111639-81111658 MsG0680034122.01.T01:CDS 35.0%
! TAGTGCGAAAAGGTTTTTGA+CGG + Chr6:81110495-81110514 MsG0680034122.01.T01:intron 35.0%
! TCTACCGTCTTTTGTACTAT+AGG - Chr6:81108683-81108702 None:intergenic 35.0%
! TGGATTTTTAATCCACGCAT+AGG + Chr6:81107156-81107175 MsG0680034122.01.T01:intron 35.0%
! TTTTACACTGTGTTTATGGG+TGG + Chr6:81107024-81107043 MsG0680034122.01.T01:intron 35.0%
!! AACTAGCATTGGCTCAAATA+TGG - Chr6:81109820-81109839 None:intergenic 35.0%
!! ACTAGCATTGGCTCAAATAT+GGG - Chr6:81109819-81109838 None:intergenic 35.0%
!! AGAAGACTGAAAAGCATTTC+TGG - Chr6:81111261-81111280 None:intergenic 35.0%
!! GGTTTGTTGCATCAAGATAA+AGG - Chr6:81110011-81110030 None:intergenic 35.0%
!!! CACTTATTTTACTCTCGTGT+TGG - Chr6:81108575-81108594 None:intergenic 35.0%
!!! GGTTGAGATTGGGTTTTTTT+GGG - Chr6:81106468-81106487 None:intergenic 35.0%
!!! GTTGAGATTGGGTTTTTTTG+GGG - Chr6:81106467-81106486 None:intergenic 35.0%
!!! GTTGTTTGCTATGATTTTGC+AGG + Chr6:81110636-81110655 MsG0680034122.01.T01:intron 35.0%
!!! TGGTTGAGATTGGGTTTTTT+TGG - Chr6:81106469-81106488 None:intergenic 35.0%
!!! TTTGGGTTTTTGTTGTTGTG+TGG + Chr6:81108180-81108199 MsG0680034122.01.T01:intron 35.0%
AAAAATGTTGCTCAGGCTGA+AGG + Chr6:81108412-81108431 MsG0680034122.01.T01:intron 40.0%
AAAATGTTGCTCAGGCTGAA+GGG + Chr6:81108413-81108432 MsG0680034122.01.T01:intron 40.0%
AACTTGGAGGGATCAATGAT+GGG + Chr6:81108244-81108263 MsG0680034122.01.T01:CDS 40.0%
AAGAAGAAGGTGGTTGAGAT+TGG - Chr6:81106479-81106498 None:intergenic 40.0%
ACAGGTATTAAGTCTATCCC+TGG - Chr6:81111099-81111118 None:intergenic 40.0%
ACCCTGGATAATAAGGTGTA+GGG - Chr6:81110801-81110820 None:intergenic 40.0%
AGAAGAAGGTGGTTGAGATT+GGG - Chr6:81106478-81106497 None:intergenic 40.0%
AGACGGTAGAAACTTTGCTT+AGG + Chr6:81108693-81108712 MsG0680034122.01.T01:intron 40.0%
AGAGTGCACGAGAAATTCAT+AGG + Chr6:81107325-81107344 MsG0680034122.01.T01:intron 40.0%
AGCACACTTGATTCCTAGTT+TGG - Chr6:81111655-81111674 None:intergenic 40.0%
AGGAACGATGAGTTTCATTC+CGG - Chr6:81106523-81106542 None:intergenic 40.0%
AGTTCTCCTTTCTCGCTATA+AGG - Chr6:81111729-81111748 None:intergenic 40.0%
ATACCAATCCACTAAAACCC+GGG + Chr6:81106409-81106428 MsG0680034122.01.T01:five_prime_UTR 40.0%
ATCAGACCTTATAGCGAGAA+AGG + Chr6:81111720-81111739 MsG0680034122.01.T01:CDS 40.0%
ATTGGTATGGTGTGGTTGAA+GGG - Chr6:81106397-81106416 None:intergenic 40.0%
CAAATTGCACCACACATTAG+TGG + Chr6:81109052-81109071 MsG0680034122.01.T01:intron 40.0%
CATACCAATCCACTAAAACC+CGG + Chr6:81106408-81106427 MsG0680034122.01.T01:five_prime_UTR 40.0%
CCACGATTCACAACTATGTA+TGG - Chr6:81109649-81109668 None:intergenic 40.0%
CCATACATAGTTGTGAATCG+TGG + Chr6:81109646-81109665 MsG0680034122.01.T01:intron 40.0%
CTCTAAATCCAGCAATCGAA+AGG - Chr6:81111440-81111459 None:intergenic 40.0%
CTTATCTCACTAAGTGAGGT+CGG - Chr6:81108916-81108935 None:intergenic 40.0%
GAAACTTTGCTTAGGTGGTT+TGG + Chr6:81108701-81108720 MsG0680034122.01.T01:intron 40.0%
GAAGTAACTAACCTCTGTGT+TGG - Chr6:81111540-81111559 None:intergenic 40.0%
GAATCGTGGAAAATAGCGAT+TGG + Chr6:81109660-81109679 MsG0680034122.01.T01:intron 40.0%
GAGAGCAGTCAAATCACTAT+AGG + Chr6:81108776-81108795 MsG0680034122.01.T01:intron 40.0%
GAGTGCACGAGAAATTCATA+GGG + Chr6:81107326-81107345 MsG0680034122.01.T01:intron 40.0%
GATAATAAGGTGTAGGGACA+AGG - Chr6:81110795-81110814 None:intergenic 40.0%
GATGAAAATGTTGCGTTGGA+TGG + Chr6:81108599-81108618 MsG0680034122.01.T01:intron 40.0%
GCGCCTTATCAATCATTTCA+TGG + Chr6:81108301-81108320 MsG0680034122.01.T01:CDS 40.0%
GGAAGACCATGGAAAACTAT+AGG + Chr6:81110276-81110295 MsG0680034122.01.T01:intron 40.0%
GTCGATTACCCTGGATAATA+AGG - Chr6:81110808-81110827 None:intergenic 40.0%
GTGTGTAGCACAATGAGAAT+AGG + Chr6:81109303-81109322 MsG0680034122.01.T01:intron 40.0%
GTTGTCTTCGTACAGAAAAG+AGG + Chr6:81110055-81110074 MsG0680034122.01.T01:intron 40.0%
TACCCTGGATAATAAGGTGT+AGG - Chr6:81110802-81110821 None:intergenic 40.0%
TAGGCGTGAGAAAATTGTGA+GGG + Chr6:81107820-81107839 MsG0680034122.01.T01:intron 40.0%
TCAAAAGACCTTTCGATTGC+TGG + Chr6:81111429-81111448 MsG0680034122.01.T01:CDS 40.0%
TCACTTAGTGAGATAAGGCT+TGG + Chr6:81108919-81108938 MsG0680034122.01.T01:intron 40.0%
TCCCTACACCTTATTATCCA+GGG + Chr6:81110797-81110816 MsG0680034122.01.T01:CDS 40.0%
TGAGATACTATCGTTCTGCT+TGG + Chr6:81110750-81110769 MsG0680034122.01.T01:CDS 40.0%
TGTTGTATGGGACAAAGTGT+TGG + Chr6:81108469-81108488 MsG0680034122.01.T01:intron 40.0%
TTAGAGAAAGAGGAAGACCA+TGG + Chr6:81110265-81110284 MsG0680034122.01.T01:intron 40.0%
TTGACCCCAGTATGAAAATG+TGG + Chr6:81107522-81107541 MsG0680034122.01.T01:intron 40.0%
TTTATGCATCAGGTTATGGG+AGG + Chr6:81110670-81110689 MsG0680034122.01.T01:CDS 40.0%
! AAGCCTTATCTCACTAAGTG+AGG - Chr6:81108920-81108939 None:intergenic 40.0%
! AGTGATTATGCAGCTTTGAC+AGG + Chr6:81111058-81111077 MsG0680034122.01.T01:intron 40.0%
! ATTGCTGACGAAGTATTTGC+AGG + Chr6:81111312-81111331 MsG0680034122.01.T01:CDS 40.0%
! CCGTCTTATTCTATTTCGGT+TGG - Chr6:81111604-81111623 None:intergenic 40.0%
! GCACCCGTCTTATTCTATTT+CGG - Chr6:81111608-81111627 None:intergenic 40.0%
! GTGATTATGCAGCTTTGACA+GGG + Chr6:81111059-81111078 MsG0680034122.01.T01:intron 40.0%
! GTTGGCAGATTTTATGCATC+AGG + Chr6:81110660-81110679 MsG0680034122.01.T01:CDS 40.0%
! TCGATTGCTGGATTTAGAGT+CGG + Chr6:81111441-81111460 MsG0680034122.01.T01:CDS 40.0%
! TCTAAGGGGTTTGTTTGGAT+TGG + Chr6:81107560-81107579 MsG0680034122.01.T01:intron 40.0%
!! CAGAAAGACTGATTTGTTGC+TGG + Chr6:81108001-81108020 MsG0680034122.01.T01:intron 40.0%
!! GAAATGGTTGGTGAAGAACT+TGG + Chr6:81108228-81108247 MsG0680034122.01.T01:CDS 40.0%
!! GACTCGTAGAAGCACTATTA+AGG + Chr6:81110216-81110235 MsG0680034122.01.T01:intron 40.0%
!! GCTTGGTTTGTCTGATAACA+AGG + Chr6:81106860-81106879 MsG0680034122.01.T01:CDS 40.0%
!! TTTAGTGGATTGGTATGGTG+TGG - Chr6:81106405-81106424 None:intergenic 40.0%
!!! AGATTGGGTTTTTTTGGGGT+TGG - Chr6:81106463-81106482 None:intergenic 40.0%
!!! GGTGGGTTTTTTTTGGGTTT+GGG - Chr6:81106442-81106461 None:intergenic 40.0%
!!! TGGTGGGTTTTTTTTGGGTT+TGG - Chr6:81106443-81106462 None:intergenic 40.0%
AAACCACCCAAGACAAGACT+CGG - Chr6:81110181-81110200 None:intergenic 45.0%
AAACGAGGAGTCAAAGTTCG+CGG + Chr6:81111189-81111208 MsG0680034122.01.T01:CDS 45.0%
ACTTGGAGGGATCAATGATG+GGG + Chr6:81108245-81108264 MsG0680034122.01.T01:CDS 45.0%
AGAGAGAAGGAAAGGAAAGG+AGG - Chr6:81106362-81106381 None:intergenic 45.0%
AGCCGCGTTCATATAGTGTA+CGG + Chr6:81111402-81111421 MsG0680034122.01.T01:CDS 45.0%
AGGAAAGGAGGAGAAGAAGA+AGG - Chr6:81106350-81106369 None:intergenic 45.0%
AGTGAGTGAGAGAGAAGGAA+AGG - Chr6:81106370-81106389 None:intergenic 45.0%
ATCAGCCCAACAGAACATAC+CGG - Chr6:81111688-81111707 None:intergenic 45.0%
ATCTCCATGACCAAGTGATG+TGG - Chr6:81109530-81109549 None:intergenic 45.0%
CCAAGCTGAATAATCCCATG+AGG - Chr6:81106846-81106865 None:intergenic 45.0%
CCTCATGGGATTATTCAGCT+TGG + Chr6:81106843-81106862 MsG0680034122.01.T01:CDS 45.0%
CGACCTCACTTAGTGAGATA+AGG + Chr6:81108914-81108933 MsG0680034122.01.T01:intron 45.0%
CGGTAGAAACTTTGCTTAGG+TGG + Chr6:81108696-81108715 MsG0680034122.01.T01:intron 45.0%
CGTTCGAATTTATCCTCTCG+TGG + Chr6:81106702-81106721 MsG0680034122.01.T01:CDS 45.0%
CTATATCTGCACCAACACAG+AGG + Chr6:81111526-81111545 MsG0680034122.01.T01:CDS 45.0%
GAACTTGGAGGGATCAATGA+TGG + Chr6:81108243-81108262 MsG0680034122.01.T01:CDS 45.0%
GAATGAGTGAGTGAGAGAGA+AGG - Chr6:81106375-81106394 None:intergenic 45.0%
GAGGAGATGAGATGTTGCAT+TGG + Chr6:81108528-81108547 MsG0680034122.01.T01:intron 45.0%
GAGGATGAAGAAGAAGAAGG+TGG - Chr6:81106489-81106508 None:intergenic 45.0%
GATTGGTATGGTGTGGTTGA+AGG - Chr6:81106398-81106417 None:intergenic 45.0%
GCTATAGCGCATCGAACATT+AGG - Chr6:81110335-81110354 None:intergenic 45.0%
GGAAAGGAGGAGAAGAAGAA+GGG - Chr6:81106349-81106368 None:intergenic 45.0%
GGACAAGGAATGCATTTCCA+TGG - Chr6:81110780-81110799 None:intergenic 45.0%
GGAGAGGATGAAGAAGAAGA+AGG - Chr6:81106492-81106511 None:intergenic 45.0%
GGAGCAGTGTTGTCAAATAG+TGG - Chr6:81109798-81109817 None:intergenic 45.0%
GGGGTCACACAAAACAAGTT+AGG + Chr6:81110099-81110118 MsG0680034122.01.T01:intron 45.0%
GGGTTGCGAGAAAATTGTGA+CGG + Chr6:81108081-81108100 MsG0680034122.01.T01:intron 45.0%
GGTGTCAGAATATTGCCAAC+AGG - Chr6:81111240-81111259 None:intergenic 45.0%
GTAGGCGTGAGAAAATTGTG+AGG + Chr6:81107819-81107838 MsG0680034122.01.T01:intron 45.0%
GTCAAATAGCGGTTAGAGCA+AGG - Chr6:81109083-81109102 None:intergenic 45.0%
GTCCCTACACCTTATTATCC+AGG + Chr6:81110796-81110815 MsG0680034122.01.T01:CDS 45.0%
GTGAGAGAGAAGGAAAGGAA+AGG - Chr6:81106365-81106384 None:intergenic 45.0%
TAATCCACGCATAGGTGAAC+AGG + Chr6:81107164-81107183 MsG0680034122.01.T01:intron 45.0%
TAGAGGGAATGCATGTGTTG+TGG + Chr6:81108969-81108988 MsG0680034122.01.T01:intron 45.0%
TCAGTACTTCGACAGTGAAC+AGG - Chr6:81111117-81111136 None:intergenic 45.0%
TCGAACCCTTCAAATCCTGT+TGG + Chr6:81111222-81111241 MsG0680034122.01.T01:CDS 45.0%
TGAATTTCTCGTGCACTCTG+TGG - Chr6:81107324-81107343 None:intergenic 45.0%
TGACCCTATCTAGTGCGAAA+AGG + Chr6:81110485-81110504 MsG0680034122.01.T01:intron 45.0%
TTCGAACGAGAAGAAGAACG+AGG - Chr6:81106690-81106709 None:intergenic 45.0%
TTCTGTTGGGCTGATATGAG+TGG + Chr6:81111693-81111712 MsG0680034122.01.T01:CDS 45.0%
TTGTGTGGTGCAGTTGAGTT+TGG + Chr6:81108195-81108214 MsG0680034122.01.T01:intron 45.0%
! AAGAAGCGTAGGAGAAGAAG+GGG - Chr6:81106667-81106686 None:intergenic 45.0%
! AGTTTCATTCCGGTTCGAGA+GGG - Chr6:81106513-81106532 None:intergenic 45.0%
! GAAGAAGCGTAGGAGAAGAA+GGG - Chr6:81106668-81106687 None:intergenic 45.0%
! GAGTGTCTAAGGGGTTTGTT+TGG + Chr6:81107555-81107574 MsG0680034122.01.T01:intron 45.0%
! GATGTTGCATTGGAGAGTGT+TGG + Chr6:81108538-81108557 MsG0680034122.01.T01:intron 45.0%
! GTGTTGTTGATCTTGGATCG+CGG + Chr6:81109013-81109032 MsG0680034122.01.T01:intron 45.0%
! TGCGAAAAGGTTTTTGACGG+TGG + Chr6:81110498-81110517 MsG0680034122.01.T01:intron 45.0%
! TGCTATGATTTTGCAGGCGT+TGG + Chr6:81110642-81110661 MsG0680034122.01.T01:intron 45.0%
!! ACCATCCTGGTTCTATGCAA+TGG - Chr6:81111812-81111831 None:intergenic 45.0%
!! ATGGTTGGTGAAGAACTTGG+AGG + Chr6:81108231-81108250 MsG0680034122.01.T01:CDS 45.0%
!! GTATGGGACAAAGTGTTGGT+CGG + Chr6:81108473-81108492 MsG0680034122.01.T01:intron 45.0%
!! TATGGGACAAAGTGTTGGTC+GGG + Chr6:81108474-81108493 MsG0680034122.01.T01:intron 45.0%
!! TGGTTGGTGAAGAACTTGGA+GGG + Chr6:81108232-81108251 MsG0680034122.01.T01:CDS 45.0%
!! TTGCATTGGAGAGTGTTGGT+CGG + Chr6:81108542-81108561 MsG0680034122.01.T01:intron 45.0%
!!! CGGGTTTTAGTGGATTGGTA+TGG - Chr6:81106410-81106429 None:intergenic 45.0%
!!! GGGGTTGGTGGGTTTTTTTT+GGG - Chr6:81106448-81106467 None:intergenic 45.0%
!!! TGGGGTTGGTGGGTTTTTTT+TGG - Chr6:81106449-81106468 None:intergenic 45.0%
!!! TGGGTGGTTTTGACATCTGT+GGG + Chr6:81110191-81110210 MsG0680034122.01.T01:intron 45.0%
!!! TGGGTTTTTTTGGGGTTGGT+GGG - Chr6:81106459-81106478 None:intergenic 45.0%
!!! TTGGGTGGTTTTGACATCTG+TGG + Chr6:81110190-81110209 MsG0680034122.01.T01:intron 45.0%
!!! TTGGGTTTTTTTGGGGTTGG+TGG - Chr6:81106460-81106479 None:intergenic 45.0%
!! TAAAAATATCTTAATTAAAA+AGG + Chr6:81110924-81110943 MsG0680034122.01.T01:intron 5.0%
!!! CTTAATTTTAATTATTATTA+CGG + Chr6:81109423-81109442 MsG0680034122.01.T01:intron 5.0%
!!! TTTTTTTTTTAATGATTTTT+CGG + Chr6:81106914-81106933 MsG0680034122.01.T01:intron 5.0%
AAGGAGGAGAAGAAGAAGGG+AGG - Chr6:81106346-81106365 None:intergenic 50.0%
ACCGTTGCGACCTTGAACTA+CGG - Chr6:81106553-81106572 None:intergenic 50.0%
ACGGGTGCACAATGAGTTTG+TGG + Chr6:81111620-81111639 MsG0680034122.01.T01:CDS 50.0%
ACTCGAAATAGAGCCACGAG+AGG - Chr6:81106718-81106737 None:intergenic 50.0%
AGAGTGCAGACCACATCACT+TGG + Chr6:81109517-81109536 MsG0680034122.01.T01:intron 50.0%
AGGGTGCACGAGAAACTCAT+AGG + Chr6:81107249-81107268 MsG0680034122.01.T01:intron 50.0%
ATAGGTGAACAGGTGCACGA+GGG + Chr6:81107174-81107193 MsG0680034122.01.T01:intron 50.0%
CAGACCACATCACTTGGTCA+TGG + Chr6:81109523-81109542 MsG0680034122.01.T01:intron 50.0%
CCTCTTCAAGCCGTAGTTCA+AGG + Chr6:81106540-81106559 MsG0680034122.01.T01:CDS 50.0%
CCTTGAACTACGGCTTGAAG+AGG - Chr6:81106543-81106562 None:intergenic 50.0%
GCCATTGCATAGAACCAGGA+TGG + Chr6:81111808-81111827 MsG0680034122.01.T01:CDS 50.0%
GCTTGCCATTGCATAGAACC+AGG + Chr6:81111804-81111823 MsG0680034122.01.T01:CDS 50.0%
GCTTTGACAGGGACGTAAGA+TGG + Chr6:81111070-81111089 MsG0680034122.01.T01:intron 50.0%
GGCCGTACACTATATGAACG+CGG - Chr6:81111407-81111426 None:intergenic 50.0%
GGGTGCACGAGAAACTCATA+GGG + Chr6:81107250-81107269 MsG0680034122.01.T01:intron 50.0%
GTATTTGCAGGCTCCACGTA+CGG + Chr6:81111324-81111343 MsG0680034122.01.T01:CDS 50.0%
TCTCAGGACGACGTCGTTTA+AGG - Chr6:81106629-81106648 None:intergenic 50.0%
TGCATAGGGTGAACTGCACA+GGG + Chr6:81107230-81107249 MsG0680034122.01.T01:intron 50.0%
TTGCATAGGGTGAACTGCAC+AGG + Chr6:81107229-81107248 MsG0680034122.01.T01:intron 50.0%
TTGGGTTTGGGTCATTGACC+CGG - Chr6:81106430-81106449 None:intergenic 50.0%
! AAGATGGCCGAGTCTTGTCT+TGG + Chr6:81110171-81110190 MsG0680034122.01.T01:intron 50.0%
! AGATGGCCGAGTCTTGTCTT+GGG + Chr6:81110172-81110191 MsG0680034122.01.T01:intron 50.0%
! GAAGAACGAGGAAGAAGCGT+AGG - Chr6:81106678-81106697 None:intergenic 50.0%
! GAGTTTCATTCCGGTTCGAG+AGG - Chr6:81106514-81106533 None:intergenic 50.0%
! GGAAGAAGCGTAGGAGAAGA+AGG - Chr6:81106669-81106688 None:intergenic 50.0%
!! GTCATTGACCCGGGTTTTAG+TGG - Chr6:81106420-81106439 None:intergenic 50.0%
!! TGACCCGGGTTTTAGTGGAT+TGG - Chr6:81106415-81106434 None:intergenic 50.0%
AAACTCCTCGCTTCCGTACG+TGG - Chr6:81111340-81111359 None:intergenic 55.0%
AAGTGTGCTAAGAGCAGCGC+CGG + Chr6:81111666-81111685 MsG0680034122.01.T01:CDS 55.0%
ACTAAGTGAGGTCGGCTACG+TGG - Chr6:81108908-81108927 None:intergenic 55.0%
ATGCAATGGCAAGCCGATCC+AGG - Chr6:81111798-81111817 None:intergenic 55.0%
CATAGGTGAACAGGTGCACG+AGG + Chr6:81107173-81107192 MsG0680034122.01.T01:intron 55.0%
GCCGTAGTTCAAGGTCGCAA+CGG + Chr6:81106549-81106568 MsG0680034122.01.T01:CDS 55.0%
TCATCCTCTCCCTCTCGAAC+CGG + Chr6:81106501-81106520 MsG0680034122.01.T01:CDS 55.0%
TCGTTCTGCTTGGCAGACCA+TGG + Chr6:81110760-81110779 MsG0680034122.01.T01:CDS 55.0%
TGCACCTGTTCACCTATGCG+TGG - Chr6:81107171-81107190 None:intergenic 55.0%
TGGGTTTGGGTCATTGACCC+GGG - Chr6:81106429-81106448 None:intergenic 55.0%
! GGTCGCAACGGTTTTCTCCT+CGG + Chr6:81106561-81106580 MsG0680034122.01.T01:CDS 55.0%
!! CAGCGCCGGTATGTTCTGTT+GGG + Chr6:81111680-81111699 MsG0680034122.01.T01:CDS 55.0%
!! GAAAGTGCCGTCGATTACCC+TGG - Chr6:81110817-81110836 None:intergenic 55.0%
AGGGACGTAAGATGGCGTCC+AGG + Chr6:81111078-81111097 MsG0680034122.01.T01:intron 60.0%
GGGACGTAAGATGGCGTCCA+GGG + Chr6:81111079-81111098 MsG0680034122.01.T01:intron 60.0%
! CATTCCGGTTCGAGAGGGAG+AGG - Chr6:81106508-81106527 None:intergenic 60.0%
! TGGCCGAGTCTTGTCTTGGG+TGG + Chr6:81110175-81110194 MsG0680034122.01.T01:intron 60.0%
!! GCAGCGCCGGTATGTTCTGT+TGG + Chr6:81111679-81111698 MsG0680034122.01.T01:CDS 60.0%
AGGCTCCACGTACGGAAGCG+AGG + Chr6:81111332-81111351 MsG0680034122.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 81106327 81111926 81106327 ID=MsG0680034122.01;Name=MsG0680034122.01
Chr6 mRNA 81106327 81111926 81106327 ID=MsG0680034122.01.T01;Parent=MsG0680034122.01;Name=MsG0680034122.01.T01;_AED=0.49;_eAED=0.49;_QI=108|0.66|0.75|1|1|1|4|0|529
Chr6 exon 81111080 81111926 81111080 ID=MsG0680034122.01.T01:exon:9613;Parent=MsG0680034122.01.T01
Chr6 exon 81110658 81110818 81110658 ID=MsG0680034122.01.T01:exon:9612;Parent=MsG0680034122.01.T01
Chr6 exon 81108208 81108342 81108208 ID=MsG0680034122.01.T01:exon:9611;Parent=MsG0680034122.01.T01
Chr6 exon 81106327 81106881 81106327 ID=MsG0680034122.01.T01:exon:9610;Parent=MsG0680034122.01.T01
Chr6 five_prime_UTR 81106327 81106434 81106327 ID=MsG0680034122.01.T01:five_prime_utr;Parent=MsG0680034122.01.T01
Chr6 CDS 81106435 81106881 81106435 ID=MsG0680034122.01.T01:cds;Parent=MsG0680034122.01.T01
Chr6 CDS 81108208 81108342 81108208 ID=MsG0680034122.01.T01:cds;Parent=MsG0680034122.01.T01
Chr6 CDS 81110658 81110818 81110658 ID=MsG0680034122.01.T01:cds;Parent=MsG0680034122.01.T01
Chr6 CDS 81111080 81111926 81111080 ID=MsG0680034122.01.T01:cds;Parent=MsG0680034122.01.T01
Gene Sequence

>MsG0680034122.01.T01

ATGACCCAAACCCAAAAAAAACCCACCAACCCCAAAAAAACCCAATCTCAACCACCTTCTTCTTCTTCATCCTCTCCCTCTCGAACCGGAATGAAACTCATCGTTCCTCTTCAAGCCGTAGTTCAAGGTCGCAACGGTTTTCTCCTCGGTAGTTTAATCCCTTTATCACTCTTCTACTTTCTTCAACTCTACCTTAAACGACGTCGTCCTGAGAATAATAATAACAATACCCCTTCTTCTCCTACGCTTCTTCCTCGTTCTTCTTCTCGTTCGAATTTATCCTCTCGTGGCTCTATTTCGAGTGTGAAAGTGTCGAAACTTGCGAATGTTGTTGCGAAACGTGATGATTCTCTTTATTATGTTGGAATTGAAAGAGTTGAGAAAGATCCTTATCATGTTAAGTTTAATCCTCATGGGATTATTCAGCTTGGTTTGTCTGATAACAAGTTGAGTTTGGATTTGATTGAGAAATGGTTGGTGAAGAACTTGGAGGGATCAATGATGGGGAATGAAGATATCAATTTGAGTATAAATGGAATTGCGCCTTATCAATCATTTCATGGATTGAATGAATTGAAAATTGCGTTGGCAGATTTTATGCATCAGGTTATGGGAGGATCAGTAGAATTTGACCCGTCAAATATGGTACTAACATCGGGAGCAACTCCTGCAATTGAGATACTATCGTTCTGCTTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCTTATTATCCAGGGGACGTAAGATGGCGTCCAGGGATAGACTTAATACCTGTTCACTGTCGAAGTACTGACAATTTCAATCTAAACATCACTGCCCTTGAACAAGCATTTAGTCAAGCAAGAAAACGAGGAGTCAAAGTTCGCGGAATTCTCATCTCGAACCCTTCAAATCCTGTTGGCAATATTCTGACACCAGAAATGCTTTTCAGTCTTCTAGACTTTGCTGAAGATAAAAACATTCATATCATTGCTGACGAAGTATTTGCAGGCTCCACGTACGGAAGCGAGGAGTTTGTGAGTATAGCCGAAGTTCTCGATTCAGAATATATAGATAAAAGCCGCGTTCATATAGTGTACGGCCTATCAAAAGACCTTTCGATTGCTGGATTTAGAGTCGGAGTTATACATTCACACAACAAAACTGTTTTGGATGCTGCCAAAAAAATGAGCAGATTTTCATCTATATCTGCACCAACACAGAGGTTAGTTACTTCAATGCTTTCCGATAAACGATTCATTCAGGAATACATTGAAACCAACCGAAATAGAATAAGACGGGTGCACAATGAGTTTGTGGATTGTTTAACCAAACTAGGAATCAAGTGTGCTAAGAGCAGCGCCGGTATGTTCTGTTGGGCTGATATGAGTGGTTTAATCAGACCTTATAGCGAGAAAGGAGAACTTGAATTATGGGAGAAGTTTATGAGTGTTGCTAAGATAAATATAACTCCTGGATCGGCTTGCCATTGCATAGAACCAGGATGGTTTCGTATTTGTTTTACAACTATATCGTTCGAGGAAATCCCTCTAGTTATTGATAGGATTCGGAAAGTTGTTGAAAGTTGTAAATCTTCCAATTGA

Protein sequence

>MsG0680034122.01.T01

MTQTQKKPTNPKKTQSQPPSSSSSSPSRTGMKLIVPLQAVVQGRNGFLLGSLIPLSLFYFLQLYLKRRRPENNNNNTPSSPTLLPRSSSRSNLSSRGSISSVKVSKLANVVAKRDDSLYYVGIERVEKDPYHVKFNPHGIIQLGLSDNKLSLDLIEKWLVKNLEGSMMGNEDINLSINGIAPYQSFHGLNELKIALADFMHQVMGGSVEFDPSNMVLTSGATPAIEILSFCLADHGNAFLVPTPYYPGDVRWRPGIDLIPVHCRSTDNFNLNITALEQAFSQARKRGVKVRGILISNPSNPVGNILTPEMLFSLLDFAEDKNIHIIADEVFAGSTYGSEEFVSIAEVLDSEYIDKSRVHIVYGLSKDLSIAGFRVGVIHSHNKTVLDAAKKMSRFSSISAPTQRLVTSMLSDKRFIQEYIETNRNRIRRVHNEFVDCLTKLGIKCAKSSAGMFCWADMSGLIRPYSEKGELELWEKFMSVAKINITPGSACHCIEPGWFRICFTTISFEEIPLVIDRIRKVVESCKSSN*