AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038111.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038111.01.T01 MTR_8g106870 70.746 335 28 4 1 265 1 335 3.07e-158 443
MsG0780038111.01.T01 MTR_0110s0010 46.795 312 89 8 1 241 3 308 8.32e-74 229
MsG0780038111.01.T01 MTR_4g051000 31.973 294 119 6 39 265 19 298 7.77e-34 124
MsG0780038111.01.T01 MTR_2g089530 31.973 294 119 6 39 265 19 298 7.77e-34 124
MsG0780038111.01.T01 MTR_2g047975 31.864 295 116 10 34 256 28 309 3.07e-32 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038111.01.T01 AT3G18050 36.905 336 110 11 12 265 11 326 1.11e-47 161
MsG0780038111.01.T01 AT4G28100 34.981 263 93 5 33 232 26 273 6.37e-39 138

Find 71 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATGAGAGATTCTATTAA+AGG 0.187880 7:-40318761 None:intergenic
AGCAGCATGCTTGTTGGATT+TGG 0.241303 7:-40316580 None:intergenic
TGTTCATCTGAGAGACTTAA+AGG 0.251190 7:-40316528 None:intergenic
GGAAAGGCTTTGAAAGTTAG+AGG 0.261782 7:+40316765 MsG0780038111.01.T01:CDS
TAACAAAGATTGTGGACTAA+TGG 0.300105 7:+40318285 MsG0780038111.01.T01:CDS
ACAATCTTTGTTATGGATCT+TGG 0.301361 7:-40318275 None:intergenic
AGAAACATGTGAGAGTGATT+TGG 0.318675 7:+40316743 MsG0780038111.01.T01:CDS
CTTACATTCACACGGTTACT+TGG 0.323135 7:+40318341 MsG0780038111.01.T01:CDS
GAATGAACAAGATCAGAATA+AGG 0.327555 7:-40316383 None:intergenic
GAAACATGTGAGAGTGATTT+GGG 0.335585 7:+40316744 MsG0780038111.01.T01:CDS
TTTAGTTATTATTTGAAATT+GGG 0.339513 7:+40318653 MsG0780038111.01.T01:three_prime_UTR
CACTTAACTCAAAACTCAAA+TGG 0.364950 7:+40318549 MsG0780038111.01.T01:exon
TATTAGTCTATCGCAGAATC+TGG 0.368092 7:+40318731 MsG0780038111.01.T01:three_prime_UTR
TTAGTCCACAATCTTTGTTA+TGG 0.370896 7:-40318282 None:intergenic
GCTTACTCTGCCACTGCTCT+TGG 0.375981 7:+40316663 MsG0780038111.01.T01:CDS
AACAAAGATTGTGGACTAAT+GGG 0.379439 7:+40318286 MsG0780038111.01.T01:CDS
CTTGCAACATCAGCTTGTTC+AGG 0.386076 7:-40316501 None:intergenic
GGGATTGTTCCTTGTGAAGA+TGG 0.393542 7:-40316471 None:intergenic
ACTGTTGCTGCATCAGGTAT+AGG 0.404077 7:-40316429 None:intergenic
GTTCCTTGTGAAGATGGATT+TGG 0.404459 7:-40316465 None:intergenic
CTGTTGCTGCATCAGGTATA+GGG 0.413282 7:-40316428 None:intergenic
AAATATACAAATGCCAAGAT+AGG 0.414288 7:-40318590 None:intergenic
AAGTAAAGATTGGTGCTTTG+AGG 0.419197 7:-40318486 None:intergenic
CATGGCTTCTTGCTAAGAAT+AGG 0.421289 7:+40318314 MsG0780038111.01.T01:CDS
GTATATTTGAATATTAGCTT+TGG 0.421378 7:+40318605 MsG0780038111.01.T01:three_prime_UTR
ATCATCAGCAGCATGCTTGT+TGG 0.425684 7:-40316586 None:intergenic
AAAAGATTGATCTCCTATCT+TGG 0.436673 7:+40318577 MsG0780038111.01.T01:three_prime_UTR
TACTCTGCCACTGCTCTTGG+TGG 0.440680 7:+40316666 MsG0780038111.01.T01:CDS
GGTTGAACTGTTGCTGCATC+AGG 0.446546 7:-40316435 None:intergenic
ACTTAACTCAAAACTCAAAT+GGG 0.453388 7:+40318550 MsG0780038111.01.T01:exon
AGCTTTGGTGCCTAGCTACT+AGG 0.463643 7:+40318620 MsG0780038111.01.T01:three_prime_UTR
CTCTCAGATGAACACTTCAA+TGG 0.470119 7:+40316537 MsG0780038111.01.T01:CDS
TGGTAACAAAGGCATGTCAT+AGG 0.475683 7:-40316712 None:intergenic
AATGAACAAGATCAGAATAA+GGG 0.476316 7:-40316382 None:intergenic
AATAACAAAGAAGTAAAGAT+TGG 0.476661 7:-40318496 None:intergenic
GATTGTGGGTCAGATCCATC+AGG 0.479917 7:-40318388 None:intergenic
TCACATGTTTCTGAATCATC+TGG 0.486932 7:-40316732 None:intergenic
ACTTCAAATTCAAGCAAACT+AGG 0.488204 7:+40318241 MsG0780038111.01.T01:CDS
TATAACCACGCAGCTAGAGC+AGG 0.490667 7:-40316636 None:intergenic
ACCACATCACAAGTCTCATT+AGG 0.501623 7:-40316804 None:intergenic
TCAGCTTGTTCAGGAAAGGC+AGG 0.508237 7:-40316492 None:intergenic
TATTAAGAGTGCATGATTGT+GGG 0.526493 7:-40318402 None:intergenic
GTTCATCTGAGAGACTTAAA+GGG 0.530502 7:-40316527 None:intergenic
GCTTTGATGTTGAGCCCTGA+TGG 0.531610 7:+40318373 MsG0780038111.01.T01:CDS
TTACATTCACACGGTTACTT+GGG 0.542923 7:+40318342 MsG0780038111.01.T01:CDS
CAGGGCAACATCTGCTACGG+TGG 0.543905 7:-40316617 None:intergenic
TCATGCACTCTTAATAGTGA+TGG 0.547682 7:+40318409 MsG0780038111.01.T01:CDS
CTATTAAGAGTGCATGATTG+TGG 0.554864 7:-40318403 None:intergenic
AACATCAGCTTGTTCAGGAA+AGG 0.557995 7:-40316496 None:intergenic
GAAAGGCTTTGAAAGTTAGA+GGG 0.558239 7:+40316766 MsG0780038111.01.T01:CDS
AAGATCCATAACAAAGATTG+TGG 0.561040 7:+40318277 MsG0780038111.01.T01:CDS
AAATTACACTCCTAGTAGCT+AGG 0.563739 7:-40318630 None:intergenic
TCAGAAGAATCAACAGCAAG+AGG 0.565150 7:-40318436 None:intergenic
GCTCTTGGTGGATTTGAACA+TGG 0.566075 7:+40316678 MsG0780038111.01.T01:CDS
GATAATAGAATGAAATGCAT+AGG 0.568060 7:-40318526 None:intergenic
GAAGATGGATTTGGTGTGAG+TGG 0.572672 7:-40316456 None:intergenic
ATGTGAGAGTGATTTGGGAA+AGG 0.572811 7:+40316749 MsG0780038111.01.T01:CDS
GCTGCATCAGGTATAGGGAT+AGG 0.583191 7:-40316423 None:intergenic
ATAGGTAGAGACAGATAGCA+AGG 0.586691 7:-40316405 None:intergenic
TCTGAATCATCTGGTAACAA+AGG 0.590518 7:-40316723 None:intergenic
GAGCAGGGCAACATCTGCTA+CGG 0.598551 7:-40316620 None:intergenic
CAGCTTGTTCAGGAAAGGCA+GGG 0.600385 7:-40316491 None:intergenic
AGAATAAGGGCATTGAAACA+TGG 0.611713 7:-40316369 None:intergenic
TTCAAATCCACCAAGAGCAG+TGG 0.614427 7:-40316673 None:intergenic
ACCTAATGAGACTTGTGATG+TGG 0.641764 7:+40316803 MsG0780038111.01.T01:CDS
ATAACCACGCAGCTAGAGCA+GGG 0.647079 7:-40316635 None:intergenic
GTGGACTAATGGGATTAACA+TGG 0.649737 7:+40318296 MsG0780038111.01.T01:CDS
ATTGTGGGTCAGATCCATCA+GGG 0.665448 7:-40318387 None:intergenic
TAGGACAGCTTACATTCACA+CGG 0.684791 7:+40318333 MsG0780038111.01.T01:CDS
ACACCAAATCCATCTTCACA+AGG 0.698474 7:+40316462 MsG0780038111.01.T01:CDS
GTTGCCCTGCTCTAGCTGCG+TGG 0.703286 7:+40316631 MsG0780038111.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGAGAAAAAAATTTA+GGG - Chr7:40317347-40317366 None:intergenic 10.0%
!!! TTTAGTTATTATTTGAAATT+GGG + Chr7:40318653-40318672 MsG0780038111.01.T01:three_prime_UTR 10.0%
!!! TTTTAGTTATTATTTGAAAT+TGG + Chr7:40318652-40318671 MsG0780038111.01.T01:three_prime_UTR 10.0%
!! AAATAGAGAAAAAAATTTAG+GGG - Chr7:40317346-40317365 None:intergenic 15.0%
!! CAAAATAGAGAAAAAAATTT+AGG - Chr7:40317348-40317367 None:intergenic 15.0%
!!! AGACATCATAATAAATTTTA+AGG + Chr7:40317481-40317500 MsG0780038111.01.T01:intron 15.0%
!! AATAAACAAGTACATAAGAA+TGG - Chr7:40317054-40317073 None:intergenic 20.0%
!! AATAACAAAGAAGTAAAGAT+TGG - Chr7:40318499-40318518 None:intergenic 20.0%
!! AATCATAATGAAATCTTGTT+GGG + Chr7:40316885-40316904 MsG0780038111.01.T01:intron 20.0%
!! ATTTCAACCTACTAATTATT+TGG - Chr7:40318037-40318056 None:intergenic 20.0%
!! TAATCATAATGAAATCTTGT+TGG + Chr7:40316884-40316903 MsG0780038111.01.T01:intron 20.0%
!! TATTTCACTAATACAACTAA+TGG - Chr7:40317206-40317225 None:intergenic 20.0%
!!! CATCATAATAAATTTTAAGG+TGG + Chr7:40317484-40317503 MsG0780038111.01.T01:intron 20.0%
!!! CTTGTTTATTTGAAATTTGA+TGG + Chr7:40317064-40317083 MsG0780038111.01.T01:intron 20.0%
!!! GTATATTTGAATATTAGCTT+TGG + Chr7:40318605-40318624 MsG0780038111.01.T01:three_prime_UTR 20.0%
!!! TTTAAAGCCAAATAATTAGT+AGG + Chr7:40318027-40318046 MsG0780038111.01.T01:intron 20.0%
!!! TTTGACTATTTTTCAATGAA+TGG + Chr7:40318108-40318127 MsG0780038111.01.T01:intron 20.0%
! AAATATACAAATGCCAAGAT+AGG - Chr7:40318593-40318612 None:intergenic 25.0%
! AAATGAATGTCTTCAAATCA+AGG + Chr7:40317236-40317255 MsG0780038111.01.T01:intron 25.0%
! AATGAACAAGATCAGAATAA+GGG - Chr7:40316385-40316404 None:intergenic 25.0%
! AATTAAACTTACATCATGCT+TGG + Chr7:40317111-40317130 MsG0780038111.01.T01:intron 25.0%
! ACTTAACTCAAAACTCAAAT+GGG + Chr7:40318550-40318569 MsG0780038111.01.T01:exon 25.0%
! AGAACACTTACAATAAAAGA+AGG - Chr7:40318076-40318095 None:intergenic 25.0%
! ATCATAATGAAATCTTGTTG+GGG + Chr7:40316886-40316905 MsG0780038111.01.T01:intron 25.0%
! ATGTTGTCTTAGAAAATAGA+TGG - Chr7:40318006-40318025 None:intergenic 25.0%
! GATAATAGAATGAAATGCAT+AGG - Chr7:40318529-40318548 None:intergenic 25.0%
! GATTTAATAGCAGAACATTA+TGG - Chr7:40317967-40317986 None:intergenic 25.0%
! TGTTGTCTTAGAAAATAGAT+GGG - Chr7:40318005-40318024 None:intergenic 25.0%
! TTTATTGTAAGTGTTCTTGA+TGG + Chr7:40318079-40318098 MsG0780038111.01.T01:intron 25.0%
!! CTTTTAACCTTTCTTTACTT+TGG + Chr7:40317149-40317168 MsG0780038111.01.T01:intron 25.0%
!! CTTTTGGCATAATATATGTT+TGG - Chr7:40318142-40318161 None:intergenic 25.0%
!! TACAATAAAAGAAGGCATAT+AGG - Chr7:40318068-40318087 None:intergenic 25.0%
!! TGAAGACATTCATTTTACTA+TGG - Chr7:40317231-40317250 None:intergenic 25.0%
!! TTTATTGCTATTGTGGTATT+AGG + Chr7:40316826-40316845 MsG0780038111.01.T01:intron 25.0%
AAAAGATTGATCTCCTATCT+TGG + Chr7:40318577-40318596 MsG0780038111.01.T01:three_prime_UTR 30.0%
AAGAACGATAAATCCAAATG+TGG - Chr7:40317760-40317779 None:intergenic 30.0%
AAGATCCATAACAAAGATTG+TGG + Chr7:40318277-40318296 MsG0780038111.01.T01:CDS 30.0%
AAGTAGGAAATGTGAATTAG+AGG - Chr7:40317701-40317720 None:intergenic 30.0%
ACTACAAGTACAAACACAAA+TGG - Chr7:40317318-40317337 None:intergenic 30.0%
ACTTCAAATTCAAGCAAACT+AGG + Chr7:40318241-40318260 MsG0780038111.01.T01:CDS 30.0%
AGTAGGAAATGTGAATTAGA+GGG - Chr7:40317700-40317719 None:intergenic 30.0%
CACTTAACTCAAAACTCAAA+TGG + Chr7:40318549-40318568 MsG0780038111.01.T01:exon 30.0%
CTTAGAAAATAGATGGGAAT+CGG - Chr7:40317999-40318018 None:intergenic 30.0%
GAATGAACAAGATCAGAATA+AGG - Chr7:40316386-40316405 None:intergenic 30.0%
GATTTGCATCACAAATTAGA+TGG + Chr7:40317384-40317403 MsG0780038111.01.T01:intron 30.0%
TAACCTTTCTTTACTTTGGA+GGG + Chr7:40317153-40317172 MsG0780038111.01.T01:intron 30.0%
TTAACCTTTCTTTACTTTGG+AGG + Chr7:40317152-40317171 MsG0780038111.01.T01:intron 30.0%
TTAGAAAATAGATGGGAATC+GGG - Chr7:40317998-40318017 None:intergenic 30.0%
TTAGTCCACAATCTTTGTTA+TGG - Chr7:40318285-40318304 None:intergenic 30.0%
TTCCAATAACTGAGTTAAGT+AGG - Chr7:40317717-40317736 None:intergenic 30.0%
TTCCTACTTAACTCAGTTAT+TGG + Chr7:40317712-40317731 MsG0780038111.01.T01:intron 30.0%
! AACAAAGATTGTGGACTAAT+GGG + Chr7:40318286-40318305 MsG0780038111.01.T01:CDS 30.0%
! ACAATCTTTGTTATGGATCT+TGG - Chr7:40318278-40318297 None:intergenic 30.0%
! CATAACTTTTGTCGAAATCA+AGG - Chr7:40317561-40317580 None:intergenic 30.0%
! TAACAAAGATTGTGGACTAA+TGG + Chr7:40318285-40318304 MsG0780038111.01.T01:CDS 30.0%
! TATTAAGAGTGCATGATTGT+GGG - Chr7:40318405-40318424 None:intergenic 30.0%
! TTACATCATGCTTGGTAATT+GGG + Chr7:40317119-40317138 MsG0780038111.01.T01:intron 30.0%
!!! CATTTGAGTTTTGAGTTAAG+TGG - Chr7:40318551-40318570 None:intergenic 30.0%
AAATTACACTCCTAGTAGCT+AGG - Chr7:40318633-40318652 None:intergenic 35.0%
AATGATTCAGAACAGCTCAA+AGG - Chr7:40316858-40316877 None:intergenic 35.0%
AGAAACATGTGAGAGTGATT+TGG + Chr7:40316743-40316762 MsG0780038111.01.T01:CDS 35.0%
ATTAGTGATTGTGGCATGTT+TGG - Chr7:40317628-40317647 None:intergenic 35.0%
CAAACCATCATTAGTGATTG+TGG - Chr7:40317637-40317656 None:intergenic 35.0%
CACAATCACTAATGATGGTT+TGG + Chr7:40317635-40317654 MsG0780038111.01.T01:intron 35.0%
CACATAAACTAACCGAATAG+AGG - Chr7:40317009-40317028 None:intergenic 35.0%
CCGTAATTTCGACAAAATCA+CGG - Chr7:40317531-40317550 None:intergenic 35.0%
GAAACATGTGAGAGTGATTT+GGG + Chr7:40316744-40316763 MsG0780038111.01.T01:CDS 35.0%
GTAGGAAATGTGAATTAGAG+GGG - Chr7:40317699-40317718 None:intergenic 35.0%
GTTCATCTGAGAGACTTAAA+GGG - Chr7:40316530-40316549 None:intergenic 35.0%
TATCCCTCCAAAGTAAAGAA+AGG - Chr7:40317159-40317178 None:intergenic 35.0%
TCATGCACTCTTAATAGTGA+TGG + Chr7:40318409-40318428 MsG0780038111.01.T01:CDS 35.0%
TCTGAATCATCTGGTAACAA+AGG - Chr7:40316726-40316745 None:intergenic 35.0%
TGTTCATCTGAGAGACTTAA+AGG - Chr7:40316531-40316550 None:intergenic 35.0%
TTACATTCACACGGTTACTT+GGG + Chr7:40318342-40318361 MsG0780038111.01.T01:CDS 35.0%
! AACTTTTGTCGAAATCAAGG+TGG - Chr7:40317558-40317577 None:intergenic 35.0%
! AAGGTGGCTCTGTATATATT+TGG + Chr7:40317500-40317519 MsG0780038111.01.T01:intron 35.0%
! AAGTAAAGATTGGTGCTTTG+AGG - Chr7:40318489-40318508 None:intergenic 35.0%
! AATCATGTCAATGGATTTCC+TGG + Chr7:40316953-40316972 MsG0780038111.01.T01:intron 35.0%
! ACAGAAACAGCACTTACTTT+TGG - Chr7:40318158-40318177 None:intergenic 35.0%
! CCGTGATTTTGTCGAAATTA+CGG + Chr7:40317528-40317547 MsG0780038111.01.T01:intron 35.0%
! CTATTAAGAGTGCATGATTG+TGG - Chr7:40318406-40318425 None:intergenic 35.0%
! CTTACATCATGCTTGGTAAT+TGG + Chr7:40317118-40317137 MsG0780038111.01.T01:intron 35.0%
! GATGTGGTTTATTGCTATTG+TGG + Chr7:40316819-40316838 MsG0780038111.01.T01:intron 35.0%
! TACATCATGCTTGGTAATTG+GGG + Chr7:40317120-40317139 MsG0780038111.01.T01:intron 35.0%
! TATTAGTCTATCGCAGAATC+TGG + Chr7:40318731-40318750 MsG0780038111.01.T01:three_prime_UTR 35.0%
! TCACATGTTTCTGAATCATC+TGG - Chr7:40316735-40316754 None:intergenic 35.0%
!! AGAATAAGGGCATTGAAACA+TGG - Chr7:40316372-40316391 None:intergenic 35.0%
!! GAAAGGCTTTGAAAGTTAGA+GGG + Chr7:40316766-40316785 MsG0780038111.01.T01:CDS 35.0%
!! TCTTAAGCAACAGCTTGTTT+TGG - Chr7:40317435-40317454 None:intergenic 35.0%
ACAACATCTGTAGCCACATT+TGG + Chr7:40317744-40317763 MsG0780038111.01.T01:intron 40.0%
ACACCAAATCCATCTTCACA+AGG + Chr7:40316462-40316481 MsG0780038111.01.T01:CDS 40.0%
ACCACATCACAAGTCTCATT+AGG - Chr7:40316807-40316826 None:intergenic 40.0%
ACCTAATGAGACTTGTGATG+TGG + Chr7:40316803-40316822 MsG0780038111.01.T01:CDS 40.0%
AGTAGCAGCAATCATGTCAA+TGG + Chr7:40316944-40316963 MsG0780038111.01.T01:intron 40.0%
ATAGGTAGAGACAGATAGCA+AGG - Chr7:40316408-40316427 None:intergenic 40.0%
CATGCCACAATCACTAATGA+TGG + Chr7:40317630-40317649 MsG0780038111.01.T01:intron 40.0%
CATGGCTTCTTGCTAAGAAT+AGG + Chr7:40318314-40318333 MsG0780038111.01.T01:CDS 40.0%
CTCTCAGATGAACACTTCAA+TGG + Chr7:40316537-40316556 MsG0780038111.01.T01:CDS 40.0%
CTTACATTCACACGGTTACT+TGG + Chr7:40318341-40318360 MsG0780038111.01.T01:CDS 40.0%
TAGGACAGCTTACATTCACA+CGG + Chr7:40318333-40318352 MsG0780038111.01.T01:CDS 40.0%
TCAGAAGAATCAACAGCAAG+AGG - Chr7:40318439-40318458 None:intergenic 40.0%
! AACATCAGCTTGTTCAGGAA+AGG - Chr7:40316499-40316518 None:intergenic 40.0%
! ATGTGAGAGTGATTTGGGAA+AGG + Chr7:40316749-40316768 MsG0780038111.01.T01:CDS 40.0%
! GTGGACTAATGGGATTAACA+TGG + Chr7:40318296-40318315 MsG0780038111.01.T01:CDS 40.0%
! GTTCCTTGTGAAGATGGATT+TGG - Chr7:40316468-40316487 None:intergenic 40.0%
! TGGTAACAAAGGCATGTCAT+AGG - Chr7:40316715-40316734 None:intergenic 40.0%
!! GGAAAGGCTTTGAAAGTTAG+AGG + Chr7:40316765-40316784 MsG0780038111.01.T01:CDS 40.0%
!!! CTTGTTTTGGCATGGGAATT+GGG - Chr7:40317422-40317441 None:intergenic 40.0%
ACTGTTGCTGCATCAGGTAT+AGG - Chr7:40316432-40316451 None:intergenic 45.0%
ATCATCAGCAGCATGCTTGT+TGG - Chr7:40316589-40316608 None:intergenic 45.0%
ATTGTGGGTCAGATCCATCA+GGG - Chr7:40318390-40318409 None:intergenic 45.0%
CTGTTGCTGCATCAGGTATA+GGG - Chr7:40316431-40316450 None:intergenic 45.0%
GAACCACGGTGAATTTGACA+CGG - Chr7:40317606-40317625 None:intergenic 45.0%
GGGATTGTTCCTTGTGAAGA+TGG - Chr7:40316474-40316493 None:intergenic 45.0%
GTGCTTGCATAGCCTCTATT+CGG + Chr7:40316994-40317013 MsG0780038111.01.T01:intron 45.0%
TTCAAATCCACCAAGAGCAG+TGG - Chr7:40316676-40316695 None:intergenic 45.0%
! AGCAGCATGCTTGTTGGATT+TGG - Chr7:40316583-40316602 None:intergenic 45.0%
! CTTGCAACATCAGCTTGTTC+AGG - Chr7:40316504-40316523 None:intergenic 45.0%
! GGATGAAAGTGTGAAGCGAT+TGG + Chr7:40316907-40316926 MsG0780038111.01.T01:intron 45.0%
! GTCAATGGATTTCCTGGTCT+TGG + Chr7:40316959-40316978 MsG0780038111.01.T01:intron 45.0%
! TTGTGGCATGTTTGGAACCA+CGG - Chr7:40317620-40317639 None:intergenic 45.0%
!! AATGGATTTCCTGGTCTTGG+AGG + Chr7:40316962-40316981 MsG0780038111.01.T01:intron 45.0%
!! GAAGATGGATTTGGTGTGAG+TGG - Chr7:40316459-40316478 None:intergenic 45.0%
!! GCTCTTGGTGGATTTGAACA+TGG + Chr7:40316678-40316697 MsG0780038111.01.T01:CDS 45.0%
!!! AGCAACAGCTTGTTTTGGCA+TGG - Chr7:40317430-40317449 None:intergenic 45.0%
!!! GCAACAGCTTGTTTTGGCAT+GGG - Chr7:40317429-40317448 None:intergenic 45.0%
!!! GCTTGTTTTGGCATGGGAAT+TGG - Chr7:40317423-40317442 None:intergenic 45.0%
!! AAAATTATTATTAAAAATGT+TGG + Chr7:40317856-40317875 MsG0780038111.01.T01:intron 5.0%
ATAACCACGCAGCTAGAGCA+GGG - Chr7:40316638-40316657 None:intergenic 50.0%
GATTGTGGGTCAGATCCATC+AGG - Chr7:40318391-40318410 None:intergenic 50.0%
GCTGCATCAGGTATAGGGAT+AGG - Chr7:40316426-40316445 None:intergenic 50.0%
GCTTTGATGTTGAGCCCTGA+TGG + Chr7:40318373-40318392 MsG0780038111.01.T01:CDS 50.0%
GGTTGAACTGTTGCTGCATC+AGG - Chr7:40316438-40316457 None:intergenic 50.0%
TATAACCACGCAGCTAGAGC+AGG - Chr7:40316639-40316658 None:intergenic 50.0%
TCACCGTGTCAAATTCACCG+TGG + Chr7:40317600-40317619 MsG0780038111.01.T01:intron 50.0%
TTAGAGCAACCTCCAAGACC+AGG - Chr7:40316974-40316993 None:intergenic 50.0%
! CAGCTTGTTCAGGAAAGGCA+GGG - Chr7:40316494-40316513 None:intergenic 50.0%
! TCAGCTTGTTCAGGAAAGGC+AGG - Chr7:40316495-40316514 None:intergenic 50.0%
!! AGCTTTGGTGCCTAGCTACT+AGG + Chr7:40318620-40318639 MsG0780038111.01.T01:three_prime_UTR 50.0%
GAGCAGGGCAACATCTGCTA+CGG - Chr7:40316623-40316642 None:intergenic 55.0%
GCTTACTCTGCCACTGCTCT+TGG + Chr7:40316663-40316682 MsG0780038111.01.T01:CDS 55.0%
TACTCTGCCACTGCTCTTGG+TGG + Chr7:40316666-40316685 MsG0780038111.01.T01:CDS 55.0%
CAGGGCAACATCTGCTACGG+TGG - Chr7:40316620-40316639 None:intergenic 60.0%
GTTGCCCTGCTCTAGCTGCG+TGG + Chr7:40316631-40316650 MsG0780038111.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 40316354 40318782 40316354 ID=MsG0780038111.01;Name=MsG0780038111.01
Chr7 mRNA 40316354 40318782 40316354 ID=MsG0780038111.01.T01;Parent=MsG0780038111.01;Name=MsG0780038111.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0|0.5|1|0|0.5|2|227|265
Chr7 exon 40318229 40318782 40318229 ID=MsG0780038111.01.T01:exon:3792;Parent=MsG0780038111.01.T01
Chr7 exon 40316354 40316824 40316354 ID=MsG0780038111.01.T01:exon:3791;Parent=MsG0780038111.01.T01
Chr7 CDS 40316354 40316824 40316354 ID=MsG0780038111.01.T01:cds;Parent=MsG0780038111.01.T01
Chr7 CDS 40318229 40318555 40318229 ID=MsG0780038111.01.T01:cds;Parent=MsG0780038111.01.T01
Chr7 three_prime_UTR 40318556 40318782 40318556 ID=MsG0780038111.01.T01:three_prime_utr;Parent=MsG0780038111.01.T01
Gene Sequence

>MsG0780038111.01.T01

ATGACACTGACACTACCATGTTTCAATGCCCTTATTCTGATCTTGTTCATTCCTTGCTATCTGTCTCTACCTATCCCTATACCTGATGCAGCAACAGTTCAACCACTCACACCAAATCCATCTTCACAAGGAACAATCCCTGCCTTTCCTGAACAAGCTGATGTTGCAAGATGCCCTTTAAGTCTCTCAGATGAACACTTCAATGGAATCAAAAACGCATGCAGTTCCAAATCCAACAAGCATGCTGCTGATGATGATGAACTCCACCGTAGCAGATGTTGCCCTGCTCTAGCTGCGTGGTTATATTCTGCTTACTCTGCCACTGCTCTTGGTGGATTTGAACATGGACACACTACATCCTATGACATGCCTTTGTTACCAGATGATTCAGAAACATGTGAGAGTGATTTGGGAAAGGCTTTGAAAGTTAGAGGGATTGAACTTTTTCAACCTAATGAGACTTGTGATGTGCTTAGAAAGAAGACTTCAAATTCAAGCAAACTAGGAGATAGAACAACCAAGATCCATAACAAAGATTGTGGACTAATGGGATTAACATGGCTTCTTGCTAAGAATAGGACAGCTTACATTCACACGGTTACTTGGGTTCTTCGTGCTTTGATGTTGAGCCCTGATGGATCTGACCCACAATCATGCACTCTTAATAGTGATGGAATGCCTCTTGCTGTTGATTCTTCTGAAATGTATGATCAATCTTCATCAATCAACCTCAAAGCACCAATCTTTACTTCTTTGTTATTTCTACTACCTATGCATTTCATTCTATTATCCACTTAA
Protein sequence

>MsG0780038111.01.T01

MTLTLPCFNALILILFIPCYLSLPIPIPDAATVQPLTPNPSSQGTIPAFPEQADVARCPLSLSDEHFNGIKNACSSKSNKHAADDDELHRSRCCPALAAWLYSAYSATALGGFEHGHTTSYDMPLLPDDSETCESDLGKALKVRGIELFQPNETCDVLRKKTSNSSKLGDRTTKIHNKDCGLMGLTWLLAKNRTAYIHTVTWVLRALMLSPDGSDPQSCTLNSDGMPLAVDSSEMYDQSSSINLKAPIFTSLLFLLPMHFILLST*