AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037372.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037372.01.T01 MTR_7g032640 99.459 370 2 0 121 490 1 370 0.0 769
MsG0780037372.01.T01 MTR_3g075410 76.517 379 79 2 121 489 1 379 0.0 608
MsG0780037372.01.T01 MTR_7g017430 65.416 373 105 2 121 484 1 358 4.33e-177 502
MsG0780037372.01.T01 MTR_6g018930 57.880 368 110 4 121 458 1 353 6.49e-149 430
MsG0780037372.01.T01 MTR_8g037335 61.538 273 100 2 121 388 1 273 2.15e-119 354
MsG0780037372.01.T01 MTR_5g029210 61.538 273 100 2 121 388 1 273 2.87e-117 350
MsG0780037372.01.T01 MTR_4g125660 24.062 320 187 9 114 394 6 308 3.02e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037372.01.T01 AT5G14390 76.455 378 70 6 121 489 1 368 0.0 585
MsG0780037372.01.T01 AT3G01690 77.027 370 74 4 121 489 1 360 0.0 580
MsG0780037372.01.T01 AT4G24760 72.043 372 92 6 121 489 1 363 0.0 548
MsG0780037372.01.T01 AT3G30380 64.151 371 116 5 121 487 1 358 5.44e-171 486
MsG0780037372.01.T01 AT3G30380 64.850 367 112 5 121 483 1 354 1.38e-170 486
MsG0780037372.01.T01 AT5G38220 62.883 326 107 3 121 434 1 324 5.81e-152 436
MsG0780037372.01.T01 AT5G38220 62.883 326 107 3 121 434 1 324 5.81e-152 436
MsG0780037372.01.T01 AT1G66900 69.118 272 78 2 121 386 1 272 2.70e-141 407
MsG0780037372.01.T01 AT4G31020 66.920 263 87 0 121 383 1 263 2.90e-132 385
MsG0780037372.01.T01 AT4G31020 66.920 263 87 0 121 383 1 263 2.90e-132 385
MsG0780037372.01.T01 AT1G13610 53.846 377 120 8 121 489 1 331 2.18e-130 382
MsG0780037372.01.T01 AT2G24320 62.357 263 98 1 121 383 1 262 1.30e-126 370
MsG0780037372.01.T01 AT2G24320 62.109 256 96 1 128 383 1 255 1.22e-122 360
MsG0780037372.01.T01 AT1G32190 55.797 276 113 1 121 387 1 276 6.13e-109 330
MsG0780037372.01.T01 AT5G38220 70.192 208 60 1 121 328 1 206 4.34e-108 321
MsG0780037372.01.T01 AT1G13610 50.617 243 95 3 235 462 18 250 4.94e-76 239
MsG0780037372.01.T01 AT1G32190 60.390 154 61 0 234 387 38 191 1.43e-62 207

Find 102 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGGCAACGCTGCTGATC+TGG 0.206070 7:+24524508 MsG0780037372.01.T01:CDS
TTGCACAGTCCAATACTTTC+TGG 0.217252 7:+24526363 MsG0780037372.01.T01:CDS
GAAGAGGCTCTTTGTTTCTA+TGG 0.221902 7:-24524045 None:intergenic
TGTTGCAGGTATGATTATTC+TGG 0.230487 7:+24526060 MsG0780037372.01.T01:intron
CTTCAATTGTTTAATCACTA+TGG 0.238111 7:+24527880 MsG0780037372.01.T01:three_prime_UTR
TTAACACCCATGAAAGAAAA+AGG 0.271420 7:+24523886 MsG0780037372.01.T01:five_prime_UTR
GTCCAATACTTTCTGGCTTA+AGG 0.292115 7:+24526370 MsG0780037372.01.T01:CDS
AACCAGTATGAACGCTTTAC+TGG 0.303616 7:-24526402 None:intergenic
TGAGTGAAGGAGTGCTTTAT+TGG 0.304688 7:-24523978 None:intergenic
CAAGAAGATATAATCCTTTA+CGG 0.308045 7:+24526273 MsG0780037372.01.T01:CDS
GTTGATCATCAATTAGAAAA+AGG 0.324209 7:+24527549 MsG0780037372.01.T01:CDS
TTGACCGACTCGACAGAATA+AGG 0.327499 7:+24527583 MsG0780037372.01.T01:CDS
TCCAATACTTTCTGGCTTAA+GGG 0.333040 7:+24526371 MsG0780037372.01.T01:CDS
CACTATTGGCATTGAAGAAA+AGG 0.360569 7:+24527704 MsG0780037372.01.T01:three_prime_UTR
CTATGGAATGGATTATGTTA+TGG 0.363829 7:-24524028 None:intergenic
ATACTGGTTTGACATATATA+AGG 0.371998 7:+24526416 MsG0780037372.01.T01:CDS
AAATGTCTCGAAGAAAGTTT+TGG 0.379705 7:+24526243 MsG0780037372.01.T01:CDS
AGTTTGTATGATGGTGGGTT+TGG 0.380408 7:-24524335 None:intergenic
GTTCCCACGGTAAGCAACTC+TGG 0.399048 7:+24527151 MsG0780037372.01.T01:CDS
CTAATCAAAGATGATTTAAC+AGG 0.400554 7:+24524356 MsG0780037372.01.T01:CDS
GGTTTGTCTGTGCTCTTCCT+TGG 0.400736 7:-24527402 None:intergenic
GGCTCTTTGTTTCTATGGAA+TGG 0.405346 7:-24524040 None:intergenic
TGTTGGAAGTGGCCCGACTT+TGG 0.409126 7:+24526302 MsG0780037372.01.T01:CDS
AAAATATCTGTACTCTTTCG+AGG 0.411766 7:-24527342 None:intergenic
AGCTCTTTCCCGAGTACATA+AGG 0.413590 7:+24527235 MsG0780037372.01.T01:CDS
ATTAGACCACTTTCAACCCT+TGG 0.420447 7:-24523951 None:intergenic
AAAAGGTTTGATGTTACAAT+GGG 0.420826 7:+24527721 MsG0780037372.01.T01:three_prime_UTR
CTTCAGATGCCTTATGTACT+CGG 0.422463 7:-24527244 None:intergenic
GTTGCAGGTATGATTATTCT+GGG 0.427239 7:+24526061 MsG0780037372.01.T01:intron
TTGTATGATGGTGGGTTTGG+TGG 0.435014 7:-24524332 None:intergenic
TCACTTGCGTGTTAATCTCA+TGG 0.440773 7:+24524565 MsG0780037372.01.T01:CDS
CATGGCAACGCTGCTGATCT+GGG 0.446287 7:+24524509 MsG0780037372.01.T01:CDS
TGTGTAGTTTGATACACTAT+TGG 0.454991 7:+24527690 MsG0780037372.01.T01:three_prime_UTR
TCAACTCTTCTTTACTCTCA+TGG 0.455337 7:+24524491 MsG0780037372.01.T01:CDS
TTGATTAGTTTGTATGATGG+TGG 0.458180 7:-24524341 None:intergenic
CACTTGCGTGTTAATCTCAT+GGG 0.459036 7:+24524566 MsG0780037372.01.T01:CDS
CTTACATGAACTATGAGAAC+TGG 0.461132 7:-24526552 None:intergenic
ATCCAGTAAAGCGTTCATAC+TGG 0.462552 7:+24526400 MsG0780037372.01.T01:CDS
TATATTCGTGCACACGGGAT+TGG 0.470458 7:+24527633 MsG0780037372.01.T01:three_prime_UTR
GAAAAGGTTTGATGTTACAA+TGG 0.480207 7:+24527720 MsG0780037372.01.T01:three_prime_UTR
TCTTTCGAGGCTGCTCAAAC+TGG 0.480744 7:-24527329 None:intergenic
TGATTAGTTTGTATGATGGT+GGG 0.484762 7:-24524340 None:intergenic
TGTTTATTGCTTTGAGAGTG+AGG 0.486253 7:-24524004 None:intergenic
TTTATGTTTATGTGATGGGT+GGG 0.490044 7:+24524273 MsG0780037372.01.T01:CDS
TTCAATTGTTTAATCACTAT+GGG 0.491491 7:+24527881 MsG0780037372.01.T01:three_prime_UTR
TCTGGGTACGGACAGTCGTC+AGG 0.495232 7:+24526078 MsG0780037372.01.T01:CDS
ATTGTTTATGTTTATGTGAT+GGG 0.495708 7:+24524269 MsG0780037372.01.T01:CDS
CAAACTGGTCTGTACTCCTT+CGG 0.496493 7:-24527314 None:intergenic
TTGAAGAAGAGAAGAAGATG+AGG 0.496715 7:-24524127 None:intergenic
ATCCTTTACGGACAATCTGT+TGG 0.497874 7:+24526285 MsG0780037372.01.T01:CDS
ACCCTTAAGCCAGAAAGTAT+TGG 0.501968 7:-24526372 None:intergenic
GAGAGTGAGGGAGTGAGTGA+AGG 0.512346 7:-24523991 None:intergenic
GTTTATGTTTATGTGATGGG+TGG 0.518014 7:+24524272 MsG0780037372.01.T01:CDS
GTTTATTGCTTTGAGAGTGA+GGG 0.518471 7:-24524003 None:intergenic
TACGGACAATCTGTTGGAAG+TGG 0.524349 7:+24526291 MsG0780037372.01.T01:CDS
TTCAGATGCCTTATGTACTC+GGG 0.527427 7:-24527243 None:intergenic
CATTGTTTATGTTTATGTGA+TGG 0.527883 7:+24524268 MsG0780037372.01.T01:CDS
CGACTTTGGATCTTGCAGCT+AGG 0.528104 7:+24526316 MsG0780037372.01.T01:CDS
TCTTTGATTAGTTTGTATGA+TGG 0.531059 7:-24524344 None:intergenic
GAATATGTATTCTGCTCACT+TGG 0.534786 7:-24526201 None:intergenic
TAGCTGCAAGATCCAAAGTC+GGG 0.536628 7:-24526314 None:intergenic
AGGTATGATTATTCTGGGTA+CGG 0.542672 7:+24526066 MsG0780037372.01.T01:intron
GTGAATTGAGTTAGATCTTG+TGG 0.543169 7:-24524158 None:intergenic
AGAAGAGTTGAAGTAGCCAT+TGG 0.544121 7:-24524479 None:intergenic
TTGATCATAAAGAGAGATCT+CGG 0.544423 7:+24527490 MsG0780037372.01.T01:CDS
AAAACAACAGCTCGTAATTG+AGG 0.546917 7:-24526342 None:intergenic
GGGTGGGGTAACATCATCAA+TGG 0.550605 7:+24524289 MsG0780037372.01.T01:CDS
TTATGTTTATGTGATGGGTG+GGG 0.550727 7:+24524274 MsG0780037372.01.T01:CDS
TGGAAATGGAAAGGGAAAGA+AGG 0.556785 7:-24524079 None:intergenic
TTCCAACAGATTGTCCGTAA+AGG 0.559246 7:-24526287 None:intergenic
TACGAACCACTGTGGCTCAA+AGG 0.565306 7:+24527192 MsG0780037372.01.T01:CDS
TGTTTATGTTCGTCATCCAA+TGG 0.571569 7:+24524463 MsG0780037372.01.T01:CDS
TTCCCAGAGTTGCTTACCGT+GGG 0.572357 7:-24527154 None:intergenic
GAGCACAGACAAACCAGAGA+AGG 0.574334 7:+24527410 MsG0780037372.01.T01:CDS
ACAATAGCATGCGAGATCCA+AGG 0.576177 7:+24523934 MsG0780037372.01.T01:CDS
CAATAGCATGCGAGATCCAA+GGG 0.576869 7:+24523935 MsG0780037372.01.T01:CDS
GAATATAACTTCAATACAAG+AGG 0.577545 7:-24527617 None:intergenic
AACTCGTCTTCTAGTAATGG+TGG 0.577907 7:+24527438 MsG0780037372.01.T01:CDS
TTCCCACGGTAAGCAACTCT+GGG 0.578420 7:+24527152 MsG0780037372.01.T01:CDS
TAGTAATGGTGGTGATATGT+TGG 0.589614 7:+24527449 MsG0780037372.01.T01:CDS
ATGAAACTTTCGACGCGTCG+AGG 0.590434 7:+24524425 MsG0780037372.01.T01:CDS
TGAAGTTATATTCGTGCACA+CGG 0.590534 7:+24527627 MsG0780037372.01.T01:three_prime_UTR
GAAGGTGATAGTGAAAGAAG+AGG 0.594237 7:-24524061 None:intergenic
ACTTTCGACGCGTCGAGGAA+CGG 0.595538 7:+24524430 MsG0780037372.01.T01:CDS
GAAGTTGTAGATTGTTCCCA+CGG 0.597143 7:+24527138 MsG0780037372.01.T01:CDS
CGAGATCCAAGGGTTGAAAG+TGG 0.610263 7:+24523945 MsG0780037372.01.T01:CDS
CGCAAAGATACAGTTTCCGA+AGG 0.613831 7:+24527298 MsG0780037372.01.T01:CDS
CGGAAACTGTATCTTTGCGA+CGG 0.615327 7:-24527294 None:intergenic
CTAGCTGCAAGATCCAAAGT+CGG 0.626114 7:-24526315 None:intergenic
GAAGTTATATTCGTGCACAC+GGG 0.626240 7:+24527628 MsG0780037372.01.T01:three_prime_UTR
GTTCCCAGAGTTGCTTACCG+TGG 0.632356 7:-24527155 None:intergenic
GTACGGACAGTCGTCAGGAA+AGG 0.635204 7:+24526083 MsG0780037372.01.T01:CDS
CAGTCCTTATTCTGTCGAGT+CGG 0.637149 7:-24527587 None:intergenic
CTGATCGTAGAGAAAAGCCA+AGG 0.642341 7:+24527385 MsG0780037372.01.T01:CDS
CGACTCGACAGAATAAGGAC+TGG 0.649791 7:+24527588 MsG0780037372.01.T01:CDS
AGAACTGGACAATTAACTAG+TGG 0.652581 7:-24526537 None:intergenic
GAATACATATTCAGATATCG+AGG 0.657030 7:+24526212 MsG0780037372.01.T01:CDS
TTACCTCCTTTGAGCCACAG+TGG 0.679149 7:-24527198 None:intergenic
GAACCACTGTGGCTCAAAGG+AGG 0.681241 7:+24527195 MsG0780037372.01.T01:CDS
ACTTGCGTGTTAATCTCATG+GGG 0.684633 7:+24524567 MsG0780037372.01.T01:CDS
GAAAGAGCTCTAAATCGCAG+TGG 0.717582 7:-24527221 None:intergenic
AAGAGAAATACGAACCACTG+TGG 0.749682 7:+24527184 MsG0780037372.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAATAACTTATACAT+AGG - Chr7:24525168-24525187 None:intergenic 10.0%
!!! AACTAAAAAATGTTTTTTTT+TGG + Chr7:24525585-24525604 MsG0780037372.01.T01:intron 10.0%
!!! ACTAAAAAATGTTTTTTTTT+GGG + Chr7:24525586-24525605 MsG0780037372.01.T01:intron 10.0%
!!! TATATAATATTCTTCTTTTT+TGG + Chr7:24524744-24524763 MsG0780037372.01.T01:intron 10.0%
!!! TATGTAAAATTTTCTTTTTT+TGG + Chr7:24524690-24524709 MsG0780037372.01.T01:intron 10.0%
!!! TTTTTAAAAGAGAAAAATAA+AGG - Chr7:24527841-24527860 None:intergenic 10.0%
!! CATAAAATAAATAAGTTGTT+TGG - Chr7:24524965-24524984 None:intergenic 15.0%
!!! AATTTTCTTTTTTTGGTTTT+TGG + Chr7:24524697-24524716 MsG0780037372.01.T01:intron 15.0%
!!! TCATTTCATTTTGAATATTT+GGG + Chr7:24526789-24526808 MsG0780037372.01.T01:intron 15.0%
!!! TTCATTTCATTTTGAATATT+TGG + Chr7:24526788-24526807 MsG0780037372.01.T01:intron 15.0%
!! ATTGTTTATGTTTATGTGAT+GGG + Chr7:24524269-24524288 MsG0780037372.01.T01:CDS 20.0%
!! CAATACTTCATTACAAAAAT+CGG - Chr7:24525640-24525659 None:intergenic 20.0%
!! CTGAATTTAGTCAAAAAATA+CGG - Chr7:24526851-24526870 None:intergenic 20.0%
!! TCATCTATCAAATATATGTA+TGG - Chr7:24526158-24526177 None:intergenic 20.0%
!! TTCAATTGTTTAATCACTAT+GGG + Chr7:24527881-24527900 MsG0780037372.01.T01:three_prime_UTR 20.0%
!!! AACTAAACTACTTTTTATGA+TGG - Chr7:24524102-24524121 None:intergenic 20.0%
!!! GTTTGGAATTTGAAATTTAT+AGG + Chr7:24524655-24524674 MsG0780037372.01.T01:intron 20.0%
!!! TAATGAAGTATTGAATTTGA+AGG + Chr7:24525647-24525666 MsG0780037372.01.T01:intron 20.0%
!!! TGTCAATATTTTTGTTGTAA+CGG + Chr7:24527069-24527088 MsG0780037372.01.T01:intron 20.0%
!!! TTGAAAATTTTGCTTCATTT+TGG + Chr7:24525016-24525035 MsG0780037372.01.T01:intron 20.0%
! AAAAGGTTTGATGTTACAAT+GGG + Chr7:24527721-24527740 MsG0780037372.01.T01:three_prime_UTR 25.0%
! AAAATCAATAGAAAGGAAAC+TGG - Chr7:24526745-24526764 None:intergenic 25.0%
! AATGACATGAAAGATATAGT+TGG - Chr7:24527101-24527120 None:intergenic 25.0%
! ATATTCTGCATATATGAACA+CGG - Chr7:24526507-24526526 None:intergenic 25.0%
! ATCATCAATTAGAAAAAGGA+AGG + Chr7:24527553-24527572 MsG0780037372.01.T01:CDS 25.0%
! CAAACATGTTTATTATGCTA+TGG + Chr7:24526582-24526601 MsG0780037372.01.T01:intron 25.0%
! CAAGAAGATATAATCCTTTA+CGG + Chr7:24526273-24526292 MsG0780037372.01.T01:CDS 25.0%
! CATTGTTTATGTTTATGTGA+TGG + Chr7:24524268-24524287 MsG0780037372.01.T01:CDS 25.0%
! CTAATCAAAGATGATTTAAC+AGG + Chr7:24524356-24524375 MsG0780037372.01.T01:CDS 25.0%
! CTTCAATTGTTTAATCACTA+TGG + Chr7:24527880-24527899 MsG0780037372.01.T01:three_prime_UTR 25.0%
! GAATATAACTTCAATACAAG+AGG - Chr7:24527620-24527639 None:intergenic 25.0%
! GTTGATCATCAATTAGAAAA+AGG + Chr7:24527549-24527568 MsG0780037372.01.T01:CDS 25.0%
! TCTCATTAGATTAAGGAATT+AGG - Chr7:24526479-24526498 None:intergenic 25.0%
!! ATATCTTTCATGTCATTTGT+AGG + Chr7:24527104-24527123 MsG0780037372.01.T01:intron 25.0%
!! TATCTTTCATGTCATTTGTA+GGG + Chr7:24527105-24527124 MsG0780037372.01.T01:intron 25.0%
!! TTTTTCCCTTTTTCTTTCAT+GGG - Chr7:24523895-24523914 None:intergenic 25.0%
!!! AAGTATTGAATTTGAAGGTA+TGG + Chr7:24525652-24525671 MsG0780037372.01.T01:intron 25.0%
!!! ACTACTTTTTATGATGGAAA+TGG - Chr7:24524096-24524115 None:intergenic 25.0%
!!! ATACTGGTTTGACATATATA+AGG + Chr7:24526416-24526435 MsG0780037372.01.T01:CDS 25.0%
!!! TATCTCTTTCAAGTAGTTTT+TGG + Chr7:24524606-24524625 MsG0780037372.01.T01:intron 25.0%
!!! TCATTTTGGTTTTTGGTTTT+TGG + Chr7:24525030-24525049 MsG0780037372.01.T01:intron 25.0%
!!! TCCTTTCTATTGATTTTCTT+TGG + Chr7:24526748-24526767 MsG0780037372.01.T01:intron 25.0%
!!! TCTTTGATTAGTTTGTATGA+TGG - Chr7:24524347-24524366 None:intergenic 25.0%
!!! TGATTTGGAATTTTGAGAAA+TGG + Chr7:24525098-24525117 MsG0780037372.01.T01:intron 25.0%
!!! TTTTATGATGGAAATGGAAA+GGG - Chr7:24524090-24524109 None:intergenic 25.0%
!!! TTTTGCTTCATTTTGGTTTT+TGG + Chr7:24525023-24525042 MsG0780037372.01.T01:intron 25.0%
!!! TTTTTATGATGGAAATGGAA+AGG - Chr7:24524091-24524110 None:intergenic 25.0%
!!! TTTTTTGTTGTTGTGCTTTT+GGG + Chr7:24524633-24524652 MsG0780037372.01.T01:intron 25.0%
!!! TTTTTTTGTTGTTGTGCTTT+TGG + Chr7:24524632-24524651 MsG0780037372.01.T01:intron 25.0%
AAAAACTCGTCTTCTAGTAA+TGG + Chr7:24527435-24527454 MsG0780037372.01.T01:CDS 30.0%
AAAATATCTGTACTCTTTCG+AGG - Chr7:24527345-24527364 None:intergenic 30.0%
ACCTGAACAAAACTAGAAAA+TGG + Chr7:24525321-24525340 MsG0780037372.01.T01:intron 30.0%
AGAAGAGTCTAAAAAATGGT+AGG - Chr7:24526945-24526964 None:intergenic 30.0%
CATTGTTTGAATTGTGTTGT+TGG + Chr7:24525691-24525710 MsG0780037372.01.T01:intron 30.0%
CCTGAACAAAACTAGAAAAT+GGG + Chr7:24525322-24525341 MsG0780037372.01.T01:intron 30.0%
CTGAACAAAACTAGAAAATG+GGG + Chr7:24525323-24525342 MsG0780037372.01.T01:intron 30.0%
GAAAAGGTTTGATGTTACAA+TGG + Chr7:24527720-24527739 MsG0780037372.01.T01:three_prime_UTR 30.0%
GAATACATATTCAGATATCG+AGG + Chr7:24526212-24526231 MsG0780037372.01.T01:CDS 30.0%
GAGTTTATATACTGACAAAC+AGG - Chr7:24525545-24525564 None:intergenic 30.0%
GCCAAAGAAAATCAATAGAA+AGG - Chr7:24526752-24526771 None:intergenic 30.0%
GTGAAGAAGAGTCTAAAAAA+TGG - Chr7:24526949-24526968 None:intergenic 30.0%
GTGATAACTTGAACTTCAAA+TGG - Chr7:24527041-24527060 None:intergenic 30.0%
TAACACCCATGAAAGAAAAA+GGG + Chr7:24523887-24523906 MsG0780037372.01.T01:five_prime_UTR 30.0%
TAGTCAAAAAATACGGATCT+TGG - Chr7:24526844-24526863 None:intergenic 30.0%
TATTCTGCATATATGAACAC+GGG - Chr7:24526506-24526525 None:intergenic 30.0%
TGTGTAGTTTGATACACTAT+TGG + Chr7:24527690-24527709 MsG0780037372.01.T01:three_prime_UTR 30.0%
TTAACACCCATGAAAGAAAA+AGG + Chr7:24523886-24523905 MsG0780037372.01.T01:five_prime_UTR 30.0%
TTGATCATAAAGAGAGATCT+CGG + Chr7:24527490-24527509 MsG0780037372.01.T01:CDS 30.0%
! AAATGTCTCGAAGAAAGTTT+TGG + Chr7:24526243-24526262 MsG0780037372.01.T01:CDS 30.0%
! AATTGTGTTGTTGGATTTCA+TGG + Chr7:24525700-24525719 MsG0780037372.01.T01:intron 30.0%
! CTTTTTCCCTTTTTCTTTCA+TGG - Chr7:24523896-24523915 None:intergenic 30.0%
! TACTGTGTTTTGTAAGTGAT+TGG + Chr7:24525122-24525141 MsG0780037372.01.T01:intron 30.0%
! TCATAATCTCAACGTTTTCA+CGG - Chr7:24524409-24524428 None:intergenic 30.0%
! TTTTCATAAGCTAGCTATCA+TGG + Chr7:24524841-24524860 MsG0780037372.01.T01:intron 30.0%
! TTTTGCATAGACATAACTTC+TGG + Chr7:24526628-24526647 MsG0780037372.01.T01:intron 30.0%
! TTTTGCTGAAAACATAATGC+TGG + Chr7:24527784-24527803 MsG0780037372.01.T01:three_prime_UTR 30.0%
!! CTATGGAATGGATTATGTTA+TGG - Chr7:24524031-24524050 None:intergenic 30.0%
!! GCTAAGTTATAATTTGTTGC+AGG + Chr7:24526046-24526065 MsG0780037372.01.T01:intron 30.0%
!! TGATTAGTTTGTATGATGGT+GGG - Chr7:24524343-24524362 None:intergenic 30.0%
!! TTGATTAGTTTGTATGATGG+TGG - Chr7:24524344-24524363 None:intergenic 30.0%
!! TTTATGTTTATGTGATGGGT+GGG + Chr7:24524273-24524292 MsG0780037372.01.T01:CDS 30.0%
!!! TCTGACATATTTGTTTTGTC+TGG + Chr7:24526667-24526686 MsG0780037372.01.T01:intron 30.0%
!!! TGGTATTGATGCTATTTTCA+AGG + Chr7:24525726-24525745 MsG0780037372.01.T01:intron 30.0%
!!! TGGTTTTTGGTTTTTGGTTT+CGG + Chr7:24525036-24525055 MsG0780037372.01.T01:intron 30.0%
!!! TTTTTTTCTTTTGACACCCT+TGG + Chr7:24526718-24526737 MsG0780037372.01.T01:intron 30.0%
AAAACAACAGCTCGTAATTG+AGG - Chr7:24526345-24526364 None:intergenic 35.0%
AGAACTGGACAATTAACTAG+TGG - Chr7:24526540-24526559 None:intergenic 35.0%
AGGTATGATTATTCTGGGTA+CGG + Chr7:24526066-24526085 MsG0780037372.01.T01:intron 35.0%
AGTGTTCTCATAAGCTATTG+TGG + Chr7:24525432-24525451 MsG0780037372.01.T01:intron 35.0%
ATGTGACGTGAACATAAACT+TGG - Chr7:24525847-24525866 None:intergenic 35.0%
ATTGTTCTTGTAAGCTATCG+TGG + Chr7:24525232-24525251 MsG0780037372.01.T01:intron 35.0%
CAAGTAGTGTAACAAAGGAT+AGG - Chr7:24526971-24526990 None:intergenic 35.0%
CTTACATGAACTATGAGAAC+TGG - Chr7:24526555-24526574 None:intergenic 35.0%
GAATATGTATTCTGCTCACT+TGG - Chr7:24526204-24526223 None:intergenic 35.0%
GCAAACAAGTAGTGTAACAA+AGG - Chr7:24526976-24526995 None:intergenic 35.0%
GTGAATTGAGTTAGATCTTG+TGG - Chr7:24524161-24524180 None:intergenic 35.0%
GTTGCAGGTATGATTATTCT+GGG + Chr7:24526061-24526080 MsG0780037372.01.T01:intron 35.0%
GTTGTTGGATTTCATGGAAT+TGG + Chr7:24525706-24525725 MsG0780037372.01.T01:intron 35.0%
TCAACTCTTCTTTACTCTCA+TGG + Chr7:24524491-24524510 MsG0780037372.01.T01:CDS 35.0%
TGAAGTTATATTCGTGCACA+CGG + Chr7:24527627-24527646 MsG0780037372.01.T01:three_prime_UTR 35.0%
TGTTGCAGGTATGATTATTC+TGG + Chr7:24526060-24526079 MsG0780037372.01.T01:intron 35.0%
TGTTTATGTTCGTCATCCAA+TGG + Chr7:24524463-24524482 MsG0780037372.01.T01:CDS 35.0%
TTCATTACAAAAATCGGACG+TGG - Chr7:24525634-24525653 None:intergenic 35.0%
TTGAAGAAGAGAAGAAGATG+AGG - Chr7:24524130-24524149 None:intergenic 35.0%
! CACTATTGGCATTGAAGAAA+AGG + Chr7:24527704-24527723 MsG0780037372.01.T01:three_prime_UTR 35.0%
! CCAGAAATTTTCATCACGAA+GGG - Chr7:24525934-24525953 None:intergenic 35.0%
! GTTTATGTTTATGTGATGGG+TGG + Chr7:24524272-24524291 MsG0780037372.01.T01:CDS 35.0%
! TAGTAATGGTGGTGATATGT+TGG + Chr7:24527449-24527468 MsG0780037372.01.T01:CDS 35.0%
! TCCAGAAATTTTCATCACGA+AGG - Chr7:24525935-24525954 None:intergenic 35.0%
! TGTTTTGTGAAGTGTGAAGA+TGG - Chr7:24524183-24524202 None:intergenic 35.0%
!! GTTTATTGCTTTGAGAGTGA+GGG - Chr7:24524006-24524025 None:intergenic 35.0%
!! TCCAATACTTTCTGGCTTAA+GGG + Chr7:24526371-24526390 MsG0780037372.01.T01:CDS 35.0%
!! TGTTTATTGCTTTGAGAGTG+AGG - Chr7:24524007-24524026 None:intergenic 35.0%
!! TTATGTTTATGTGATGGGTG+GGG + Chr7:24524274-24524293 MsG0780037372.01.T01:CDS 35.0%
!!! CATTTCGCTTGTATCGATTT+TGG - Chr7:24527011-24527030 None:intergenic 35.0%
!!! CCCATTTTCTAGTTTTGTTC+AGG - Chr7:24525325-24525344 None:intergenic 35.0%
!!! GGTTTTTGGTTTTTGGTTTC+GGG + Chr7:24525037-24525056 MsG0780037372.01.T01:intron 35.0%
AACCAGTATGAACGCTTTAC+TGG - Chr7:24526405-24526424 None:intergenic 40.0%
AACTCGTCTTCTAGTAATGG+TGG + Chr7:24527438-24527457 MsG0780037372.01.T01:CDS 40.0%
AAGAGAAATACGAACCACTG+TGG + Chr7:24527184-24527203 MsG0780037372.01.T01:CDS 40.0%
ACTTGCGTGTTAATCTCATG+GGG + Chr7:24524567-24524586 MsG0780037372.01.T01:CDS 40.0%
AGAAGAGTTGAAGTAGCCAT+TGG - Chr7:24524482-24524501 None:intergenic 40.0%
AGTGCGAAATGAGGATTTGT+GGG + Chr7:24525075-24525094 MsG0780037372.01.T01:intron 40.0%
ATAGAAAGGAAACTGGACCA+AGG - Chr7:24526738-24526757 None:intergenic 40.0%
ATATACTGACAAACAGGTGC+AGG - Chr7:24525539-24525558 None:intergenic 40.0%
ATCCTTTACGGACAATCTGT+TGG + Chr7:24526285-24526304 MsG0780037372.01.T01:CDS 40.0%
ATGAGGATTTGTGGGTGATT+TGG + Chr7:24525083-24525102 MsG0780037372.01.T01:intron 40.0%
ATTAGACCACTTTCAACCCT+TGG - Chr7:24523954-24523973 None:intergenic 40.0%
CACATTAATAACCAGACGAG+AGG + Chr7:24525862-24525881 MsG0780037372.01.T01:intron 40.0%
CACTTGCGTGTTAATCTCAT+GGG + Chr7:24524566-24524585 MsG0780037372.01.T01:CDS 40.0%
CATGGTGAGTACAGAGTTTA+TGG + Chr7:24524859-24524878 MsG0780037372.01.T01:intron 40.0%
CCCTTCGTGATGAAAATTTC+TGG + Chr7:24525931-24525950 MsG0780037372.01.T01:intron 40.0%
CTTCAGATGCCTTATGTACT+CGG - Chr7:24527247-24527266 None:intergenic 40.0%
GAAGTTATATTCGTGCACAC+GGG + Chr7:24527628-24527647 MsG0780037372.01.T01:three_prime_UTR 40.0%
GAAGTTGTAGATTGTTCCCA+CGG + Chr7:24527138-24527157 MsG0780037372.01.T01:CDS 40.0%
TAGAAAGGAAACTGGACCAA+GGG - Chr7:24526737-24526756 None:intergenic 40.0%
TCACTTGCGTGTTAATCTCA+TGG + Chr7:24524565-24524584 MsG0780037372.01.T01:CDS 40.0%
TGCATTGAGCTCAACTTCAA+AGG + Chr7:24525998-24526017 MsG0780037372.01.T01:intron 40.0%
TGGAAATGGAAAGGGAAAGA+AGG - Chr7:24524082-24524101 None:intergenic 40.0%
TTCAGATGCCTTATGTACTC+GGG - Chr7:24527246-24527265 None:intergenic 40.0%
TTCCAACAGATTGTCCGTAA+AGG - Chr7:24526290-24526309 None:intergenic 40.0%
TTGCACAGTCCAATACTTTC+TGG + Chr7:24526363-24526382 MsG0780037372.01.T01:CDS 40.0%
TTGGACAGACGACAAAATTG+TGG - Chr7:24525828-24525847 None:intergenic 40.0%
TTTGCTTAGAGTGCGAAATG+AGG + Chr7:24525066-24525085 MsG0780037372.01.T01:intron 40.0%
! ACCCTTAAGCCAGAAAGTAT+TGG - Chr7:24526375-24526394 None:intergenic 40.0%
! ATCCAGTAAAGCGTTCATAC+TGG + Chr7:24526400-24526419 MsG0780037372.01.T01:CDS 40.0%
! GAAGGTGATAGTGAAAGAAG+AGG - Chr7:24524064-24524083 None:intergenic 40.0%
!! AGTTTGTATGATGGTGGGTT+TGG - Chr7:24524338-24524357 None:intergenic 40.0%
!! GAAGAGGCTCTTTGTTTCTA+TGG - Chr7:24524048-24524067 None:intergenic 40.0%
!! GGCTCTTTGTTTCTATGGAA+TGG - Chr7:24524043-24524062 None:intergenic 40.0%
!! GGGAGCATCTCATTAGATTA+AGG - Chr7:24526486-24526505 None:intergenic 40.0%
!! GTCCAATACTTTCTGGCTTA+AGG + Chr7:24526370-24526389 MsG0780037372.01.T01:CDS 40.0%
!! TGAGTGAAGGAGTGCTTTAT+TGG - Chr7:24523981-24524000 None:intergenic 40.0%
!!! GACGAGTTTTTTACCTTCTC+TGG - Chr7:24527426-24527445 None:intergenic 40.0%
!!! TGTTGTTGTGCTTTTGGGTT+TGG + Chr7:24524638-24524657 MsG0780037372.01.T01:intron 40.0%
AAACAGGTGCAGGACTGTTT+GGG - Chr7:24525529-24525548 None:intergenic 45.0%
ACAATAGCATGCGAGATCCA+AGG + Chr7:24523934-24523953 MsG0780037372.01.T01:CDS 45.0%
AGCTCTTTCCCGAGTACATA+AGG + Chr7:24527235-24527254 MsG0780037372.01.T01:CDS 45.0%
CAAAACGAGTGAGACTGCTT+GGG - Chr7:24524914-24524933 None:intergenic 45.0%
CAATAGCATGCGAGATCCAA+GGG + Chr7:24523935-24523954 MsG0780037372.01.T01:CDS 45.0%
CAGTCCTTATTCTGTCGAGT+CGG - Chr7:24527590-24527609 None:intergenic 45.0%
CGCAAAGATACAGTTTCCGA+AGG + Chr7:24527298-24527317 MsG0780037372.01.T01:CDS 45.0%
CGGAAACTGTATCTTTGCGA+CGG - Chr7:24527297-24527316 None:intergenic 45.0%
CTAGCTGCAAGATCCAAAGT+CGG - Chr7:24526318-24526337 None:intergenic 45.0%
CTGATCGTAGAGAAAAGCCA+AGG + Chr7:24527385-24527404 MsG0780037372.01.T01:CDS 45.0%
GAGTGCGAAATGAGGATTTG+TGG + Chr7:24525074-24525093 MsG0780037372.01.T01:intron 45.0%
GTTCTTGTAAGCTATCGTGG+AGG + Chr7:24525235-24525254 MsG0780037372.01.T01:intron 45.0%
TACGGACAATCTGTTGGAAG+TGG + Chr7:24526291-24526310 MsG0780037372.01.T01:CDS 45.0%
TAGCTGCAAGATCCAAAGTC+GGG - Chr7:24526317-24526336 None:intergenic 45.0%
TATATTCGTGCACACGGGAT+TGG + Chr7:24527633-24527652 MsG0780037372.01.T01:three_prime_UTR 45.0%
! ACGTTTTCACGGTGAGGAAA+TGG - Chr7:24524398-24524417 None:intergenic 45.0%
! ATCTCAACGTTTTCACGGTG+AGG - Chr7:24524404-24524423 None:intergenic 45.0%
! CAAACTGGTCTGTACTCCTT+CGG - Chr7:24527317-24527336 None:intergenic 45.0%
! TGTGGAGACTGAAGAGCTTT+TGG + Chr7:24525450-24525469 MsG0780037372.01.T01:intron 45.0%
!! GAAAGAGCTCTAAATCGCAG+TGG - Chr7:24527224-24527243 None:intergenic 45.0%
!! TTGACCGACTCGACAGAATA+AGG + Chr7:24527583-24527602 MsG0780037372.01.T01:CDS 45.0%
!! TTGTATGATGGTGGGTTTGG+TGG - Chr7:24524335-24524354 None:intergenic 45.0%
!!! TTTTTGTTATTTTTTTATAT+TGG + Chr7:24527658-24527677 MsG0780037372.01.T01:three_prime_UTR 5.0%
AGCAAGTTACTCCTCTCGTC+TGG - Chr7:24525876-24525895 None:intergenic 50.0%
ATGAAACTTTCGACGCGTCG+AGG + Chr7:24524425-24524444 MsG0780037372.01.T01:CDS 50.0%
CAAACAGGTGCAGGACTGTT+TGG - Chr7:24525530-24525549 None:intergenic 50.0%
CCAAAACGAGTGAGACTGCT+TGG - Chr7:24524915-24524934 None:intergenic 50.0%
CGACTCGACAGAATAAGGAC+TGG + Chr7:24527588-24527607 MsG0780037372.01.T01:CDS 50.0%
CGACTTTGGATCTTGCAGCT+AGG + Chr7:24526316-24526335 MsG0780037372.01.T01:CDS 50.0%
CGAGATCCAAGGGTTGAAAG+TGG + Chr7:24523945-24523964 MsG0780037372.01.T01:CDS 50.0%
GAGCACAGACAAACCAGAGA+AGG + Chr7:24527410-24527429 MsG0780037372.01.T01:CDS 50.0%
GGGTGGGGTAACATCATCAA+TGG + Chr7:24524289-24524308 MsG0780037372.01.T01:CDS 50.0%
GGTTTGTCTGTGCTCTTCCT+TGG - Chr7:24527405-24527424 None:intergenic 50.0%
TACGAACCACTGTGGCTCAA+AGG + Chr7:24527192-24527211 MsG0780037372.01.T01:CDS 50.0%
TCTTTCGAGGCTGCTCAAAC+TGG - Chr7:24527332-24527351 None:intergenic 50.0%
TTACCTCCTTTGAGCCACAG+TGG - Chr7:24527201-24527220 None:intergenic 50.0%
TTCCCACGGTAAGCAACTCT+GGG + Chr7:24527152-24527171 MsG0780037372.01.T01:CDS 50.0%
TTCCCAGAGTTGCTTACCGT+GGG - Chr7:24527157-24527176 None:intergenic 50.0%
! CCAAGCAGTCTCACTCGTTT+TGG + Chr7:24524912-24524931 MsG0780037372.01.T01:intron 50.0%
!! GCAGTCTCACTCGTTTTGGT+CGG + Chr7:24524916-24524935 MsG0780037372.01.T01:intron 50.0%
ACTTTCGACGCGTCGAGGAA+CGG + Chr7:24524430-24524449 MsG0780037372.01.T01:CDS 55.0%
CATGGCAACGCTGCTGATCT+GGG + Chr7:24524509-24524528 MsG0780037372.01.T01:CDS 55.0%
GAACCACTGTGGCTCAAAGG+AGG + Chr7:24527195-24527214 MsG0780037372.01.T01:CDS 55.0%
GAGAGTGAGGGAGTGAGTGA+AGG - Chr7:24523994-24524013 None:intergenic 55.0%
GTACGGACAGTCGTCAGGAA+AGG + Chr7:24526083-24526102 MsG0780037372.01.T01:CDS 55.0%
GTTCCCACGGTAAGCAACTC+TGG + Chr7:24527151-24527170 MsG0780037372.01.T01:CDS 55.0%
GTTCCCAGAGTTGCTTACCG+TGG - Chr7:24527158-24527177 None:intergenic 55.0%
TCATGGCAACGCTGCTGATC+TGG + Chr7:24524508-24524527 MsG0780037372.01.T01:CDS 55.0%
TGTTGGAAGTGGCCCGACTT+TGG + Chr7:24526302-24526321 MsG0780037372.01.T01:CDS 55.0%
TCTGGGTACGGACAGTCGTC+AGG + Chr7:24526078-24526097 MsG0780037372.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 24523872 24527924 24523872 ID=MsG0780037372.01;Name=MsG0780037372.01
Chr7 mRNA 24523872 24527924 24523872 ID=MsG0780037372.01.T01;Parent=MsG0780037372.01;Name=MsG0780037372.01.T01;_AED=0.44;_eAED=0.44;_QI=55|1|1|1|1|1|5|310|490
Chr7 exon 24527126 24527924 24527126 ID=MsG0780037372.01.T01:exon:5234;Parent=MsG0780037372.01.T01
Chr7 exon 24526522 24526569 24526522 ID=MsG0780037372.01.T01:exon:5233;Parent=MsG0780037372.01.T01
Chr7 exon 24526201 24526437 24526201 ID=MsG0780037372.01.T01:exon:5232;Parent=MsG0780037372.01.T01
Chr7 exon 24526068 24526104 24526068 ID=MsG0780037372.01.T01:exon:5231;Parent=MsG0780037372.01.T01
Chr7 exon 24523872 24524588 24523872 ID=MsG0780037372.01.T01:exon:5230;Parent=MsG0780037372.01.T01
Chr7 five_prime_UTR 24523872 24523926 24523872 ID=MsG0780037372.01.T01:five_prime_utr;Parent=MsG0780037372.01.T01
Chr7 CDS 24523927 24524588 24523927 ID=MsG0780037372.01.T01:cds;Parent=MsG0780037372.01.T01
Chr7 CDS 24526068 24526104 24526068 ID=MsG0780037372.01.T01:cds;Parent=MsG0780037372.01.T01
Chr7 CDS 24526201 24526437 24526201 ID=MsG0780037372.01.T01:cds;Parent=MsG0780037372.01.T01
Chr7 CDS 24526522 24526569 24526522 ID=MsG0780037372.01.T01:cds;Parent=MsG0780037372.01.T01
Chr7 CDS 24527126 24527614 24527126 ID=MsG0780037372.01.T01:cds;Parent=MsG0780037372.01.T01
Chr7 three_prime_UTR 24527615 24527924 24527615 ID=MsG0780037372.01.T01:three_prime_utr;Parent=MsG0780037372.01.T01
Gene Sequence

>MsG0780037372.01.T01

ATGAAAGACAATAGCATGCGAGATCCAAGGGTTGAAAGTGGTCTAATCAAACCAATAAAGCACTCCTTCACTCACTCCCTCACTCTCAAAGCAATAAACAACCATAACATAATCCATTCCATAGAAACAAAGAGCCTCTTCTTTCACTATCACCTTCTTTCCCTTTCCATTTCCATCATAAAAAGTAGTTTAGTTAGTTTCCTCATCTTCTTCTCTTCTTCAAAAAACACACCACAAGATCTAACTCAATTCACCATCTTCACACTTCACAAAACACACATAAACTTAAAACATAAAAACAACATAAAACATAAAAAGAAAGAAAGAAAGAAAGAAAGAAACATTGTTTATGTTTATGTGATGGGTGGGGTAACATCATCAATGGCATCAAAATTTGCATTCTTTCCACCAAACCCACCATCATACAAACTAATCAAAGATGATTTAACAGGTCTACTTCTACTAACACCATTTCCTCACCGTGAAAACGTTGAGATTATGAAACTTTCGACGCGTCGAGGAACGGAGATTGTAGCTGTTTATGTTCGTCATCCAATGGCTACTTCAACTCTTCTTTACTCTCATGGCAACGCTGCTGATCTGGGTCAGATGTATGAGCTTTTCATTGAGCTTAGTATTCACTTGCGTGTTAATCTCATGGGGTATGATTATTCTGGGTACGGACAGTCGTCAGGAAAGCCAAGTGAGCAGAATACATATTCAGATATCGAGGCTGTATACAAATGTCTCGAAGAAAGTTTTGGTGCTAAGCAAGAAGATATAATCCTTTACGGACAATCTGTTGGAAGTGGCCCGACTTTGGATCTTGCAGCTAGGTTACCTCAATTACGAGCTGTTGTTTTGCACAGTCCAATACTTTCTGGCTTAAGGGTGATGTATCCAGTAAAGCGTTCATACTGGTTTGACATATATAAGAATATCGACAAAATTCCACTAGTTAATTGTCCAGTTCTCATAGTTCATGGTACTTCAGATGAAGTTGTAGATTGTTCCCACGGTAAGCAACTCTGGGAACTTTGTAAAGAGAAATACGAACCACTGTGGCTCAAAGGAGGTAACCACTGCGATTTAGAGCTCTTTCCCGAGTACATAAGGCATCTGAAGAAGTTTATAACAACAGTTGAGAAGTCTCCGTCGCAAAGATACAGTTTCCGAAGGAGTACAGACCAGTTTGAGCAGCCTCGAAAGAGTACAGATATTTTTGAAGTGAGTAGAAAGAGCACTGATCGTAGAGAAAAGCCAAGGAAGAGCACAGACAAACCAGAGAAGGTAAAAAACTCGTCTTCTAGTAATGGTGGTGATATGTTGGAGAAATTGAGAATGACGTTTGATCATAAAGAGAGATCTCGGAGAAGTGTCGACTGTCATGAAAAGTCTCGAAAAAGCGTTGATCATCAATTAGAAAAAGGAAGGAAGAGCGTTGACCGACTCGACAGAATAAGGACTGGTTAA

Protein sequence

>MsG0780037372.01.T01

MKDNSMRDPRVESGLIKPIKHSFTHSLTLKAINNHNIIHSIETKSLFFHYHLLSLSISIIKSSLVSFLIFFSSSKNTPQDLTQFTIFTLHKTHINLKHKNNIKHKKKERKKERNIVYVYVMGGVTSSMASKFAFFPPNPPSYKLIKDDLTGLLLLTPFPHRENVEIMKLSTRRGTEIVAVYVRHPMATSTLLYSHGNAADLGQMYELFIELSIHLRVNLMGYDYSGYGQSSGKPSEQNTYSDIEAVYKCLEESFGAKQEDIILYGQSVGSGPTLDLAARLPQLRAVVLHSPILSGLRVMYPVKRSYWFDIYKNIDKIPLVNCPVLIVHGTSDEVVDCSHGKQLWELCKEKYEPLWLKGGNHCDLELFPEYIRHLKKFITTVEKSPSQRYSFRRSTDQFEQPRKSTDIFEVSRKSTDRREKPRKSTDKPEKVKNSSSSNGGDMLEKLRMTFDHKERSRRSVDCHEKSRKSVDHQLEKGRKSVDRLDRIRTG*