AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480024001.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480024001.01.T01 MTR_8g106870 94.328 335 13 4 1 329 1 335 0.0 629
MsG0480024001.01.T01 MTR_0110s0010 64.744 312 97 5 1 305 3 308 2.68e-133 383
MsG0480024001.01.T01 MTR_2g047975 38.614 303 149 10 34 320 28 309 4.29e-60 195
MsG0480024001.01.T01 MTR_4g051000 38.284 303 152 8 39 329 19 298 2.08e-57 188
MsG0480024001.01.T01 MTR_2g089530 38.284 303 152 8 39 329 19 298 2.08e-57 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480024001.01.T01 AT3G18050 55.060 336 113 10 12 329 11 326 7.69e-108 318
MsG0480024001.01.T01 AT4G28100 41.328 271 129 6 33 296 26 273 1.08e-61 199

Find 92 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATGAGAGATTCTATTAA+AGG 0.187880 4:+92234885 None:intergenic
AGCAGCATGCTTGTTGGATT+TGG 0.241303 4:+92237075 None:intergenic
TGTTCATCTGAGAGACTTAA+AGG 0.251190 4:+92237127 None:intergenic
GGAAAGGCTTTGAAAGTTAG+AGG 0.261782 4:-92236890 MsG0480024001.01.T01:CDS
TAACAAAGATTGTGGACTAA+TGG 0.300105 4:-92235362 MsG0480024001.01.T01:CDS
ACAATCTTTGTTATGGATCT+TGG 0.301361 4:+92235372 None:intergenic
GTCAATGGATTTCCTGGTCT+TGG 0.301632 4:-92236695 MsG0480024001.01.T01:CDS
AGAAACATGTGAGAGTGATT+TGG 0.318675 4:-92236912 MsG0480024001.01.T01:CDS
TCATTTAAACTTAATCATAA+TGG 0.319467 4:-92236782 MsG0480024001.01.T01:CDS
CTTACATTCACACGGTTACT+TGG 0.323135 4:-92235306 MsG0480024001.01.T01:CDS
GAATGAACAAGATCAGAATA+AGG 0.327555 4:+92237272 None:intergenic
TTTATTGCTATTGTGGTATT+AGG 0.328867 4:-92236829 MsG0480024001.01.T01:CDS
TTTAGTTATTATTTGAAATT+GGG 0.332077 4:-92234993 MsG0480024001.01.T01:three_prime_UTR
GAAACATGTGAGAGTGATTT+GGG 0.335585 4:-92236911 MsG0480024001.01.T01:CDS
ATCATAATGGAAATCTTGTT+GGG 0.350569 4:-92236769 MsG0480024001.01.T01:CDS
AATCATGTCAATGGATTTCC+TGG 0.353522 4:-92236701 MsG0480024001.01.T01:CDS
CACTTAACTCAAAACTCAAA+TGG 0.364950 4:-92235098 MsG0480024001.01.T01:exon
TATTAGTCTATCGCAGAATC+TGG 0.368092 4:-92234915 MsG0480024001.01.T01:three_prime_UTR
TTAGTCCACAATCTTTGTTA+TGG 0.370896 4:+92235365 None:intergenic
GCTTACTCTGCCACTGCTCT+TGG 0.375981 4:-92236992 MsG0480024001.01.T01:CDS
AACAAAGATTGTGGACTAAT+GGG 0.379439 4:-92235361 MsG0480024001.01.T01:CDS
CTTGCAACATCAGCTTGTTC+AGG 0.386076 4:+92237154 None:intergenic
AATCATAATGGAAATCTTGT+TGG 0.388039 4:-92236770 MsG0480024001.01.T01:CDS
GGGATTGTTCCTTGTGAAGA+TGG 0.393542 4:+92237184 None:intergenic
ACTGTTGCTGCATCAGGTAT+AGG 0.404077 4:+92237226 None:intergenic
GTTCCTTGTGAAGATGGATT+TGG 0.404459 4:+92237190 None:intergenic
CTGTTGCTGCATCAGGTATA+GGG 0.413282 4:+92237227 None:intergenic
AAATATACAAATGCCAAGAT+AGG 0.414288 4:+92235057 None:intergenic
AAGTAAAGATTGGTGCTTTG+AGG 0.419197 4:+92235161 None:intergenic
CATGGCTTCTTGCTAAGAAT+AGG 0.421289 4:-92235333 MsG0480024001.01.T01:CDS
GTATATTTGAATATTAGCTT+TGG 0.421378 4:-92235042 MsG0480024001.01.T01:three_prime_UTR
ATCATCAGCAGCATGCTTGT+TGG 0.425684 4:+92237069 None:intergenic
GTGCTTGCATAGCCTCTATT+CGG 0.425995 4:-92236660 MsG0480024001.01.T01:intron
AAAAGATTGATCTCCTATCT+TGG 0.436673 4:-92235070 MsG0480024001.01.T01:three_prime_UTR
AGTAGCAGCAATCATGTCAA+TGG 0.437121 4:-92236710 MsG0480024001.01.T01:CDS
TACTCTGCCACTGCTCTTGG+TGG 0.440680 4:-92236989 MsG0480024001.01.T01:CDS
GGTTGAACTGTTGCTGCATC+AGG 0.446546 4:+92237220 None:intergenic
ACTTAACTCAAAACTCAAAT+GGG 0.453388 4:-92235097 MsG0480024001.01.T01:exon
AGCTTTGGTGCCTAGCTACT+AGG 0.463643 4:-92235027 MsG0480024001.01.T01:three_prime_UTR
CTCTCAGATGAACACTTCAA+TGG 0.470119 4:-92237118 MsG0480024001.01.T01:CDS
TGGTAACAAAGGCATGTCAT+AGG 0.475683 4:+92236943 None:intergenic
AATGAACAAGATCAGAATAA+GGG 0.476316 4:+92237273 None:intergenic
AATAACAAAGAAGTAAAGAT+TGG 0.476661 4:+92235151 None:intergenic
GATTGTGGGTCAGATCCATC+AGG 0.479917 4:+92235259 None:intergenic
TCACATGTTTCTGAATCATC+TGG 0.486932 4:+92236923 None:intergenic
ACTTCAAATTCAAGCAAACT+AGG 0.488204 4:-92235406 MsG0480024001.01.T01:CDS
TATAACCACGCAGCTAGAGC+AGG 0.490667 4:+92237019 None:intergenic
GTGAGTTCTGTCCCAACACA+GGG 0.494226 4:-92237416 None:intergenic
AATGGATTTCCTGGTCTTGG+AGG 0.496142 4:-92236692 MsG0480024001.01.T01:CDS
ACCACATCACAAGTCTCATT+AGG 0.501623 4:+92236851 None:intergenic
TCAGCTTGTTCAGGAAAGGC+AGG 0.508237 4:+92237163 None:intergenic
GATGTGGTTTATTGCTATTG+TGG 0.516968 4:-92236836 MsG0480024001.01.T01:CDS
TATTAAGAGTGCATGATTGT+GGG 0.526493 4:+92235245 None:intergenic
ACATAAAACTAACCGAATAG+AGG 0.527430 4:+92236648 None:intergenic
GTTCATCTGAGAGACTTAAA+GGG 0.530502 4:+92237128 None:intergenic
GCTTTGATGTTGAGCCCTGA+TGG 0.531610 4:-92235274 MsG0480024001.01.T01:CDS
TGTGAGTTCTGTCCCAACAC+AGG 0.534823 4:-92237417 None:intergenic
TTACATTCACACGGTTACTT+GGG 0.542923 4:-92235305 MsG0480024001.01.T01:CDS
CAGGGCAACATCTGCTACGG+TGG 0.543905 4:+92237038 None:intergenic
TCATGCACTCTTAATAGTGA+TGG 0.547682 4:-92235238 MsG0480024001.01.T01:CDS
CTATTAAGAGTGCATGATTG+TGG 0.554864 4:+92235244 None:intergenic
AACATCAGCTTGTTCAGGAA+AGG 0.557995 4:+92237159 None:intergenic
GAAAGGCTTTGAAAGTTAGA+GGG 0.558239 4:-92236889 MsG0480024001.01.T01:CDS
AAGATCCATAACAAAGATTG+TGG 0.561040 4:-92235370 MsG0480024001.01.T01:CDS
AAATTACACTCCTAGTAGCT+AGG 0.563739 4:+92235017 None:intergenic
TCAGAAGAATCAACAGCAAG+AGG 0.565150 4:+92235211 None:intergenic
GCTCTTGGTGGATTTGAACA+TGG 0.566075 4:-92236977 MsG0480024001.01.T01:CDS
GATAATAGAATGAAATGCAT+AGG 0.568060 4:+92235121 None:intergenic
GGATGAAAGTGTGAAGCGAT+TGG 0.569007 4:-92236747 MsG0480024001.01.T01:CDS
GAAGATGGATTTGGTGTGAG+TGG 0.572672 4:+92237199 None:intergenic
ATGTGAGAGTGATTTGGGAA+AGG 0.572811 4:-92236906 MsG0480024001.01.T01:CDS
GAGTGAAGTGAATGTGAATG+TGG 0.582346 4:+92237349 None:intergenic
GCTGCATCAGGTATAGGGAT+AGG 0.583191 4:+92237232 None:intergenic
ATAGGTAGAGACAGATAGCA+AGG 0.586691 4:+92237250 None:intergenic
TCTGAATCATCTGGTAACAA+AGG 0.590518 4:+92236932 None:intergenic
GAGCAGGGCAACATCTGCTA+CGG 0.598551 4:+92237035 None:intergenic
TTAGAGCAACCTCCAAGACC+AGG 0.599435 4:+92236683 None:intergenic
CAGCTTGTTCAGGAAAGGCA+GGG 0.600385 4:+92237164 None:intergenic
AATGATTCAGAACAGCTCAA+AGG 0.601998 4:+92236800 None:intergenic
AGAATAAGGGCATTGAAACA+TGG 0.611713 4:+92237286 None:intergenic
TTCAAATCCACCAAGAGCAG+TGG 0.614427 4:+92236982 None:intergenic
AAGAAGAAGAGATATGGGTG+TGG 0.621729 4:+92237388 None:intergenic
TCATAATGGAAATCTTGTTG+GGG 0.624389 4:-92236768 MsG0480024001.01.T01:CDS
ACCTAATGAGACTTGTGATG+TGG 0.641764 4:-92236852 MsG0480024001.01.T01:CDS
ATAACCACGCAGCTAGAGCA+GGG 0.647079 4:+92237020 None:intergenic
GTGGACTAATGGGATTAACA+TGG 0.649737 4:-92235351 MsG0480024001.01.T01:CDS
ATTGTGGGTCAGATCCATCA+GGG 0.665448 4:+92235260 None:intergenic
TAGGACAGCTTACATTCACA+CGG 0.684791 4:-92235314 MsG0480024001.01.T01:CDS
TGAGTTCTGTCCCAACACAG+GGG 0.687506 4:-92237415 None:intergenic
GAGTTCTGTCCCAACACAGG+GGG 0.688474 4:-92237414 None:intergenic
ACACCAAATCCATCTTCACA+AGG 0.698474 4:-92237193 MsG0480024001.01.T01:CDS
GTTGCCCTGCTCTAGCTGCG+TGG 0.703286 4:-92237024 MsG0480024001.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGAGAAAAAAATTTA+GGG + Chr4:92235986-92236005 None:intergenic 10.0%
!!! TTTAGTTATTATTTGAAATT+GGG - Chr4:92237297-92237316 MsG0480024001.01.T01:CDS 10.0%
!!! TTTTAGTTATTATTTGAAAT+TGG - Chr4:92237296-92237315 MsG0480024001.01.T01:CDS 10.0%
!! AAATAGAGAAAAAAATTTAG+GGG + Chr4:92235985-92236004 None:intergenic 15.0%
!! CAAAATAGAGAAAAAAATTT+AGG + Chr4:92235987-92236006 None:intergenic 15.0%
!! TCATTTAAACTTAATCATAA+TGG - Chr4:92235508-92235527 MsG0480024001.01.T01:intron 15.0%
!!! AGACATCATAATAAATTTTA+AGG - Chr4:92236122-92236141 MsG0480024001.01.T01:intron 15.0%
!! AATAAACAAGTACATAAGAA+TGG + Chr4:92235690-92235709 None:intergenic 20.0%
!! AATAACAAAGAAGTAAAGAT+TGG + Chr4:92237142-92237161 None:intergenic 20.0%
!! ATTTCAACCTACTAATTATT+TGG + Chr4:92236678-92236697 None:intergenic 20.0%
!! TATTTCACTAATACAACTAA+TGG + Chr4:92235844-92235863 None:intergenic 20.0%
!! TTTGGCATAATAAATATGTT+TGG + Chr4:92236783-92236802 None:intergenic 20.0%
!!! CATCATAATAAATTTTAAGG+TGG - Chr4:92236125-92236144 MsG0480024001.01.T01:intron 20.0%
!!! CTTGTTTATTTGAAATTTGA+TGG - Chr4:92235700-92235719 MsG0480024001.01.T01:intron 20.0%
!!! GTATATTTGAATATTAGCTT+TGG - Chr4:92237248-92237267 MsG0480024001.01.T01:CDS 20.0%
!!! TTTAAAGCCAAATAATTAGT+AGG - Chr4:92236668-92236687 MsG0480024001.01.T01:CDS 20.0%
!!! TTTGACTATTTTTCAATGAA+TGG - Chr4:92236749-92236768 MsG0480024001.01.T01:CDS 20.0%
! AAATATACAAATGCCAAGAT+AGG + Chr4:92237236-92237255 None:intergenic 25.0%
! AAATGAATGTCTTCAAATCA+AGG - Chr4:92235874-92235893 MsG0480024001.01.T01:intron 25.0%
! AATGAACAAGATCAGAATAA+GGG + Chr4:92235020-92235039 None:intergenic 25.0%
! AATTAAACTTACATCATGCT+TGG - Chr4:92235748-92235767 MsG0480024001.01.T01:intron 25.0%
! ACTTAACTCAAAACTCAAAT+GGG - Chr4:92237193-92237212 MsG0480024001.01.T01:CDS 25.0%
! AGAACACTTACAATAAAAGA+AGG + Chr4:92236717-92236736 None:intergenic 25.0%
! ATGTTGTCTTAGAAAATAGA+TGG + Chr4:92236646-92236665 None:intergenic 25.0%
! ATTTGCATCACAAAATTAGA+TGG - Chr4:92236024-92236043 MsG0480024001.01.T01:intron 25.0%
! GAAAAAAGAAGAAGAGATAT+GGG + Chr4:92234910-92234929 None:intergenic 25.0%
! GATAATAGAATGAAATGCAT+AGG + Chr4:92237172-92237191 None:intergenic 25.0%
! GATTTAATAGCAGAACATTA+TGG + Chr4:92236607-92236626 None:intergenic 25.0%
! TGAAAAAAGAAGAAGAGATA+TGG + Chr4:92234911-92234930 None:intergenic 25.0%
! TGTTGTCTTAGAAAATAGAT+GGG + Chr4:92236645-92236664 None:intergenic 25.0%
! TTTATTGTAAGTGTTCTTGA+TGG - Chr4:92236720-92236739 MsG0480024001.01.T01:CDS 25.0%
!! AATCATAATGGAAATCTTGT+TGG - Chr4:92235520-92235539 MsG0480024001.01.T01:intron 25.0%
!! ATCATAATGGAAATCTTGTT+GGG - Chr4:92235521-92235540 MsG0480024001.01.T01:intron 25.0%
!! CTTTTAACCTTTCTTTACTT+TGG - Chr4:92235787-92235806 MsG0480024001.01.T01:intron 25.0%
!! TACAATAAAAGAAGGCATAT+AGG + Chr4:92236709-92236728 None:intergenic 25.0%
!! TGAAGACATTCATTTTACTA+TGG + Chr4:92235869-92235888 None:intergenic 25.0%
!! TTTATTGCTATTGTGGTATT+AGG - Chr4:92235461-92235480 MsG0480024001.01.T01:intron 25.0%
AAAAGATTGATCTCCTATCT+TGG - Chr4:92237220-92237239 MsG0480024001.01.T01:CDS 30.0%
AAGAACGATAAATCCAAATG+TGG + Chr4:92236401-92236420 None:intergenic 30.0%
AAGATCCATAACAAAGATTG+TGG - Chr4:92236920-92236939 MsG0480024001.01.T01:CDS 30.0%
AAGTAGGAAATGTGAATTAG+AGG + Chr4:92236342-92236361 None:intergenic 30.0%
ACATAAAACTAACCGAATAG+AGG + Chr4:92235645-92235664 None:intergenic 30.0%
ACTACAAGTACAAACACAAA+TGG + Chr4:92235956-92235975 None:intergenic 30.0%
ACTTCAAATTCAAGCAAACT+AGG - Chr4:92236884-92236903 MsG0480024001.01.T01:CDS 30.0%
AGTAGGAAATGTGAATTAGA+GGG + Chr4:92236341-92236360 None:intergenic 30.0%
CACTTAACTCAAAACTCAAA+TGG - Chr4:92237192-92237211 MsG0480024001.01.T01:CDS 30.0%
CTTAGAAAATAGATGGGAAT+CGG + Chr4:92236639-92236658 None:intergenic 30.0%
GAATGAACAAGATCAGAATA+AGG + Chr4:92235021-92235040 None:intergenic 30.0%
TAACCTTTCTTTACTTTGGA+GGG - Chr4:92235791-92235810 MsG0480024001.01.T01:intron 30.0%
TAGAGAAAAAAATTTAGGGG+AGG + Chr4:92235982-92236001 None:intergenic 30.0%
TTAACCTTTCTTTACTTTGG+AGG - Chr4:92235790-92235809 MsG0480024001.01.T01:intron 30.0%
TTAGAAAATAGATGGGAATC+GGG + Chr4:92236638-92236657 None:intergenic 30.0%
TTAGTCCACAATCTTTGTTA+TGG + Chr4:92236928-92236947 None:intergenic 30.0%
TTCCAATAACTGAGTTAAGT+AGG + Chr4:92236358-92236377 None:intergenic 30.0%
TTCCTACTTAACTCAGTTAT+TGG - Chr4:92236353-92236372 MsG0480024001.01.T01:intron 30.0%
! AACAAAGATTGTGGACTAAT+GGG - Chr4:92236929-92236948 MsG0480024001.01.T01:CDS 30.0%
! ACAATCTTTGTTATGGATCT+TGG + Chr4:92236921-92236940 None:intergenic 30.0%
! CATAACTTTTGTCGAAATCA+AGG + Chr4:92236202-92236221 None:intergenic 30.0%
! TAACAAAGATTGTGGACTAA+TGG - Chr4:92236928-92236947 MsG0480024001.01.T01:CDS 30.0%
! TATTAAGAGTGCATGATTGT+GGG + Chr4:92237048-92237067 None:intergenic 30.0%
! TCATAATGGAAATCTTGTTG+GGG - Chr4:92235522-92235541 MsG0480024001.01.T01:intron 30.0%
! TTACATCATGCTTGGTAATT+GGG - Chr4:92235756-92235775 MsG0480024001.01.T01:intron 30.0%
!!! CATTTGAGTTTTGAGTTAAG+TGG + Chr4:92237194-92237213 None:intergenic 30.0%
AAATTACACTCCTAGTAGCT+AGG + Chr4:92237276-92237295 None:intergenic 35.0%
AATGATTCAGAACAGCTCAA+AGG + Chr4:92235493-92235512 None:intergenic 35.0%
AGAAACATGTGAGAGTGATT+TGG - Chr4:92235378-92235397 MsG0480024001.01.T01:CDS 35.0%
ATTAGTGATTGTGGCATGTT+TGG + Chr4:92236269-92236288 None:intergenic 35.0%
CAAACCATCATTAGTGATTG+TGG + Chr4:92236278-92236297 None:intergenic 35.0%
CACAATCACTAATGATGGTT+TGG - Chr4:92236276-92236295 MsG0480024001.01.T01:intron 35.0%
CCGTAATTTCGACAAAATCA+CGG + Chr4:92236172-92236191 None:intergenic 35.0%
GAAACATGTGAGAGTGATTT+GGG - Chr4:92235379-92235398 MsG0480024001.01.T01:CDS 35.0%
GTAGGAAATGTGAATTAGAG+GGG + Chr4:92236340-92236359 None:intergenic 35.0%
GTTCATCTGAGAGACTTAAA+GGG + Chr4:92235165-92235184 None:intergenic 35.0%
TATCCCTCCAAAGTAAAGAA+AGG + Chr4:92235797-92235816 None:intergenic 35.0%
TCATGCACTCTTAATAGTGA+TGG - Chr4:92237052-92237071 MsG0480024001.01.T01:CDS 35.0%
TCTGAATCATCTGGTAACAA+AGG + Chr4:92235361-92235380 None:intergenic 35.0%
TGTTCATCTGAGAGACTTAA+AGG + Chr4:92235166-92235185 None:intergenic 35.0%
TTACATTCACACGGTTACTT+GGG - Chr4:92236985-92237004 MsG0480024001.01.T01:CDS 35.0%
! AACTTTTGTCGAAATCAAGG+TGG + Chr4:92236199-92236218 None:intergenic 35.0%
! AAGGTGGCTCTGTATATATT+TGG - Chr4:92236141-92236160 MsG0480024001.01.T01:intron 35.0%
! AAGTAAAGATTGGTGCTTTG+AGG + Chr4:92237132-92237151 None:intergenic 35.0%
! AATCATGTCAATGGATTTCC+TGG - Chr4:92235589-92235608 MsG0480024001.01.T01:intron 35.0%
! ACAGAAACAGCACTTACTTT+TGG + Chr4:92236801-92236820 None:intergenic 35.0%
! CCGTGATTTTGTCGAAATTA+CGG - Chr4:92236169-92236188 MsG0480024001.01.T01:intron 35.0%
! CTATTAAGAGTGCATGATTG+TGG + Chr4:92237049-92237068 None:intergenic 35.0%
! CTTACATCATGCTTGGTAAT+TGG - Chr4:92235755-92235774 MsG0480024001.01.T01:intron 35.0%
! GATGTGGTTTATTGCTATTG+TGG - Chr4:92235454-92235473 MsG0480024001.01.T01:intron 35.0%
! TACATCATGCTTGGTAATTG+GGG - Chr4:92235757-92235776 MsG0480024001.01.T01:intron 35.0%
! TATTAGTCTATCGCAGAATC+TGG - Chr4:92237375-92237394 MsG0480024001.01.T01:five_prime_UTR 35.0%
! TCACATGTTTCTGAATCATC+TGG + Chr4:92235370-92235389 None:intergenic 35.0%
!! AGAATAAGGGCATTGAAACA+TGG + Chr4:92235007-92235026 None:intergenic 35.0%
!! GAAAGGCTTTGAAAGTTAGA+GGG - Chr4:92235401-92235420 MsG0480024001.01.T01:CDS 35.0%
!! TTGTTTTGCACATGGGAATT+GGG + Chr4:92236062-92236081 None:intergenic 35.0%
AAGAAGAAGAGATATGGGTG+TGG + Chr4:92234905-92234924 None:intergenic 40.0%
ACAACATCTGTAGCCACATT+TGG - Chr4:92236385-92236404 MsG0480024001.01.T01:intron 40.0%
ACACCAAATCCATCTTCACA+AGG - Chr4:92235097-92235116 MsG0480024001.01.T01:exon 40.0%
ACCACATCACAAGTCTCATT+AGG + Chr4:92235442-92235461 None:intergenic 40.0%
ACCTAATGAGACTTGTGATG+TGG - Chr4:92235438-92235457 MsG0480024001.01.T01:intron 40.0%
AGTAGCAGCAATCATGTCAA+TGG - Chr4:92235580-92235599 MsG0480024001.01.T01:intron 40.0%
ATAGGTAGAGACAGATAGCA+AGG + Chr4:92235043-92235062 None:intergenic 40.0%
CATGCCACAATCACTAATGA+TGG - Chr4:92236271-92236290 MsG0480024001.01.T01:intron 40.0%
CATGGCTTCTTGCTAAGAAT+AGG - Chr4:92236957-92236976 MsG0480024001.01.T01:CDS 40.0%
CTCTCAGATGAACACTTCAA+TGG - Chr4:92235172-92235191 MsG0480024001.01.T01:CDS 40.0%
CTTACATTCACACGGTTACT+TGG - Chr4:92236984-92237003 MsG0480024001.01.T01:CDS 40.0%
GAGTGAAGTGAATGTGAATG+TGG + Chr4:92234944-92234963 None:intergenic 40.0%
TAGGACAGCTTACATTCACA+CGG - Chr4:92236976-92236995 MsG0480024001.01.T01:CDS 40.0%
TCAGAAGAATCAACAGCAAG+AGG + Chr4:92237082-92237101 None:intergenic 40.0%
! AACATCAGCTTGTTCAGGAA+AGG + Chr4:92235134-92235153 None:intergenic 40.0%
! ACATCATGCTTGGTAATTGG+GGG - Chr4:92235758-92235777 MsG0480024001.01.T01:intron 40.0%
! ATGTGAGAGTGATTTGGGAA+AGG - Chr4:92235384-92235403 MsG0480024001.01.T01:CDS 40.0%
! GTGGACTAATGGGATTAACA+TGG - Chr4:92236939-92236958 MsG0480024001.01.T01:CDS 40.0%
! GTTCCTTGTGAAGATGGATT+TGG + Chr4:92235103-92235122 None:intergenic 40.0%
! TGGTAACAAAGGCATGTCAT+AGG + Chr4:92235350-92235369 None:intergenic 40.0%
!! GGAAAGGCTTTGAAAGTTAG+AGG - Chr4:92235400-92235419 MsG0480024001.01.T01:CDS 40.0%
!!! CAACAGCTTGTTTTGCACAT+GGG + Chr4:92236069-92236088 None:intergenic 40.0%
!!! CTTGTTTTGCACATGGGAAT+TGG + Chr4:92236063-92236082 None:intergenic 40.0%
ACTGTTGCTGCATCAGGTAT+AGG + Chr4:92235067-92235086 None:intergenic 45.0%
ATCATCAGCAGCATGCTTGT+TGG + Chr4:92235224-92235243 None:intergenic 45.0%
ATTGTGGGTCAGATCCATCA+GGG + Chr4:92237033-92237052 None:intergenic 45.0%
CTGTTGCTGCATCAGGTATA+GGG + Chr4:92235066-92235085 None:intergenic 45.0%
GAACCACGGTGAATTTGACA+CGG + Chr4:92236247-92236266 None:intergenic 45.0%
GGGATTGTTCCTTGTGAAGA+TGG + Chr4:92235109-92235128 None:intergenic 45.0%
GTGCTTGCATAGCCTCTATT+CGG - Chr4:92235630-92235649 MsG0480024001.01.T01:intron 45.0%
TTCAAATCCACCAAGAGCAG+TGG + Chr4:92235311-92235330 None:intergenic 45.0%
! AGCAGCATGCTTGTTGGATT+TGG + Chr4:92235218-92235237 None:intergenic 45.0%
! CTTGCAACATCAGCTTGTTC+AGG + Chr4:92235139-92235158 None:intergenic 45.0%
! GGATGAAAGTGTGAAGCGAT+TGG - Chr4:92235543-92235562 MsG0480024001.01.T01:intron 45.0%
! GTCAATGGATTTCCTGGTCT+TGG - Chr4:92235595-92235614 MsG0480024001.01.T01:intron 45.0%
! TTGTGGCATGTTTGGAACCA+CGG + Chr4:92236261-92236280 None:intergenic 45.0%
!! AATGGATTTCCTGGTCTTGG+AGG - Chr4:92235598-92235617 MsG0480024001.01.T01:intron 45.0%
!! GAAGATGGATTTGGTGTGAG+TGG + Chr4:92235094-92235113 None:intergenic 45.0%
!! GCTCTTGGTGGATTTGAACA+TGG - Chr4:92235313-92235332 MsG0480024001.01.T01:CDS 45.0%
!!! GCAACAGCTTGTTTTGCACA+TGG + Chr4:92236070-92236089 None:intergenic 45.0%
!! TAAAATTATTATTAAAATGT+TGG - Chr4:92236496-92236515 MsG0480024001.01.T01:intron 5.0%
ATAACCACGCAGCTAGAGCA+GGG + Chr4:92235273-92235292 None:intergenic 50.0%
GATTGTGGGTCAGATCCATC+AGG + Chr4:92237034-92237053 None:intergenic 50.0%
GCTGCATCAGGTATAGGGAT+AGG + Chr4:92235061-92235080 None:intergenic 50.0%
GCTTTGATGTTGAGCCCTGA+TGG - Chr4:92237016-92237035 MsG0480024001.01.T01:CDS 50.0%
GGTTGAACTGTTGCTGCATC+AGG + Chr4:92235073-92235092 None:intergenic 50.0%
TATAACCACGCAGCTAGAGC+AGG + Chr4:92235274-92235293 None:intergenic 50.0%
TCACCGTGTCAAATTCACCG+TGG - Chr4:92236241-92236260 MsG0480024001.01.T01:intron 50.0%
TTAGAGCAACCTCCAAGACC+AGG + Chr4:92235610-92235629 None:intergenic 50.0%
! CAGCTTGTTCAGGAAAGGCA+GGG + Chr4:92235129-92235148 None:intergenic 50.0%
! TCAGCTTGTTCAGGAAAGGC+AGG + Chr4:92235130-92235149 None:intergenic 50.0%
!! AGCTTTGGTGCCTAGCTACT+AGG - Chr4:92237263-92237282 MsG0480024001.01.T01:CDS 50.0%
GAGCAGGGCAACATCTGCTA+CGG + Chr4:92235258-92235277 None:intergenic 55.0%
GCTTACTCTGCCACTGCTCT+TGG - Chr4:92235298-92235317 MsG0480024001.01.T01:CDS 55.0%
TACTCTGCCACTGCTCTTGG+TGG - Chr4:92235301-92235320 MsG0480024001.01.T01:CDS 55.0%
CAGGGCAACATCTGCTACGG+TGG + Chr4:92235255-92235274 None:intergenic 60.0%
GGTGTGGTAGCCCCCTGTGT+TGG + Chr4:92234889-92234908 None:intergenic 65.0%
GTTGCCCTGCTCTAGCTGCG+TGG - Chr4:92235266-92235285 MsG0480024001.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 92234886 92237426 92234886 ID=MsG0480024001.01;Name=MsG0480024001.01
Chr4 mRNA 92234886 92237426 92234886 ID=MsG0480024001.01.T01;Parent=MsG0480024001.01;Name=MsG0480024001.01.T01;_AED=0.28;_eAED=0.28;_QI=103|1|1|1|1|1|2|228|329
Chr4 exon 92234886 92235440 92234886 ID=MsG0480024001.01.T01:exon:34059;Parent=MsG0480024001.01.T01
Chr4 exon 92236661 92237426 92236661 ID=MsG0480024001.01.T01:exon:34058;Parent=MsG0480024001.01.T01
Chr4 five_prime_UTR 92237324 92237426 92237324 ID=MsG0480024001.01.T01:five_prime_utr;Parent=MsG0480024001.01.T01
Chr4 CDS 92236661 92237323 92236661 ID=MsG0480024001.01.T01:cds;Parent=MsG0480024001.01.T01
Chr4 CDS 92235114 92235440 92235114 ID=MsG0480024001.01.T01:cds;Parent=MsG0480024001.01.T01
Chr4 three_prime_UTR 92234886 92235113 92234886 ID=MsG0480024001.01.T01:three_prime_utr;Parent=MsG0480024001.01.T01
Gene Sequence

>MsG0480024001.01.T01

ATGACACTGACACTACCATGTTTCAATGCCCTTATTCTGATCTTGTTCATTCCTTGCTATCTGTCTCTACCTATCCCTATACCTGATGCAGCAACAGTTCAACCACTCACACCAAATCCATCTTCACAAGGAACAATCCCTGCCTTTCCTGAACAAGCTGATGTTGCAAGATGCCCTTTAAGTCTCTCAGATGAACACTTCAATGGAATCAAAAACGCATGCAGTTCCAAATCCAACAAGCATGCTGCTGATGATGATGAACTCCACCGTAGCAGATGTTGCCCTGCTCTAGCTGCGTGGTTATATTCTGCTTACTCTGCCACTGCTCTTGGTGGATTTGAACATGGACACACTACATCCTATGACATGCCTTTGTTACCAGATGATTCAGAAACATGTGAGAGTGATTTGGGAAAGGCTTTGAAAGTTAGAGGGATTGAACTTTTTCAACCTAATGAGACTTGTGATGTGGTTTATTGCTATTGTGGTATTAGGCTTCATCCTTTGAGCTGTTCTGAATCATTTAAACTTAATCATAATGGAAATCTTGTTGGGGATGAAAGTGTGAAGCGATTGGAGAGAAATTGTTTGAGTAGCAGCAATCATGTCAATGGATTTCCTGGTCTTGGAGGTTGCTCTAAGTGCTTGCATAGCCTCTATTCGCTTAGAAAGAAGACTTCAAATTCAAGCAAACTAGGAGATAGAACAACCAAGATCCATAACAAAGATTGTGGACTAATGGGATTAACATGGCTTCTTGCTAAGAATAGGACAGCTTACATTCACACGGTTACTTGGGTTCTTCGTGCTTTGATGTTGAGCCCTGATGGATCTGACCCACAATCATGCACTCTTAATAGTGATGGAATGCCTCTTGCTGTTGATTCTTCTGAAATGTATGATCAATCTTCATCAATCAACCTCAAAGCACCAATCTTTACTTCTTTGTTATTTCTACTACCTATGCATTTCATTCTATTATCCACTTAA
Protein sequence

>MsG0480024001.01.T01

MTLTLPCFNALILILFIPCYLSLPIPIPDAATVQPLTPNPSSQGTIPAFPEQADVARCPLSLSDEHFNGIKNACSSKSNKHAADDDELHRSRCCPALAAWLYSAYSATALGGFEHGHTTSYDMPLLPDDSETCESDLGKALKVRGIELFQPNETCDVVYCYCGIRLHPLSCSESFKLNHNGNLVGDESVKRLERNCLSSSNHVNGFPGLGGCSKCLHSLYSLRKKTSNSSKLGDRTTKIHNKDCGLMGLTWLLAKNRTAYIHTVTWVLRALMLSPDGSDPQSCTLNSDGMPLAVDSSEMYDQSSSINLKAPIFTSLLFLLPMHFILLST*