Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038140.01.T02 | YP_009656386.1 | 92.5 | 80 | 5 | 1 | 37 | 116 | 42 | 120 | 1.86E-42 | 146 |
| MsG0780038140.01.T03 | YP_009758370.1 | 86.275 | 51 | 7 | 0 | 1 | 51 | 79 | 129 | 3.88E-21 | 89.4 |
| MsG0780038140.01.T01 | AOG66187.1 | 96.97 | 198 | 6 | 0 | 1 | 198 | 774 | 971 | 7.04E-131 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038140.01.T01 | Q0ZIV6 | 75.862 | 203 | 41 | 4 | 3 | 198 | 1993 | 2194 | 2.73E-94 | 308 |
| MsG0780038140.01.T02 | P19948 | 75.904 | 83 | 18 | 2 | 46 | 128 | 50 | 130 | 7.55E-32 | 112 |
| MsG0780038140.01.T03 | Q9BBR0 | 94.286 | 35 | 2 | 0 | 1 | 35 | 86 | 120 | 2.57E-16 | 69.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038140.01.T01 | A0A1B3T013 | 96.970 | 198 | 6 | 0 | 1 | 198 | 774 | 971 | 2.81e-131 | 408 |
| MsG0780038140.01.T02 | A0A4P8F1L6 | 92.500 | 80 | 5 | 1 | 37 | 116 | 42 | 120 | 8.88e-43 | 146 |
| MsG0780038140.01.T03 | A0A6G8QS48 | 86.275 | 51 | 7 | 0 | 1 | 51 | 79 | 129 | 1.85e-21 | 89.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002226.01 | MsG0780038140.01 | 0.812548 | 4.010912e-51 | 2.557729e-48 |
| MsG0180002435.01 | MsG0780038140.01 | 0.813250 | 2.815064e-51 | 1.828859e-48 |
| MsG0380013920.01 | MsG0780038140.01 | 0.805462 | 1.319381e-49 | 6.984795e-47 |
| MsG0380013932.01 | MsG0780038140.01 | 0.810696 | 1.013753e-50 | 6.153216e-48 |
| MsG0380013939.01 | MsG0780038140.01 | 0.803869 | 2.837618e-49 | 1.441929e-46 |
| MsG0380013980.01 | MsG0780038140.01 | 0.813915 | 2.009817e-51 | 1.329537e-48 |
| MsG0380014030.01 | MsG0780038140.01 | 0.817343 | 3.463206e-52 | 2.515541e-49 |
| MsG0380014036.01 | MsG0780038140.01 | 0.806696 | 7.255934e-50 | 3.964377e-47 |
| MsG0380014048.01 | MsG0780038140.01 | 0.818350 | 2.052535e-52 | 1.532762e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038140.01.T02 | MTR_4g034720 | 95.652 | 69 | 3 | 0 | 46 | 114 | 50 | 118 | 4.09e-42 | 135 |
| MsG0780038140.01.T02 | MTR_7g085940 | 88.372 | 43 | 5 | 0 | 46 | 88 | 50 | 92 | 1.52e-21 | 82.8 |
| MsG0780038140.01.T02 | MTR_0055s0010 | 90.698 | 43 | 4 | 0 | 1 | 43 | 460 | 502 | 3.93e-21 | 88.2 |
| MsG0780038140.01.T02 | MTR_0052s0190 | 90.698 | 43 | 4 | 0 | 1 | 43 | 463 | 505 | 4.21e-21 | 87.8 |
| MsG0780038140.01.T02 | MTR_4g051435 | 88.372 | 43 | 5 | 0 | 1 | 43 | 1339 | 1381 | 2.43e-20 | 85.9 |
| MsG0780038140.01.T02 | MTR_3g035670 | 88.372 | 43 | 5 | 0 | 1 | 43 | 209 | 251 | 2.52e-20 | 85.1 |
| MsG0780038140.01.T02 | MTR_0689s0010 | 76.744 | 43 | 10 | 0 | 1 | 43 | 833 | 875 | 2.64e-17 | 77.0 |
| MsG0780038140.01.T03 | MTR_4g034720 | 94.286 | 35 | 2 | 0 | 1 | 35 | 84 | 118 | 7.22e-17 | 68.2 |
| MsG0780038140.01.T01 | MTR_3g035670 | 92.424 | 198 | 15 | 0 | 1 | 198 | 54 | 251 | 1.99e-134 | 385 |
| MsG0780038140.01.T01 | MTR_4g051435 | 92.424 | 198 | 15 | 0 | 1 | 198 | 1184 | 1381 | 2.05e-125 | 390 |
| MsG0780038140.01.T01 | MTR_0055s0010 | 92.222 | 180 | 14 | 0 | 19 | 198 | 323 | 502 | 6.43e-121 | 357 |
| MsG0780038140.01.T01 | MTR_0052s0190 | 92.222 | 180 | 14 | 0 | 19 | 198 | 326 | 505 | 7.03e-121 | 357 |
| MsG0780038140.01.T01 | MTR_0689s0010 | 70.244 | 205 | 53 | 4 | 1 | 198 | 672 | 875 | 8.20e-82 | 264 |
| MsG0780038140.01.T01 | MTR_4g034720 | 95.652 | 69 | 3 | 0 | 201 | 269 | 50 | 118 | 1.61e-40 | 137 |
| MsG0780038140.01.T01 | MTR_7g085940 | 88.372 | 43 | 5 | 0 | 201 | 243 | 50 | 92 | 2.47e-21 | 86.7 |
| MsG0780038140.01.T01 | MTR_8g087850 | 76.000 | 50 | 10 | 1 | 57 | 104 | 1 | 50 | 1.79e-17 | 75.1 |
| MsG0780038140.01.T01 | MTR_3g101000 | 54.545 | 66 | 19 | 2 | 1 | 66 | 32 | 86 | 9.24e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038140.01.T02 | ATCG00660 | 53.846 | 78 | 32 | 2 | 40 | 115 | 42 | 117 | 5.07e-21 | 82.0 |
| MsG0780038140.01.T02 | ATCG01280 | 76.744 | 43 | 10 | 0 | 1 | 43 | 2146 | 2188 | 7.84e-17 | 75.9 |
| MsG0780038140.01.T02 | ATCG00860 | 76.744 | 43 | 10 | 0 | 1 | 43 | 2146 | 2188 | 7.84e-17 | 75.9 |
| MsG0780038140.01.T01 | ATCG01280 | 70.647 | 201 | 51 | 4 | 5 | 198 | 1989 | 2188 | 2.02e-77 | 256 |
| MsG0780038140.01.T01 | ATCG00860 | 70.647 | 201 | 51 | 4 | 5 | 198 | 1989 | 2188 | 2.02e-77 | 256 |
| MsG0780038140.01.T01 | ATCG00660 | 53.846 | 78 | 32 | 2 | 195 | 270 | 42 | 117 | 4.22e-19 | 81.3 |
Find 69 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATTGGGAAAGGTCATTT+TGG | 0.170817 | 7:-41072725 | MsG0780038140.01.T01:CDS |
| TGAATTGGCTTATTCGAAAA+AGG | 0.218869 | 7:+41072589 | None:intergenic |
| ATGGAGTAACATTTCTTCTT+AGG | 0.232828 | 7:-41072974 | MsG0780038140.01.T01:CDS |
| AGAGAATGATTCGGAGTTCT+TGG | 0.255304 | 7:-41072664 | MsG0780038140.01.T01:CDS |
| ATGAATTCGGATTTCCCTAT+TGG | 0.265519 | 7:-41072740 | MsG0780038140.01.T01:CDS |
| ATTTATTCAATCACATAGTT+TGG | 0.269815 | 7:-41072821 | MsG0780038140.01.T01:CDS |
| TTCGAATAAGCCAATTCATT+TGG | 0.284322 | 7:-41072584 | MsG0780038140.01.T01:CDS |
| CCCATAAATATGATTCAAAA+TGG | 0.288488 | 7:-41072936 | MsG0780038140.01.T01:CDS |
| AATGATTCTGATCTAGTTCA+TGG | 0.304121 | 7:-41073059 | MsG0780038140.01.T01:CDS |
| TGAATTCGGATTTCCCTATT+GGG | 0.346409 | 7:-41072739 | MsG0780038140.01.T01:CDS |
| CCAAAATGACCTTTCCCAAT+AGG | 0.349297 | 7:+41072725 | None:intergenic |
| TCCCAAGGGCGCCATATTCT+AGG | 0.351352 | 7:+41072795 | None:intergenic |
| TTTATGGGATTCCTTGGTTC+GGG | 0.355835 | 7:+41072951 | None:intergenic |
| TAGTTTGGGCTCCTAGAATA+TGG | 0.369050 | 7:-41072806 | MsG0780038140.01.T01:CDS |
| TTTATTCAATCACATAGTTT+GGG | 0.370059 | 7:-41072820 | MsG0780038140.01.T01:CDS |
| TCGAATAAGCCAATTCATTT+GGG | 0.375476 | 7:-41072583 | MsG0780038140.01.T01:CDS |
| GAGCACCTTCTACTTCTAAT+AGG | 0.384914 | 7:+41073036 | None:intergenic |
| CTCCTAGAATATGGCGCCCT+TGG | 0.387700 | 7:-41072797 | MsG0780038140.01.T01:CDS |
| ATCGAAAGGTCCAATGAATT+CGG | 0.391198 | 7:-41072753 | MsG0780038140.01.T01:CDS |
| ATTTATGGGATTCCTTGGTT+CGG | 0.392730 | 7:+41072950 | None:intergenic |
| CTAGATCAGAATCATTATAA+AGG | 0.398205 | 7:+41073066 | None:intergenic |
| ATCATATTTATGGGATTCCT+TGG | 0.407279 | 7:+41072945 | None:intergenic |
| CCGCGGGGTCCCAAATGAAT+TGG | 0.407857 | 7:+41072574 | None:intergenic |
| AGAAGTAGAAGGTGCTCTGC+TGG | 0.419978 | 7:-41073030 | MsG0780038140.01.T01:CDS |
| CAAAATGACCTTTCCCAATA+GGG | 0.426571 | 7:+41072726 | None:intergenic |
| TCCTAGAATATGGCGCCCTT+GGG | 0.447151 | 7:-41072796 | MsG0780038140.01.T01:CDS |
| CCTTCCCGGAGTTGAGTCTC+CGG | 0.456116 | 7:+41072271 | None:intergenic |
| CCTTCCCCTTCTTCGAACCC+CGG | 0.460275 | 7:+41072867 | None:intergenic |
| CATAGAGAAATCTATGATCA+AGG | 0.469687 | 7:+41072901 | None:intergenic |
| CATGGCCTATTAGAAGTAGA+AGG | 0.479089 | 7:-41073041 | MsG0780038140.01.T01:CDS |
| ATAGGGAAATCCGAATTCAT+TGG | 0.479507 | 7:+41072743 | None:intergenic |
| CACAAATAGCTATATTGAAA+GGG | 0.484880 | 7:-41072344 | MsG0780038140.01.T01:CDS |
| AATAGATCTTTCAAAGAAGA+AGG | 0.489209 | 7:-41072612 | MsG0780038140.01.T01:CDS |
| GCACAAATAGCTATATTGAA+AGG | 0.489337 | 7:-41072345 | MsG0780038140.01.T01:CDS |
| GGAAGTCCGTTTGATAATGA+TGG | 0.490436 | 7:-41072993 | MsG0780038140.01.T01:CDS |
| CAGATACAAAAGGATCATCT+TGG | 0.493426 | 7:+41072532 | None:intergenic |
| CTTCCCGGAGTTGAGTCTCC+GGG | 0.493683 | 7:+41072272 | None:intergenic |
| TTCCCCGGAGACTCAACTCC+GGG | 0.506548 | 7:-41072275 | MsG0780038140.01.T01:CDS |
| TATGAACCGGGGTTCGAAGA+AGG | 0.513475 | 7:-41072873 | MsG0780038140.01.T01:CDS |
| GATTCGGAGTTCTTGGAGGA+TGG | 0.514704 | 7:-41072657 | MsG0780038140.01.T01:CDS |
| GGTGAAAACACAGATACAAA+AGG | 0.517955 | 7:+41072522 | None:intergenic |
| TGAATAAATCCTCCTCTAGC+GGG | 0.519418 | 7:+41072835 | None:intergenic |
| TGAACTTAAAGAGAATGATT+CGG | 0.525203 | 7:-41072673 | MsG0780038140.01.T01:CDS |
| GTTACTCCATCATTATCAAA+CGG | 0.537400 | 7:+41072987 | None:intergenic |
| TCGGATTTCCCTATTGGGAA+AGG | 0.537936 | 7:-41072734 | MsG0780038140.01.T01:CDS |
| TTGAATAAATCCTCCTCTAG+CGG | 0.541747 | 7:+41072834 | None:intergenic |
| GAATGATTCGGAGTTCTTGG+AGG | 0.544713 | 7:-41072661 | MsG0780038140.01.T01:CDS |
| GCAGATCATTTATGATGAAG+AGG | 0.548388 | 7:-41072697 | MsG0780038140.01.T01:CDS |
| ATGAACCGGGGTTCGAAGAA+GGG | 0.552449 | 7:-41072872 | MsG0780038140.01.T01:CDS |
| CTGCTGGGATCCTCACAGAC+AGG | 0.554884 | 7:-41073014 | MsG0780038140.01.T01:CDS |
| GGGTTCGAAGAAGGGGAAGG+AGG | 0.562946 | 7:-41072864 | MsG0780038140.01.T01:CDS |
| AATCCTCCTCTAGCGGGTCG+AGG | 0.564078 | 7:+41072841 | None:intergenic |
| GAAGTAGAAGGTGCTCTGCT+GGG | 0.567953 | 7:-41073029 | MsG0780038140.01.T01:CDS |
| CCGGGGTTCGAAGAAGGGGA+AGG | 0.581168 | 7:-41072867 | MsG0780038140.01.T01:CDS |
| CAGATCATTTATGATGAAGA+GGG | 0.600306 | 7:-41072696 | MsG0780038140.01.T01:CDS |
| AGGAGGCCTCGACCCGCTAG+AGG | 0.604912 | 7:-41072847 | MsG0780038140.01.T01:CDS |
| TGAACCGGGGTTCGAAGAAG+GGG | 0.607429 | 7:-41072871 | MsG0780038140.01.T01:CDS |
| TATGTGATGATTGTATCGAA+AGG | 0.608449 | 7:-41072767 | MsG0780038140.01.T01:CDS |
| ATTCCCCGGAGACTCAACTC+CGG | 0.610337 | 7:-41072276 | MsG0780038140.01.T01:CDS |
| GAGACTCAACTCCGGGAAGG+TGG | 0.612135 | 7:-41072268 | MsG0780038140.01.T01:CDS |
| TTCTTCTTAGGCCCGAACCA+AGG | 0.620003 | 7:-41072962 | MsG0780038140.01.T01:CDS |
| AGGCCTCGACCCGCTAGAGG+AGG | 0.620764 | 7:-41072844 | MsG0780038140.01.T01:CDS |
| TCATCACATAGAAATTCCCA+AGG | 0.635454 | 7:+41072780 | None:intergenic |
| CCGGAGACTCAACTCCGGGA+AGG | 0.642949 | 7:-41072271 | MsG0780038140.01.T01:CDS |
| GTTCTTGGAGGATGGAACCA+TGG | 0.662640 | 7:-41072649 | MsG0780038140.01.T01:CDS |
| CCAATTCATTTGGGACCCCG+CGG | 0.662894 | 7:-41072574 | MsG0780038140.01.T01:CDS |
| AAACGGACTTCCTGTCTGTG+AGG | 0.680047 | 7:+41073004 | None:intergenic |
| TTCCCGGAGTTGAGTCTCCG+GGG | 0.689150 | 7:+41072273 | None:intergenic |
| CATCACATAGAAATTCCCAA+GGG | 0.753990 | 7:+41072781 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATAAAAATTCCC+CGG | - | Chr7:41073065-41073084 | MsG0780038140.01.T01:CDS | 15.0% |
| !!! | AGTATACATTGTTTTTATTT+TGG | + | Chr7:41072925-41072944 | None:intergenic | 15.0% |
| !!! | GTATACATTGTTTTTATTTT+GGG | + | Chr7:41072924-41072943 | None:intergenic | 15.0% |
| !! | ATTTATTCAATCACATAGTT+TGG | - | Chr7:41072534-41072553 | MsG0780038140.01.T01:CDS | 20.0% |
| !! | TTTATTCAATCACATAGTTT+GGG | - | Chr7:41072535-41072554 | MsG0780038140.01.T01:CDS | 20.0% |
| !!! | CCATTTTGAATCATATTTAT+GGG | + | Chr7:41072422-41072441 | None:intergenic | 20.0% |
| !!! | TCCATTTTGAATCATATTTA+TGG | + | Chr7:41072423-41072442 | None:intergenic | 20.0% |
| ! | AAGTAGAGATAGGAAAAAAA+GGG | - | Chr7:41072856-41072875 | MsG0780038140.01.T01:CDS | 25.0% |
| ! | AATAGATCTTTCAAAGAAGA+AGG | - | Chr7:41072743-41072762 | MsG0780038140.01.T01:CDS | 25.0% |
| ! | CACAAATAGCTATATTGAAA+GGG | - | Chr7:41073011-41073030 | MsG0780038140.01.T01:CDS | 25.0% |
| ! | CCCATAAATATGATTCAAAA+TGG | - | Chr7:41072419-41072438 | MsG0780038140.01.T01:CDS | 25.0% |
| ! | CTAGATCAGAATCATTATAA+AGG | + | Chr7:41072292-41072311 | None:intergenic | 25.0% |
| ! | TCTCTATGAAAAATATGAAC+CGG | - | Chr7:41072469-41072488 | MsG0780038140.01.T01:CDS | 25.0% |
| ! | TGAACTTAAAGAGAATGATT+CGG | - | Chr7:41072682-41072701 | MsG0780038140.01.T01:CDS | 25.0% |
| ATCATATTTATGGGATTCCT+TGG | + | Chr7:41072413-41072432 | None:intergenic | 30.0% | |
| ATGGAGTAACATTTCTTCTT+AGG | - | Chr7:41072381-41072400 | MsG0780038140.01.T01:CDS | 30.0% | |
| CAAGTAGAGATAGGAAAAAA+AGG | - | Chr7:41072855-41072874 | MsG0780038140.01.T01:CDS | 30.0% | |
| CAGATCATTTATGATGAAGA+GGG | - | Chr7:41072659-41072678 | MsG0780038140.01.T01:CDS | 30.0% | |
| CATAGAGAAATCTATGATCA+AGG | + | Chr7:41072457-41072476 | None:intergenic | 30.0% | |
| CTCTATGAAAAATATGAACC+GGG | - | Chr7:41072470-41072489 | MsG0780038140.01.T01:CDS | 30.0% | |
| GCACAAATAGCTATATTGAA+AGG | - | Chr7:41073010-41073029 | MsG0780038140.01.T01:CDS | 30.0% | |
| GTTACTCCATCATTATCAAA+CGG | + | Chr7:41072371-41072390 | None:intergenic | 30.0% | |
| TATGTGATGATTGTATCGAA+AGG | - | Chr7:41072588-41072607 | MsG0780038140.01.T01:CDS | 30.0% | |
| TCGAATAAGCCAATTCATTT+GGG | - | Chr7:41072772-41072791 | MsG0780038140.01.T01:CDS | 30.0% | |
| TCTATGAAAAATATGAACCG+GGG | - | Chr7:41072471-41072490 | MsG0780038140.01.T01:CDS | 30.0% | |
| TTCGAATAAGCCAATTCATT+TGG | - | Chr7:41072771-41072790 | MsG0780038140.01.T01:CDS | 30.0% | |
| ! | AATGATTCTGATCTAGTTCA+TGG | - | Chr7:41072296-41072315 | MsG0780038140.01.T01:CDS | 30.0% |
| ! | TGAAAGATCTATTTTGTGTC+TGG | + | Chr7:41072736-41072755 | None:intergenic | 30.0% |
| ! | TGAATTGGCTTATTCGAAAA+AGG | + | Chr7:41072769-41072788 | None:intergenic | 30.0% |
| !!! | CTTTTTTTCCTATCTCTACT+TGG | + | Chr7:41072857-41072876 | None:intergenic | 30.0% |
| ATAGGGAAATCCGAATTCAT+TGG | + | Chr7:41072615-41072634 | None:intergenic | 35.0% | |
| ATCGAAAGGTCCAATGAATT+CGG | - | Chr7:41072602-41072621 | MsG0780038140.01.T01:CDS | 35.0% | |
| ATGAATTCGGATTTCCCTAT+TGG | - | Chr7:41072615-41072634 | MsG0780038140.01.T01:CDS | 35.0% | |
| ATTTATGGGATTCCTTGGTT+CGG | + | Chr7:41072408-41072427 | None:intergenic | 35.0% | |
| CAAAATGACCTTTCCCAATA+GGG | + | Chr7:41072632-41072651 | None:intergenic | 35.0% | |
| CAGATACAAAAGGATCATCT+TGG | + | Chr7:41072826-41072845 | None:intergenic | 35.0% | |
| CATCACATAGAAATTCCCAA+GGG | + | Chr7:41072577-41072596 | None:intergenic | 35.0% | |
| GCAGATCATTTATGATGAAG+AGG | - | Chr7:41072658-41072677 | MsG0780038140.01.T01:CDS | 35.0% | |
| GGTGAAAACACAGATACAAA+AGG | + | Chr7:41072836-41072855 | None:intergenic | 35.0% | |
| TCATCACATAGAAATTCCCA+AGG | + | Chr7:41072578-41072597 | None:intergenic | 35.0% | |
| TCTTGGAATAGCAAAAAGAG+TGG | + | Chr7:41072809-41072828 | None:intergenic | 35.0% | |
| TGAATTCGGATTTCCCTATT+GGG | - | Chr7:41072616-41072635 | MsG0780038140.01.T01:CDS | 35.0% | |
| TTGAATAAATCCTCCTCTAG+CGG | + | Chr7:41072524-41072543 | None:intergenic | 35.0% | |
| ! | TGTTTTCACCAAGTAGAGAT+AGG | - | Chr7:41072846-41072865 | MsG0780038140.01.T01:CDS | 35.0% |
| !! | CTATTGGGAAAGGTCATTTT+GGG | - | Chr7:41072631-41072650 | MsG0780038140.01.T01:CDS | 35.0% |
| CATGGCCTATTAGAAGTAGA+AGG | - | Chr7:41072314-41072333 | MsG0780038140.01.T01:CDS | 40.0% | |
| CCAAAATGACCTTTCCCAAT+AGG | + | Chr7:41072633-41072652 | None:intergenic | 40.0% | |
| GAGCACCTTCTACTTCTAAT+AGG | + | Chr7:41072322-41072341 | None:intergenic | 40.0% | |
| TAGTTTGGGCTCCTAGAATA+TGG | - | Chr7:41072549-41072568 | MsG0780038140.01.T01:CDS | 40.0% | |
| TGAATAAATCCTCCTCTAGC+GGG | + | Chr7:41072523-41072542 | None:intergenic | 40.0% | |
| TTTATGGGATTCCTTGGTTC+GGG | + | Chr7:41072407-41072426 | None:intergenic | 40.0% | |
| ! | AAAGGGATTTTCGCAGTTTG+TGG | - | Chr7:41072873-41072892 | MsG0780038140.01.T01:CDS | 40.0% |
| ! | AGAGAATGATTCGGAGTTCT+TGG | - | Chr7:41072691-41072710 | MsG0780038140.01.T01:CDS | 40.0% |
| ! | ATTTTGTGTCTGGTACTCCA+TGG | + | Chr7:41072726-41072745 | None:intergenic | 40.0% |
| ! | CCTATTGGGAAAGGTCATTT+TGG | - | Chr7:41072630-41072649 | MsG0780038140.01.T01:CDS | 40.0% |
| !! | GGAAGTCCGTTTGATAATGA+TGG | - | Chr7:41072362-41072381 | MsG0780038140.01.T01:CDS | 40.0% |
| TAGCAAAAAGAGTGGATCCG+CGG | + | Chr7:41072801-41072820 | None:intergenic | 45.0% | |
| TCGGATTTCCCTATTGGGAA+AGG | - | Chr7:41072621-41072640 | MsG0780038140.01.T01:CDS | 45.0% | |
| ! | GAATGATTCGGAGTTCTTGG+AGG | - | Chr7:41072694-41072713 | MsG0780038140.01.T01:CDS | 45.0% |
| AGCAAAAAGAGTGGATCCGC+GGG | + | Chr7:41072800-41072819 | None:intergenic | 50.0% | |
| ATGAACCGGGGTTCGAAGAA+GGG | - | Chr7:41072483-41072502 | MsG0780038140.01.T01:CDS | 50.0% | |
| GATTCGGAGTTCTTGGAGGA+TGG | - | Chr7:41072698-41072717 | MsG0780038140.01.T01:CDS | 50.0% | |
| GTTCTTGGAGGATGGAACCA+TGG | - | Chr7:41072706-41072725 | MsG0780038140.01.T01:CDS | 50.0% | |
| TATGAACCGGGGTTCGAAGA+AGG | - | Chr7:41072482-41072501 | MsG0780038140.01.T01:CDS | 50.0% | |
| TCCTAGAATATGGCGCCCTT+GGG | - | Chr7:41072559-41072578 | MsG0780038140.01.T01:CDS | 50.0% | |
| TTCTTCTTAGGCCCGAACCA+AGG | - | Chr7:41072393-41072412 | MsG0780038140.01.T01:CDS | 50.0% | |
| ! | AAACGGACTTCCTGTCTGTG+AGG | + | Chr7:41072354-41072373 | None:intergenic | 50.0% |
| !! | AGAAGTAGAAGGTGCTCTGC+TGG | - | Chr7:41072325-41072344 | MsG0780038140.01.T01:CDS | 50.0% |
| !! | GAAGTAGAAGGTGCTCTGCT+GGG | - | Chr7:41072326-41072345 | MsG0780038140.01.T01:CDS | 50.0% |
| ATTCCCCGGAGACTCAACTC+CGG | - | Chr7:41073079-41073098 | MsG0780038140.01.T01:CDS | 55.0% | |
| CTCCTAGAATATGGCGCCCT+TGG | - | Chr7:41072558-41072577 | MsG0780038140.01.T01:CDS | 55.0% | |
| GCAAAAAGAGTGGATCCGCG+GGG | + | Chr7:41072799-41072818 | None:intergenic | 55.0% | |
| TGAACCGGGGTTCGAAGAAG+GGG | - | Chr7:41072484-41072503 | MsG0780038140.01.T01:CDS | 55.0% | |
| ! | CCAATTCATTTGGGACCCCG+CGG | - | Chr7:41072781-41072800 | MsG0780038140.01.T01:CDS | 55.0% |
| !! | TCCCAAGGGCGCCATATTCT+AGG | + | Chr7:41072563-41072582 | None:intergenic | 55.0% |
| CCGCGGGGTCCCAAATGAAT+TGG | + | Chr7:41072784-41072803 | None:intergenic | 60.0% | |
| CCTTCCCCTTCTTCGAACCC+CGG | + | Chr7:41072491-41072510 | None:intergenic | 60.0% | |
| CCTTCCCGGAGTTGAGTCTC+CGG | + | Chr7:41073087-41073106 | None:intergenic | 60.0% | |
| CTGCTGGGATCCTCACAGAC+AGG | - | Chr7:41072341-41072360 | MsG0780038140.01.T01:CDS | 60.0% | |
| CTTCCCGGAGTTGAGTCTCC+GGG | + | Chr7:41073086-41073105 | None:intergenic | 60.0% | |
| GAGACTCAACTCCGGGAAGG+TGG | - | Chr7:41073087-41073106 | MsG0780038140.01.T01:CDS | 60.0% | |
| GGGTTCGAAGAAGGGGAAGG+AGG | - | Chr7:41072491-41072510 | MsG0780038140.01.T01:CDS | 60.0% | |
| TTCCCCGGAGACTCAACTCC+GGG | - | Chr7:41073080-41073099 | MsG0780038140.01.T01:CDS | 60.0% | |
| TTCCCGGAGTTGAGTCTCCG+GGG | + | Chr7:41073085-41073104 | None:intergenic | 60.0% | |
| ! | AATCCTCCTCTAGCGGGTCG+AGG | + | Chr7:41072517-41072536 | None:intergenic | 60.0% |
| CCGGAGACTCAACTCCGGGA+AGG | - | Chr7:41073084-41073103 | MsG0780038140.01.T01:CDS | 65.0% | |
| CCGGGGTTCGAAGAAGGGGA+AGG | - | Chr7:41072488-41072507 | MsG0780038140.01.T01:CDS | 65.0% | |
| AGGAGGCCTCGACCCGCTAG+AGG | - | Chr7:41072508-41072527 | MsG0780038140.01.T01:CDS | 70.0% | |
| AGGCCTCGACCCGCTAGAGG+AGG | - | Chr7:41072511-41072530 | MsG0780038140.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 41072260 | 41073117 | 41072260 | ID=MsG0780038140.01;Name=MsG0780038140.01 |
| Chr7 | mRNA | 41072260 | 41073117 | 41072260 | ID=MsG0780038140.01.T01;Parent=MsG0780038140.01;Name=MsG0780038140.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|285 |
| Chr7 | exon | 41072260 | 41073117 | 41072260 | ID=MsG0780038140.01.T01:exon:8224;Parent=MsG0780038140.01.T01 |
| Chr7 | CDS | 41072260 | 41073117 | 41072260 | ID=MsG0780038140.01.T01:cds;Parent=MsG0780038140.01.T01 |
| Chr7 | mRNA | 41072260 | 41072652 | 41072260 | ID=MsG0780038140.01.T02;Parent=MsG0780038140.01;Name=MsG0780038140.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|130 |
| Chr7 | exon | 41072260 | 41072652 | 41072260 | ID=MsG0780038140.01.T02:exon:8225;Parent=MsG0780038140.01.T02 |
| Chr7 | CDS | 41072260 | 41072652 | 41072260 | ID=MsG0780038140.01.T02:cds;Parent=MsG0780038140.01.T02 |
| Chr7 | mRNA | 41072260 | 41072415 | 41072260 | ID=MsG0780038140.01.T03;Parent=MsG0780038140.01;Name=MsG0780038140.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|51 |
| Chr7 | exon | 41072260 | 41072415 | 41072260 | ID=MsG0780038140.01.T03:exon:8226;Parent=MsG0780038140.01.T03 |
| Chr7 | CDS | 41072260 | 41072415 | 41072260 | ID=MsG0780038140.01.T03:cds;Parent=MsG0780038140.01.T03 |
| Gene Sequence |
| Protein sequence |
