AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002435.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002435.01.T01 MTR_3g035660 89.922 129 11 1 1 127 182 310 6.83e-69 236
MsG0180002435.01.T01 MTR_3g035660 93.694 111 7 0 132 242 460 570 2.18e-62 218
MsG0180002435.01.T01 MTR_1g088510 86.290 124 16 1 120 242 20 143 1.85e-68 216
MsG0180002435.01.T01 MTR_0002s0300 80.153 131 25 1 1 130 1 131 2.61e-66 209
MsG0180002435.01.T01 MTR_0002s0310 92.308 104 8 0 133 236 34 137 1.12e-59 201
MsG0180002435.01.T01 MTR_5g063450 65.625 160 52 3 239 397 144 301 5.23e-52 180
MsG0180002435.01.T01 MTR_4g103280 88.506 87 10 0 42 128 22 108 6.89e-46 157
MsG0180002435.01.T01 MTR_1g019230 85.542 83 12 0 157 239 1 83 5.12e-42 144
MsG0180002435.01.T01 MTR_1g115250 37.327 217 83 3 298 461 209 425 5.69e-32 127
MsG0180002435.01.T01 MTR_7g094030 35.889 287 111 10 237 453 151 434 1.85e-30 123
MsG0180002435.01.T01 MTR_2g082850 42.703 185 90 6 231 410 150 323 4.86e-28 115
MsG0180002435.01.T01 MTR_2g082880 32.857 280 126 7 231 453 129 403 7.52e-28 115
MsG0180002435.01.T01 MTR_2g082800 38.247 251 103 7 237 438 153 400 2.01e-27 114
MsG0180002435.01.T01 MTR_2g072650 30.435 184 121 3 286 462 30 213 6.71e-13 68.6
MsG0180002435.01.T01 MTR_7g094050 50.000 64 32 0 390 453 40 103 2.14e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002435.01.T01 ATCG01240 92.308 130 10 0 1 130 25 154 1.64e-81 249
MsG0180002435.01.T01 ATCG00900 92.308 130 10 0 1 130 25 154 1.64e-81 249
MsG0180002435.01.T01 ATCG01250 97.087 103 3 0 133 235 34 136 8.80e-64 212
MsG0180002435.01.T01 ATCG00890 97.087 103 3 0 133 235 34 136 8.80e-64 212
MsG0180002435.01.T01 ATMG01270 31.852 135 82 3 2 130 15 145 1.69e-13 68.2
MsG0180002435.01.T01 AT2G07696 31.852 135 82 3 2 130 15 145 1.69e-13 68.2

Find 100 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTGTTGTCCTAAGTTTC+TGG 0.031237 1:-38383016 MsG0180002435.01.T01:CDS
TTTCAAATTTGACCACTTTA+AGG 0.101497 1:+38383118 None:intergenic
CATGGTTTCTCTTGGCTATA+TGG 0.197078 1:-38388124 MsG0180002435.01.T01:CDS
TGGGGCAAGCTCTTCTATTC+TGG 0.197255 1:-38388149 MsG0180002435.01.T01:CDS
GATCATCAGGTACACGATTT+TGG 0.214985 1:-38383189 MsG0180002435.01.T01:intron
CTTGCCATTCGTTGGTTATT+AGG 0.268444 1:-38389103 MsG0180002435.01.T01:CDS
ATCACAAACTTTCTATGAAC+TGG 0.269767 1:+38385272 None:intergenic
ATTAGACCGTACATCTTTCT+TGG 0.278852 1:+38388201 None:intergenic
AGCTCTTCTATTCTGGTTCA+TGG 0.287942 1:-38388142 MsG0180002435.01.T01:CDS
TTTAAATGCCAGTCCTTTAG+AGG 0.289926 1:-38385420 MsG0180002435.01.T01:intron
CATAGAAAGTTTGTGATAGA+AGG 0.292567 1:-38385266 MsG0180002435.01.T01:CDS
ATATTCATCCCTGTAGGAAT+TGG 0.296646 1:-38388010 MsG0180002435.01.T01:CDS
CATCAAGTTCCCGTTGAAAT+AGG 0.307921 1:-38389145 MsG0180002435.01.T01:CDS
TTGTGTTGTCCTAAGTTTCT+GGG 0.308735 1:-38383015 MsG0180002435.01.T01:CDS
ACATTATTTCTGCAAATATC+AGG 0.309069 1:-38385055 MsG0180002435.01.T01:CDS
AAAACGTCCGGGTCGAAATA+TGG 0.311130 1:-38389071 MsG0180002435.01.T01:CDS
GTCAAATTTGAAAGATTTGC+TGG 0.320916 1:-38383108 MsG0180002435.01.T01:CDS
TTCAAATTTGACCACTTTAA+GGG 0.323999 1:+38383119 None:intergenic
TTCTGGTTCATGGTTTCTCT+TGG 0.336946 1:-38388132 MsG0180002435.01.T01:CDS
CAAATTAAGTTCCGAATTAG+TGG 0.342047 1:-38389044 MsG0180002435.01.T01:CDS
AGTTTCTGGGTCTGAAGAAA+TGG 0.343346 1:-38383002 MsG0180002435.01.T01:CDS
CCCTAGCCCCTTCTTATCAA+TGG 0.356847 1:-38387976 MsG0180002435.01.T01:CDS
TTATGCTCCTATCTACTATC+TGG 0.367530 1:-38388229 MsG0180002435.01.T01:CDS
GCTTGACGTAAAACAAATAG+TGG 0.377192 1:+38389226 None:intergenic
TGAAGAAATGGGAAAATGTT+AGG 0.381864 1:-38382990 MsG0180002435.01.T01:CDS
TATACTTGAAGTTGTTTCAA+TGG 0.385852 1:-38385195 MsG0180002435.01.T01:CDS
TGGCGATGCCATACGCAAAA+AGG 0.399129 1:-38389005 MsG0180002435.01.T01:CDS
TTTGGCAACATCCACTAATT+CGG 0.408012 1:+38389033 None:intergenic
GAAGTTGTTTCAATGGACTA+TGG 0.408262 1:-38385188 MsG0180002435.01.T01:CDS
TATGGCATCGCCACTCCCTT+TGG 0.413652 1:+38389015 None:intergenic
TATTCATCCCTGTAGGAATT+GGG 0.416429 1:-38388009 MsG0180002435.01.T01:CDS
TCTTGGCTATATGGTTCGTC+CGG 0.418558 1:-38388115 MsG0180002435.01.T01:CDS
TTCAAAACTAATTCCTCTAA+AGG 0.418679 1:+38385407 None:intergenic
AGGCGCATCCCGAAAACGTC+CGG 0.430208 1:-38389083 MsG0180002435.01.T01:CDS
TTCTTCAGACCCAGAAACTT+AGG 0.462948 1:+38383006 None:intergenic
GTTTCTGGGTCTGAAGAAAT+GGG 0.463495 1:-38383001 MsG0180002435.01.T01:CDS
CTTGGCTATATGGTTCGTCC+GGG 0.468938 1:-38388114 MsG0180002435.01.T01:CDS
TGTGTGGATCCTATTTCAAC+GGG 0.470768 1:+38389136 None:intergenic
AGCGAAATTTAACTCATGCT+TGG 0.473461 1:+38383083 None:intergenic
TACTATGAAATATTTACTCA+TGG 0.474204 1:-38388173 MsG0180002435.01.T01:CDS
AGCTTGAACCCAATTCCTAC+AGG 0.483294 1:+38388001 None:intergenic
GGTATATCCAGATAGTAGAT+AGG 0.488329 1:+38388222 None:intergenic
ATAAGCGCAATTGAAATTCC+AGG 0.496050 1:+38388031 None:intergenic
TCCATTGATAAGAAGGGGCT+AGG 0.496352 1:+38387975 None:intergenic
TCAGGAGTCCATTGATAAGA+AGG 0.497690 1:+38387968 None:intergenic
AAGATATGAAAGACTAGTCA+AGG 0.500599 1:+38385361 None:intergenic
TGAAATATTTACTCATGGGT+GGG 0.506663 1:-38388168 MsG0180002435.01.T01:CDS
CGCACTCCTTCATATACGTC+AGG 0.510042 1:+38387950 None:intergenic
TTATCTATCGAGCTATGAAA+AGG 0.512086 1:-38389273 MsG0180002435.01.T01:CDS
TTCTTTATATTAGTTGACCA+TGG 0.514369 1:+38385236 None:intergenic
ATTGAAACAACTTCAAGTAT+AGG 0.517176 1:+38385197 None:intergenic
TTGAAGCTCTATCTCTCCCC+CGG 0.517737 1:+38388096 None:intergenic
AGAAAGTTTGTGATAGAAGG+AGG 0.519200 1:-38385263 MsG0180002435.01.T01:CDS
GCTTTGTGTGCATAGTAAGA+AGG 0.522390 1:-38384952 MsG0180002435.01.T01:intron
GAAAAGCACTTGCCATTCGT+TGG 0.526859 1:-38389111 MsG0180002435.01.T01:CDS
GTGGATGTTGCCAAAGGGAG+TGG 0.527806 1:-38389025 MsG0180002435.01.T01:CDS
ACACAAATGTATAACTCCCC+TGG 0.530663 1:-38388049 MsG0180002435.01.T01:CDS
ATGAAATATTTACTCATGGG+TGG 0.533610 1:-38388169 MsG0180002435.01.T01:CDS
GAAATATTTACTCATGGGTG+GGG 0.537789 1:-38388167 MsG0180002435.01.T01:CDS
TCTTTATATTAGTTGACCAT+GGG 0.539302 1:+38385237 None:intergenic
GAGCTTCAAGAAATAGTGAA+TGG 0.546870 1:-38388082 MsG0180002435.01.T01:CDS
AAAGGAAGAGACTCATAGAA+TGG 0.548096 1:-38388987 MsG0180002435.01.T01:CDS
CAGGAGTCCATTGATAAGAA+GGG 0.548302 1:+38387969 None:intergenic
TTGTGTGGATCCTATTTCAA+CGG 0.548545 1:+38389135 None:intergenic
GGCGCATCCCGAAAACGTCC+GGG 0.548729 1:-38389082 MsG0180002435.01.T01:CDS
GTAAAAGCAAGACGCGTAAG+CGG 0.560461 1:-38389175 MsG0180002435.01.T01:CDS
GAATTAGTGGATGTTGCCAA+AGG 0.563584 1:-38389031 MsG0180002435.01.T01:CDS
GAAAGATGTACGGTCTAATG+AGG 0.565206 1:-38388197 MsG0180002435.01.T01:CDS
TAAGCGCAATTGAAATTCCA+GGG 0.565360 1:+38388032 None:intergenic
GATGAATAATGCTCAAGCCT+TGG 0.573298 1:-38383052 MsG0180002435.01.T01:CDS
TGGCTATATGGTTCGTCCGG+GGG 0.574450 1:-38388112 MsG0180002435.01.T01:CDS
GTTAACCGTATTATGAAACA+TGG 0.576728 1:-38389319 MsG0180002435.01.T01:CDS
AATTAGTGGATGTTGCCAAA+GGG 0.582053 1:-38389030 MsG0180002435.01.T01:CDS
TCTTCAATTATCTAAAACCA+CGG 0.582125 1:-38385333 MsG0180002435.01.T01:CDS
TTGGCTATATGGTTCGTCCG+GGG 0.582473 1:-38388113 MsG0180002435.01.T01:CDS
ACTATGAAATATTTACTCAT+GGG 0.584827 1:-38388172 MsG0180002435.01.T01:CDS
TCACAAACTTTCTATGAACT+GGG 0.587785 1:+38385273 None:intergenic
TGGACTCCTGACGTATATGA+AGG 0.588163 1:-38387956 MsG0180002435.01.T01:CDS
TTCTCAGTATTAATGCAGCA+AGG 0.589487 1:-38384980 MsG0180002435.01.T01:CDS
AGAGACTCATAGAATGGCAG+AGG 0.593635 1:-38388981 MsG0180002435.01.T01:CDS
CCATTGATAAGAAGGGGCTA+GGG 0.602437 1:+38387976 None:intergenic
AGATATGAAAGACTAGTCAA+GGG 0.602777 1:+38385362 None:intergenic
TGCGCCTAATAACCAACGAA+TGG 0.620213 1:+38389099 None:intergenic
TAATGCTCAAGCCTTGGAGA+GGG 0.622100 1:-38383046 MsG0180002435.01.T01:CDS
CAAGAAAGTAACCCTCTCCA+AGG 0.622573 1:+38383035 None:intergenic
GATATACCAAGAAAGATGTA+CGG 0.625842 1:-38388207 MsG0180002435.01.T01:CDS
GCGCTTATATTCATCCCTGT+AGG 0.627139 1:-38388016 MsG0180002435.01.T01:CDS
TGATAGAAGGAGGATTCCCA+TGG 0.629468 1:-38385253 MsG0180002435.01.T01:CDS
ACTATGGTAGTACACATCAC+TGG 0.631884 1:-38385172 MsG0180002435.01.T01:CDS
AGGAGTCCATTGATAAGAAG+GGG 0.632944 1:+38387970 None:intergenic
TTGAAAGCCATATTTCGACC+CGG 0.633461 1:+38389064 None:intergenic
ATAATGCTCAAGCCTTGGAG+AGG 0.650187 1:-38383047 MsG0180002435.01.T01:CDS
CGAATCGTAACAAATAACCG+TGG 0.671969 1:+38385316 None:intergenic
TATGAAAGACTAGTCAAGGG+AGG 0.677305 1:+38385365 None:intergenic
GCTTGAACCCAATTCCTACA+GGG 0.686242 1:+38388002 None:intergenic
CTGACGTATATGAAGGAGTG+CGG 0.702764 1:-38387949 MsG0180002435.01.T01:intron
AAGCGCAATTGAAATTCCAG+GGG 0.720091 1:+38388033 None:intergenic
GTTGAAATAGGATCCACACA+AGG 0.731975 1:-38389133 MsG0180002435.01.T01:CDS
AGGGTAAAGAGAAAACAACT+CGG 0.733962 1:+38383138 None:intergenic
TTTACGTCAAGCAATACGTG+GGG 0.735447 1:-38389215 MsG0180002435.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTCAATATTAAAAAG+TGG - Chr1:38386764-38386783 MsG0180002435.01.T01:intron 10.0%
!! ATAATTAAGTTATTAATGAC+TGG - Chr1:38385617-38385636 MsG0180002435.01.T01:intron 15.0%
!! ATGTAAATATGTAATGAAAA+AGG - Chr1:38387770-38387789 MsG0180002435.01.T01:intron 15.0%
!! TCATAAAGATTGATAAAAAT+AGG - Chr1:38384792-38384811 MsG0180002435.01.T01:intron 15.0%
!! TTTGAAAAGTAAAAATTGAA+TGG - Chr1:38384869-38384888 MsG0180002435.01.T01:intron 15.0%
!!! AAAATAAAATTTTGAGATCT+AGG + Chr1:38388349-38388368 None:intergenic 15.0%
!!! ACATATTTTTAAATTTGTGT+AGG - Chr1:38388993-38389012 MsG0180002435.01.T01:CDS 15.0%
!!! ACTTGTTAAAATAACAATTA+AGG - Chr1:38384479-38384498 MsG0180002435.01.T01:intron 15.0%
!!! ATATATATATATTCCCTTTT+TGG + Chr1:38385880-38385899 None:intergenic 15.0%
!!! TATATATATATTCCCTTTTT+GGG + Chr1:38385879-38385898 None:intergenic 15.0%
!!! TTCAATTTTTACTTTTCAAA+AGG + Chr1:38384869-38384888 None:intergenic 15.0%
!! AATAAATAAAGAGGAATGTT+TGG - Chr1:38383525-38383544 MsG0180002435.01.T01:intron 20.0%
!! ACATATCATCTTCTATTTAT+AGG - Chr1:38386383-38386402 MsG0180002435.01.T01:intron 20.0%
!! ACTATGAAATATTTACTCAT+GGG - Chr1:38384119-38384138 MsG0180002435.01.T01:intron 20.0%
!! AGAATCAATAGAAAAAGAAT+CGG - Chr1:38383423-38383442 MsG0180002435.01.T01:intron 20.0%
!! AGTTGAATAGTTATTTATCA+TGG + Chr1:38387719-38387738 None:intergenic 20.0%
!! ATAAGAATTCAACTAAGAAA+TGG + Chr1:38385816-38385835 None:intergenic 20.0%
!! ATGATCAAAAAGATCTATAT+TGG - Chr1:38383736-38383755 MsG0180002435.01.T01:intron 20.0%
!! CAAATTGGATATGTAATTAT+TGG - Chr1:38385260-38385279 MsG0180002435.01.T01:CDS 20.0%
!! GTAATTATTGGAATAATTGT+TGG - Chr1:38385272-38385291 MsG0180002435.01.T01:CDS 20.0%
!! TACTATGAAATATTTACTCA+TGG - Chr1:38384118-38384137 MsG0180002435.01.T01:intron 20.0%
!! TCAACTTAATATTCCAAAAT+GGG - Chr1:38387733-38387752 MsG0180002435.01.T01:intron 20.0%
!! TTCAACTTAATATTCCAAAA+TGG - Chr1:38387732-38387751 MsG0180002435.01.T01:intron 20.0%
!! TTGCTTAAGAATAAATAAAG+AGG - Chr1:38383516-38383535 MsG0180002435.01.T01:intron 20.0%
!! TTGTTTGATGAGAAATAAAA+AGG + Chr1:38385131-38385150 None:intergenic 20.0%
!!! AAGTAAAAATTGAATGGATT+CGG - Chr1:38384875-38384894 MsG0180002435.01.T01:intron 20.0%
!!! AGGAATTAGTTTTGAAAAAT+TGG - Chr1:38386891-38386910 MsG0180002435.01.T01:intron 20.0%
!!! AGTTTTTACACTTTGTAAAT+AGG - Chr1:38386677-38386696 MsG0180002435.01.T01:intron 20.0%
!!! ATATAGATCTTTTTGATCAT+AGG + Chr1:38383736-38383755 None:intergenic 20.0%
!!! ATTCCTGATTTTAATACATT+GGG - Chr1:38388597-38388616 MsG0180002435.01.T01:intron 20.0%
!!! GTTTTTACACTTTGTAAATA+GGG - Chr1:38386678-38386697 MsG0180002435.01.T01:intron 20.0%
!!! TTATTTTTCTGTAACGAAAA+GGG + Chr1:38386647-38386666 None:intergenic 20.0%
!!! TTCATATTGATAGTAAAAGA+TGG - Chr1:38387683-38387702 MsG0180002435.01.T01:intron 20.0%
!!! TTTATTTCTCATCAAACAAA+TGG - Chr1:38385132-38385151 MsG0180002435.01.T01:CDS 20.0%
!!! TTTATTTTTCTGTAACGAAA+AGG + Chr1:38386648-38386667 None:intergenic 20.0%
!!! TTTTTCCATGTTTCATAATA+CGG + Chr1:38382980-38382999 None:intergenic 20.0%
!!! TTTTTTGATTAATGTCTACA+AGG - Chr1:38387600-38387619 MsG0180002435.01.T01:intron 20.0%
! AAAAAGAGAAAAACTATCGA+TGG + Chr1:38386728-38386747 None:intergenic 25.0%
! AAAGAATAGAACCAATAATG+TGG + Chr1:38386524-38386543 None:intergenic 25.0%
! AAATGGAAAAGCTAAAATGA+AGG + Chr1:38389033-38389052 None:intergenic 25.0%
! AAGTTTAGTAATGAGCATAA+CGG - Chr1:38383779-38383798 MsG0180002435.01.T01:intron 25.0%
! AATGAAAAAGGAGAATACTT+CGG - Chr1:38387782-38387801 MsG0180002435.01.T01:intron 25.0%
! AATTTACCTTGCTCAAATTT+AGG - Chr1:38386002-38386021 MsG0180002435.01.T01:intron 25.0%
! ACTTTCTATAAACATGGAAT+TGG - Chr1:38386407-38386426 MsG0180002435.01.T01:intron 25.0%
! AGGGTTTATTATAGAAAAAG+GGG + Chr1:38388045-38388064 None:intergenic 25.0%
! ATAGGAACTTTCTATAAACA+TGG - Chr1:38386401-38386420 MsG0180002435.01.T01:intron 25.0%
! ATGGAATTGTTTGATCTTAT+AGG + Chr1:38385689-38385708 None:intergenic 25.0%
! ATTGAAACAACTTCAAGTAT+AGG + Chr1:38387097-38387116 None:intergenic 25.0%
! CATTTAAAAAGGAAATCACA+AGG + Chr1:38386859-38386878 None:intergenic 25.0%
! CTATATTTCTTGGTTTCAAT+AGG - Chr1:38385554-38385573 MsG0180002435.01.T01:intron 25.0%
! CTATTGAAACCAAGAAATAT+AGG + Chr1:38385556-38385575 None:intergenic 25.0%
! CTTTCTATAAACATGGAATT+GGG - Chr1:38386408-38386427 MsG0180002435.01.T01:intron 25.0%
! GAAACATGGAAAAAAATCAT+TGG - Chr1:38382986-38383005 MsG0180002435.01.T01:CDS 25.0%
! GAAATACGAAATAGAAATGA+TGG - Chr1:38383471-38383490 MsG0180002435.01.T01:intron 25.0%
! GAAGAATTAGACCAAAAATT+AGG + Chr1:38383695-38383714 None:intergenic 25.0%
! GAATAAAGATTAACCTATGA+GGG + Chr1:38388064-38388083 None:intergenic 25.0%
! GAGGGTTTATTATAGAAAAA+GGG + Chr1:38388046-38388065 None:intergenic 25.0%
! GATAAAAGAAAGAAGAAGAT+TGG + Chr1:38384944-38384963 None:intergenic 25.0%
! GTACATTGAATGTACAAAAA+TGG - Chr1:38383932-38383951 MsG0180002435.01.T01:intron 25.0%
! GTCATAAAAAAGAGATCAAA+TGG + Chr1:38388381-38388400 None:intergenic 25.0%
! TAACAAGTAAAGTTATGTCT+TGG + Chr1:38384467-38384486 None:intergenic 25.0%
! TATAATCATACTCAATTCGA+TGG + Chr1:38385708-38385727 None:intergenic 25.0%
! TCCTAAGGATAATAAACATA+GGG + Chr1:38385468-38385487 None:intergenic 25.0%
! TCTTTATATTAGTTGACCAT+GGG + Chr1:38387057-38387076 None:intergenic 25.0%
! TGAATTCTTATCTTACTAAC+TGG - Chr1:38385825-38385844 MsG0180002435.01.T01:intron 25.0%
! TGAGGGTTTATTATAGAAAA+AGG + Chr1:38388047-38388066 None:intergenic 25.0%
! TTCAAAACTAATTCCTCTAA+AGG + Chr1:38386887-38386906 None:intergenic 25.0%
! TTCAAATTTGACCACTTTAA+GGG + Chr1:38389175-38389194 None:intergenic 25.0%
! TTCTTTATATTAGTTGACCA+TGG + Chr1:38387058-38387077 None:intergenic 25.0%
! TTGATTGACTATGAGAATTT+AGG - Chr1:38388407-38388426 MsG0180002435.01.T01:intron 25.0%
! TTTCAAATTTGACCACTTTA+AGG + Chr1:38389176-38389195 None:intergenic 25.0%
! TTTCTATAATAAACCCTCAT+AGG - Chr1:38388048-38388067 MsG0180002435.01.T01:CDS 25.0%
! TTTCTGACTGCAAATAATTT+AGG - Chr1:38388432-38388451 MsG0180002435.01.T01:intron 25.0%
!! GATTCTTTTCCAATTATGTA+TGG + Chr1:38383409-38383428 None:intergenic 25.0%
!! TATACTTGAAGTTGTTTCAA+TGG - Chr1:38387096-38387115 MsG0180002435.01.T01:intron 25.0%
!! TCAGAATTGATCCTAATTTT+TGG - Chr1:38383681-38383700 MsG0180002435.01.T01:intron 25.0%
!! TCTTCTTTCTTTTATCACTT+AGG - Chr1:38384948-38384967 MsG0180002435.01.T01:intron 25.0%
!! TTTATTCTTTTGTCCCATTT+TGG + Chr1:38387749-38387768 None:intergenic 25.0%
!!! ACATTATTTCTGCAAATATC+AGG - Chr1:38387236-38387255 MsG0180002435.01.T01:intron 25.0%
!!! AGGAATGTTTGGTATTTTTT+TGG - Chr1:38383536-38383555 MsG0180002435.01.T01:intron 25.0%
!!! AGTTTCCAAGTTTGTTATTA+CGG - Chr1:38384548-38384567 MsG0180002435.01.T01:intron 25.0%
!!! ATAATTTTTGACTGATCATC+AGG - Chr1:38389089-38389108 MsG0180002435.01.T01:CDS 25.0%
!!! ATACACAAAAGATCCTTTTT+TGG - Chr1:38385430-38385449 MsG0180002435.01.T01:intron 25.0%
!!! CATTCCTGATTTTAATACAT+TGG - Chr1:38388596-38388615 MsG0180002435.01.T01:intron 25.0%
!!! GGATTTTAGAAGCTAAAAAA+GGG + Chr1:38385795-38385814 None:intergenic 25.0%
!!! TCCTTTGTTTTATTCTACAT+GGG - Chr1:38387966-38387985 MsG0180002435.01.T01:CDS 25.0%
!!! TGGATTTTAGAAGCTAAAAA+AGG + Chr1:38385796-38385815 None:intergenic 25.0%
!!! TTCCTGATTTTAATACATTG+GGG - Chr1:38388598-38388617 MsG0180002435.01.T01:intron 25.0%
!!! TTCCTTTGTTTTATTCTACA+TGG - Chr1:38387965-38387984 MsG0180002435.01.T01:CDS 25.0%
!!! TTGGATTTTTCAAAACTCTA+TGG - Chr1:38384408-38384427 MsG0180002435.01.T01:intron 25.0%
!!! TTTCTCTATTTTTTAGACCT+AGG - Chr1:38384754-38384773 MsG0180002435.01.T01:intron 25.0%
AAACTTCATTTATTCTGGTG+TGG - Chr1:38385518-38385537 MsG0180002435.01.T01:intron 30.0%
ACTATCAATATGAAGAGCAA+TGG + Chr1:38387677-38387696 None:intergenic 30.0%
AGGACAAAATTGTTCATGTT+AGG + Chr1:38388533-38388552 None:intergenic 30.0%
ATAATTGTTGGAGACTCAAA+TGG - Chr1:38385284-38385303 MsG0180002435.01.T01:CDS 30.0%
ATCACAAACTTTCTATGAAC+TGG + Chr1:38387022-38387041 None:intergenic 30.0%
ATCCTGAGCAATTTCAATAA+TGG + Chr1:38385771-38385790 None:intergenic 30.0%
ATCGAAAAGAAGCAAATGAA+AGG + Chr1:38383646-38383665 None:intergenic 30.0%
ATGAAATATTTACTCATGGG+TGG - Chr1:38384122-38384141 MsG0180002435.01.T01:intron 30.0%
ATTATATTCGTAGTCTCTGA+AGG + Chr1:38384654-38384673 None:intergenic 30.0%
ATTTCCCGAAAAACTAATCA+TGG + Chr1:38383832-38383851 None:intergenic 30.0%
CAAATTAAGTTCCGAATTAG+TGG - Chr1:38383247-38383266 MsG0180002435.01.T01:intron 30.0%
CATAGAAAGTTTGTGATAGA+AGG - Chr1:38387025-38387044 MsG0180002435.01.T01:intron 30.0%
CCGAAACAACAATATGTAAA+CGG - Chr1:38386122-38386141 MsG0180002435.01.T01:intron 30.0%
CGACCATTGACAAAATTTAA+TGG - Chr1:38388323-38388342 MsG0180002435.01.T01:intron 30.0%
CTATGTTTATTATCCTTAGG+AGG - Chr1:38385467-38385486 MsG0180002435.01.T01:intron 30.0%
CTCCTAAGGATAATAAACAT+AGG + Chr1:38385469-38385488 None:intergenic 30.0%
GATATACCAAGAAAGATGTA+CGG - Chr1:38384084-38384103 MsG0180002435.01.T01:intron 30.0%
GCTAATTGAAGACAATTTGA+AGG + Chr1:38387821-38387840 None:intergenic 30.0%
GGAATAAAGATTAACCTATG+AGG + Chr1:38388065-38388084 None:intergenic 30.0%
GTCAAATTTGAAAGATTTGC+TGG - Chr1:38389183-38389202 MsG0180002435.01.T01:CDS 30.0%
GTCTTCTTACATTCATCAAA+TGG + Chr1:38387864-38387883 None:intergenic 30.0%
GTTAACCGTATTATGAAACA+TGG - Chr1:38382972-38382991 MsG0180002435.01.T01:CDS 30.0%
GTTGGTTACAAACATTGTTA+AGG + Chr1:38386164-38386183 None:intergenic 30.0%
TACATATCCAATTTGACCTA+TGG + Chr1:38385255-38385274 None:intergenic 30.0%
TACCCCAATGTATTAAAATC+AGG + Chr1:38388603-38388622 None:intergenic 30.0%
TCACAAACTTTCTATGAACT+GGG + Chr1:38387021-38387040 None:intergenic 30.0%
TCAGAGACTACGAATATAAT+AGG - Chr1:38384654-38384673 MsG0180002435.01.T01:intron 30.0%
TCCCATGTAGAATAAAACAA+AGG + Chr1:38387970-38387989 None:intergenic 30.0%
TCCTGAGCAATTTCAATAAT+GGG + Chr1:38385770-38385789 None:intergenic 30.0%
TCCTTAGTATGATACTTTGT+TGG + Chr1:38384580-38384599 None:intergenic 30.0%
TCGGAAAACTTCATTTATTC+TGG - Chr1:38385513-38385532 MsG0180002435.01.T01:intron 30.0%
TCTTACATTCATCAAATGGT+TGG + Chr1:38387860-38387879 None:intergenic 30.0%
TGAAATATTTACTCATGGGT+GGG - Chr1:38384123-38384142 MsG0180002435.01.T01:intron 30.0%
TGAAGAAATGGGAAAATGTT+AGG - Chr1:38389301-38389320 MsG0180002435.01.T01:CDS 30.0%
TGATACAGACATATCAACAT+TGG - Chr1:38388132-38388151 MsG0180002435.01.T01:CDS 30.0%
TGTACATTCAATGTACTCTA+CGG + Chr1:38383928-38383947 None:intergenic 30.0%
TGTATGGATCCATACATAAT+TGG - Chr1:38383397-38383416 MsG0180002435.01.T01:intron 30.0%
TTATCTATCGAGCTATGAAA+AGG - Chr1:38383018-38383037 MsG0180002435.01.T01:CDS 30.0%
TTATGTATGGATCCATACAT+AGG + Chr1:38383396-38383415 None:intergenic 30.0%
TTCCAGATTCCTAAAGAAAA+GGG + Chr1:38387533-38387552 None:intergenic 30.0%
TTCTATATCTCCATGAATCT+AGG - Chr1:38385338-38385357 MsG0180002435.01.T01:CDS 30.0%
TTTCCCGAAAAACTAATCAT+GGG + Chr1:38383831-38383850 None:intergenic 30.0%
TTTCGTTGAAATTGTTCGTT+TGG + Chr1:38383857-38383876 None:intergenic 30.0%
TTTGGAGACTCTAGTTATAA+AGG - Chr1:38388682-38388701 MsG0180002435.01.T01:intron 30.0%
! AAGATATGAAAGACTAGTCA+AGG + Chr1:38386933-38386952 None:intergenic 30.0%
! AATTTTGTCCTTTGTCATGA+AGG - Chr1:38388542-38388561 MsG0180002435.01.T01:intron 30.0%
! AGATATGAAAGACTAGTCAA+GGG + Chr1:38386932-38386951 None:intergenic 30.0%
! AGGCCATTAAATTTTGTCAA+TGG + Chr1:38388329-38388348 None:intergenic 30.0%
! ATTTTGCACAATCAAACACA+TGG + Chr1:38388459-38388478 None:intergenic 30.0%
! CTATTCTTAGCATGCTATTT+GGG - Chr1:38385177-38385196 MsG0180002435.01.T01:CDS 30.0%
! GTCTAGTAGTTTTTATCTCT+TGG - Chr1:38387932-38387951 MsG0180002435.01.T01:intron 30.0%
! TAAAGGACTGGCATTTAAAA+AGG + Chr1:38386870-38386889 None:intergenic 30.0%
! TCCAACAAAGTATCATACTA+AGG - Chr1:38384576-38384595 MsG0180002435.01.T01:intron 30.0%
! TTTCATTTGCTTCTTTTCGA+TGG - Chr1:38383645-38383664 MsG0180002435.01.T01:intron 30.0%
! TTTGCTTGCATTGTGTTATT+TGG - Chr1:38385365-38385384 MsG0180002435.01.T01:CDS 30.0%
! TTTTCTCTTTACCCTTAAAG+TGG - Chr1:38389161-38389180 MsG0180002435.01.T01:CDS 30.0%
!! ATATATATTCCCTTTTTGGG+TGG + Chr1:38385876-38385895 None:intergenic 30.0%
!! ATCTTTATGACTTGCTCTTA+TGG + Chr1:38384782-38384801 None:intergenic 30.0%
!! CCGTTTACATATTGTTGTTT+CGG + Chr1:38386125-38386144 None:intergenic 30.0%
!! CTATCTATTTCTGAGATGTT+TGG - Chr1:38384389-38384408 MsG0180002435.01.T01:intron 30.0%
!! GTTTCCAAGTTTGTTATTAC+GGG - Chr1:38384549-38384568 MsG0180002435.01.T01:intron 30.0%
!! TCTTGCTTTTACTGGTATAT+CGG + Chr1:38383108-38383127 None:intergenic 30.0%
!!! ACTTTTGAAATCACCATGTT+TGG - Chr1:38388664-38388683 MsG0180002435.01.T01:intron 30.0%
!!! AGAACCCATGATTAGTTTTT+CGG - Chr1:38383824-38383843 MsG0180002435.01.T01:intron 30.0%
!!! CACTCTTTTCTTTGTTGTTT+TGG - Chr1:38387377-38387396 MsG0180002435.01.T01:intron 30.0%
!!! CTATGCTGGTTCTTTTTTAT+CGG - Chr1:38387189-38387208 MsG0180002435.01.T01:intron 30.0%
!!! GATCTTTTTTCCAACAACTA+AGG + Chr1:38387643-38387662 None:intergenic 30.0%
AAAGGAAGAGACTCATAGAA+TGG - Chr1:38383304-38383323 MsG0180002435.01.T01:intron 35.0%
AAGAGCAATGGAACAAGTTT+AGG + Chr1:38387665-38387684 None:intergenic 35.0%
ACGTCTTAAAGAGAACGATT+TGG - Chr1:38386036-38386055 MsG0180002435.01.T01:intron 35.0%
ACTACCCGTAATAACAAACT+TGG + Chr1:38384556-38384575 None:intergenic 35.0%
AGAAAGTTTGTGATAGAAGG+AGG - Chr1:38387028-38387047 MsG0180002435.01.T01:intron 35.0%
AGATATGTTCCACCCAAAAA+GGG - Chr1:38385864-38385883 MsG0180002435.01.T01:intron 35.0%
AGCAAAAGTTCCTAGATTCA+TGG + Chr1:38385351-38385370 None:intergenic 35.0%
AGCATCTACATTGAGAATTC+TGG + Chr1:38384614-38384633 None:intergenic 35.0%
AGCGAAATTTAACTCATGCT+TGG + Chr1:38389211-38389230 None:intergenic 35.0%
AGGAATATCGAAAATTCGAG+TGG + Chr1:38385111-38385130 None:intergenic 35.0%
AGGGTAAAGAGAAAACAACT+CGG + Chr1:38389156-38389175 None:intergenic 35.0%
AGTGTCAATGTGCTTAGTTA+CGG - Chr1:38386316-38386335 MsG0180002435.01.T01:intron 35.0%
AGTTTCACGATAAGGCAAAA+TGG + Chr1:38389050-38389069 None:intergenic 35.0%
AGTTTCCGTATCTGTCTTTA+TGG + Chr1:38388101-38388120 None:intergenic 35.0%
ATAACTAGAGTCTCCAAACA+TGG + Chr1:38388680-38388699 None:intergenic 35.0%
ATAAGCGCAATTGAAATTCC+AGG + Chr1:38384263-38384282 None:intergenic 35.0%
ATAGAACCAATAATGTGGTC+AGG + Chr1:38386519-38386538 None:intergenic 35.0%
ATAGCATGCTAAGAATAGCT+AGG + Chr1:38385175-38385194 None:intergenic 35.0%
ATATTCATCCCTGTAGGAAT+TGG - Chr1:38384281-38384300 MsG0180002435.01.T01:intron 35.0%
ATGAATCCCGGTATGATAAA+CGG - Chr1:38384521-38384540 MsG0180002435.01.T01:intron 35.0%
ATTAGACCGTACATCTTTCT+TGG + Chr1:38384093-38384112 None:intergenic 35.0%
CAAAGAGATGGAAAAACTTG+TGG - Chr1:38386586-38386605 MsG0180002435.01.T01:intron 35.0%
CAATGTAGATGCTACATTGT+TGG - Chr1:38384621-38384640 MsG0180002435.01.T01:intron 35.0%
CATACGTTTCATGCTTGTTT+GGG + Chr1:38385219-38385238 None:intergenic 35.0%
CATCTCAGAAATAGATAGAG+AGG + Chr1:38384387-38384406 None:intergenic 35.0%
CATTGCCATAAAGACAGATA+CGG - Chr1:38388093-38388112 MsG0180002435.01.T01:CDS 35.0%
CCTAAGTATTTGCATTATGC+AGG - Chr1:38387446-38387465 MsG0180002435.01.T01:intron 35.0%
CCTGAGCAATTTCAATAATG+GGG + Chr1:38385769-38385788 None:intergenic 35.0%
CCTGCATAATGCAAATACTT+AGG + Chr1:38387449-38387468 None:intergenic 35.0%
CTTCCAGATTCCTAAAGAAA+AGG + Chr1:38387534-38387553 None:intergenic 35.0%
CTTTATGGCAATGCTTCATT+AGG + Chr1:38388086-38388105 None:intergenic 35.0%
GAAATATTTACTCATGGGTG+GGG - Chr1:38384124-38384143 MsG0180002435.01.T01:intron 35.0%
GAACCACAAAAGAGATTATC+AGG + Chr1:38386073-38386092 None:intergenic 35.0%
GAGCTTCAAGAAATAGTGAA+TGG - Chr1:38384209-38384228 MsG0180002435.01.T01:intron 35.0%
GATAACATTCGAGATTATGC+AGG - Chr1:38385404-38385423 MsG0180002435.01.T01:CDS 35.0%
GCATAACAAGTTTCACGATA+AGG + Chr1:38389058-38389077 None:intergenic 35.0%
GCCCTATGTTTATTATCCTT+AGG - Chr1:38385464-38385483 MsG0180002435.01.T01:intron 35.0%
GCTATTCTTAGCATGCTATT+TGG - Chr1:38385176-38385195 MsG0180002435.01.T01:CDS 35.0%
GCTTGACGTAAAACAAATAG+TGG + Chr1:38383068-38383087 None:intergenic 35.0%
GGTATATCCAGATAGTAGAT+AGG + Chr1:38384072-38384091 None:intergenic 35.0%
TAAGCACATAGACCTATGTA+TGG - Chr1:38383381-38383400 MsG0180002435.01.T01:intron 35.0%
TAAGCGCAATTGAAATTCCA+GGG + Chr1:38384262-38384281 None:intergenic 35.0%
TAGATATGTTCCACCCAAAA+AGG - Chr1:38385863-38385882 MsG0180002435.01.T01:intron 35.0%
TATTCATCCCTGTAGGAATT+GGG - Chr1:38384282-38384301 MsG0180002435.01.T01:intron 35.0%
TATTCGTCCATAGGTCAAAT+TGG - Chr1:38385245-38385264 MsG0180002435.01.T01:CDS 35.0%
TCAGAAATAGATAGAGAGGT+TGG + Chr1:38384383-38384402 None:intergenic 35.0%
TCCAGATTCCTAAAGAAAAG+GGG + Chr1:38387532-38387551 None:intergenic 35.0%
TGAGAACGAATCAAATCAGA+TGG - Chr1:38384726-38384745 MsG0180002435.01.T01:intron 35.0%
TGGAAAAGCTAAAATGAAGG+TGG + Chr1:38389030-38389049 None:intergenic 35.0%
TTAGAGCATGTGGTTTGAAA+TGG - Chr1:38388287-38388306 MsG0180002435.01.T01:intron 35.0%
TTAGGAATCTGGAAGGTTAA+CGG - Chr1:38387539-38387558 MsG0180002435.01.T01:intron 35.0%
TTATGCTCCTATCTACTATC+TGG - Chr1:38384062-38384081 MsG0180002435.01.T01:intron 35.0%
TTCAAGTACCTTCATGACAA+AGG + Chr1:38388553-38388572 None:intergenic 35.0%
TTCATATTAACCGCTACTCT+AGG - Chr1:38383975-38383994 MsG0180002435.01.T01:intron 35.0%
TTCATTTATTCTGGTGTGGA+TGG - Chr1:38385522-38385541 MsG0180002435.01.T01:intron 35.0%
TTCTCAGTATTAATGCAGCA+AGG - Chr1:38387311-38387330 MsG0180002435.01.T01:intron 35.0%
TTGAATGAGAGAAAGAAGTG+AGG - Chr1:38385003-38385022 MsG0180002435.01.T01:CDS 35.0%
TTGTGTGGATCCTATTTCAA+CGG + Chr1:38383159-38383178 None:intergenic 35.0%
TTGTGTTGTCCTAAGTTTCT+GGG - Chr1:38389276-38389295 MsG0180002435.01.T01:CDS 35.0%
TTTAAATGCCAGTCCTTTAG+AGG - Chr1:38386871-38386890 MsG0180002435.01.T01:intron 35.0%
TTTGGCAACATCCACTAATT+CGG + Chr1:38383261-38383280 None:intergenic 35.0%
! AACTAATTCCTCTAAAGGAC+TGG + Chr1:38386882-38386901 None:intergenic 35.0%
! AATTAGTGGATGTTGCCAAA+GGG - Chr1:38383261-38383280 MsG0180002435.01.T01:intron 35.0%
! ATTTTCGTTAATCCATGAGC+AGG - Chr1:38383351-38383370 MsG0180002435.01.T01:intron 35.0%
! CAACCTGATAATCTCTTTTG+TGG - Chr1:38386067-38386086 MsG0180002435.01.T01:intron 35.0%
! GTTTGTGATTGATGATCTTC+AGG - Chr1:38388704-38388723 MsG0180002435.01.T01:intron 35.0%
! TGCAACTGGTGATTTTTGAT+TGG - Chr1:38388638-38388657 MsG0180002435.01.T01:intron 35.0%
! TTTTACGTCAAGCAATACGT+GGG - Chr1:38383075-38383094 MsG0180002435.01.T01:CDS 35.0%
!! CTTACAAAGTTTTGCTATGC+TGG - Chr1:38387175-38387194 MsG0180002435.01.T01:intron 35.0%
!! CTTGCTTTTACTGGTATATC+GGG + Chr1:38383107-38383126 None:intergenic 35.0%
!! CTTTTCTTTAGGAATCTGGA+AGG - Chr1:38387532-38387551 MsG0180002435.01.T01:intron 35.0%
!! GAAGTTGTTTCAATGGACTA+TGG - Chr1:38387103-38387122 MsG0180002435.01.T01:intron 35.0%
!! TAGTTTGTTCTTAGAGCATG+TGG - Chr1:38388277-38388296 MsG0180002435.01.T01:intron 35.0%
!!! GAACCCATGATTAGTTTTTC+GGG - Chr1:38383825-38383844 MsG0180002435.01.T01:intron 35.0%
!!! TTGGGTTTTGTTAATGCATC+TGG - Chr1:38386426-38386445 MsG0180002435.01.T01:intron 35.0%
AAACATTCCTCCTAGAGTAG+CGG + Chr1:38383988-38384007 None:intergenic 40.0%
AACCAATAATGTGGTCAGGT+AGG + Chr1:38386515-38386534 None:intergenic 40.0%
AAGCGCAATTGAAATTCCAG+GGG + Chr1:38384261-38384280 None:intergenic 40.0%
AAGGATTCCTCGAAAAGTTC+AGG - Chr1:38384834-38384853 MsG0180002435.01.T01:intron 40.0%
AATCACCAGTTGCAAAGTCT+AGG + Chr1:38388632-38388651 None:intergenic 40.0%
AATTAAGGTGAAGCAGAGTC+AGG - Chr1:38384494-38384513 MsG0180002435.01.T01:intron 40.0%
ACAACTAAGGCCTTACTTGT+AGG + Chr1:38387630-38387649 None:intergenic 40.0%
ACAAGTAAGGCCTTAGTTGT+TGG - Chr1:38387630-38387649 MsG0180002435.01.T01:intron 40.0%
ACACAAATGTATAACTCCCC+TGG - Chr1:38384242-38384261 MsG0180002435.01.T01:intron 40.0%
ACAGAAAGAAAAGCAACGAC+TGG + Chr1:38385059-38385078 None:intergenic 40.0%
ACTATGGTAGTACACATCAC+TGG - Chr1:38387119-38387138 MsG0180002435.01.T01:intron 40.0%
ACTGAACCCGTTTATCATAC+CGG + Chr1:38384531-38384550 None:intergenic 40.0%
ACTTTACTTCACTTACGTCC+TGG - Chr1:38387485-38387504 MsG0180002435.01.T01:intron 40.0%
AGGAGTCCATTGATAAGAAG+GGG + Chr1:38384324-38384343 None:intergenic 40.0%
AGTCACGAGATGATCATCTT+AGG + Chr1:38384704-38384723 None:intergenic 40.0%
ATATTAACCGCTACTCTAGG+AGG - Chr1:38383978-38383997 MsG0180002435.01.T01:intron 40.0%
ATGCTTGCTTATTCGTCCAT+AGG - Chr1:38385236-38385255 MsG0180002435.01.T01:CDS 40.0%
ATGGCTCAACTAAGCACTTT+GGG - Chr1:38383490-38383509 MsG0180002435.01.T01:intron 40.0%
ATGGGGTTCATTGATATTCC+TGG + Chr1:38385752-38385771 None:intergenic 40.0%
ATTATGCAGGTATCTGCACT+GGG - Chr1:38387459-38387478 MsG0180002435.01.T01:intron 40.0%
ATTGTTGGAGACTCAAATGG+TGG - Chr1:38385287-38385306 MsG0180002435.01.T01:CDS 40.0%
CAGGAGTCCATTGATAAGAA+GGG + Chr1:38384325-38384344 None:intergenic 40.0%
CATCAAGTTCCCGTTGAAAT+AGG - Chr1:38383146-38383165 MsG0180002435.01.T01:CDS 40.0%
CATGGTTTCTCTTGGCTATA+TGG - Chr1:38384167-38384186 MsG0180002435.01.T01:intron 40.0%
CATTACAAGCTCTTGCAAGT+TGG + Chr1:38386182-38386201 None:intergenic 40.0%
CCCCATTATTGAAATTGCTC+AGG - Chr1:38385766-38385785 MsG0180002435.01.T01:intron 40.0%
CGAATCGTAACAAATAACCG+TGG + Chr1:38386978-38386997 None:intergenic 40.0%
CTCACGTGCGAAATTATAGA+AGG - Chr1:38385660-38385679 MsG0180002435.01.T01:intron 40.0%
CTTCTATAATTTCGCACGTG+AGG + Chr1:38385662-38385681 None:intergenic 40.0%
CTTGTGTTCTCTCAAAGAGA+TGG - Chr1:38386574-38386593 MsG0180002435.01.T01:intron 40.0%
CTTGTGTTGTCCTAAGTTTC+TGG - Chr1:38389275-38389294 MsG0180002435.01.T01:CDS 40.0%
GAAAGATGTACGGTCTAATG+AGG - Chr1:38384094-38384113 MsG0180002435.01.T01:intron 40.0%
GATGAATAATGCTCAAGCCT+TGG - Chr1:38389239-38389258 MsG0180002435.01.T01:CDS 40.0%
GCACTACCTAAATTTGAGCA+AGG + Chr1:38386011-38386030 None:intergenic 40.0%
GCATACGTTTCATGCTTGTT+TGG + Chr1:38385220-38385239 None:intergenic 40.0%
GCTAAAGAGAGAGCCAAAAA+AGG + Chr1:38385446-38385465 None:intergenic 40.0%
GCTTATATAGATCCTGCTCA+TGG + Chr1:38383366-38383385 None:intergenic 40.0%
GCTTTGTGTGCATAGTAAGA+AGG - Chr1:38387339-38387358 MsG0180002435.01.T01:intron 40.0%
GTCACGAGATGATCATCTTA+GGG + Chr1:38384703-38384722 None:intergenic 40.0%
GTGATAGCATCTACTATACC+AGG - Chr1:38385731-38385750 MsG0180002435.01.T01:intron 40.0%
GTGGTTCACTCAATTTGCAA+AGG - Chr1:38386086-38386105 MsG0180002435.01.T01:intron 40.0%
GTGTGTTCTTTACCAACTCT+TGG + Chr1:38386212-38386231 None:intergenic 40.0%
GTTGAAATAGGATCCACACA+AGG - Chr1:38383158-38383177 MsG0180002435.01.T01:CDS 40.0%
TAATGCACTCTTCCAAGAGT+TGG - Chr1:38386197-38386216 MsG0180002435.01.T01:intron 40.0%
TATCTTGTCTTGACCGTTGT+TGG + Chr1:38386487-38386506 None:intergenic 40.0%
TCAATGTACTCTACGGATAG+AGG + Chr1:38383921-38383940 None:intergenic 40.0%
TCAGGAGTCCATTGATAAGA+AGG + Chr1:38384326-38384345 None:intergenic 40.0%
TCATTCACAACCACTGATGA+AGG - Chr1:38384815-38384834 MsG0180002435.01.T01:intron 40.0%
TCCTCGAAAAGTTCAGGATT+AGG - Chr1:38384840-38384859 MsG0180002435.01.T01:intron 40.0%
TGAATCCCGGTATGATAAAC+GGG - Chr1:38384522-38384541 MsG0180002435.01.T01:intron 40.0%
TGTGTGGATCCTATTTCAAC+GGG + Chr1:38383158-38383177 None:intergenic 40.0%
TTCCTAAAGAAAAGGGGCTT+TGG + Chr1:38387526-38387545 None:intergenic 40.0%
TTCTTCAGACCCAGAAACTT+AGG + Chr1:38389288-38389307 None:intergenic 40.0%
TTGAAAGCCATATTTCGACC+CGG + Chr1:38383230-38383249 None:intergenic 40.0%
TTTACGTCAAGCAATACGTG+GGG - Chr1:38383076-38383095 MsG0180002435.01.T01:CDS 40.0%
TTTCCGAAAAAACCTGCTAG+TGG + Chr1:38385500-38385519 None:intergenic 40.0%
! ACACCTTCCTTAAGAAGTGT+CGG - Chr1:38388229-38388248 MsG0180002435.01.T01:CDS 40.0%
! AGTCTCTTCCTTTTTGCGTA+TGG + Chr1:38383297-38383316 None:intergenic 40.0%
! AGTTTCTGGGTCTGAAGAAA+TGG - Chr1:38389289-38389308 MsG0180002435.01.T01:CDS 40.0%
! CTTGCCATTCGTTGGTTATT+AGG - Chr1:38383188-38383207 MsG0180002435.01.T01:intron 40.0%
! GAATTAGTGGATGTTGCCAA+AGG - Chr1:38383260-38383279 MsG0180002435.01.T01:intron 40.0%
! GATCATCAGGTACACGATTT+TGG - Chr1:38389102-38389121 MsG0180002435.01.T01:CDS 40.0%
! GTTTCTGGGTCTGAAGAAAT+GGG - Chr1:38389290-38389309 MsG0180002435.01.T01:CDS 40.0%
! GTTTTACGTCAAGCAATACG+TGG - Chr1:38383074-38383093 MsG0180002435.01.T01:CDS 40.0%
! TACCAAAGCCCCTTTTCTTT+AGG - Chr1:38387521-38387540 MsG0180002435.01.T01:intron 40.0%
! TAGGGTGATCCTTTTGTTGA+CGG + Chr1:38384685-38384704 None:intergenic 40.0%
! TATGAAAGACTAGTCAAGGG+AGG + Chr1:38386929-38386948 None:intergenic 40.0%
! TCCTAATCCTGAACTTTTCG+AGG + Chr1:38384844-38384863 None:intergenic 40.0%
!! AGCTCTTCTATTCTGGTTCA+TGG - Chr1:38384149-38384168 MsG0180002435.01.T01:intron 40.0%
!! GGTTGGCTAGTGTTTTATGA+AGG + Chr1:38387843-38387862 None:intergenic 40.0%
!! GTGTTATTTGGTCTACGTAC+TGG - Chr1:38385377-38385396 MsG0180002435.01.T01:CDS 40.0%
!! TATAGCACCGACACTTCTTA+AGG + Chr1:38388239-38388258 None:intergenic 40.0%
!! TTCTGGTTCATGGTTTCTCT+TGG - Chr1:38384159-38384178 MsG0180002435.01.T01:intron 40.0%
AAAACGTCCGGGTCGAAATA+TGG - Chr1:38383220-38383239 MsG0180002435.01.T01:intron 45.0%
AAGTTATGTCTTGGTCCGAG+TGG + Chr1:38384458-38384477 None:intergenic 45.0%
ACAAGGCTCACCTACAAGTA+AGG - Chr1:38387617-38387636 MsG0180002435.01.T01:intron 45.0%
ACGCAACAATGTATCGTTGC+AGG + Chr1:38386290-38386309 None:intergenic 45.0%
AGAAAAGCAACGACTGGAGT+CGG + Chr1:38385053-38385072 None:intergenic 45.0%
AGAGACATGCTATTCCCACT+CGG - Chr1:38384440-38384459 MsG0180002435.01.T01:intron 45.0%
AGAGACTCATAGAATGGCAG+AGG - Chr1:38383310-38383329 MsG0180002435.01.T01:intron 45.0%
AGCTTGAACCCAATTCCTAC+AGG + Chr1:38384293-38384312 None:intergenic 45.0%
AGTTATGTCTTGGTCCGAGT+GGG + Chr1:38384457-38384476 None:intergenic 45.0%
ATAATGCTCAAGCCTTGGAG+AGG - Chr1:38389244-38389263 MsG0180002435.01.T01:CDS 45.0%
ATCAACCATGCCCGAGAATT+GGG + Chr1:38385982-38386001 None:intergenic 45.0%
ATGAGATCCAGTCTTCTCAG+CGG - Chr1:38386454-38386473 MsG0180002435.01.T01:intron 45.0%
CAAGAAAGTAACCCTCTCCA+AGG + Chr1:38389259-38389278 None:intergenic 45.0%
CATGAGACTTTCATCTCGCA+CGG + Chr1:38384976-38384995 None:intergenic 45.0%
CATTATGCAGGTATCTGCAC+TGG - Chr1:38387458-38387477 MsG0180002435.01.T01:intron 45.0%
CCATTGATAAGAAGGGGCTA+GGG + Chr1:38384318-38384337 None:intergenic 45.0%
CGAGATGAAAGTCTCATGCA+CGG - Chr1:38384978-38384997 MsG0180002435.01.T01:CDS 45.0%
CTCATGTCATCGACATGTGT+TGG - Chr1:38388197-38388216 MsG0180002435.01.T01:CDS 45.0%
CTGAACCCGTTTATCATACC+GGG + Chr1:38384530-38384549 None:intergenic 45.0%
CTGACGTATATGAAGGAGTG+CGG - Chr1:38384342-38384361 MsG0180002435.01.T01:intron 45.0%
CTTGACCTAGACTTTGCAAC+TGG - Chr1:38388624-38388643 MsG0180002435.01.T01:intron 45.0%
GACCTACCTGACCACATTAT+TGG - Chr1:38386510-38386529 MsG0180002435.01.T01:intron 45.0%
GAGTCAGGAACAATGAATCC+CGG - Chr1:38384509-38384528 MsG0180002435.01.T01:intron 45.0%
GATGGCTCAACTAAGCACTT+TGG - Chr1:38383489-38383508 MsG0180002435.01.T01:intron 45.0%
GCAAGCAGGCCTATATTTCT+TGG - Chr1:38385544-38385563 MsG0180002435.01.T01:intron 45.0%
GCGCTTATATTCATCCCTGT+AGG - Chr1:38384275-38384294 MsG0180002435.01.T01:intron 45.0%
GCTTGAACCCAATTCCTACA+GGG + Chr1:38384292-38384311 None:intergenic 45.0%
GTAAAAGCAAGACGCGTAAG+CGG - Chr1:38383116-38383135 MsG0180002435.01.T01:CDS 45.0%
GTCTTATACATACGCGAGGA+AGG - Chr1:38384897-38384916 MsG0180002435.01.T01:intron 45.0%
TAATGCTCAAGCCTTGGAGA+GGG - Chr1:38389245-38389264 MsG0180002435.01.T01:CDS 45.0%
TATCAACCATGCCCGAGAAT+TGG + Chr1:38385983-38386002 None:intergenic 45.0%
TCCATTGATAAGAAGGGGCT+AGG + Chr1:38384319-38384338 None:intergenic 45.0%
TCTTGGCTATATGGTTCGTC+CGG - Chr1:38384176-38384195 MsG0180002435.01.T01:intron 45.0%
TGATAGAAGGAGGATTCCCA+TGG - Chr1:38387038-38387057 MsG0180002435.01.T01:intron 45.0%
TGCGCCTAATAACCAACGAA+TGG + Chr1:38383195-38383214 None:intergenic 45.0%
TGGACTCCTGACGTATATGA+AGG - Chr1:38384335-38384354 MsG0180002435.01.T01:intron 45.0%
TGGCTCAACTAAGCACTTTG+GGG - Chr1:38383491-38383510 MsG0180002435.01.T01:intron 45.0%
TTATGCAGGTATCTGCACTG+GGG - Chr1:38387460-38387479 MsG0180002435.01.T01:intron 45.0%
TTCGAGGAATCCTTCATCAG+TGG + Chr1:38384828-38384847 None:intergenic 45.0%
! CTTCTTAAGGAAGGTGTGTC+CGG + Chr1:38388226-38388245 None:intergenic 45.0%
! GAAAAGGGGCTTTGGTAATC+TGG + Chr1:38387518-38387537 None:intergenic 45.0%
! GACTTGCTCTTATGGAACCT+AGG + Chr1:38384774-38384793 None:intergenic 45.0%
! TATTTCGACCCGGACGTTTT+CGG + Chr1:38383220-38383239 None:intergenic 45.0%
! TGGTAATCTGGAGTTCAACC+AGG + Chr1:38387506-38387525 None:intergenic 45.0%
! TTCGGTCTTATACATACGCG+AGG - Chr1:38384893-38384912 MsG0180002435.01.T01:intron 45.0%
!! CTTACGCGTCTTGCTTTTAC+TGG + Chr1:38383116-38383135 None:intergenic 45.0%
!! GAAAAGCACTTGCCATTCGT+TGG - Chr1:38383180-38383199 MsG0180002435.01.T01:CDS 45.0%
!! GCACGTGAGGAGTTATTTCT+TGG + Chr1:38385649-38385668 None:intergenic 45.0%
!! GCCCCTTTTCTTTAGGAATC+TGG - Chr1:38387528-38387547 MsG0180002435.01.T01:intron 45.0%
!! TAGGAGCATCCGTCAACAAA+AGG - Chr1:38384673-38384692 MsG0180002435.01.T01:intron 45.0%
!!! CCTCCACTAGCAGGTTTTTT+CGG - Chr1:38385494-38385513 MsG0180002435.01.T01:intron 45.0%
!! TTAAATATTTATTGAAAAAT+CGG + Chr1:38388859-38388878 None:intergenic 5.0%
ACTCGTGTGAAACCGATCCA+CGG - Chr1:38385954-38385973 MsG0180002435.01.T01:intron 50.0%
AGGCTATAGCTTAGCCGCTT+TGG + Chr1:38386270-38386289 None:intergenic 50.0%
CATCGACATGTGTTGGACAC+CGG - Chr1:38388204-38388223 MsG0180002435.01.T01:CDS 50.0%
CCCTAGCCCCTTCTTATCAA+TGG - Chr1:38384315-38384334 MsG0180002435.01.T01:intron 50.0%
CCGAAAAAACCTGCTAGTGG+AGG + Chr1:38385497-38385516 None:intergenic 50.0%
CGCACTCCTTCATATACGTC+AGG + Chr1:38384344-38384363 None:intergenic 50.0%
CTTGGCTATATGGTTCGTCC+GGG - Chr1:38384177-38384196 MsG0180002435.01.T01:intron 50.0%
GGAGAGTCAGAGTCGAAAAG+AGG + Chr1:38385032-38385051 None:intergenic 50.0%
TAGTGGAGGAAGACCTCCTA+AGG + Chr1:38385483-38385502 None:intergenic 50.0%
TCATGGGTTCTTCTCTCCGT+CGG + Chr1:38383815-38383834 None:intergenic 50.0%
TGGCGATGCCATACGCAAAA+AGG - Chr1:38383286-38383305 MsG0180002435.01.T01:intron 50.0%
TGGGGCAAGCTCTTCTATTC+TGG - Chr1:38384142-38384161 MsG0180002435.01.T01:intron 50.0%
TTGAAGCTCTATCTCTCCCC+CGG + Chr1:38384198-38384217 None:intergenic 50.0%
TTGGCTATATGGTTCGTCCG+GGG - Chr1:38384178-38384197 MsG0180002435.01.T01:intron 50.0%
! ATTTCGACCCGGACGTTTTC+GGG + Chr1:38383219-38383238 None:intergenic 50.0%
! GCACCGACACTTCTTAAGGA+AGG + Chr1:38388235-38388254 None:intergenic 50.0%
! GGCAAGTGCTTTTCCTTGTG+TGG + Chr1:38383174-38383193 None:intergenic 50.0%
! TAGCCGCTTTGGATCTGCTA+GGG + Chr1:38386259-38386278 None:intergenic 50.0%
! TTAGCCGCTTTGGATCTGCT+AGG + Chr1:38386260-38386279 None:intergenic 50.0%
ACCCCCTAGCAGATCCAAAG+CGG - Chr1:38386253-38386272 MsG0180002435.01.T01:intron 55.0%
ACCTTTGCCGCTGAGAAGAC+TGG + Chr1:38386464-38386483 None:intergenic 55.0%
ATCCACGGGTCCCAATTCTC+GGG - Chr1:38385969-38385988 MsG0180002435.01.T01:intron 55.0%
CAGCGGCAAAGGTCCAACAA+CGG - Chr1:38386471-38386490 MsG0180002435.01.T01:intron 55.0%
CTCGTGTGAAACCGATCCAC+GGG - Chr1:38385955-38385974 MsG0180002435.01.T01:intron 55.0%
CTTCCTGCTGTAGACGCTGT+TGG - Chr1:38386549-38386568 MsG0180002435.01.T01:intron 55.0%
GAGAATTGGGACCCGTGGAT+CGG + Chr1:38385969-38385988 None:intergenic 55.0%
GATCCACGGGTCCCAATTCT+CGG - Chr1:38385968-38385987 MsG0180002435.01.T01:intron 55.0%
GTGGATGTTGCCAAAGGGAG+TGG - Chr1:38383266-38383285 MsG0180002435.01.T01:intron 55.0%
TAACGGCGCTGTTGTTCCGA+CGG - Chr1:38383796-38383815 MsG0180002435.01.T01:intron 55.0%
TATGGCATCGCCACTCCCTT+TGG + Chr1:38383279-38383298 None:intergenic 55.0%
TCCAGTCTTCTCAGCGGCAA+AGG - Chr1:38386460-38386479 MsG0180002435.01.T01:intron 55.0%
TGGCTATATGGTTCGTCCGG+GGG - Chr1:38384179-38384198 MsG0180002435.01.T01:intron 55.0%
TTCTGGTGTGGATGGCAAGC+AGG - Chr1:38385530-38385549 MsG0180002435.01.T01:intron 55.0%
! AGCCGCTTTGGATCTGCTAG+GGG + Chr1:38386258-38386277 None:intergenic 55.0%
! GTGGATCGGTTTCACACGAG+TGG + Chr1:38385955-38385974 None:intergenic 55.0%
AGGCGCATCCCGAAAACGTC+CGG - Chr1:38383208-38383227 MsG0180002435.01.T01:intron 60.0%
GGAGGTCTTCCTCCACTAGC+AGG - Chr1:38385485-38385504 MsG0180002435.01.T01:intron 60.0%
GTGCCAACAGCGTCTACAGC+AGG + Chr1:38386555-38386574 None:intergenic 60.0%
! GCCGCTTTGGATCTGCTAGG+GGG + Chr1:38386257-38386276 None:intergenic 60.0%
CGGGTCCCAATTCTCGGGCA+TGG - Chr1:38385974-38385993 MsG0180002435.01.T01:intron 65.0%
GGCGCATCCCGAAAACGTCC+GGG - Chr1:38383209-38383228 MsG0180002435.01.T01:intron 65.0%
TGCCCGAGAATTGGGACCCG+TGG + Chr1:38385974-38385993 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 38382966 38389347 38382966 ID=MsG0180002435.01;Name=MsG0180002435.01
Chr1 mRNA 38382966 38389347 38382966 ID=MsG0180002435.01.T01;Parent=MsG0180002435.01;Name=MsG0180002435.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|4|0|474
Chr1 exon 38388957 38389347 38388957 ID=MsG0180002435.01.T01:exon:12831;Parent=MsG0180002435.01.T01
Chr1 exon 38387950 38388268 38387950 ID=MsG0180002435.01.T01:exon:12832;Parent=MsG0180002435.01.T01
Chr1 exon 38384953 38385430 38384953 ID=MsG0180002435.01.T01:exon:12833;Parent=MsG0180002435.01.T01
Chr1 exon 38382966 38383202 38382966 ID=MsG0180002435.01.T01:exon:12834;Parent=MsG0180002435.01.T01
Chr1 CDS 38388957 38389347 38388957 ID=MsG0180002435.01.T01:cds;Parent=MsG0180002435.01.T01
Chr1 CDS 38387950 38388268 38387950 ID=MsG0180002435.01.T01:cds;Parent=MsG0180002435.01.T01
Chr1 CDS 38384953 38385430 38384953 ID=MsG0180002435.01.T01:cds;Parent=MsG0180002435.01.T01
Chr1 CDS 38382966 38383202 38382966 ID=MsG0180002435.01.T01:cds;Parent=MsG0180002435.01.T01
Gene Sequence

>MsG0180002435.01.T01

ATGTTGGTTAACCGTATTATGAAACATGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAGGATTCAACAAAAGATAGAAATAAATCCACTATTTGTTTTACGTCAAGCAATACGTGGGGTAACTCCCGATATACCAGTAAAAGCAAGACGCGTAAGCGGATCGACTCATCAAGTTCCCGTTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGCGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGTTGCCAAAGGGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCCTCTAGAATGTTTCAGTTTATGCTCCTATCTACTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTATGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCGTCCGGGGGAGAGATAGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCTGGAATTTCAATTGCGCTTATATTCATCCCTGTAGGAATTGGGTTCAAGCTTTCCCTAGCCCCTTCTTATCAATGGACTCCTGACGTATATGAAGGAGTGCGTCCTTTAGAGGAATTAGTTTTGAAAAATTGGCTTATCATAGTTCCTCCCTTGACTAGTCTTTCATATCTTACTACTCTTCAATTATCTAAAACCACGGTTATTTGTTACGATTCGAAAGATCTAACACTTAAATTCCCAGTTCATAGAAAGTTTGTGATAGAAGGAGGATTCCCATGGTCAACTAATATAAAGAATGTCACTTTACATGCGCCTATACTTGAAGTTGTTTCAATGGACTATGGTAGTACACATCACTGGTCAAATGCTAAAATTAAGTTATGTGCTTCACGTCTTACAAAGTTTTGCTATGCTGGTTCTTTTTTATCGGAGATCATTCTGCTAGACGCAATACACATTATTTCTGCAAATATCAGGCTATATAGTTCAAAAAAGAGTATAGAAGAAACGATGCATTTTGTTAGCAAACTTCTCAGTATTAATGCAGCAAGGCTTAAGCTTTGTGTGCATAGTAAGAAGGTACACGATTTTGGTGACACGCTGCTTAGCTCTACATTTATGCCGAGTTGTTTTCTCTTTACCCTTAAAGTGGTCAAATTTGAAAGATTTGCTGGTACCAAGCATGAGTTAAATTTCGCTAAATTTGTGATGAATAATGCTCAAGCCTTGGAGAGGGTTACTTTCTTGTGTTGTCCTAAGTTTCTGGGTCTGAAGAAATGGGAAAATGTTAGGTATCTTCATACAAGTCTGCTTTAA
Protein sequence

>MsG0180002435.01.T01

MLVNRIMKHGKKSLAYQIIYRAMKRIQQKIEINPLFVLRQAIRGVTPDIPVKARRVSGSTHQVPVEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDVAKGSGDAIRKKEETHRMAEANRAFAHFPLECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFIPVGIGFKLSLAPSYQWTPDVYEGVRPLEELVLKNWLIIVPPLTSLSYLTTLQLSKTTVICYDSKDLTLKFPVHRKFVIEGGFPWSTNIKNVTLHAPILEVVSMDYGSTHHWSNAKIKLCASRLTKFCYAGSFLSEIILLDAIHIISANIRLYSSKKSIEETMHFVSKLLSINAARLKLCVHSKKVHDFGDTLLSSTFMPSCFLFTLKVVKFERFAGTKHELNFAKFVMNNAQALERVTFLCCPKFLGLKKWENVRYLHTSLL*