Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014030.01.T02 | RHN44675.1 | 92.265 | 181 | 11 | 1 | 1 | 178 | 5 | 185 | 2.95E-109 | 321 |
| MsG0380014030.01.T03 | RHN44675.1 | 95.93 | 172 | 7 | 0 | 1 | 172 | 5 | 176 | 4.48E-111 | 324 |
| MsG0380014030.01.T01 | AES77909.1 | 79.511 | 327 | 10 | 2 | 1 | 270 | 426 | 752 | 3.83E-168 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014030.01.T01 | P15958 | 92.188 | 192 | 15 | 0 | 79 | 270 | 531 | 722 | 1.56E-119 | 362 |
| MsG0380014030.01.T02 | P15958 | 87.293 | 181 | 20 | 1 | 1 | 178 | 555 | 735 | 1.66E-102 | 314 |
| MsG0380014030.01.T03 | P15958 | 90.698 | 172 | 16 | 0 | 1 | 172 | 555 | 726 | 7.94E-104 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014030.01.T01 | G7KTU5 | 79.511 | 327 | 10 | 2 | 1 | 270 | 426 | 752 | 1.83e-168 | 496 |
| MsG0380014030.01.T02 | A0A4P8F318 | 98.810 | 168 | 2 | 0 | 1 | 168 | 555 | 722 | 3.77e-106 | 330 |
| MsG0380014030.01.T03 | A0A396H0N0 | 95.930 | 172 | 7 | 0 | 1 | 172 | 5 | 176 | 2.14e-111 | 324 |
| MsG0380014030.01.T03 | A0A4P8F318 | 97.674 | 172 | 4 | 0 | 1 | 172 | 555 | 726 | 4.20e-108 | 334 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048689.01 | MsG0380014030.01 | 0.802004 | 6.889437e-49 | 3.337665e-46 |
| MsG0080048698.01 | MsG0380014030.01 | 0.822710 | 2.047644e-53 | 1.727223e-50 |
| MsG0080048813.01 | MsG0380014030.01 | 0.808136 | 3.591064e-50 | 2.037082e-47 |
| MsG0080049016.01 | MsG0380014030.01 | 0.821656 | 3.595844e-53 | 2.943355e-50 |
| MsG0080049018.01 | MsG0380014030.01 | 0.801021 | 1.095718e-48 | 5.178393e-46 |
| MsG0180000502.01 | MsG0380014030.01 | 0.840057 | 1.093674e-57 | 1.539779e-54 |
| MsG0180002226.01 | MsG0380014030.01 | 0.827308 | 1.680508e-54 | 1.616341e-51 |
| MsG0180002435.01 | MsG0380014030.01 | 0.816481 | 5.409399e-52 | 3.837369e-49 |
| MsG0180004937.01 | MsG0380014030.01 | 0.815118 | 1.088717e-51 | 7.440347e-49 |
| MsG0180005791.01 | MsG0380014030.01 | 0.806227 | 9.113474e-50 | 4.920204e-47 |
| MsG0380013448.01 | MsG0380014030.01 | 0.822955 | 1.795467e-53 | 1.525043e-50 |
| MsG0380013888.01 | MsG0380014030.01 | 0.810909 | 9.117982e-51 | 5.565971e-48 |
| MsG0380013889.01 | MsG0380014030.01 | 0.818350 | 2.051793e-52 | 1.532245e-49 |
| MsG0380013916.01 | MsG0380014030.01 | 0.815262 | 1.011440e-51 | 6.939671e-49 |
| MsG0380013917.01 | MsG0380014030.01 | 0.825544 | 4.424137e-54 | 4.044628e-51 |
| MsG0380013918.01 | MsG0380014030.01 | 0.819012 | 1.451693e-52 | 1.104132e-49 |
| MsG0380013919.01 | MsG0380014030.01 | 0.829403 | 5.248096e-55 | 5.366242e-52 |
| MsG0380013920.01 | MsG0380014030.01 | 0.828425 | 9.054821e-55 | 8.997034e-52 |
| MsG0380013926.01 | MsG0380014030.01 | 0.805385 | 1.369170e-49 | 7.233711e-47 |
| MsG0380013929.01 | MsG0380014030.01 | 0.866509 | 2.706265e-65 | 9.143874e-62 |
| MsG0380013931.01 | MsG0380014030.01 | 0.848823 | 4.795329e-60 | 8.910917e-57 |
| MsG0380013932.01 | MsG0380014030.01 | 0.865272 | 6.661821e-65 | 2.154490e-61 |
| MsG0380013939.01 | MsG0380014030.01 | 0.848196 | 7.150146e-60 | 1.301757e-56 |
| MsG0380013941.01 | MsG0380014030.01 | 0.800384 | 1.478168e-48 | 6.873486e-46 |
| MsG0380013942.01 | MsG0380014030.01 | 0.815950 | 7.107196e-52 | 4.969246e-49 |
| MsG0380013948.01 | MsG0380014030.01 | 0.806620 | 7.528204e-50 | 4.104990e-47 |
| MsG0380013949.01 | MsG0380014030.01 | 0.816516 | 5.312588e-52 | 3.772346e-49 |
| MsG0380013950.01 | MsG0380014030.01 | 0.822791 | 1.960306e-53 | 1.657347e-50 |
| MsG0380013952.01 | MsG0380014030.01 | 0.814629 | 1.398030e-51 | 9.429214e-49 |
| MsG0380013958.01 | MsG0380014030.01 | 0.826944 | 2.053759e-54 | 1.954378e-51 |
| MsG0380013964.01 | MsG0380014030.01 | 0.848552 | 5.697889e-60 | 1.049529e-56 |
| MsG0380013965.01 | MsG0380014030.01 | 0.841216 | 5.436624e-58 | 7.932723e-55 |
| MsG0380013969.01 | MsG0380014030.01 | 0.809602 | 1.745029e-50 | 1.029089e-47 |
| MsG0380013972.01 | MsG0380014030.01 | 0.842620 | 2.313206e-58 | 3.527161e-55 |
| MsG0380013978.01 | MsG0380014030.01 | 0.850515 | 1.615387e-60 | 3.171983e-57 |
| MsG0380013979.01 | MsG0380014030.01 | 0.808400 | 3.154912e-50 | 1.802192e-47 |
| MsG0380013980.01 | MsG0380014030.01 | 0.858335 | 8.841872e-63 | 2.248756e-59 |
| MsG0380013981.01 | MsG0380014030.01 | 0.860313 | 2.252691e-63 | 6.131110e-60 |
| MsG0380013983.01 | MsG0380014030.01 | 0.815187 | 1.051129e-51 | 7.196861e-49 |
| MsG0380013995.01 | MsG0380014030.01 | 0.851047 | 1.144186e-60 | 2.286467e-57 |
| MsG0380014004.01 | MsG0380014030.01 | 0.816480 | 5.412838e-52 | 3.839704e-49 |
| MsG0380014008.01 | MsG0380014030.01 | 0.805128 | 1.549846e-49 | 8.134754e-47 |
| MsG0380014009.01 | MsG0380014030.01 | 0.805310 | 1.420005e-49 | 7.487872e-47 |
| MsG0380014013.01 | MsG0380014030.01 | 0.820112 | 8.146564e-53 | 6.389072e-50 |
| MsG0380014022.01 | MsG0380014030.01 | 0.808312 | 3.294795e-50 | 1.877698e-47 |
| MsG0380014030.01 | MsG0380014034.01 | 0.817681 | 2.906388e-52 | 2.130734e-49 |
| MsG0380014030.01 | MsG0380014035.01 | 0.820330 | 7.262258e-53 | 5.728803e-50 |
| MsG0380014030.01 | MsG0380014036.01 | 0.859988 | 2.825375e-63 | 7.605430e-60 |
| MsG0380014030.01 | MsG0380014038.01 | 0.821646 | 3.614436e-53 | 2.957715e-50 |
| MsG0380014030.01 | MsG0380014041.01 | 0.805628 | 1.218079e-49 | 6.475809e-47 |
| MsG0380014030.01 | MsG0380014048.01 | 0.835265 | 1.856064e-56 | 2.258120e-53 |
| MsG0380014030.01 | MsG0380014050.01 | 0.828033 | 1.125443e-54 | 1.105581e-51 |
| MsG0380014030.01 | MsG0380014051.01 | 0.839491 | 1.534879e-57 | 2.123148e-54 |
| MsG0380014030.01 | MsG0380014129.01 | 0.800732 | 1.255256e-48 | 5.888544e-46 |
| MsG0380014030.01 | MsG0380016492.01 | 0.813273 | 2.782645e-51 | 1.808966e-48 |
| MsG0380014030.01 | MsG0380016723.01 | 0.839250 | 1.773410e-57 | 2.434820e-54 |
| MsG0380014030.01 | MsG0380017006.01 | 0.854497 | 1.183251e-61 | 2.647624e-58 |
| MsG0380014030.01 | MsG0380017007.01 | 0.812815 | 3.506932e-51 | 2.251800e-48 |
| MsG0380014030.01 | MsG0480018088.01 | 0.800162 | 1.639887e-48 | 7.582206e-46 |
| MsG0380014030.01 | MsG0480021474.01 | 0.808259 | 3.381973e-50 | 1.924742e-47 |
| MsG0380014030.01 | MsG0480023006.01 | 0.817271 | 3.595511e-52 | 2.606390e-49 |
| MsG0380014030.01 | MsG0480023344.01 | 0.812051 | 5.148707e-51 | 3.239493e-48 |
| MsG0380014030.01 | MsG0480023708.01 | 0.832857 | 7.441396e-56 | 8.421940e-53 |
| MsG0380014030.01 | MsG0480023850.01 | 0.817572 | 3.076774e-52 | 2.248833e-49 |
| MsG0380014030.01 | MsG0580028231.01 | 0.826692 | 2.359281e-54 | 2.228632e-51 |
| MsG0380014030.01 | MsG0580029706.01 | 0.825886 | 3.670209e-54 | 3.388510e-51 |
| MsG0380014030.01 | MsG0580029820.01 | 0.810918 | 9.076261e-51 | 5.542031e-48 |
| MsG0380014030.01 | MsG0680033966.01 | 0.800570 | 1.354381e-48 | 6.327519e-46 |
| MsG0380014030.01 | MsG0780036586.01 | 0.808770 | 2.629954e-50 | 1.516785e-47 |
| MsG0380014030.01 | MsG0780038140.01 | 0.817343 | 3.463206e-52 | 2.515541e-49 |
| MsG0380014030.01 | MsG0780038197.01 | 0.813277 | 2.777056e-51 | 1.805577e-48 |
| MsG0380014030.01 | MsG0780040316.01 | 0.812390 | 4.342128e-51 | 2.757386e-48 |
| MsG0380014030.01 | MsG0780040317.01 | 0.843921 | 1.040440e-58 | 1.652925e-55 |
| MsG0380014030.01 | MsG0780041022.01 | 0.810132 | 1.341796e-50 | 8.023485e-48 |
| MsG0380014030.01 | MsG0780041024.01 | 0.800140 | 1.657069e-48 | 7.657714e-46 |
| MsG0380014030.01 | MsG0780041618.01 | 0.810805 | 9.603038e-51 | 5.845566e-48 |
| MsG0380014030.01 | MsG0780041768.01 | 0.800490 | 1.406310e-48 | 6.556849e-46 |
| MsG0380014030.01 | MsG0780041792.01 | 0.810650 | 1.037477e-50 | 6.289275e-48 |
| MsG0380014030.01 | MsG0880043541.01 | 0.811105 | 8.269500e-51 | 5.074067e-48 |
| MsG0380014030.01 | MsG0880044440.01 | 0.821269 | 4.417006e-53 | 3.576412e-50 |
| MsG0380014030.01 | MsG0880045283.01 | 0.845480 | 3.956665e-59 | 6.602777e-56 |
| MsG0380014030.01 | MsG0880046456.01 | 0.806969 | 6.352496e-50 | 3.495411e-47 |
| MsG0380014030.01 | MsG0880046856.01 | 0.826127 | 3.217349e-54 | 2.990614e-51 |
| MsG0380014030.01 | MsG0880047251.01 | 0.804306 | 2.301269e-49 | 1.182525e-46 |
| MsG0280007041.01 | MsG0380014030.01 | 0.815562 | 8.673745e-52 | 6.000587e-49 |
| MsG0280007042.01 | MsG0380014030.01 | 0.836641 | 8.307653e-57 | 1.053248e-53 |
| MsG0280007600.01 | MsG0380014030.01 | 0.840733 | 7.277005e-58 | 1.046121e-54 |
| MsG0280008233.01 | MsG0380014030.01 | 0.803061 | 4.172417e-49 | 2.076434e-46 |
| MsG0280010145.01 | MsG0380014030.01 | 0.803134 | 4.028809e-49 | 2.008796e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014030.01.T02 | MTR_4g051300 | 93.820 | 178 | 8 | 1 | 1 | 175 | 555 | 732 | 1.00e-106 | 323 |
| MsG0380014030.01.T02 | MTR_7g021740 | 97.024 | 168 | 5 | 0 | 1 | 168 | 585 | 752 | 3.10e-106 | 323 |
| MsG0380014030.01.T02 | MTR_6g091660 | 80.556 | 36 | 7 | 0 | 1 | 36 | 5 | 40 | 7.39e-11 | 56.2 |
| MsG0380014030.01.T03 | MTR_4g051300 | 95.930 | 172 | 7 | 0 | 1 | 172 | 555 | 726 | 1.40e-108 | 327 |
| MsG0380014030.01.T03 | MTR_7g021740 | 97.041 | 169 | 5 | 0 | 1 | 169 | 585 | 753 | 8.54e-108 | 326 |
| MsG0380014030.01.T03 | MTR_6g091660 | 80.556 | 36 | 7 | 0 | 1 | 36 | 5 | 40 | 2.77e-11 | 56.6 |
| MsG0380014030.01.T01 | MTR_7g021740 | 79.511 | 327 | 10 | 2 | 1 | 270 | 426 | 752 | 4.63e-172 | 496 |
| MsG0380014030.01.T01 | MTR_4g051300 | 97.917 | 192 | 4 | 0 | 79 | 270 | 531 | 722 | 3.51e-125 | 375 |
| MsG0380014030.01.T01 | MTR_4g051300 | 86.170 | 94 | 9 | 1 | 1 | 90 | 381 | 474 | 6.74e-47 | 167 |
| MsG0380014030.01.T01 | MTR_0002s0200 | 50.000 | 168 | 62 | 5 | 1 | 147 | 298 | 464 | 4.47e-36 | 134 |
| MsG0380014030.01.T01 | MTR_6g091660 | 82.500 | 40 | 7 | 0 | 99 | 138 | 1 | 40 | 6.35e-13 | 62.8 |
| MsG0380014030.01.T01 | MTR_3g032590 | 68.085 | 47 | 11 | 1 | 48 | 90 | 26 | 72 | 3.99e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014030.01.T02 | ATCG01010 | 62.712 | 177 | 66 | 0 | 1 | 177 | 551 | 727 | 8.45e-66 | 215 |
| MsG0380014030.01.T03 | ATCG01010 | 64.368 | 174 | 62 | 0 | 1 | 174 | 551 | 724 | 7.32e-67 | 217 |
| MsG0380014030.01.T01 | ATCG01010 | 62.562 | 203 | 69 | 1 | 82 | 284 | 530 | 725 | 2.73e-74 | 241 |
| MsG0380014030.01.T01 | ATCG01010 | 89.024 | 82 | 9 | 0 | 1 | 82 | 381 | 462 | 7.99e-43 | 156 |
Find 35 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTCAAAATATGGTTCTTA+TGG | 0.176674 | 3:-48689638 | None:intergenic |
| CAAGCTATTATTGCGAAAAT+TGG | 0.226715 | 3:+48689484 | None:intergenic |
| TTTCTTGATAGTACCTATTT+TGG | 0.238825 | 3:-48689189 | MsG0380014030.01.T01:intron |
| TATCCAAATCTATTGGTTCT+TGG | 0.281244 | 3:+48689052 | None:intergenic |
| CAGCCAAGAACCAATAGATT+TGG | 0.311322 | 3:-48689055 | MsG0380014030.01.T01:CDS |
| GATGGAATTCCAAATGGAAT+TGG | 0.315379 | 3:-48688676 | MsG0380014030.01.T01:CDS |
| TTTGATAGACAAGTAATTGA+TGG | 0.319357 | 3:-48688694 | MsG0380014030.01.T01:CDS |
| GATAAAATATCCAAATCTAT+TGG | 0.326000 | 3:+48689045 | None:intergenic |
| CTGGAAATCCCAATTCCATT+TGG | 0.377156 | 3:+48688667 | None:intergenic |
| ATAGGTACACTTTCTCTTTG+TGG | 0.397350 | 3:-48689571 | MsG0380014030.01.T01:CDS |
| ATGGAATTCCAAATGGAATT+GGG | 0.401786 | 3:-48688675 | MsG0380014030.01.T01:CDS |
| TAATCAATGTTATATATGAT+TGG | 0.429297 | 3:-48688801 | MsG0380014030.01.T01:CDS |
| TACTATTTACTTTCTTCGTC+GGG | 0.431002 | 3:-48689095 | MsG0380014030.01.T01:CDS |
| ATGAGATTCTAAATGATAGT+TGG | 0.450388 | 3:-48689516 | MsG0380014030.01.T01:CDS |
| AGTCAAAATATGGTTCTTAT+GGG | 0.452361 | 3:-48689637 | None:intergenic |
| GTACTATTTACTTTCTTCGT+CGG | 0.453525 | 3:-48689096 | MsG0380014030.01.T01:CDS |
| ATTCAAAGAATTCTGTGGAT+TGG | 0.454299 | 3:-48688984 | MsG0380014030.01.T01:CDS |
| ATCATTTAGAATCTCATCCT+TGG | 0.455078 | 3:+48689522 | None:intergenic |
| TTTAATTGCGAGTGTAAGAA+AGG | 0.472458 | 3:-48688737 | MsG0380014030.01.T01:CDS |
| GTAATTGATGGAATTCCAAA+TGG | 0.479083 | 3:-48688682 | MsG0380014030.01.T01:CDS |
| TTGGCTGAAAGAAATTCCTA+TGG | 0.484137 | 3:+48689071 | None:intergenic |
| ACTTTCTTCGTCGGGTCCAT+AGG | 0.488135 | 3:-48689087 | MsG0380014030.01.T01:CDS |
| ATAATAGCTTGTTCCACAGC+AGG | 0.495058 | 3:-48689472 | MsG0380014030.01.T01:CDS |
| AGGCTATCAAATATGTGGGG+GGG | 0.500515 | 3:-48688630 | MsG0380014030.01.T01:CDS |
| AGGAGAGGCTATCAAATATG+TGG | 0.517946 | 3:-48688635 | MsG0380014030.01.T01:CDS |
| GGAGAGGCTATCAAATATGT+GGG | 0.533058 | 3:-48688634 | MsG0380014030.01.T01:CDS |
| TCAAAATTCAAAGAATTCTG+TGG | 0.549214 | 3:-48688989 | MsG0380014030.01.T01:CDS |
| AGAGGCTATCAAATATGTGG+GGG | 0.551171 | 3:-48688632 | MsG0380014030.01.T01:CDS |
| GAGGCTATCAAATATGTGGG+GGG | 0.562788 | 3:-48688631 | MsG0380014030.01.T01:CDS |
| CAAAATATGGTTCTTATGGG+CGG | 0.586133 | 3:-48689634 | None:intergenic |
| TGATGTAAAAGGTCTATAGA+CGG | 0.602599 | 3:+48689009 | None:intergenic |
| AAATGCAGTTAATCCTGCTG+TGG | 0.615776 | 3:+48689459 | None:intergenic |
| ATAGTATTGTCTGATTCATG+AGG | 0.644735 | 3:+48689141 | None:intergenic |
| TATGATTGGTCATATAATCG+TGG | 0.650873 | 3:-48688787 | MsG0380014030.01.T01:CDS |
| GAGAGGCTATCAAATATGTG+GGG | 0.671147 | 3:-48688633 | MsG0380014030.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAACTAATAATAATGAA+AGG | - | Chr3:48688483-48688502 | MsG0380014030.01.T02:intron | 15.0% |
| !! | TAATCAATGTTATATATGAT+TGG | - | Chr3:48688963-48688982 | MsG0380014030.01.T01:CDS | 15.0% |
| !! | TTTCTATTCAATATCTTTAT+GGG | - | Chr3:48688411-48688430 | MsG0380014030.01.T02:intron | 15.0% |
| !!! | TAGAATCTTTTAAAACAAAA+AGG | + | Chr3:48689376-48689395 | None:intergenic | 15.0% |
| !! | ATCTAGATTTAATAGATTCA+TGG | - | Chr3:48689420-48689439 | MsG0380014030.01.T01:CDS | 20.0% |
| !! | CTTTCTATTCAATATCTTTA+TGG | - | Chr3:48688410-48688429 | MsG0380014030.01.T02:intron | 20.0% |
| !! | GATAAAATATCCAAATCTAT+TGG | + | Chr3:48688722-48688741 | None:intergenic | 20.0% |
| !! | GTAATTTAGACTATAGTATA+GGG | + | Chr3:48689518-48689537 | None:intergenic | 20.0% |
| !! | TCTAGATTTAATAGATTCAT+GGG | - | Chr3:48689421-48689440 | MsG0380014030.01.T01:CDS | 20.0% |
| !! | TGTAATTTAGACTATAGTAT+AGG | + | Chr3:48689519-48689538 | None:intergenic | 20.0% |
| !! | TTCTATTCAATATCTTTATG+GGG | - | Chr3:48688412-48688431 | MsG0380014030.01.T02:intron | 20.0% |
| !!! | AATGTTTTTAGTACCAAAAT+AGG | + | Chr3:48688591-48688610 | None:intergenic | 20.0% |
| !!! | ATCTATTTACTTGTTTTTGA+AGG | - | Chr3:48688340-48688359 | MsG0380014030.01.T02:intron | 20.0% |
| !!! | GTTCATTTTCAAAATTTCAA+TGG | - | Chr3:48688373-48688392 | MsG0380014030.01.T02:intron | 20.0% |
| !!! | TCTTTGAATTTTGATGTAAA+AGG | + | Chr3:48688769-48688788 | None:intergenic | 20.0% |
| !!! | TTATCAGCAATAATTTTTTG+AGG | + | Chr3:48688941-48688960 | None:intergenic | 20.0% |
| !!! | TTTTACAAATGCAACTTTTT+CGG | - | Chr3:48688811-48688830 | MsG0380014030.01.T01:CDS | 20.0% |
| !!! | TTTTGTAAAGATGAAAAAAC+TGG | + | Chr3:48688884-48688903 | None:intergenic | 20.0% |
| ! | AAGTGTACCTATTAAAAAAG+CGG | + | Chr3:48688185-48688204 | None:intergenic | 25.0% |
| ! | ACTACTATTCAACCTAAATT+GGG | - | Chr3:48689259-48689278 | MsG0380014030.01.T01:intron | 25.0% |
| ! | ATGAGATTCTAAATGATAGT+TGG | - | Chr3:48688248-48688267 | MsG0380014030.01.T02:intron | 25.0% |
| ! | GATTCATGAGGATAAAAAAA+CGG | + | Chr3:48688614-48688633 | None:intergenic | 25.0% |
| ! | TACTACTATTCAACCTAAAT+TGG | - | Chr3:48689258-48689277 | MsG0380014030.01.T01:intron | 25.0% |
| ! | TCAAAATTCAAAGAATTCTG+TGG | - | Chr3:48688775-48688794 | MsG0380014030.01.T01:CDS | 25.0% |
| ! | TTTGATAGACAAGTAATTGA+TGG | - | Chr3:48689070-48689089 | MsG0380014030.01.T01:CDS | 25.0% |
| !! | AAAAAAGCGGTTTTTGTAAT+TGG | + | Chr3:48688172-48688191 | None:intergenic | 25.0% |
| !! | AAAAAGCGGTTTTTGTAATT+GGG | + | Chr3:48688171-48688190 | None:intergenic | 25.0% |
| !!! | ACAAAAACCGCTTTTTTAAT+AGG | - | Chr3:48688175-48688194 | MsG0380014030.01.T02:CDS | 25.0% |
| !!! | ATGAAAGGACTTCTTTTTTT+CGG | - | Chr3:48688498-48688517 | MsG0380014030.01.T02:intron | 25.0% |
| !!! | TTTCTTGATAGTACCTATTT+TGG | - | Chr3:48688575-48688594 | MsG0380014030.01.T01:CDS | 25.0% |
| ATAGTATTGTCTGATTCATG+AGG | + | Chr3:48688626-48688645 | None:intergenic | 30.0% | |
| ATGGAATTCCAAATGGAATT+GGG | - | Chr3:48689089-48689108 | MsG0380014030.01.T01:CDS | 30.0% | |
| ATTCAAAGAATTCTGTGGAT+TGG | - | Chr3:48688780-48688799 | MsG0380014030.01.T01:CDS | 30.0% | |
| ATTTAGACTATAGTATAGGG+CGG | + | Chr3:48689515-48689534 | None:intergenic | 30.0% | |
| CAAGCTATTATTGCGAAAAT+TGG | + | Chr3:48688283-48688302 | None:intergenic | 30.0% | |
| GTAATTGATGGAATTCCAAA+TGG | - | Chr3:48689082-48689101 | MsG0380014030.01.T01:CDS | 30.0% | |
| GTACTATTTACTTTCTTCGT+CGG | - | Chr3:48688668-48688687 | MsG0380014030.01.T01:CDS | 30.0% | |
| TACTATTTACTTTCTTCGTC+GGG | - | Chr3:48688669-48688688 | MsG0380014030.01.T01:CDS | 30.0% | |
| TGATGTAAAAGGTCTATAGA+CGG | + | Chr3:48688758-48688777 | None:intergenic | 30.0% | |
| TTAGCGTATAATCCCAATTT+AGG | + | Chr3:48689274-48689293 | None:intergenic | 30.0% | |
| TTTAATTGCGAGTGTAAGAA+AGG | - | Chr3:48689027-48689046 | MsG0380014030.01.T01:CDS | 30.0% | |
| ! | AAAAGCGGTTTTTGTAATTG+GGG | + | Chr3:48688170-48688189 | None:intergenic | 30.0% |
| ! | ATCATTTAGAATCTCATCCT+TGG | + | Chr3:48688245-48688264 | None:intergenic | 30.0% |
| ! | TATGATTGGTCATATAATCG+TGG | - | Chr3:48688977-48688996 | MsG0380014030.01.T01:CDS | 30.0% |
| !! | TATCCAAATCTATTGGTTCT+TGG | + | Chr3:48688715-48688734 | None:intergenic | 30.0% |
| !!! | GGGATTTCCAGTTTTTTTAT+AGG | - | Chr3:48689109-48689128 | MsG0380014030.01.T01:CDS | 30.0% |
| !!! | TTCCAGTTTTTTTATAGGAG+AGG | - | Chr3:48689114-48689133 | MsG0380014030.01.T01:CDS | 30.0% |
| AGCCTCTCCTATAAAAAAAC+TGG | + | Chr3:48689119-48689138 | None:intergenic | 35.0% | |
| ATAGGTACACTTTCTCTTTG+TGG | - | Chr3:48688193-48688212 | MsG0380014030.01.T02:CDS | 35.0% | |
| GATGGAATTCCAAATGGAAT+TGG | - | Chr3:48689088-48689107 | MsG0380014030.01.T01:CDS | 35.0% | |
| TACGCTAAGAATTCAAGCTT+CGG | - | Chr3:48689286-48689305 | MsG0380014030.01.T01:intron | 35.0% | |
| TTGGACCAAAAACAAGCAAA+AGG | + | Chr3:48688226-48688245 | None:intergenic | 35.0% | |
| TTGGCTGAAAGAAATTCCTA+TGG | + | Chr3:48688696-48688715 | None:intergenic | 35.0% | |
| !! | TTCCACCTTTTGCTTGTTTT+TGG | - | Chr3:48688218-48688237 | MsG0380014030.01.T02:CDS | 35.0% |
| !!! | TCGGTGAGTATAGCTTTTTT+CGG | - | Chr3:48688830-48688849 | MsG0380014030.01.T01:CDS | 35.0% |
| !!! | TTTTGCTTGTTTTTGGTCCA+AGG | - | Chr3:48688225-48688244 | MsG0380014030.01.T02:CDS | 35.0% |
| AAATGCAGTTAATCCTGCTG+TGG | + | Chr3:48688308-48688327 | None:intergenic | 40.0% | |
| ACGCTAAGAATTCAAGCTTC+GGG | - | Chr3:48689287-48689306 | MsG0380014030.01.T01:intron | 40.0% | |
| AGAGGCTATCAAATATGTGG+GGG | - | Chr3:48689132-48689151 | MsG0380014030.01.T01:CDS | 40.0% | |
| AGGAGAGGCTATCAAATATG+TGG | - | Chr3:48689129-48689148 | MsG0380014030.01.T01:CDS | 40.0% | |
| ATAGATTCATGGGCGAATGA+CGG | - | Chr3:48689431-48689450 | MsG0380014030.01.T01:CDS | 40.0% | |
| CAGCCAAGAACCAATAGATT+TGG | - | Chr3:48688709-48688728 | MsG0380014030.01.T01:CDS | 40.0% | |
| CTGGAAATCCCAATTCCATT+TGG | + | Chr3:48689100-48689119 | None:intergenic | 40.0% | |
| GACCAAAAACAAGCAAAAGG+TGG | + | Chr3:48688223-48688242 | None:intergenic | 40.0% | |
| GAGAGGCTATCAAATATGTG+GGG | - | Chr3:48689131-48689150 | MsG0380014030.01.T01:CDS | 40.0% | |
| GGAGAGGCTATCAAATATGT+GGG | - | Chr3:48689130-48689149 | MsG0380014030.01.T01:CDS | 40.0% | |
| !! | ATAATAGCTTGTTCCACAGC+AGG | - | Chr3:48688292-48688311 | MsG0380014030.01.T02:intron | 40.0% |
| !!! | GGACTTCTTTTTTTCGGAAG+AGG | - | Chr3:48688504-48688523 | MsG0380014030.01.T02:intron | 40.0% |
| AGGCTATCAAATATGTGGGG+GGG | - | Chr3:48689134-48689153 | MsG0380014030.01.T01:CDS | 45.0% | |
| GAGGCTATCAAATATGTGGG+GGG | - | Chr3:48689133-48689152 | MsG0380014030.01.T01:CDS | 45.0% | |
| TAGATTCATGGGCGAATGAC+GGG | - | Chr3:48689432-48689451 | MsG0380014030.01.T01:CDS | 45.0% | |
| ACAGCAGTATCAGCTGCAAC+AGG | - | Chr3:48689322-48689341 | MsG0380014030.01.T01:intron | 50.0% | |
| ACTTTCTTCGTCGGGTCCAT+AGG | - | Chr3:48688677-48688696 | MsG0380014030.01.T01:CDS | 50.0% | |
| ATCCACTGCCTTGATCCACT+TGG | - | Chr3:48689483-48689502 | MsG0380014030.01.T01:CDS | 50.0% | |
| ATTGTGAATCCACCATGCGC+GGG | + | Chr3:48689465-48689484 | None:intergenic | 50.0% | |
| CTATCAAATATGTGGGGGGG+GGG | - | Chr3:48689137-48689156 | MsG0380014030.01.T01:CDS | 50.0% | |
| GATTGTGAATCCACCATGCG+CGG | + | Chr3:48689466-48689485 | None:intergenic | 50.0% | |
| GCTATCAAATATGTGGGGGG+GGG | - | Chr3:48689136-48689155 | MsG0380014030.01.T01:CDS | 50.0% | |
| GGATGTAGCCAAGTGGATCA+AGG | + | Chr3:48689494-48689513 | None:intergenic | 50.0% | |
| GGCTATCAAATATGTGGGGG+GGG | - | Chr3:48689135-48689154 | MsG0380014030.01.T01:CDS | 50.0% | |
| TATCAAATATGTGGGGGGGG+GGG | - | Chr3:48689138-48689157 | MsG0380014030.01.T01:CDS | 50.0% | |
| AGCCAAGTGGATCAAGGCAG+TGG | + | Chr3:48689488-48689507 | None:intergenic | 55.0% | |
| ATAGGGCGGATGTAGCCAAG+TGG | + | Chr3:48689501-48689520 | None:intergenic | 55.0% | |
| ATCAAATATGTGGGGGGGGG+GGG | - | Chr3:48689139-48689158 | MsG0380014030.01.T01:CDS | 55.0% | |
| ACGGGAATTGAACCCGCGCA+TGG | - | Chr3:48689450-48689469 | MsG0380014030.01.T01:CDS | 60.0% | |
| GGAATTGAACCCGCGCATGG+TGG | - | Chr3:48689453-48689472 | MsG0380014030.01.T01:CDS | 60.0% | |
| TCAAATATGTGGGGGGGGGG+GGG | - | Chr3:48689140-48689159 | MsG0380014030.01.T01:CDS | 60.0% | |
| AAATATGTGGGGGGGGGGGG+GGG | - | Chr3:48689142-48689161 | MsG0380014030.01.T01:CDS | 65.0% | |
| CAAATATGTGGGGGGGGGGG+GGG | - | Chr3:48689141-48689160 | MsG0380014030.01.T01:CDS | 65.0% | |
| AATATGTGGGGGGGGGGGGG+GGG | - | Chr3:48689143-48689162 | MsG0380014030.01.T01:CDS | 70.0% | |
| ATATGTGGGGGGGGGGGGGG+GGG | - | Chr3:48689144-48689163 | MsG0380014030.01.T01:CDS | 75.0% | |
| ! | TATGTGGGGGGGGGGGGGGG+GGG | - | Chr3:48689145-48689164 | MsG0380014030.01.T01:CDS | 80.0% |
| ! | ATGTGGGGGGGGGGGGGGGG+GGG | - | Chr3:48689146-48689165 | MsG0380014030.01.T01:CDS | 85.0% |
| ! | TGTGGGGGGGGGGGGGGGGG+GGG | - | Chr3:48689147-48689166 | MsG0380014030.01.T01:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48688136 | 48689650 | 48688136 | ID=MsG0380014030.01;Name=MsG0380014030.01 |
| Chr3 | mRNA | 48688573 | 48689650 | 48688573 | ID=MsG0380014030.01.T01;Parent=MsG0380014030.01;Name=MsG0380014030.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|0|0|2|0|287 |
| Chr3 | exon | 48688573 | 48689204 | 48688573 | ID=MsG0380014030.01.T01:exon:57065;Parent=MsG0380014030.01.T01 |
| Chr3 | exon | 48689419 | 48689650 | 48689419 | ID=MsG0380014030.01.T01:exon:57064;Parent=MsG0380014030.01.T01 |
| Chr3 | CDS | 48689419 | 48689650 | 48689419 | ID=MsG0380014030.01.T01:cds;Parent=MsG0380014030.01.T01 |
| Chr3 | CDS | 48688573 | 48689204 | 48688573 | ID=MsG0380014030.01.T01:cds;Parent=MsG0380014030.01.T01 |
| Chr3 | mRNA | 48688136 | 48689130 | 48688136 | ID=MsG0380014030.01.T02;Parent=MsG0380014030.01;Name=MsG0380014030.01.T02;_AED=0.50;_eAED=0.55;_QI=0|0|0|1|0|0|2|0|203 |
| Chr3 | exon | 48688136 | 48688246 | 48688136 | ID=MsG0380014030.01.T02:exon:57067;Parent=MsG0380014030.01.T02 |
| Chr3 | exon | 48688630 | 48689130 | 48688630 | ID=MsG0380014030.01.T02:exon:57066;Parent=MsG0380014030.01.T02 |
| Chr3 | CDS | 48688630 | 48689130 | 48688630 | ID=MsG0380014030.01.T02:cds;Parent=MsG0380014030.01.T02 |
| Chr3 | CDS | 48688136 | 48688246 | 48688136 | ID=MsG0380014030.01.T02:cds;Parent=MsG0380014030.01.T02 |
| Chr3 | mRNA | 48688174 | 48689130 | 48688174 | ID=MsG0380014030.01.T03;Parent=MsG0380014030.01;Name=MsG0380014030.01.T03;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0|2|0|176 |
| Chr3 | exon | 48688174 | 48688199 | 48688174 | ID=MsG0380014030.01.T03:exon:57069;Parent=MsG0380014030.01.T03 |
| Chr3 | exon | 48688626 | 48689130 | 48688626 | ID=MsG0380014030.01.T03:exon:57068;Parent=MsG0380014030.01.T03 |
| Chr3 | CDS | 48688626 | 48689130 | 48688626 | ID=MsG0380014030.01.T03:cds;Parent=MsG0380014030.01.T03 |
| Chr3 | CDS | 48688174 | 48688199 | 48688174 | ID=MsG0380014030.01.T03:cds;Parent=MsG0380014030.01.T03 |
| Gene Sequence |
| Protein sequence |
