Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013980.01.T01 | YP_001381723.1 | 96.364 | 55 | 2 | 0 | 1 | 55 | 1 | 55 | 8.47E-27 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013980.01.T01 | P08212 | 92.727 | 55 | 4 | 0 | 1 | 55 | 1 | 55 | 1.44E-28 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013980.01.T01 | A0A4P8F405 | 96.364 | 55 | 2 | 0 | 1 | 55 | 1 | 55 | 4.05e-27 | 102 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048611.01 | MsG0380013980.01 | 0.821277 | 4.398302e-53 | 3.562116e-50 |
| MsG0080048689.01 | MsG0380013980.01 | 0.848824 | 4.791836e-60 | 8.904815e-57 |
| MsG0080048909.01 | MsG0380013980.01 | 0.804533 | 2.064096e-49 | 1.066819e-46 |
| MsG0080049016.01 | MsG0380013980.01 | 0.826368 | 2.818248e-54 | 2.637882e-51 |
| MsG0080049078.01 | MsG0380013980.01 | 0.855040 | 8.236683e-62 | 1.876522e-58 |
| MsG0080049079.01 | MsG0380013980.01 | 0.870076 | 1.916882e-66 | 7.360054e-63 |
| MsG0080049080.01 | MsG0380013980.01 | 0.816106 | 6.560682e-52 | 4.606880e-49 |
| MsG0180000502.01 | MsG0380013980.01 | 0.849080 | 4.068280e-60 | 7.623959e-57 |
| MsG0180002226.01 | MsG0380013980.01 | 0.846461 | 2.141166e-59 | 3.688522e-56 |
| MsG0180002435.01 | MsG0380013980.01 | 0.802448 | 5.583489e-49 | 2.735783e-46 |
| MsG0180003274.01 | MsG0380013980.01 | 0.802044 | 6.760701e-49 | 3.278618e-46 |
| MsG0180003933.01 | MsG0380013980.01 | 0.820590 | 6.330750e-53 | 5.029864e-50 |
| MsG0180003949.01 | MsG0380013980.01 | 0.805519 | 1.283913e-49 | 6.806450e-47 |
| MsG0180004302.01 | MsG0380013980.01 | 0.838555 | 2.683271e-57 | 3.606780e-54 |
| MsG0180004937.01 | MsG0380013980.01 | 0.850947 | 1.220872e-60 | 2.431941e-57 |
| MsG0180004987.01 | MsG0380013980.01 | 0.811799 | 5.844207e-51 | 3.652160e-48 |
| MsG0180005150.01 | MsG0380013980.01 | 0.801253 | 9.825853e-49 | 4.670628e-46 |
| MsG0180005568.01 | MsG0380013980.01 | 0.815457 | 9.155266e-52 | 6.315686e-49 |
| MsG0280010625.01 | MsG0380013980.01 | 0.806897 | 6.580670e-50 | 3.614097e-47 |
| MsG0380012443.01 | MsG0380013980.01 | 0.801444 | 8.978177e-49 | 4.288292e-46 |
| MsG0380013889.01 | MsG0380013980.01 | 0.856039 | 4.210610e-62 | 9.917330e-59 |
| MsG0380013915.01 | MsG0380013980.01 | 0.805187 | 1.506459e-49 | 7.918785e-47 |
| MsG0380013917.01 | MsG0380013980.01 | 0.843284 | 1.540565e-58 | 2.398800e-55 |
| MsG0380013918.01 | MsG0380013980.01 | 0.845368 | 4.241219e-59 | 7.051764e-56 |
| MsG0380013919.01 | MsG0380013980.01 | 0.844313 | 8.168998e-59 | 1.313582e-55 |
| MsG0380013927.01 | MsG0380013980.01 | 0.856590 | 2.902063e-62 | 6.962136e-59 |
| MsG0380013930.01 | MsG0380013980.01 | 0.833788 | 4.361718e-56 | 5.076190e-53 |
| MsG0380013931.01 | MsG0380013980.01 | 0.834644 | 2.659739e-56 | 3.175811e-53 |
| MsG0380013932.01 | MsG0380013980.01 | 0.911847 | 3.824887e-83 | 8.359630e-79 |
| MsG0380013939.01 | MsG0380013980.01 | 0.868462 | 6.415758e-66 | 2.322648e-62 |
| MsG0380013947.01 | MsG0380013980.01 | 0.813774 | 2.159468e-51 | 1.423067e-48 |
| MsG0380013949.01 | MsG0380013980.01 | 0.838376 | 2.983681e-57 | 3.988760e-54 |
| MsG0380013950.01 | MsG0380013980.01 | 0.838561 | 2.672645e-57 | 3.593171e-54 |
| MsG0380013952.01 | MsG0380013980.01 | 0.828104 | 1.082176e-54 | 1.065255e-51 |
| MsG0380013955.01 | MsG0380013980.01 | 0.860134 | 2.552937e-63 | 6.906615e-60 |
| MsG0380013958.01 | MsG0380013980.01 | 0.891786 | 2.890882e-74 | 2.571037e-70 |
| MsG0380013963.01 | MsG0380013980.01 | 0.829238 | 5.756634e-55 | 5.857727e-52 |
| MsG0380013964.01 | MsG0380013980.01 | 0.861462 | 1.009062e-63 | 2.857678e-60 |
| MsG0380013965.01 | MsG0380013980.01 | 0.856575 | 2.933159e-62 | 7.033263e-59 |
| MsG0380013969.01 | MsG0380013980.01 | 0.827904 | 1.209272e-54 | 1.183339e-51 |
| MsG0380013970.01 | MsG0380013980.01 | 0.848819 | 4.806666e-60 | 8.930959e-57 |
| MsG0380013972.01 | MsG0380013980.01 | 0.822130 | 2.793122e-53 | 2.317381e-50 |
| MsG0380013976.01 | MsG0380013980.01 | 0.834962 | 2.212075e-56 | 2.666922e-53 |
| MsG0380013978.01 | MsG0380013980.01 | 0.843764 | 1.146252e-58 | 1.811784e-55 |
| MsG0380013979.01 | MsG0380013980.01 | 0.854633 | 1.081187e-61 | 2.430092e-58 |
| MsG0380013980.01 | MsG0380013981.01 | 0.855162 | 7.591171e-62 | 1.736406e-58 |
| MsG0380013980.01 | MsG0380013983.01 | 0.841686 | 4.087594e-58 | 6.052127e-55 |
| MsG0380013980.01 | MsG0380013988.01 | 0.827258 | 1.728055e-54 | 1.659639e-51 |
| MsG0380013980.01 | MsG0380013992.01 | 0.822415 | 2.398711e-53 | 2.006467e-50 |
| MsG0380013980.01 | MsG0380013993.01 | 0.817576 | 3.070075e-52 | 2.244195e-49 |
| MsG0380013980.01 | MsG0380013995.01 | 0.861525 | 9.649179e-64 | 2.738627e-60 |
| MsG0380013980.01 | MsG0380013996.01 | 0.840954 | 6.368427e-58 | 9.217499e-55 |
| MsG0380013980.01 | MsG0380014007.01 | 0.834305 | 3.237028e-56 | 3.826301e-53 |
| MsG0380013980.01 | MsG0380014009.01 | 0.845646 | 3.567600e-59 | 5.985702e-56 |
| MsG0380013980.01 | MsG0380014010.01 | 0.809799 | 1.582557e-50 | 9.381342e-48 |
| MsG0380013980.01 | MsG0380014012.01 | 0.852453 | 4.570257e-61 | 9.553961e-58 |
| MsG0380013980.01 | MsG0380014013.01 | 0.861386 | 1.064294e-63 | 3.006505e-60 |
| MsG0380013980.01 | MsG0380014022.01 | 0.869584 | 2.776223e-66 | 1.047336e-62 |
| MsG0380013980.01 | MsG0380014028.01 | 0.814858 | 1.243482e-51 | 8.438538e-49 |
| MsG0380013980.01 | MsG0380014030.01 | 0.858335 | 8.841872e-63 | 2.248756e-59 |
| MsG0380013980.01 | MsG0380014034.01 | 0.839555 | 1.477701e-57 | 2.047773e-54 |
| MsG0380013980.01 | MsG0380014035.01 | 0.860047 | 2.711050e-63 | 7.312978e-60 |
| MsG0380013980.01 | MsG0380014036.01 | 0.889881 | 1.628268e-73 | 1.337791e-69 |
| MsG0380013980.01 | MsG0380014037.01 | 0.880745 | 4.260778e-70 | 2.430899e-66 |
| MsG0380013980.01 | MsG0380014038.01 | 0.850599 | 1.529645e-60 | 3.012058e-57 |
| MsG0380013980.01 | MsG0380014041.01 | 0.851005 | 1.175859e-60 | 2.346664e-57 |
| MsG0380013980.01 | MsG0380014042.01 | 0.807808 | 4.217872e-50 | 2.371998e-47 |
| MsG0380013980.01 | MsG0380014048.01 | 0.873187 | 1.785995e-67 | 7.681012e-64 |
| MsG0380013980.01 | MsG0380014050.01 | 0.834461 | 2.958271e-56 | 3.513249e-53 |
| MsG0380013980.01 | MsG0380014051.01 | 0.806647 | 7.430651e-50 | 4.054512e-47 |
| MsG0380013980.01 | MsG0380014052.01 | 0.812964 | 3.252753e-51 | 2.096936e-48 |
| MsG0380013980.01 | MsG0380014053.01 | 0.829865 | 4.053062e-55 | 4.200816e-52 |
| MsG0380013980.01 | MsG0380014055.01 | 0.846551 | 2.022994e-59 | 3.494789e-56 |
| MsG0380013980.01 | MsG0380014056.01 | 0.820747 | 5.825085e-53 | 4.648712e-50 |
| MsG0380013980.01 | MsG0380015898.01 | 0.803408 | 3.536952e-49 | 1.775995e-46 |
| MsG0380013980.01 | MsG0380016723.01 | 0.843386 | 1.447089e-58 | 2.260602e-55 |
| MsG0380013980.01 | MsG0380016751.01 | 0.815437 | 9.248497e-52 | 6.376339e-49 |
| MsG0380013980.01 | MsG0380016762.01 | 0.800318 | 1.524669e-48 | 7.077904e-46 |
| MsG0380013980.01 | MsG0380017006.01 | 0.853180 | 2.833090e-61 | 6.068513e-58 |
| MsG0380013980.01 | MsG0480018089.01 | 0.843531 | 1.323050e-58 | 2.076038e-55 |
| MsG0380013980.01 | MsG0480018844.01 | 0.800937 | 1.139997e-48 | 5.375980e-46 |
| MsG0380013980.01 | MsG0480018983.01 | 0.820576 | 6.378123e-53 | 5.065762e-50 |
| MsG0380013980.01 | MsG0480020049.01 | 0.809955 | 1.465323e-50 | 8.721881e-48 |
| MsG0380013980.01 | MsG0480021420.01 | 0.820973 | 5.167873e-53 | 4.150692e-50 |
| MsG0380013980.01 | MsG0480021915.01 | 0.812039 | 5.179868e-51 | 3.257907e-48 |
| MsG0380013980.01 | MsG0480022300.01 | 0.842011 | 3.353860e-58 | 5.017123e-55 |
| MsG0380013980.01 | MsG0480022804.01 | 0.810317 | 1.224109e-50 | 7.355037e-48 |
| MsG0380013980.01 | MsG0480023006.01 | 0.823753 | 1.169084e-53 | 1.015742e-50 |
| MsG0380013980.01 | MsG0480023371.01 | 0.833039 | 6.704643e-56 | 7.630088e-53 |
| MsG0380013980.01 | MsG0480023505.01 | 0.847857 | 8.869216e-60 | 1.597597e-56 |
| MsG0380013980.01 | MsG0480023708.01 | 0.825920 | 3.602137e-54 | 3.328837e-51 |
| MsG0380013980.01 | MsG0480023850.01 | 0.820026 | 8.524705e-53 | 6.669101e-50 |
| MsG0380013980.01 | MsG0480023881.01 | 0.804744 | 1.865159e-49 | 9.693766e-47 |
| MsG0380013980.01 | MsG0580026430.01 | 0.810406 | 1.170939e-50 | 7.052009e-48 |
| MsG0380013980.01 | MsG0580027098.01 | 0.817282 | 3.575096e-52 | 2.592379e-49 |
| MsG0380013980.01 | MsG0580027099.01 | 0.819560 | 1.089355e-52 | 8.411548e-50 |
| MsG0380013980.01 | MsG0580027254.01 | 0.832614 | 8.549590e-56 | 9.606256e-53 |
| MsG0380013980.01 | MsG0580028230.01 | 0.816075 | 6.665452e-52 | 4.676618e-49 |
| MsG0380013980.01 | MsG0580028231.01 | 0.816412 | 5.605819e-52 | 3.969243e-49 |
| MsG0380013980.01 | MsG0580028853.01 | 0.863580 | 2.248656e-64 | 6.850234e-61 |
| MsG0380013980.01 | MsG0580029706.01 | 0.824938 | 6.153048e-54 | 5.529448e-51 |
| MsG0380013980.01 | MsG0580029820.01 | 0.812642 | 3.825019e-51 | 2.445145e-48 |
| MsG0380013980.01 | MsG0680032339.01 | 0.829651 | 4.568188e-55 | 4.704839e-52 |
| MsG0380013980.01 | MsG0680033224.01 | 0.815815 | 7.619371e-52 | 5.307710e-49 |
| MsG0380013980.01 | MsG0680033966.01 | 0.862748 | 4.069311e-64 | 1.204797e-60 |
| MsG0380013980.01 | MsG0680034724.01 | 0.809893 | 1.510322e-50 | 8.974818e-48 |
| MsG0380013980.01 | MsG0780036925.01 | 0.803432 | 3.496772e-49 | 1.756905e-46 |
| MsG0380013980.01 | MsG0780037705.01 | 0.813016 | 3.167591e-51 | 2.045014e-48 |
| MsG0380013980.01 | MsG0780037915.01 | 0.808309 | 3.299463e-50 | 1.880208e-47 |
| MsG0380013980.01 | MsG0780038140.01 | 0.813915 | 2.009817e-51 | 1.329537e-48 |
| MsG0380013980.01 | MsG0780039508.01 | 0.803212 | 3.881955e-49 | 1.939477e-46 |
| MsG0380013980.01 | MsG0780039859.01 | 0.822769 | 1.984028e-53 | 1.676434e-50 |
| MsG0380013980.01 | MsG0780040314.01 | 0.805157 | 1.528546e-49 | 8.028744e-47 |
| MsG0380013980.01 | MsG0780040315.01 | 0.820934 | 5.275556e-53 | 4.232390e-50 |
| MsG0380013980.01 | MsG0780040316.01 | 0.844179 | 8.872566e-59 | 1.420899e-55 |
| MsG0380013980.01 | MsG0780040317.01 | 0.856861 | 2.416268e-62 | 5.847356e-59 |
| MsG0380013980.01 | MsG0780040350.01 | 0.804889 | 1.738964e-49 | 9.072206e-47 |
| MsG0380013980.01 | MsG0780040644.01 | 0.803903 | 2.791228e-49 | 1.419599e-46 |
| MsG0380013980.01 | MsG0780041022.01 | 0.814173 | 1.763018e-51 | 1.174471e-48 |
| MsG0380013980.01 | MsG0780041615.01 | 0.820700 | 5.973135e-53 | 4.760488e-50 |
| MsG0380013980.01 | MsG0780041618.01 | 0.808058 | 3.731933e-50 | 2.112536e-47 |
| MsG0380013980.01 | MsG0780041768.01 | 0.815560 | 8.684800e-52 | 6.007788e-49 |
| MsG0380013980.01 | MsG0780041792.01 | 0.831758 | 1.391857e-55 | 1.525037e-52 |
| MsG0380013980.01 | MsG0880042006.01 | 0.817678 | 2.911226e-52 | 2.134102e-49 |
| MsG0380013980.01 | MsG0880042021.01 | 0.817614 | 3.010548e-52 | 2.202970e-49 |
| MsG0380013980.01 | MsG0880042921.01 | 0.805221 | 1.482463e-49 | 7.799140e-47 |
| MsG0380013980.01 | MsG0880043032.01 | 0.805245 | 1.465191e-49 | 7.713076e-47 |
| MsG0380013980.01 | MsG0880043541.01 | 0.864479 | 1.180980e-64 | 3.713105e-61 |
| MsG0380013980.01 | MsG0880044440.01 | 0.854117 | 1.523456e-61 | 3.367224e-58 |
| MsG0380013980.01 | MsG0880045261.01 | 0.828626 | 8.095611e-55 | 8.091094e-52 |
| MsG0380013980.01 | MsG0880045283.01 | 0.878277 | 3.199786e-69 | 1.660625e-65 |
| MsG0380013980.01 | MsG0880045412.01 | 0.821409 | 4.101071e-53 | 3.333645e-50 |
| MsG0380013980.01 | MsG0880046288.01 | 0.831027 | 2.106290e-55 | 2.257919e-52 |
| MsG0380013980.01 | MsG0880046456.01 | 0.808665 | 2.769359e-50 | 1.592828e-47 |
| MsG0380013980.01 | MsG0880046856.01 | 0.823641 | 1.241341e-53 | 1.075049e-50 |
| MsG0380013980.01 | MsG0880047107.01 | 0.808564 | 2.910434e-50 | 1.669594e-47 |
| MsG0380013980.01 | MsG0880047605.01 | 0.803261 | 3.792539e-49 | 1.897154e-46 |
| MsG0280007026.01 | MsG0380013980.01 | 0.805783 | 1.130082e-49 | 6.032106e-47 |
| MsG0280007041.01 | MsG0380013980.01 | 0.874043 | 9.189378e-68 | 4.076072e-64 |
| MsG0280007042.01 | MsG0380013980.01 | 0.887956 | 9.043195e-73 | 6.867684e-69 |
| MsG0280007600.01 | MsG0380013980.01 | 0.852753 | 3.754684e-61 | 7.925511e-58 |
| MsG0280007655.01 | MsG0380013980.01 | 0.802929 | 4.441881e-49 | 2.203233e-46 |
| MsG0280008233.01 | MsG0380013980.01 | 0.822959 | 1.792054e-53 | 1.522306e-50 |
| MsG0280008966.01 | MsG0380013980.01 | 0.801118 | 1.047140e-48 | 4.960669e-46 |
| MsG0280010137.01 | MsG0380013980.01 | 0.820627 | 6.205582e-53 | 4.935538e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013980.01.T01 | MTR_4g051097 | 96.364 | 55 | 2 | 0 | 1 | 55 | 1 | 55 | 1.03e-30 | 102 |
| MsG0380013980.01.T01 | MTR_0002s0540 | 95.745 | 47 | 2 | 0 | 1 | 47 | 1 | 47 | 9.91e-25 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013980.01.T01 | ATCG00140 | 90.909 | 55 | 5 | 0 | 1 | 55 | 1 | 55 | 1.44e-28 | 97.4 |
Find 25 sgRNAs with CRISPR-Local
Find 27 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAAGCTTTAACTATTTA+TGG | 0.037973 | 3:+48557336 | MsG0380013980.01.T02:CDS |
| CGGAAGCAGAGGACAAAATA+AGG | 0.270738 | 3:+48557287 | MsG0380013980.01.T01:CDS |
| GCCGTCGGGCTTGCTTCTAT+TGG | 0.311843 | 3:+48557205 | MsG0380013980.01.T01:CDS |
| GCTGCTTCTGTTATCGCTGC+TGG | 0.315135 | 3:+48557178 | MsG0380013980.01.T01:CDS |
| TGGAAGCTTTAACTATTTAT+GGG | 0.316470 | 3:+48557337 | MsG0380013980.01.T02:CDS |
| GCTGCAGGGCAAGCTGTAGA+AGG | 0.363265 | 3:+48557250 | MsG0380013980.01.T01:CDS |
| GCTTCTATTGGACCTGGAGT+TGG | 0.416315 | 3:+48557217 | MsG0380013980.01.T01:CDS |
| TCGCTGCTGGGTTGGCCGTC+GGG | 0.427770 | 3:+48557191 | MsG0380013980.01.T01:CDS |
| ATCGCTGCTGGGTTGGCCGT+CGG | 0.428270 | 3:+48557190 | MsG0380013980.01.T01:CDS |
| AAAAGATTAAACAAAAGGAT+TGG | 0.459809 | 3:-48557388 | None:intergenic |
| AGCTTTAACTATTTATGGGC+TGG | 0.460263 | 3:+48557341 | MsG0380013980.01.T02:CDS |
| CTGCTTCTGTTATCGCTGCT+GGG | 0.461552 | 3:+48557179 | MsG0380013980.01.T01:CDS |
| GGAAGCAGAGGACAAAATAA+GGG | 0.473459 | 3:+48557288 | MsG0380013980.01.T01:CDS |
| AGAAGGGATTGCGCGACAAC+CGG | 0.475077 | 3:+48557267 | MsG0380013980.01.T01:CDS |
| GGGCTTGCTTCTATTGGACC+TGG | 0.481695 | 3:+48557211 | MsG0380013980.01.T01:CDS |
| GTTGGTCAAGGTACAGCTGC+AGG | 0.497139 | 3:+48557235 | MsG0380013980.01.T01:CDS |
| TTCTGTTATCGCTGCTGGGT+TGG | 0.514112 | 3:+48557183 | MsG0380013980.01.T01:CDS |
| ATTGGACCTGGAGTTGGTCA+AGG | 0.543278 | 3:+48557223 | MsG0380013980.01.T01:CDS |
| TGCGCGACAACCGGAAGCAG+AGG | 0.554171 | 3:+48557276 | MsG0380013980.01.T01:CDS |
| CTGCAGGGCAAGCTGTAGAA+GGG | 0.582070 | 3:+48557251 | MsG0380013980.01.T01:CDS |
| GCTGTACCTTGACCAACTCC+AGG | 0.593501 | 3:-48557229 | None:intergenic |
| TCCAATAGAAGCAAGCCCGA+CGG | 0.638086 | 3:-48557206 | None:intergenic |
| ACAGAAGCAGCAGAAATCAG+TGG | 0.640161 | 3:-48557166 | None:intergenic |
| TTGGTCAAGGTACAGCTGCA+GGG | 0.643472 | 3:+48557236 | MsG0380013980.01.T01:CDS |
| GAAGCAGAGGACAAAATAAG+GGG | 0.658398 | 3:+48557289 | MsG0380013980.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGGAAGCTTTAACTATTTA+TGG | + | Chr3:48557336-48557355 | MsG0380013980.01.T02:CDS | 25.0% |
| !! | TGGAAGCTTTAACTATTTAT+GGG | + | Chr3:48557337-48557356 | MsG0380013980.01.T02:CDS | 25.0% |
| !!! | TTTACTTAGTCTGGCTTTTA+TGG | + | Chr3:48557317-48557336 | MsG0380013980.01.T01:CDS | 30.0% |
| ! | AGCTTTAACTATTTATGGGC+TGG | + | Chr3:48557341-48557360 | MsG0380013980.01.T02:CDS | 35.0% |
| GAAGCAGAGGACAAAATAAG+GGG | + | Chr3:48557289-48557308 | MsG0380013980.01.T01:CDS | 40.0% | |
| GGAAGCAGAGGACAAAATAA+GGG | + | Chr3:48557288-48557307 | MsG0380013980.01.T01:CDS | 40.0% | |
| !! | GGGGTACTTTTTACTTAGTC+TGG | + | Chr3:48557308-48557327 | MsG0380013980.01.T01:CDS | 40.0% |
| !!! | CTTATTTTGTCCTCTGCTTC+CGG | - | Chr3:48557289-48557308 | None:intergenic | 40.0% |
| ACAGAAGCAGCAGAAATCAG+TGG | - | Chr3:48557169-48557188 | None:intergenic | 45.0% | |
| CGGAAGCAGAGGACAAAATA+AGG | + | Chr3:48557287-48557306 | MsG0380013980.01.T01:CDS | 45.0% | |
| CTGCTTCTGTTATCGCTGCT+GGG | + | Chr3:48557179-48557198 | MsG0380013980.01.T01:CDS | 50.0% | |
| GCTTCTATTGGACCTGGAGT+TGG | + | Chr3:48557217-48557236 | MsG0380013980.01.T01:CDS | 50.0% | |
| TCCAATAGAAGCAAGCCCGA+CGG | - | Chr3:48557209-48557228 | None:intergenic | 50.0% | |
| TTCTGTTATCGCTGCTGGGT+TGG | + | Chr3:48557183-48557202 | MsG0380013980.01.T01:CDS | 50.0% | |
| TTGGTCAAGGTACAGCTGCA+GGG | + | Chr3:48557236-48557255 | MsG0380013980.01.T01:CDS | 50.0% | |
| ! | ATTGGACCTGGAGTTGGTCA+AGG | + | Chr3:48557223-48557242 | MsG0380013980.01.T01:CDS | 50.0% |
| AGAAGGGATTGCGCGACAAC+CGG | + | Chr3:48557267-48557286 | MsG0380013980.01.T01:CDS | 55.0% | |
| CTGCAGGGCAAGCTGTAGAA+GGG | + | Chr3:48557251-48557270 | MsG0380013980.01.T01:CDS | 55.0% | |
| GCTGCTTCTGTTATCGCTGC+TGG | + | Chr3:48557178-48557197 | MsG0380013980.01.T01:CDS | 55.0% | |
| GCTGTACCTTGACCAACTCC+AGG | - | Chr3:48557232-48557251 | None:intergenic | 55.0% | |
| GTTGGTCAAGGTACAGCTGC+AGG | + | Chr3:48557235-48557254 | MsG0380013980.01.T01:CDS | 55.0% | |
| ! | GGGCTTGCTTCTATTGGACC+TGG | + | Chr3:48557211-48557230 | MsG0380013980.01.T01:CDS | 55.0% |
| GCTGCAGGGCAAGCTGTAGA+AGG | + | Chr3:48557250-48557269 | MsG0380013980.01.T01:CDS | 60.0% | |
| ! | GCCGTCGGGCTTGCTTCTAT+TGG | + | Chr3:48557205-48557224 | MsG0380013980.01.T01:CDS | 60.0% |
| TGCGCGACAACCGGAAGCAG+AGG | + | Chr3:48557276-48557295 | MsG0380013980.01.T01:CDS | 65.0% | |
| !! | ATCGCTGCTGGGTTGGCCGT+CGG | + | Chr3:48557190-48557209 | MsG0380013980.01.T01:CDS | 65.0% |
| !! | TCGCTGCTGGGTTGGCCGTC+GGG | + | Chr3:48557191-48557210 | MsG0380013980.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48557160 | 48557404 | 48557160 | ID=MsG0380013980.01;Name=MsG0380013980.01 |
| Chr3 | mRNA | 48557160 | 48557348 | 48557160 | ID=MsG0380013980.01.T01;Parent=MsG0380013980.01;Name=MsG0380013980.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|62 |
| Chr3 | exon | 48557160 | 48557348 | 48557160 | ID=MsG0380013980.01.T01:exon:8586;Parent=MsG0380013980.01.T01 |
| Chr3 | CDS | 48557160 | 48557348 | 48557160 | ID=MsG0380013980.01.T01:cds;Parent=MsG0380013980.01.T01 |
| Chr3 | mRNA | 48557336 | 48557404 | 48557336 | ID=MsG0380013980.01.T02;Parent=MsG0380013980.01;Name=MsG0380013980.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|22 |
| Chr3 | exon | 48557336 | 48557404 | 48557336 | ID=MsG0380013980.01.T02:exon:8587;Parent=MsG0380013980.01.T02 |
| Chr3 | CDS | 48557336 | 48557404 | 48557336 | ID=MsG0380013980.01.T02:cds;Parent=MsG0380013980.01.T02 |
| Gene Sequence |
| Protein sequence |
