AlfalfaGEDB | MsG0780038941.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038941.01

KEGG: K00799
GO: GO:0005515
PFAM: PF00043 PF02798

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038941.01.T01	XP_003623211.1	83.628	226	9	1	1	198	1	226	1.47E-129	373

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038941.01.T01	P32110	64.159	226	52	4	1	198	1	225	1.04E-92	273

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038941.01.T01	G7L6I5	83.628	226	9	1	1	198	1	226	7.03e-130	373

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180002272.01	MsG0780038941.01	PPI
MsG0180002273.01	MsG0780038941.01	PPI
MsG0780038923.01	MsG0780038941.01	PPI
MsG0780038924.01	MsG0780038941.01	PPI
MsG0780038925.01	MsG0780038941.01	PPI
MsG0780038930.01	MsG0780038941.01	PPI
MsG0780038936.01	MsG0780038941.01	PPI
MsG0780038937.01	MsG0780038941.01	PPI
MsG0780038941.01	MsG0780038939.01	PPI
MsG0780038941.01	MsG0180002273.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038941.01.T01	MTR_7g065750	83.628	226	9	1	1	198	1	226	1.78e-133	373
MsG0780038941.01.T01	MTR_7g065740	71.239	226	37	1	1	198	1	226	5.37e-110	314
MsG0780038941.01.T01	MTR_7g065720	64.840	219	49	1	1	191	1	219	2.45e-97	282
MsG0780038941.01.T01	MTR_7g065660	62.832	226	55	2	1	198	1	225	3.67e-96	279
MsG0780038941.01.T01	MTR_7g065590	55.357	224	71	2	1	196	1	223	2.19e-82	244
MsG0780038941.01.T01	MTR_7g065640	56.637	226	51	3	1	198	1	207	2.48e-81	241
MsG0780038941.01.T01	MTR_7g065290	58.716	218	63	2	1	191	1	218	9.22e-81	240
MsG0780038941.01.T01	MTR_4g019790	56.637	226	69	3	1	198	1	225	2.34e-80	239
MsG0780038941.01.T01	MTR_7g065600	55.605	223	72	2	1	196	1	223	1.53e-78	234
MsG0780038941.01.T01	MTR_7g065265	57.339	218	66	2	1	191	1	218	1.31e-77	232

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038941.01.T01	AT3G09270	44.144	222	94	5	4	195	2	223	8.40e-55	174
MsG0780038941.01.T01	AT2G29420	39.726	219	101	3	3	192	5	221	3.34e-50	162
MsG0780038941.01.T01	AT2G29450	41.256	223	102	5	3	196	2	224	3.34e-38	131
MsG0780038941.01.T01	AT2G29490	40.865	208	95	4	1	180	1	208	7.26e-38	130
MsG0780038941.01.T01	AT2G29440	37.838	222	110	5	3	196	2	223	3.79e-37	129
MsG0780038941.01.T01	AT2G29480	38.839	224	109	4	1	196	1	224	4.80e-37	129
MsG0780038941.01.T01	AT2G29460	37.946	224	111	4	1	196	1	224	5.87e-36	125
MsG0780038941.01.T01	AT2G29470	38.756	209	99	5	1	180	1	209	6.38e-34	120
MsG0780038941.01.T01	AT1G59670	36.283	226	109	3	3	193	2	227	5.03e-33	118
MsG0780038941.01.T01	AT1G59700	38.571	210	94	4	3	177	2	211	5.26e-32	115

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Find 36 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTGAAGAATCAACT+GGG	0.642194	7:-55576825	MsG0780038941.01.T01:CDS
AAATATTGAAGAATCAACTG+GGG	0.718023	7:-55576824	MsG0780038941.01.T01:CDS
AAGATTTAATAGGGTTGAAA+TGG	0.365583	7:-55576693	MsG0780038941.01.T01:CDS
AATGTATTCAAGAATCACAA+GGG	0.692745	7:+55577176	None:intergenic
AATGTCCGCAAATCAGGAAG+AGG	0.575773	7:-55577385	MsG0780038941.01.T01:CDS
ACCGGAACCTTCTTATGAAC+TGG	0.328607	7:+55577231	None:intergenic
AGCTGAAGAACAAGTTCTTT+GGG	0.341432	7:-55576780	MsG0780038941.01.T01:CDS
AGTATCCAAAGCTTTACAAA+TGG	0.475417	7:-55576657	MsG0780038941.01.T01:CDS
ATACAATCCAGTTCATAAGA+AGG	0.532878	7:-55577238	MsG0780038941.01.T01:CDS
ATCACAAGGGATTCTGATAT+AGG	0.376717	7:+55577189	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTATCCAAAGCTTTACAAA+TGG	-	Chr7:55577273-55577292	MsG0780038941.01.T01:CDS	30.0%
ATACAATCCAGTTCATAAGA+AGG	-	Chr7:55576692-55576711	MsG0780038941.01.T01:CDS	30.0%
CAAATATGTTCAAGAAGACT+TGG	-	Chr7:55576644-55576663	MsG0780038941.01.T01:CDS	30.0%
CAATGTATTCAAGAATCACA+AGG	+	Chr7:55576758-55576777	None:intergenic	30.0%
CCTTGAAATTTGCAAAAAGA+GGG	+	Chr7:55577352-55577371	None:intergenic	30.0%
GATTCTTGAATACATTGATG+AGG	-	Chr7:55576761-55576780	MsG0780038941.01.T01:CDS	30.0%
TATGAACTGGATTGTATTTG+AGG	+	Chr7:55576689-55576708	None:intergenic	30.0%
TTCTCATTGTGAACAAAAAC+CGG	+	Chr7:55576720-55576739	None:intergenic	30.0%
TTGAATACATTGATGAGGTT+TGG	-	Chr7:55576766-55576785	MsG0780038941.01.T01:CDS	30.0%
AAAATGTAGCGATTGCGATT+TGG	+	Chr7:55576923-55576942	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	55576546	55577406	55576546	ID=MsG0780038941.01;Name=MsG0780038941.01
Chr7	mRNA	55576546	55577406	55576546	ID=MsG0780038941.01.T01;Parent=MsG0780038941.01;Name=MsG0780038941.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|0\|0\|1\|1\|1\|2\|0\|198
Chr7	exon	55577170	55577406	55577170	ID=MsG0780038941.01.T01:exon:7795;Parent=MsG0780038941.01.T01
Chr7	exon	55576546	55576905	55576546	ID=MsG0780038941.01.T01:exon:7794;Parent=MsG0780038941.01.T01
Chr7	CDS	55577170	55577406	55577170	ID=MsG0780038941.01.T01:cds;Parent=MsG0780038941.01.T01
Chr7	CDS	55576546	55576905	55576546	ID=MsG0780038941.01.T01:cds;Parent=MsG0780038941.01.T01

Gene Sequence

>MsG0780038941.01.T01

ATGTCCGCAAATCAGGAAGAGGCGAAACTTTTAGGAGCTCTGGGAAGCCCATTTGCTTGCAGGGTACAGATTGCTCTTAAGTGGAAAGGAGTTGAATACAAATATGTTCAAGAAGACTTGGCCAACAAAAGTGATCTTCTCCTCAAATACAATCCAGTTCATAAGAAGGTTCCGGTTTTTGTTCACAATGAGAAACCTATATCAGAATCCCTTGTGATTCTTGAATACATTGATGAGATTGCAACTCCTTCATTGAAAGCTGTTTATGCTTTTAACGATGAGAAAGAGCGCGAGAAAAATATTGAAGAATCAACTGGGGCTCTGCAGATTCTTGAGAATGAGCTGAAGAACAAGTTCTTTGGGGGAGAAGAGATTGGTTTTGTGGATATTGCTGCTGTGTTCATAGCTTTTTGGATCCCTTTGTTTCAAGATTTAATAGGGTTGAAATGGTTCACTGCTGAAAAGTATCCAAAGCTTTACAAATGGAGCCAAGAATTTCTCAACCATCCAATTGTGAAGGAGAATGTGCCTCTTAGAGACCCTCTTTTTGCAAATTTCAAGGCTAGATATGATAGAGCTGTTTCTGCTTCAAAATAG

Protein sequence

>MsG0780038941.01.T01

MSANQEEAKLLGALGSPFACRVQIALKWKGVEYKYVQEDLANKSDLLLKYNPVHKKVPVFVHNEKPISESLVILEYIDEIATPSLKAVYAFNDEKEREKNIEESTGALQILENELKNKFFGGEEIGFVDIAAVFIAFWIPLFQDLIGLKWFTAEKYPKLYKWSQEFLNHPIVKENVPLRDPLFANFKARYDRAVSASK*