Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038941.01.T01 | XP_003623211.1 | 83.628 | 226 | 9 | 1 | 1 | 198 | 1 | 226 | 1.47E-129 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038941.01.T01 | P32110 | 64.159 | 226 | 52 | 4 | 1 | 198 | 1 | 225 | 1.04E-92 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038941.01.T01 | G7L6I5 | 83.628 | 226 | 9 | 1 | 1 | 198 | 1 | 226 | 7.03e-130 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038941.01.T01 | MTR_7g065750 | 83.628 | 226 | 9 | 1 | 1 | 198 | 1 | 226 | 1.78e-133 | 373 |
| MsG0780038941.01.T01 | MTR_7g065740 | 71.239 | 226 | 37 | 1 | 1 | 198 | 1 | 226 | 5.37e-110 | 314 |
| MsG0780038941.01.T01 | MTR_7g065720 | 64.840 | 219 | 49 | 1 | 1 | 191 | 1 | 219 | 2.45e-97 | 282 |
| MsG0780038941.01.T01 | MTR_7g065660 | 62.832 | 226 | 55 | 2 | 1 | 198 | 1 | 225 | 3.67e-96 | 279 |
| MsG0780038941.01.T01 | MTR_7g065590 | 55.357 | 224 | 71 | 2 | 1 | 196 | 1 | 223 | 2.19e-82 | 244 |
| MsG0780038941.01.T01 | MTR_7g065640 | 56.637 | 226 | 51 | 3 | 1 | 198 | 1 | 207 | 2.48e-81 | 241 |
| MsG0780038941.01.T01 | MTR_7g065290 | 58.716 | 218 | 63 | 2 | 1 | 191 | 1 | 218 | 9.22e-81 | 240 |
| MsG0780038941.01.T01 | MTR_4g019790 | 56.637 | 226 | 69 | 3 | 1 | 198 | 1 | 225 | 2.34e-80 | 239 |
| MsG0780038941.01.T01 | MTR_7g065600 | 55.605 | 223 | 72 | 2 | 1 | 196 | 1 | 223 | 1.53e-78 | 234 |
| MsG0780038941.01.T01 | MTR_7g065265 | 57.339 | 218 | 66 | 2 | 1 | 191 | 1 | 218 | 1.31e-77 | 232 |
| MsG0780038941.01.T01 | MTR_7g065630 | 56.444 | 225 | 67 | 3 | 1 | 198 | 19 | 239 | 2.86e-75 | 226 |
| MsG0780038941.01.T01 | MTR_7g065270 | 55.708 | 219 | 68 | 3 | 1 | 191 | 1 | 218 | 2.17e-74 | 224 |
| MsG0780038941.01.T01 | MTR_4g019780 | 54.206 | 214 | 71 | 3 | 2 | 188 | 3 | 216 | 7.83e-72 | 217 |
| MsG0780038941.01.T01 | MTR_7g065260 | 52.444 | 225 | 80 | 3 | 1 | 198 | 8 | 232 | 1.02e-70 | 214 |
| MsG0780038941.01.T01 | MTR_7g065230 | 54.222 | 225 | 70 | 4 | 1 | 198 | 1 | 219 | 1.51e-69 | 211 |
| MsG0780038941.01.T01 | MTR_7g065710 | 53.623 | 207 | 65 | 3 | 8 | 187 | 5 | 207 | 2.12e-65 | 201 |
| MsG0780038941.01.T01 | MTR_7g065680 | 49.778 | 225 | 82 | 4 | 1 | 198 | 1 | 221 | 3.90e-60 | 187 |
| MsG0780038941.01.T01 | MTR_7g065700 | 50.467 | 214 | 75 | 3 | 1 | 187 | 1 | 210 | 9.62e-58 | 181 |
| MsG0780038941.01.T01 | MTR_1g090150 | 39.906 | 213 | 100 | 4 | 5 | 189 | 1 | 213 | 9.45e-44 | 145 |
| MsG0780038941.01.T01 | MTR_3g099757 | 41.818 | 220 | 101 | 5 | 5 | 197 | 3 | 222 | 4.65e-43 | 144 |
| MsG0780038941.01.T01 | MTR_8g087410 | 38.667 | 225 | 110 | 5 | 1 | 198 | 1 | 224 | 2.35e-41 | 139 |
| MsG0780038941.01.T01 | MTR_8g087425 | 38.028 | 213 | 105 | 3 | 4 | 189 | 2 | 214 | 1.72e-40 | 137 |
| MsG0780038941.01.T01 | MTR_1g115195 | 37.089 | 213 | 104 | 2 | 7 | 189 | 3 | 215 | 2.10e-40 | 137 |
| MsG0780038941.01.T01 | MTR_6g080440 | 38.009 | 221 | 108 | 5 | 7 | 198 | 3 | 223 | 2.85e-40 | 137 |
| MsG0780038941.01.T01 | MTR_5g040430 | 37.387 | 222 | 104 | 3 | 1 | 188 | 1 | 221 | 1.97e-38 | 132 |
| MsG0780038941.01.T01 | MTR_1g090070 | 35.747 | 221 | 112 | 4 | 7 | 197 | 9 | 229 | 9.19e-38 | 130 |
| MsG0780038941.01.T01 | MTR_5g037380 | 38.249 | 217 | 97 | 4 | 1 | 182 | 1 | 215 | 2.68e-36 | 127 |
| MsG0780038941.01.T01 | MTR_4g059730 | 35.377 | 212 | 108 | 2 | 6 | 188 | 3 | 214 | 4.74e-36 | 125 |
| MsG0780038941.01.T01 | MTR_1g090060 | 38.942 | 208 | 96 | 6 | 7 | 184 | 3 | 209 | 1.02e-35 | 125 |
| MsG0780038941.01.T01 | MTR_1g090090 | 36.036 | 222 | 111 | 5 | 7 | 197 | 3 | 224 | 1.82e-35 | 124 |
| MsG0780038941.01.T01 | MTR_1g090100 | 36.408 | 206 | 102 | 4 | 8 | 184 | 3 | 208 | 1.82e-30 | 111 |
| MsG0780038941.01.T01 | MTR_2g070130 | 35.407 | 209 | 97 | 7 | 6 | 182 | 3 | 205 | 5.80e-30 | 110 |
| MsG0780038941.01.T01 | MTR_2g070150 | 34.975 | 203 | 102 | 5 | 6 | 180 | 3 | 203 | 6.08e-30 | 109 |
| MsG0780038941.01.T01 | MTR_8g061950 | 32.420 | 219 | 113 | 3 | 5 | 188 | 3 | 221 | 1.11e-28 | 107 |
| MsG0780038941.01.T01 | MTR_8g056940 | 34.703 | 219 | 106 | 6 | 6 | 191 | 3 | 217 | 1.05e-27 | 104 |
| MsG0780038941.01.T01 | MTR_2g070120 | 34.928 | 209 | 98 | 6 | 6 | 182 | 3 | 205 | 1.33e-27 | 104 |
| MsG0780038941.01.T01 | MTR_2g070140 | 33.854 | 192 | 97 | 5 | 21 | 184 | 2 | 191 | 2.04e-27 | 103 |
| MsG0780038941.01.T01 | MTR_2g070180 | 34.171 | 199 | 101 | 5 | 10 | 180 | 7 | 203 | 3.52e-27 | 103 |
| MsG0780038941.01.T01 | MTR_3g467420 | 35.071 | 211 | 106 | 6 | 10 | 192 | 12 | 219 | 7.90e-27 | 102 |
| MsG0780038941.01.T01 | MTR_3g467430 | 35.644 | 202 | 100 | 5 | 4 | 177 | 6 | 205 | 8.69e-27 | 102 |
| MsG0780038941.01.T01 | MTR_2g070210 | 32.692 | 208 | 108 | 6 | 6 | 183 | 3 | 208 | 2.59e-26 | 100 |
| MsG0780038941.01.T01 | MTR_4g124130 | 40.206 | 194 | 81 | 8 | 5 | 167 | 2 | 191 | 5.92e-26 | 99.8 |
| MsG0780038941.01.T01 | MTR_2g070200 | 34.375 | 192 | 95 | 4 | 6 | 168 | 3 | 192 | 1.22e-25 | 99.0 |
| MsG0780038941.01.T01 | MTR_2g070060 | 33.636 | 220 | 109 | 6 | 7 | 198 | 4 | 214 | 1.50e-25 | 99.0 |
| MsG0780038941.01.T01 | MTR_5g076900 | 36.224 | 196 | 91 | 7 | 15 | 181 | 14 | 204 | 1.92e-25 | 98.6 |
| MsG0780038941.01.T01 | MTR_2g070070 | 32.338 | 201 | 102 | 5 | 7 | 177 | 4 | 200 | 4.57e-24 | 95.1 |
| MsG0780038941.01.T01 | MTR_0186s0030 | 57.333 | 75 | 32 | 0 | 6 | 80 | 3 | 77 | 7.40e-23 | 89.7 |
| MsG0780038941.01.T01 | MTR_2g070110 | 33.484 | 221 | 107 | 7 | 7 | 198 | 4 | 213 | 5.81e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038941.01.T01 | AT3G09270 | 44.144 | 222 | 94 | 5 | 4 | 195 | 2 | 223 | 8.40e-55 | 174 |
| MsG0780038941.01.T01 | AT2G29420 | 39.726 | 219 | 101 | 3 | 3 | 192 | 5 | 221 | 3.34e-50 | 162 |
| MsG0780038941.01.T01 | AT2G29450 | 41.256 | 223 | 102 | 5 | 3 | 196 | 2 | 224 | 3.34e-38 | 131 |
| MsG0780038941.01.T01 | AT2G29490 | 40.865 | 208 | 95 | 4 | 1 | 180 | 1 | 208 | 7.26e-38 | 130 |
| MsG0780038941.01.T01 | AT2G29440 | 37.838 | 222 | 110 | 5 | 3 | 196 | 2 | 223 | 3.79e-37 | 129 |
| MsG0780038941.01.T01 | AT2G29480 | 38.839 | 224 | 109 | 4 | 1 | 196 | 1 | 224 | 4.80e-37 | 129 |
| MsG0780038941.01.T01 | AT2G29460 | 37.946 | 224 | 111 | 4 | 1 | 196 | 1 | 224 | 5.87e-36 | 125 |
| MsG0780038941.01.T01 | AT2G29470 | 38.756 | 209 | 99 | 5 | 1 | 180 | 1 | 209 | 6.38e-34 | 120 |
| MsG0780038941.01.T01 | AT1G59670 | 36.283 | 226 | 109 | 3 | 3 | 193 | 2 | 227 | 5.03e-33 | 118 |
| MsG0780038941.01.T01 | AT1G59700 | 38.571 | 210 | 94 | 4 | 3 | 177 | 2 | 211 | 5.26e-32 | 115 |
| MsG0780038941.01.T01 | AT1G10370 | 35.266 | 207 | 100 | 4 | 5 | 177 | 3 | 209 | 7.03e-32 | 115 |
| MsG0780038941.01.T01 | AT1G27130 | 32.143 | 224 | 117 | 4 | 3 | 191 | 2 | 225 | 8.59e-31 | 112 |
| MsG0780038941.01.T01 | AT1G69920 | 34.597 | 211 | 103 | 5 | 2 | 177 | 29 | 239 | 3.72e-30 | 111 |
| MsG0780038941.01.T01 | AT1G53680 | 35.514 | 214 | 104 | 5 | 1 | 183 | 1 | 211 | 6.77e-30 | 110 |
| MsG0780038941.01.T01 | AT1G69930 | 32.301 | 226 | 120 | 4 | 2 | 194 | 7 | 232 | 7.07e-30 | 110 |
| MsG0780038941.01.T01 | AT1G78380 | 36.098 | 205 | 95 | 7 | 7 | 181 | 4 | 202 | 1.14e-29 | 109 |
| MsG0780038941.01.T01 | AT1G78320 | 34.286 | 210 | 106 | 5 | 5 | 185 | 2 | 208 | 2.60e-29 | 108 |
| MsG0780038941.01.T01 | AT1G78370 | 32.227 | 211 | 112 | 5 | 10 | 192 | 7 | 214 | 2.48e-28 | 105 |
| MsG0780038941.01.T01 | AT1G10360 | 33.816 | 207 | 101 | 7 | 6 | 177 | 4 | 209 | 4.55e-28 | 105 |
| MsG0780038941.01.T01 | AT1G78340 | 39.752 | 161 | 69 | 3 | 6 | 138 | 3 | 163 | 5.31e-28 | 105 |
| MsG0780038941.01.T01 | AT1G27140 | 32.227 | 211 | 107 | 4 | 3 | 177 | 2 | 212 | 6.45e-28 | 105 |
| MsG0780038941.01.T01 | AT5G62480 | 31.081 | 222 | 117 | 3 | 10 | 195 | 11 | 232 | 1.27e-27 | 104 |
| MsG0780038941.01.T01 | AT1G78320 | 35.870 | 184 | 111 | 5 | 5 | 185 | 2 | 181 | 3.57e-27 | 102 |
| MsG0780038941.01.T01 | AT1G74590 | 32.039 | 206 | 108 | 3 | 1 | 174 | 1 | 206 | 2.71e-26 | 101 |
| MsG0780038941.01.T01 | AT1G17180 | 35.821 | 201 | 97 | 6 | 6 | 177 | 3 | 200 | 6.48e-26 | 99.8 |
| MsG0780038941.01.T01 | AT1G17170 | 34.673 | 199 | 101 | 5 | 6 | 177 | 3 | 199 | 2.14e-25 | 98.6 |
| MsG0780038941.01.T01 | AT3G43800 | 32.547 | 212 | 105 | 8 | 4 | 182 | 2 | 208 | 1.02e-23 | 94.4 |
| MsG0780038941.01.T01 | AT1G78360 | 34.328 | 201 | 99 | 6 | 7 | 177 | 4 | 201 | 1.53e-23 | 93.6 |
| MsG0780038941.01.T01 | AT5G62480 | 31.579 | 190 | 118 | 3 | 10 | 188 | 11 | 199 | 3.04e-23 | 92.8 |
| MsG0780038941.01.T01 | AT5G62480 | 31.053 | 190 | 118 | 4 | 10 | 188 | 11 | 198 | 3.89e-21 | 87.0 |
| MsG0780038941.01.T01 | AT1G17190 | 32.984 | 191 | 92 | 5 | 10 | 169 | 8 | 193 | 2.93e-20 | 85.1 |
Find 36 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAAGCCCATTTGCTTGC+AGG | 0.244780 | 7:-55577344 | MsG0780038941.01.T01:CDS |
| CCTTTGTTTCAAGATTTAAT+AGG | 0.285103 | 7:-55576703 | MsG0780038941.01.T01:CDS |
| GAGCTGAAGAACAAGTTCTT+TGG | 0.292601 | 7:-55576781 | MsG0780038941.01.T01:CDS |
| ACCGGAACCTTCTTATGAAC+TGG | 0.328607 | 7:+55577231 | None:intergenic |
| GCAATCAATGTCCGCAAATC+AGG | 0.336594 | 7:-55577391 | None:intergenic |
| TGGCTCCATTTGTAAAGCTT+TGG | 0.339930 | 7:+55576652 | None:intergenic |
| AGCTGAAGAACAAGTTCTTT+GGG | 0.341432 | 7:-55576780 | MsG0780038941.01.T01:CDS |
| TTGGATGGTTGAGAAATTCT+TGG | 0.345416 | 7:+55576632 | None:intergenic |
| TATGAACTGGATTGTATTTG+AGG | 0.352045 | 7:+55577244 | None:intergenic |
| CTTTGTTTCAAGATTTAATA+GGG | 0.353287 | 7:-55576702 | MsG0780038941.01.T01:CDS |
| AAGATTTAATAGGGTTGAAA+TGG | 0.365583 | 7:-55576693 | MsG0780038941.01.T01:CDS |
| ATCACAAGGGATTCTGATAT+AGG | 0.376717 | 7:+55577189 | None:intergenic |
| GGCACATTCTCCTTCACAAT+TGG | 0.384087 | 7:+55576613 | None:intergenic |
| TCCAGTTCATAAGAAGGTTC+CGG | 0.393726 | 7:-55577232 | MsG0780038941.01.T01:CDS |
| ATCTGTACCCTGCAAGCAAA+TGG | 0.394233 | 7:+55577336 | None:intergenic |
| TTTCGCCTCTTCCTGATTTG+CGG | 0.414011 | 7:+55577380 | None:intergenic |
| GCATAAACAGCTTTCAATGA+AGG | 0.463434 | 7:+55576874 | None:intergenic |
| GGGAAGCCCATTTGCTTGCA+GGG | 0.469066 | 7:-55577343 | MsG0780038941.01.T01:CDS |
| AGTATCCAAAGCTTTACAAA+TGG | 0.475417 | 7:-55576657 | MsG0780038941.01.T01:CDS |
| CAAATATGTTCAAGAAGACT+TGG | 0.481910 | 7:-55577286 | MsG0780038941.01.T01:CDS |
| CATTCTCCTTCACAATTGGA+TGG | 0.491109 | 7:+55576617 | None:intergenic |
| GGGTACAGATTGCTCTTAAG+TGG | 0.499386 | 7:-55577323 | MsG0780038941.01.T01:CDS |
| CCTATTAAATCTTGAAACAA+AGG | 0.519986 | 7:+55576703 | None:intergenic |
| CTATTAAATCTTGAAACAAA+GGG | 0.523551 | 7:+55576704 | None:intergenic |
| TCTGTACCCTGCAAGCAAAT+GGG | 0.529543 | 7:+55577337 | None:intergenic |
| ATACAATCCAGTTCATAAGA+AGG | 0.532878 | 7:-55577238 | MsG0780038941.01.T01:CDS |
| AATGTCCGCAAATCAGGAAG+AGG | 0.575773 | 7:-55577385 | MsG0780038941.01.T01:CDS |
| TCTCAACCATCCAATTGTGA+AGG | 0.577628 | 7:-55576623 | MsG0780038941.01.T01:CDS |
| CAGATTGCTCTTAAGTGGAA+AGG | 0.578095 | 7:-55577318 | MsG0780038941.01.T01:CDS |
| CAATGTATTCAAGAATCACA+AGG | 0.596729 | 7:+55577175 | None:intergenic |
| GCTGAAGAACAAGTTCTTTG+GGG | 0.624895 | 7:-55576779 | MsG0780038941.01.T01:CDS |
| AAAATATTGAAGAATCAACT+GGG | 0.642194 | 7:-55576825 | MsG0780038941.01.T01:CDS |
| CTGAAGAACAAGTTCTTTGG+GGG | 0.643585 | 7:-55576778 | MsG0780038941.01.T01:CDS |
| GATTCTTGAATACATTGATG+AGG | 0.657297 | 7:-55577169 | MsG0780038941.01.T01:intron |
| AATGTATTCAAGAATCACAA+GGG | 0.692745 | 7:+55577176 | None:intergenic |
| AAATATTGAAGAATCAACTG+GGG | 0.718023 | 7:-55576824 | MsG0780038941.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATTGAAGAATCAAC+TGG | - | Chr7:55577104-55577123 | MsG0780038941.01.T01:intron | 20.0% |
| !! | AAAATATTGAAGAATCAACT+GGG | - | Chr7:55577105-55577124 | MsG0780038941.01.T01:intron | 20.0% |
| !! | CTATTAAATCTTGAAACAAA+GGG | + | Chr7:55577229-55577248 | None:intergenic | 20.0% |
| !!! | CTTTGTTTCAAGATTTAATA+GGG | - | Chr7:55577228-55577247 | MsG0780038941.01.T01:CDS | 20.0% |
| ! | AAATATTGAAGAATCAACTG+GGG | - | Chr7:55577106-55577125 | MsG0780038941.01.T01:intron | 25.0% |
| ! | AAGATTTAATAGGGTTGAAA+TGG | - | Chr7:55577237-55577256 | MsG0780038941.01.T01:CDS | 25.0% |
| ! | AATGTATTCAAGAATCACAA+GGG | + | Chr7:55576757-55576776 | None:intergenic | 25.0% |
| ! | CCTATTAAATCTTGAAACAA+AGG | + | Chr7:55577230-55577249 | None:intergenic | 25.0% |
| !! | CCTTTGTTTCAAGATTTAAT+AGG | - | Chr7:55577227-55577246 | MsG0780038941.01.T01:CDS | 25.0% |
| AGTATCCAAAGCTTTACAAA+TGG | - | Chr7:55577273-55577292 | MsG0780038941.01.T01:CDS | 30.0% | |
| ATACAATCCAGTTCATAAGA+AGG | - | Chr7:55576692-55576711 | MsG0780038941.01.T01:CDS | 30.0% | |
| CAAATATGTTCAAGAAGACT+TGG | - | Chr7:55576644-55576663 | MsG0780038941.01.T01:CDS | 30.0% | |
| CAATGTATTCAAGAATCACA+AGG | + | Chr7:55576758-55576777 | None:intergenic | 30.0% | |
| CCTTGAAATTTGCAAAAAGA+GGG | + | Chr7:55577352-55577371 | None:intergenic | 30.0% | |
| GATTCTTGAATACATTGATG+AGG | - | Chr7:55576761-55576780 | MsG0780038941.01.T01:CDS | 30.0% | |
| TATGAACTGGATTGTATTTG+AGG | + | Chr7:55576689-55576708 | None:intergenic | 30.0% | |
| TTCTCATTGTGAACAAAAAC+CGG | + | Chr7:55576720-55576739 | None:intergenic | 30.0% | |
| TTGAATACATTGATGAGGTT+TGG | - | Chr7:55576766-55576785 | MsG0780038941.01.T01:CDS | 30.0% | |
| ! | AAAATCGAGCCAATGATTTT+TGG | + | Chr7:55576824-55576843 | None:intergenic | 30.0% |
| !!! | AAAAATCATTGGCTCGATTT+TGG | - | Chr7:55576823-55576842 | MsG0780038941.01.T01:CDS | 30.0% |
| !!! | CAATGATTTTTGGTATGGAT+CGG | + | Chr7:55576814-55576833 | None:intergenic | 30.0% |
| AAAATGTAGCGATTGCGATT+TGG | + | Chr7:55576923-55576942 | None:intergenic | 35.0% | |
| AAATGTAGCGATTGCGATTT+GGG | + | Chr7:55576922-55576941 | None:intergenic | 35.0% | |
| AGCTGAAGAACAAGTTCTTT+GGG | - | Chr7:55577150-55577169 | MsG0780038941.01.T01:intron | 35.0% | |
| ATCACAAGGGATTCTGATAT+AGG | + | Chr7:55576744-55576763 | None:intergenic | 35.0% | |
| CGATCCATACCAAAAATCAT+TGG | - | Chr7:55576812-55576831 | MsG0780038941.01.T01:CDS | 35.0% | |
| CGTGCATAGAAATTGTAATG+CGG | + | Chr7:55576869-55576888 | None:intergenic | 35.0% | |
| GCATAAACAGCTTTCAATGA+AGG | + | Chr7:55577059-55577078 | None:intergenic | 35.0% | |
| GCCTTGAAATTTGCAAAAAG+AGG | + | Chr7:55577353-55577372 | None:intergenic | 35.0% | |
| TTGGATGGTTGAGAAATTCT+TGG | + | Chr7:55577301-55577320 | None:intergenic | 35.0% | |
| ! | CCCTCTTTTTGCAAATTTCA+AGG | - | Chr7:55577349-55577368 | MsG0780038941.01.T01:CDS | 35.0% |
| CAGATTGCTCTTAAGTGGAA+AGG | - | Chr7:55576612-55576631 | MsG0780038941.01.T01:CDS | 40.0% | |
| CATTCTCCTTCACAATTGGA+TGG | + | Chr7:55577316-55577335 | None:intergenic | 40.0% | |
| CTGAAGAACAAGTTCTTTGG+GGG | - | Chr7:55577152-55577171 | MsG0780038941.01.T01:intron | 40.0% | |
| GAGCTGAAGAACAAGTTCTT+TGG | - | Chr7:55577149-55577168 | MsG0780038941.01.T01:intron | 40.0% | |
| GCTGAAGAACAAGTTCTTTG+GGG | - | Chr7:55577151-55577170 | MsG0780038941.01.T01:intron | 40.0% | |
| TCCAGTTCATAAGAAGGTTC+CGG | - | Chr7:55576698-55576717 | MsG0780038941.01.T01:CDS | 40.0% | |
| TCTCAACCATCCAATTGTGA+AGG | - | Chr7:55577307-55577326 | MsG0780038941.01.T01:CDS | 40.0% | |
| TGGCTCCATTTGTAAAGCTT+TGG | + | Chr7:55577281-55577300 | None:intergenic | 40.0% | |
| ! | CTGCTGTGTTCATAGCTTTT+TGG | - | Chr7:55577201-55577220 | MsG0780038941.01.T01:CDS | 40.0% |
| ! | TGGTCGAAATTCATCGATTG+TGG | - | Chr7:55576843-55576862 | MsG0780038941.01.T01:CDS | 40.0% |
| !! | GAGGAGAAGATCACTTTTGT+TGG | + | Chr7:55576670-55576689 | None:intergenic | 40.0% |
| !!! | CGAGCCAATGATTTTTGGTA+TGG | + | Chr7:55576819-55576838 | None:intergenic | 40.0% |
| !!! | GATTTTTGGTATGGATCGGA+CGG | + | Chr7:55576810-55576829 | None:intergenic | 40.0% |
| ACCGGAACCTTCTTATGAAC+TGG | + | Chr7:55576702-55576721 | None:intergenic | 45.0% | |
| ATCTGTACCCTGCAAGCAAA+TGG | + | Chr7:55576597-55576616 | None:intergenic | 45.0% | |
| GCAAAAAGAGGGTCTCTAAG+AGG | + | Chr7:55577341-55577360 | None:intergenic | 45.0% | |
| GGCACATTCTCCTTCACAAT+TGG | + | Chr7:55577320-55577339 | None:intergenic | 45.0% | |
| GGGTACAGATTGCTCTTAAG+TGG | - | Chr7:55576607-55576626 | MsG0780038941.01.T01:CDS | 45.0% | |
| TATGGATCGGACGGCAAAAT+GGG | + | Chr7:55576801-55576820 | None:intergenic | 45.0% | |
| TCTGTACCCTGCAAGCAAAT+GGG | + | Chr7:55576596-55576615 | None:intergenic | 45.0% | |
| ! | CAGGAAGAGGCGAAACTTTT+AGG | - | Chr7:55576558-55576577 | MsG0780038941.01.T01:CDS | 45.0% |
| ! | TTCTTTGGGGGAGAAGAGAT+TGG | - | Chr7:55577164-55577183 | MsG0780038941.01.T01:intron | 45.0% |
| ! | TTTCGCCTCTTCCTGATTTG+CGG | + | Chr7:55576553-55576572 | None:intergenic | 45.0% |
| !! | GCGAAACTTTTAGGAGCTCT+GGG | - | Chr7:55576567-55576586 | MsG0780038941.01.T01:CDS | 45.0% |
| !!! | GGGAGAAGAGATTGGTTTTG+TGG | - | Chr7:55577172-55577191 | MsG0780038941.01.T01:CDS | 45.0% |
| GTATGGATCGGACGGCAAAA+TGG | + | Chr7:55576802-55576821 | None:intergenic | 50.0% | |
| !! | GGCGAAACTTTTAGGAGCTC+TGG | - | Chr7:55576566-55576585 | MsG0780038941.01.T01:CDS | 50.0% |
| GGGAAGCCCATTTGCTTGCA+GGG | - | Chr7:55576587-55576606 | MsG0780038941.01.T01:CDS | 55.0% | |
| TGGGAAGCCCATTTGCTTGC+AGG | - | Chr7:55576586-55576605 | MsG0780038941.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 55576546 | 55577406 | 55576546 | ID=MsG0780038941.01;Name=MsG0780038941.01 |
| Chr7 | mRNA | 55576546 | 55577406 | 55576546 | ID=MsG0780038941.01.T01;Parent=MsG0780038941.01;Name=MsG0780038941.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|198 |
| Chr7 | exon | 55577170 | 55577406 | 55577170 | ID=MsG0780038941.01.T01:exon:7795;Parent=MsG0780038941.01.T01 |
| Chr7 | exon | 55576546 | 55576905 | 55576546 | ID=MsG0780038941.01.T01:exon:7794;Parent=MsG0780038941.01.T01 |
| Chr7 | CDS | 55577170 | 55577406 | 55577170 | ID=MsG0780038941.01.T01:cds;Parent=MsG0780038941.01.T01 |
| Chr7 | CDS | 55576546 | 55576905 | 55576546 | ID=MsG0780038941.01.T01:cds;Parent=MsG0780038941.01.T01 |
| Gene Sequence |
| Protein sequence |
