Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002272.01.T01 | XP_003623202.3 | 98.222 | 225 | 4 | 0 | 1 | 225 | 1 | 225 | 3.35E-160 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002272.01.T01 | P32110 | 77.679 | 224 | 49 | 1 | 1 | 223 | 1 | 224 | 1.82E-127 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002272.01.T01 | I3S467 | 98.222 | 225 | 4 | 0 | 1 | 225 | 1 | 225 | 1.60e-160 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002272.01 | MsG0780038936.01 | 0.870045 | 1.961997e-66 | 7.525416e-63 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002272.01.T01 | MTR_7g065660 | 97.778 | 225 | 5 | 0 | 1 | 225 | 1 | 225 | 2.62e-163 | 450 |
| MsG0180002272.01.T01 | MTR_7g065640 | 84.889 | 225 | 16 | 1 | 1 | 225 | 1 | 207 | 2.72e-136 | 381 |
| MsG0180002272.01.T01 | MTR_7g065740 | 76.991 | 226 | 51 | 1 | 1 | 225 | 1 | 226 | 4.53e-132 | 371 |
| MsG0180002272.01.T01 | MTR_7g065720 | 77.376 | 221 | 49 | 1 | 1 | 220 | 1 | 221 | 3.82e-128 | 361 |
| MsG0180002272.01.T01 | MTR_7g065750 | 73.009 | 226 | 60 | 1 | 1 | 225 | 1 | 226 | 2.48e-123 | 349 |
| MsG0180002272.01.T01 | MTR_7g065590 | 68.610 | 223 | 70 | 0 | 1 | 223 | 1 | 223 | 5.37e-115 | 328 |
| MsG0180002272.01.T01 | MTR_7g065600 | 67.713 | 223 | 72 | 0 | 1 | 223 | 1 | 223 | 2.27e-113 | 323 |
| MsG0180002272.01.T01 | MTR_7g065290 | 68.161 | 223 | 71 | 0 | 1 | 223 | 1 | 223 | 1.18e-112 | 322 |
| MsG0180002272.01.T01 | MTR_7g065265 | 67.713 | 223 | 72 | 0 | 1 | 223 | 1 | 223 | 3.31e-110 | 315 |
| MsG0180002272.01.T01 | MTR_7g065630 | 68.444 | 225 | 67 | 1 | 1 | 225 | 19 | 239 | 3.17e-109 | 313 |
| MsG0180002272.01.T01 | MTR_7g065270 | 64.574 | 223 | 79 | 0 | 1 | 223 | 1 | 223 | 6.46e-107 | 307 |
| MsG0180002272.01.T01 | MTR_4g019790 | 61.778 | 225 | 86 | 0 | 1 | 225 | 1 | 225 | 2.21e-104 | 301 |
| MsG0180002272.01.T01 | MTR_7g065230 | 65.778 | 225 | 71 | 2 | 1 | 225 | 1 | 219 | 2.71e-102 | 295 |
| MsG0180002272.01.T01 | MTR_7g065260 | 66.372 | 226 | 74 | 2 | 1 | 225 | 8 | 232 | 1.24e-99 | 289 |
| MsG0180002272.01.T01 | MTR_7g065710 | 65.217 | 207 | 68 | 1 | 8 | 214 | 5 | 207 | 7.96e-97 | 281 |
| MsG0180002272.01.T01 | MTR_4g019780 | 61.751 | 217 | 80 | 3 | 1 | 215 | 1 | 216 | 2.11e-95 | 278 |
| MsG0180002272.01.T01 | MTR_7g065680 | 64.444 | 225 | 76 | 1 | 1 | 225 | 1 | 221 | 3.13e-93 | 272 |
| MsG0180002272.01.T01 | MTR_7g065700 | 67.757 | 214 | 65 | 1 | 1 | 214 | 1 | 210 | 6.07e-93 | 272 |
| MsG0180002272.01.T01 | MTR_6g080440 | 45.673 | 208 | 109 | 4 | 8 | 213 | 4 | 209 | 1.26e-64 | 200 |
| MsG0180002272.01.T01 | MTR_3g099757 | 47.059 | 221 | 115 | 2 | 5 | 224 | 3 | 222 | 2.23e-62 | 194 |
| MsG0180002272.01.T01 | MTR_8g087425 | 42.202 | 218 | 124 | 2 | 3 | 219 | 1 | 217 | 2.01e-61 | 192 |
| MsG0180002272.01.T01 | MTR_8g087410 | 44.240 | 217 | 118 | 3 | 1 | 216 | 1 | 215 | 7.23e-61 | 190 |
| MsG0180002272.01.T01 | MTR_1g090150 | 44.395 | 223 | 119 | 3 | 5 | 224 | 1 | 221 | 1.08e-59 | 187 |
| MsG0180002272.01.T01 | MTR_1g090070 | 42.986 | 221 | 121 | 3 | 8 | 224 | 10 | 229 | 4.57e-59 | 186 |
| MsG0180002272.01.T01 | MTR_5g040430 | 42.793 | 222 | 119 | 3 | 1 | 215 | 1 | 221 | 4.05e-58 | 183 |
| MsG0180002272.01.T01 | MTR_4g059730 | 46.512 | 215 | 107 | 3 | 6 | 215 | 3 | 214 | 5.57e-58 | 183 |
| MsG0180002272.01.T01 | MTR_1g115195 | 44.860 | 214 | 111 | 3 | 8 | 216 | 4 | 215 | 1.01e-56 | 180 |
| MsG0180002272.01.T01 | MTR_5g037380 | 43.182 | 220 | 115 | 3 | 1 | 212 | 1 | 218 | 3.06e-54 | 174 |
| MsG0180002272.01.T01 | MTR_1g090060 | 42.727 | 220 | 120 | 4 | 8 | 223 | 4 | 221 | 4.36e-54 | 173 |
| MsG0180002272.01.T01 | MTR_1g090100 | 43.182 | 220 | 119 | 4 | 8 | 223 | 3 | 220 | 4.35e-53 | 170 |
| MsG0180002272.01.T01 | MTR_1g090090 | 43.333 | 210 | 111 | 5 | 8 | 212 | 4 | 210 | 2.83e-51 | 166 |
| MsG0180002272.01.T01 | MTR_4g124130 | 44.651 | 215 | 109 | 6 | 5 | 214 | 2 | 211 | 8.32e-48 | 157 |
| MsG0180002272.01.T01 | MTR_2g070150 | 41.176 | 204 | 115 | 4 | 6 | 207 | 3 | 203 | 7.17e-47 | 154 |
| MsG0180002272.01.T01 | MTR_2g070200 | 41.232 | 211 | 119 | 4 | 6 | 213 | 3 | 211 | 1.72e-46 | 154 |
| MsG0180002272.01.T01 | MTR_2g070140 | 41.026 | 195 | 110 | 4 | 21 | 213 | 2 | 193 | 1.80e-46 | 153 |
| MsG0180002272.01.T01 | MTR_8g061950 | 40.455 | 220 | 121 | 5 | 5 | 215 | 3 | 221 | 3.60e-46 | 153 |
| MsG0180002272.01.T01 | MTR_3g467420 | 41.346 | 208 | 117 | 4 | 7 | 212 | 9 | 213 | 1.56e-45 | 151 |
| MsG0180002272.01.T01 | MTR_2g070130 | 39.806 | 206 | 119 | 4 | 6 | 209 | 3 | 205 | 2.69e-45 | 150 |
| MsG0180002272.01.T01 | MTR_2g070210 | 41.038 | 212 | 118 | 5 | 6 | 213 | 3 | 211 | 6.84e-45 | 149 |
| MsG0180002272.01.T01 | MTR_2g070180 | 40.196 | 204 | 117 | 4 | 6 | 207 | 3 | 203 | 2.80e-44 | 148 |
| MsG0180002272.01.T01 | MTR_8g056940 | 40.367 | 218 | 122 | 5 | 6 | 218 | 3 | 217 | 3.38e-44 | 147 |
| MsG0180002272.01.T01 | MTR_5g076900 | 39.151 | 212 | 124 | 4 | 3 | 212 | 2 | 210 | 1.35e-43 | 146 |
| MsG0180002272.01.T01 | MTR_3g467430 | 38.863 | 211 | 124 | 4 | 4 | 212 | 6 | 213 | 1.51e-42 | 144 |
| MsG0180002272.01.T01 | MTR_2g070120 | 40.376 | 213 | 116 | 6 | 6 | 213 | 3 | 209 | 1.76e-42 | 143 |
| MsG0180002272.01.T01 | MTR_2g070070 | 39.070 | 215 | 126 | 4 | 8 | 220 | 5 | 216 | 5.42e-41 | 139 |
| MsG0180002272.01.T01 | MTR_2g070060 | 36.715 | 207 | 126 | 4 | 8 | 212 | 5 | 208 | 3.18e-39 | 135 |
| MsG0180002272.01.T01 | MTR_0186s0030 | 49.286 | 140 | 69 | 2 | 6 | 144 | 3 | 141 | 2.37e-36 | 125 |
| MsG0180002272.01.T01 | MTR_2g070110 | 39.614 | 207 | 119 | 6 | 8 | 212 | 5 | 207 | 2.31e-35 | 125 |
| MsG0180002272.01.T01 | MTR_2g072120 | 46.774 | 62 | 32 | 1 | 51 | 111 | 2 | 63 | 3.33e-15 | 68.6 |
| MsG0180002272.01.T01 | MTR_4g134370 | 32.367 | 207 | 108 | 8 | 21 | 208 | 29 | 222 | 6.41e-13 | 66.2 |
| MsG0180002272.01.T01 | MTR_4g134380 | 30.918 | 207 | 111 | 8 | 21 | 208 | 29 | 222 | 1.81e-12 | 64.7 |
| MsG0180002272.01.T01 | MTR_5g037390 | 43.836 | 73 | 38 | 1 | 31 | 100 | 11 | 83 | 2.28e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002272.01.T01 | AT3G09270 | 49.776 | 223 | 108 | 4 | 3 | 222 | 2 | 223 | 8.92e-76 | 228 |
| MsG0180002272.01.T01 | AT2G29420 | 48.402 | 219 | 111 | 2 | 3 | 220 | 5 | 222 | 7.89e-74 | 223 |
| MsG0180002272.01.T01 | AT2G29490 | 48.804 | 209 | 104 | 3 | 1 | 207 | 1 | 208 | 3.69e-62 | 194 |
| MsG0180002272.01.T01 | AT2G29450 | 48.792 | 207 | 104 | 2 | 3 | 207 | 2 | 208 | 1.40e-59 | 187 |
| MsG0180002272.01.T01 | AT2G29480 | 46.411 | 209 | 109 | 3 | 1 | 207 | 1 | 208 | 6.91e-58 | 183 |
| MsG0180002272.01.T01 | AT2G29460 | 44.000 | 225 | 123 | 3 | 1 | 223 | 1 | 224 | 2.05e-57 | 182 |
| MsG0180002272.01.T01 | AT2G29440 | 44.444 | 225 | 121 | 4 | 1 | 223 | 1 | 223 | 9.63e-56 | 177 |
| MsG0180002272.01.T01 | AT2G29470 | 42.857 | 210 | 116 | 4 | 1 | 207 | 1 | 209 | 4.67e-54 | 173 |
| MsG0180002272.01.T01 | AT1G10370 | 40.092 | 217 | 123 | 2 | 5 | 214 | 3 | 219 | 8.92e-50 | 162 |
| MsG0180002272.01.T01 | AT1G69930 | 40.435 | 230 | 119 | 5 | 2 | 219 | 7 | 230 | 1.78e-49 | 162 |
| MsG0180002272.01.T01 | AT1G59670 | 41.475 | 217 | 119 | 3 | 5 | 213 | 4 | 220 | 2.50e-49 | 161 |
| MsG0180002272.01.T01 | AT1G78340 | 43.541 | 209 | 113 | 4 | 6 | 212 | 3 | 208 | 8.11e-49 | 159 |
| MsG0180002272.01.T01 | AT1G59700 | 45.000 | 220 | 109 | 6 | 5 | 214 | 4 | 221 | 1.18e-48 | 159 |
| MsG0180002272.01.T01 | AT1G78370 | 40.000 | 205 | 118 | 4 | 10 | 212 | 7 | 208 | 1.51e-48 | 159 |
| MsG0180002272.01.T01 | AT1G78380 | 42.029 | 207 | 115 | 4 | 8 | 212 | 5 | 208 | 9.33e-48 | 157 |
| MsG0180002272.01.T01 | AT1G27130 | 37.778 | 225 | 131 | 4 | 1 | 217 | 1 | 224 | 3.47e-47 | 155 |
| MsG0180002272.01.T01 | AT1G10360 | 40.566 | 212 | 115 | 5 | 1 | 204 | 1 | 209 | 4.26e-47 | 155 |
| MsG0180002272.01.T01 | AT1G78320 | 42.079 | 202 | 112 | 4 | 5 | 204 | 2 | 200 | 6.81e-47 | 154 |
| MsG0180002272.01.T01 | AT1G53680 | 41.121 | 214 | 119 | 5 | 1 | 210 | 1 | 211 | 3.63e-46 | 153 |
| MsG0180002272.01.T01 | AT1G27140 | 38.197 | 233 | 122 | 6 | 1 | 218 | 1 | 226 | 9.84e-46 | 152 |
| MsG0180002272.01.T01 | AT1G17180 | 40.191 | 209 | 120 | 4 | 6 | 212 | 3 | 208 | 2.62e-45 | 150 |
| MsG0180002272.01.T01 | AT1G17170 | 40.092 | 217 | 124 | 5 | 6 | 220 | 3 | 215 | 6.10e-45 | 149 |
| MsG0180002272.01.T01 | AT1G17190 | 42.927 | 205 | 110 | 5 | 1 | 203 | 1 | 200 | 3.48e-44 | 147 |
| MsG0180002272.01.T01 | AT5G62480 | 37.156 | 218 | 126 | 3 | 8 | 215 | 9 | 225 | 3.31e-42 | 143 |
| MsG0180002272.01.T01 | AT1G74590 | 36.638 | 232 | 137 | 5 | 1 | 224 | 1 | 230 | 1.91e-41 | 141 |
| MsG0180002272.01.T01 | AT1G69920 | 35.242 | 227 | 137 | 5 | 1 | 217 | 26 | 252 | 2.49e-41 | 141 |
| MsG0180002272.01.T01 | AT1G78360 | 40.385 | 208 | 118 | 5 | 8 | 212 | 5 | 209 | 1.91e-40 | 138 |
| MsG0180002272.01.T01 | AT3G43800 | 39.070 | 215 | 120 | 8 | 4 | 212 | 2 | 211 | 1.58e-38 | 133 |
| MsG0180002272.01.T01 | AT1G78320 | 33.333 | 207 | 108 | 4 | 5 | 210 | 2 | 179 | 7.53e-30 | 110 |
| MsG0180002272.01.T01 | AT5G62480 | 29.493 | 217 | 118 | 3 | 8 | 215 | 9 | 199 | 8.23e-26 | 100 |
| MsG0180002272.01.T01 | AT5G62480 | 29.032 | 217 | 118 | 3 | 8 | 215 | 9 | 198 | 4.86e-25 | 98.2 |
| MsG0180002272.01.T01 | AT2G02380 | 27.064 | 218 | 136 | 5 | 5 | 208 | 9 | 217 | 2.63e-13 | 67.0 |
| MsG0180002272.01.T01 | AT2G02390 | 26.697 | 221 | 137 | 6 | 3 | 208 | 4 | 214 | 4.06e-13 | 66.6 |
| MsG0180002272.01.T01 | AT2G02390 | 25.877 | 228 | 137 | 6 | 3 | 208 | 4 | 221 | 4.19e-12 | 63.9 |
| MsG0180002272.01.T01 | AT2G02390 | 37.755 | 98 | 55 | 3 | 3 | 96 | 4 | 99 | 8.79e-11 | 59.7 |
Find 57 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGGGGAACTAGTTAATT+TGG | 0.177108 | 1:+36055035 | None:intergenic |
| ATTCAATTCCCTTCAACTTT+AGG | 0.179432 | 1:+36056128 | None:intergenic |
| GAACTAGTTAATTTGGAATT+AGG | 0.210695 | 1:+36055042 | None:intergenic |
| TTCAATTCCCTTCAACTTTA+GGG | 0.216844 | 1:+36056129 | None:intergenic |
| TGTGGATCAGATGGCAAAAT+AGG | 0.266275 | 1:+36055950 | None:intergenic |
| TCAGGAACATGTGAAGCTTT+TGG | 0.271941 | 1:-36056191 | MsG0180002272.01.T01:CDS |
| GTTAATTTGGAATTAGGTTT+AGG | 0.280641 | 1:+36055048 | None:intergenic |
| CGATGAATTTCGACCAAAAT+CGG | 0.290748 | 1:+36055912 | None:intergenic |
| ACAACGATATGCAACTTCTT+TGG | 0.291777 | 1:-36055100 | MsG0180002272.01.T01:three_prime_UTR |
| AAAGAGCCTTGGCCCGATTT+TGG | 0.304052 | 1:-36055925 | MsG0180002272.01.T01:CDS |
| TTCATAGCGACCTTTGAAAA+AGG | 0.304685 | 1:+36055417 | None:intergenic |
| CAGGAAGCCCATTTGTTTGC+AGG | 0.313766 | 1:-36056162 | MsG0180002272.01.T01:CDS |
| TGACTCCAATTGTAAAGCTT+TGG | 0.323925 | 1:+36055499 | None:intergenic |
| ACTGGAACCTTCTTATGAAC+TGG | 0.340800 | 1:+36056049 | None:intergenic |
| TTGAGTACATTGATGAGGTT+TGG | 0.371974 | 1:-36055982 | MsG0180002272.01.T01:CDS |
| ATCACAAGGGATTCTGATAT+AGG | 0.376717 | 1:+36056007 | None:intergenic |
| AAAATCGGGCCAAGGCTCTT+TGG | 0.379828 | 1:+36055927 | None:intergenic |
| ATCTGTACCCTGCAAACAAA+TGG | 0.380262 | 1:+36056154 | None:intergenic |
| TATTCCAATGGCTACAAATC+AGG | 0.394991 | 1:-36056209 | MsG0180002272.01.T01:exon |
| TGTTCCTGATTTGTAGCCAT+TGG | 0.411157 | 1:+36056205 | None:intergenic |
| AGTTTCCAAAGCTTTACAAT+TGG | 0.429443 | 1:-36055504 | MsG0180002272.01.T01:CDS |
| TTTGAGAAGTTGTTCACTCT+TGG | 0.446515 | 1:+36056078 | None:intergenic |
| GTGGATCAGATGGCAAAATA+GGG | 0.455086 | 1:+36055951 | None:intergenic |
| GGAAGAGTTTCCTTCACAAC+AGG | 0.459805 | 1:+36055460 | None:intergenic |
| GATGAATTTCGACCAAAATC+GGG | 0.473260 | 1:+36055913 | None:intergenic |
| GAGAAGTTGTTCACTCTTGG+TGG | 0.473918 | 1:+36056081 | None:intergenic |
| CTTTCTTGAGAATGAGCTGA+AGG | 0.480191 | 1:-36055641 | MsG0180002272.01.T01:CDS |
| GAGCTGAAGGACAAGTACTT+TGG | 0.487897 | 1:-36055628 | MsG0180002272.01.T01:CDS |
| ACAGATTGCCCTAAAGTTGA+AGG | 0.490558 | 1:-36056137 | MsG0180002272.01.T01:CDS |
| AAGGCGAAAAGAGGCTCTCT+AGG | 0.492189 | 1:+36055436 | None:intergenic |
| CAATATTCTTAGATTTCACA+TGG | 0.502124 | 1:+36055248 | None:intergenic |
| TCTTGACCATCCTGTTGTGA+AGG | 0.516835 | 1:-36055470 | MsG0180002272.01.T01:CDS |
| TCTGTACCCTGCAAACAAAT+GGG | 0.518765 | 1:+36056155 | None:intergenic |
| AGAAAATTTAAGTATTCCAA+TGG | 0.531426 | 1:-36056221 | MsG0180002272.01.T01:exon |
| AGGAAGCCCATTTGTTTGCA+GGG | 0.536094 | 1:-36056161 | MsG0180002272.01.T01:CDS |
| CTGAAGGACAAGTACTTTGG+AGG | 0.536116 | 1:-36055625 | MsG0180002272.01.T01:CDS |
| GCTCTTTGGTGTGGATCAGA+TGG | 0.538497 | 1:+36055941 | None:intergenic |
| TACTTCAATTAATAATGAGA+AGG | 0.553286 | 1:-36055212 | MsG0180002272.01.T01:three_prime_UTR |
| CTCAAGAAAGTGAAGAGCCT+CGG | 0.554393 | 1:+36055654 | None:intergenic |
| ATATAATCCAGTTCATAAGA+AGG | 0.555508 | 1:-36056056 | MsG0180002272.01.T01:CDS |
| TGATCCACACCAAAGAGCCT+TGG | 0.571632 | 1:-36055936 | MsG0180002272.01.T01:CDS |
| CGGGCCAAGGCTCTTTGGTG+TGG | 0.573727 | 1:+36055932 | None:intergenic |
| TCTACTTCGAAGCAGCAAGA+AGG | 0.577537 | 1:+36055392 | None:intergenic |
| TGATATAGTGTGCTGAGACT+CGG | 0.592375 | 1:-36055357 | MsG0180002272.01.T01:three_prime_UTR |
| ACTTCAATTAATAATGAGAA+GGG | 0.593062 | 1:-36055211 | MsG0180002272.01.T01:three_prime_UTR |
| GTCGAAATTCATCGATGACA+AGG | 0.602256 | 1:-36055903 | MsG0180002272.01.T01:intron |
| CAATGTACTCAAGAATCACA+AGG | 0.603760 | 1:+36055993 | None:intergenic |
| CGTTGTTATCCATCGACCAA+AGG | 0.604264 | 1:+36055117 | None:intergenic |
| TTTCGACCAAAATCGGGCCA+AGG | 0.607291 | 1:+36055919 | None:intergenic |
| CAGATTGCCCTAAAGTTGAA+GGG | 0.623639 | 1:-36056136 | MsG0180002272.01.T01:CDS |
| GAGTTTCCTTCACAACAGGA+TGG | 0.647022 | 1:+36055464 | None:intergenic |
| CTGTTATATCTTGAACCAGA+GGG | 0.656304 | 1:+36055551 | None:intergenic |
| GATTCTTGAGTACATTGATG+AGG | 0.659384 | 1:-36055987 | MsG0180002272.01.T01:CDS |
| GCGAAAAGAGGCTCTCTAGG+AGG | 0.667448 | 1:+36055439 | None:intergenic |
| GAATATTGAAGAAGCAACCG+AGG | 0.675188 | 1:-36055671 | MsG0180002272.01.T01:CDS |
| TCTGTTATATCTTGAACCAG+AGG | 0.692961 | 1:+36055550 | None:intergenic |
| AATGTACTCAAGAATCACAA+GGG | 0.712264 | 1:+36055994 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGACTAAAAAATCTTAAAG+AGG | + | Chr1:36055446-36055465 | None:intergenic | 20.0% |
| !! | ACTTCAATTAATAATGAGAA+GGG | - | Chr1:36056106-36056125 | MsG0180002272.01.T01:CDS | 20.0% |
| !! | AGAAAATTTAAGTATTCCAA+TGG | - | Chr1:36055096-36055115 | MsG0180002272.01.T01:three_prime_UTR | 20.0% |
| !! | TACTTCAATTAATAATGAGA+AGG | - | Chr1:36056105-36056124 | MsG0180002272.01.T01:CDS | 20.0% |
| !!! | TTTTCTATGACTTTGATAAT+TGG | + | Chr1:36055082-36055101 | None:intergenic | 20.0% |
| ! | ATATAATCCAGTTCATAAGA+AGG | - | Chr1:36055261-36055280 | MsG0180002272.01.T01:three_prime_UTR | 25.0% |
| ! | CAATATTCTTAGATTTCACA+TGG | + | Chr1:36056072-36056091 | None:intergenic | 25.0% |
| ! | TTTCTCATCAAGTGTAAAAA+CGG | + | Chr1:36055615-36055634 | None:intergenic | 25.0% |
| !! | AAAAACGGATTTAAATGATG+AGG | + | Chr1:36055600-36055619 | None:intergenic | 25.0% |
| !!! | TCTGTCATTTATTTTTCCTT+TGG | - | Chr1:36056184-36056203 | MsG0180002272.01.T01:CDS | 25.0% |
| AATGTACTCAAGAATCACAA+GGG | + | Chr1:36055326-36055345 | None:intergenic | 30.0% | |
| AGTTTCCAAAGCTTTACAAT+TGG | - | Chr1:36055813-36055832 | MsG0180002272.01.T01:intron | 30.0% | |
| ATTCAATTCCCTTCAACTTT+AGG | + | Chr1:36055192-36055211 | None:intergenic | 30.0% | |
| TTCAATTCCCTTCAACTTTA+GGG | + | Chr1:36055191-36055210 | None:intergenic | 30.0% | |
| TTCTCATTGTGAACAAAAAC+TGG | + | Chr1:36055289-36055308 | None:intergenic | 30.0% | |
| ! | TCTGTCATTGAGTTTTTGTT+AGG | - | Chr1:36056006-36056025 | MsG0180002272.01.T01:CDS | 30.0% |
| !! | TTTATTTTTCCTTTGGTCGA+TGG | - | Chr1:36056191-36056210 | MsG0180002272.01.T01:CDS | 30.0% |
| ACAACGATATGCAACTTCTT+TGG | - | Chr1:36056217-36056236 | MsG0180002272.01.T01:exon | 35.0% | |
| ATCACAAGGGATTCTGATAT+AGG | + | Chr1:36055313-36055332 | None:intergenic | 35.0% | |
| CAATGTACTCAAGAATCACA+AGG | + | Chr1:36055327-36055346 | None:intergenic | 35.0% | |
| CGATGAATTTCGACCAAAAT+CGG | + | Chr1:36055408-36055427 | None:intergenic | 35.0% | |
| CTGTTATATCTTGAACCAGA+GGG | + | Chr1:36055769-36055788 | None:intergenic | 35.0% | |
| GATGAATTTCGACCAAAATC+GGG | + | Chr1:36055407-36055426 | None:intergenic | 35.0% | |
| GATTCTTGAGTACATTGATG+AGG | - | Chr1:36055330-36055349 | MsG0180002272.01.T01:three_prime_UTR | 35.0% | |
| TATTCCAATGGCTACAAATC+AGG | - | Chr1:36055108-36055127 | MsG0180002272.01.T01:three_prime_UTR | 35.0% | |
| TCTGTTATATCTTGAACCAG+AGG | + | Chr1:36055770-36055789 | None:intergenic | 35.0% | |
| TGACTCCAATTGTAAAGCTT+TGG | + | Chr1:36055821-36055840 | None:intergenic | 35.0% | |
| TTGAGTACATTGATGAGGTT+TGG | - | Chr1:36055335-36055354 | MsG0180002272.01.T01:three_prime_UTR | 35.0% | |
| TTTGAGAAGTTGTTCACTCT+TGG | + | Chr1:36055242-36055261 | None:intergenic | 35.0% | |
| ! | TTCATAGCGACCTTTGAAAA+AGG | + | Chr1:36055903-36055922 | None:intergenic | 35.0% |
| ACAGATTGCCCTAAAGTTGA+AGG | - | Chr1:36055180-36055199 | MsG0180002272.01.T01:three_prime_UTR | 40.0% | |
| ACTGGAACCTTCTTATGAAC+TGG | + | Chr1:36055271-36055290 | None:intergenic | 40.0% | |
| ATCTGTACCCTGCAAACAAA+TGG | + | Chr1:36055166-36055185 | None:intergenic | 40.0% | |
| CAGATTGCCCTAAAGTTGAA+GGG | - | Chr1:36055181-36055200 | MsG0180002272.01.T01:three_prime_UTR | 40.0% | |
| CTTTCTTGAGAATGAGCTGA+AGG | - | Chr1:36055676-36055695 | MsG0180002272.01.T01:CDS | 40.0% | |
| GAATATTGAAGAAGCAACCG+AGG | - | Chr1:36055646-36055665 | MsG0180002272.01.T01:CDS | 40.0% | |
| GTCGAAATTCATCGATGACA+AGG | - | Chr1:36055414-36055433 | MsG0180002272.01.T01:CDS | 40.0% | |
| GTGGATCAGATGGCAAAATA+GGG | + | Chr1:36055369-36055388 | None:intergenic | 40.0% | |
| TCTGTACCCTGCAAACAAAT+GGG | + | Chr1:36055165-36055184 | None:intergenic | 40.0% | |
| TGATATAGTGTGCTGAGACT+CGG | - | Chr1:36055960-36055979 | MsG0180002272.01.T01:CDS | 40.0% | |
| TGTGGATCAGATGGCAAAAT+AGG | + | Chr1:36055370-36055389 | None:intergenic | 40.0% | |
| ! | CAGGAACATGTGAAGCTTTT+GGG | - | Chr1:36055127-36055146 | MsG0180002272.01.T01:three_prime_UTR | 40.0% |
| ! | CCTTTGAAAAAGGCGAAAAG+AGG | + | Chr1:36055893-36055912 | None:intergenic | 40.0% |
| ! | TCAGGAACATGTGAAGCTTT+TGG | - | Chr1:36055126-36055145 | MsG0180002272.01.T01:three_prime_UTR | 40.0% |
| ! | TGTTCCTGATTTGTAGCCAT+TGG | + | Chr1:36055115-36055134 | None:intergenic | 40.0% |
| !!! | CCTCTTTTCGCCTTTTTCAA+AGG | - | Chr1:36055890-36055909 | MsG0180002272.01.T01:intron | 40.0% |
| !!! | TGCTGTTTTCGTCGCATTTT+GGG | - | Chr1:36055742-36055761 | MsG0180002272.01.T01:intron | 40.0% |
| AGGAAGCCCATTTGTTTGCA+GGG | - | Chr1:36055156-36055175 | MsG0180002272.01.T01:three_prime_UTR | 45.0% | |
| CGTTGTTATCCATCGACCAA+AGG | + | Chr1:36056203-36056222 | None:intergenic | 45.0% | |
| CTCAAGAAAGTGAAGAGCCT+CGG | + | Chr1:36055666-36055685 | None:intergenic | 45.0% | |
| CTGAAGGACAAGTACTTTGG+AGG | - | Chr1:36055692-36055711 | MsG0180002272.01.T01:CDS | 45.0% | |
| GAGAAGTTGTTCACTCTTGG+TGG | + | Chr1:36055239-36055258 | None:intergenic | 45.0% | |
| GAGCTGAAGGACAAGTACTT+TGG | - | Chr1:36055689-36055708 | MsG0180002272.01.T01:CDS | 45.0% | |
| GAGTTTCCTTCACAACAGGA+TGG | + | Chr1:36055856-36055875 | None:intergenic | 45.0% | |
| GGAAGAGTTTCCTTCACAAC+AGG | + | Chr1:36055860-36055879 | None:intergenic | 45.0% | |
| TCTACTTCGAAGCAGCAAGA+AGG | + | Chr1:36055928-36055947 | None:intergenic | 45.0% | |
| TCTTGACCATCCTGTTGTGA+AGG | - | Chr1:36055847-36055866 | MsG0180002272.01.T01:intron | 45.0% | |
| !!! | CTGCTGTTTTCGTCGCATTT+TGG | - | Chr1:36055741-36055760 | MsG0180002272.01.T01:intron | 45.0% |
| !!! | TTTTTTTTAATTCTAAATAA+TGG | - | Chr1:36056133-36056152 | MsG0180002272.01.T01:CDS | 5.0% |
| AAAATCGGGCCAAGGCTCTT+TGG | + | Chr1:36055393-36055412 | None:intergenic | 50.0% | |
| AAGGCGAAAAGAGGCTCTCT+AGG | + | Chr1:36055884-36055903 | None:intergenic | 50.0% | |
| CAGGAAGCCCATTTGTTTGC+AGG | - | Chr1:36055155-36055174 | MsG0180002272.01.T01:three_prime_UTR | 50.0% | |
| TGATCCACACCAAAGAGCCT+TGG | - | Chr1:36055381-36055400 | MsG0180002272.01.T01:exon | 50.0% | |
| TTTCGACCAAAATCGGGCCA+AGG | + | Chr1:36055401-36055420 | None:intergenic | 50.0% | |
| ! | AAAGAGCCTTGGCCCGATTT+TGG | - | Chr1:36055392-36055411 | MsG0180002272.01.T01:exon | 50.0% |
| ! | GCTCTTTGGTGTGGATCAGA+TGG | + | Chr1:36055379-36055398 | None:intergenic | 50.0% |
| !! | GTGAAGCTTTTGGGAGCTAC+AGG | - | Chr1:36055136-36055155 | MsG0180002272.01.T01:three_prime_UTR | 50.0% |
| GCGAAAAGAGGCTCTCTAGG+AGG | + | Chr1:36055881-36055900 | None:intergenic | 55.0% | |
| !! | CGTCGCATTTTGGGTCCCTC+TGG | - | Chr1:36055751-36055770 | MsG0180002272.01.T01:intron | 60.0% |
| CGGGCCAAGGCTCTTTGGTG+TGG | + | Chr1:36055388-36055407 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 36055049 | 36056290 | 36055049 | ID=MsG0180002272.01;Name=MsG0180002272.01 |
| Chr1 | mRNA | 36055049 | 36056290 | 36055049 | ID=MsG0180002272.01.T01;Parent=MsG0180002272.01;Name=MsG0180002272.01.T01;_AED=0.42;_eAED=0.42;_QI=66|1|1|1|1|1|2|344|225 |
| Chr1 | exon | 36055049 | 36055749 | 36055049 | ID=MsG0180002272.01.T01:exon:3293;Parent=MsG0180002272.01.T01 |
| Chr1 | exon | 36055904 | 36056290 | 36055904 | ID=MsG0180002272.01.T01:exon:3292;Parent=MsG0180002272.01.T01 |
| Chr1 | five_prime_UTR | 36056225 | 36056290 | 36056225 | ID=MsG0180002272.01.T01:five_prime_utr;Parent=MsG0180002272.01.T01 |
| Chr1 | CDS | 36055904 | 36056224 | 36055904 | ID=MsG0180002272.01.T01:cds;Parent=MsG0180002272.01.T01 |
| Chr1 | CDS | 36055393 | 36055749 | 36055393 | ID=MsG0180002272.01.T01:cds;Parent=MsG0180002272.01.T01 |
| Chr1 | three_prime_UTR | 36055049 | 36055392 | 36055049 | ID=MsG0180002272.01.T01:three_prime_utr;Parent=MsG0180002272.01.T01 |
| Gene Sequence |
| Protein sequence |
