AlfalfaGEDB | MsG0780038939.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038939.01

KEGG: K00799
GO: GO:0005515
PFAM: PF00043 PF02798

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038939.01.T01	XP_003623208.1	96	225	9	0	1	225	1	225	1.80E-156	442

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038939.01.T01	P32110	77.434	226	49	2	1	225	1	225	3.75E-126	358

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038939.01.T01	G7L6I2	96.000	225	9	0	1	225	1	225	8.61e-157	442

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0780038939.01	0.828135	1.063846e-54	1.048153e-51
MsG0080048036.01	MsG0780038939.01	0.860501	1.976216e-63	5.413746e-60
MsG0080048345.01	MsG0780038939.01	0.817805	2.725922e-52	2.005303e-49
MsG0080048347.01	MsG0780038939.01	0.875985	1.999468e-68	9.532813e-65
MsG0080048348.01	MsG0780038939.01	0.822679	2.081533e-53	1.754298e-50
MsG0080048349.01	MsG0780038939.01	0.829904	3.965329e-55	4.114301e-52
MsG0080048350.01	MsG0780038939.01	0.834604	2.722644e-56	3.247197e-53
MsG0080048352.01	MsG0780038939.01	0.865628	5.143511e-65	1.685084e-61
MsG0080048889.01	MsG0780038939.01	0.806410	8.337065e-50	4.521895e-47
MsG0080049066.01	MsG0780038939.01	-0.813575	2.387553e-51	1.565027e-48

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PPI

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Gene1	Gene2	Type
MsG0180002272.01	MsG0780038939.01	PPI
MsG0180002273.01	MsG0780038939.01	PPI
MsG0180002273.01	MsG0780038939.01	PPI
MsG0480018904.01	MsG0780038939.01	PPI
MsG0480018905.01	MsG0780038939.01	PPI
MsG0780038922.01	MsG0780038939.01	PPI
MsG0780038923.01	MsG0780038939.01	PPI
MsG0780038924.01	MsG0780038939.01	PPI
MsG0780038925.01	MsG0780038939.01	PPI
MsG0780038930.01	MsG0780038939.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038939.01.T01	MTR_7g065720	96.000	225	9	0	1	225	1	225	2.18e-160	442
MsG0780038939.01.T01	MTR_7g065660	77.232	224	50	1	1	224	1	223	2.41e-128	361
MsG0780038939.01.T01	MTR_7g065740	75.000	224	56	0	1	224	1	224	4.09e-127	358
MsG0780038939.01.T01	MTR_7g065750	73.894	226	58	1	1	225	1	226	1.75e-123	349
MsG0780038939.01.T01	MTR_7g065640	72.321	224	43	2	1	224	1	205	4.02e-114	325
MsG0780038939.01.T01	MTR_7g065600	68.444	225	70	1	1	225	1	224	2.74e-113	323
MsG0780038939.01.T01	MTR_7g065590	67.556	225	72	1	1	225	1	224	1.61e-112	321
MsG0780038939.01.T01	MTR_7g065290	69.333	225	68	1	1	225	1	224	7.40e-112	320
MsG0780038939.01.T01	MTR_4g019790	64.732	224	78	1	1	224	1	223	1.37e-105	304
MsG0780038939.01.T01	MTR_7g065265	66.222	225	75	1	1	225	1	224	4.47e-105	303

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038939.01.T01	AT3G09270	51.111	225	104	5	4	224	2	224	4.53e-76	229
MsG0780038939.01.T01	AT2G29420	49.545	220	108	2	3	221	5	222	4.34e-75	227
MsG0780038939.01.T01	AT2G29490	47.619	210	106	3	1	208	1	208	1.61e-60	189
MsG0780038939.01.T01	AT2G29480	44.762	210	112	3	1	208	1	208	4.06e-55	176
MsG0780038939.01.T01	AT1G10370	44.712	208	107	3	5	205	3	209	1.33e-54	174
MsG0780038939.01.T01	AT2G29450	46.154	208	109	3	3	208	2	208	1.82e-54	174
MsG0780038939.01.T01	AT2G29460	42.601	223	124	3	1	221	1	221	1.82e-54	174
MsG0780038939.01.T01	AT2G29470	42.654	211	116	4	1	208	1	209	2.65e-53	171
MsG0780038939.01.T01	AT2G29440	45.238	210	110	4	1	208	1	207	3.31e-53	171
MsG0780038939.01.T01	AT1G27130	41.593	226	122	5	1	218	1	224	6.99e-53	170

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Find 44 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGAGCCAAGGCTCTT+TGG	0.372026	7:+55569153	None:intergenic
AAAGAGCCTTGGCTCGATTT+TGG	0.290434	7:-55569151	MsG0780038939.01.T01:CDS
AATATACTCAATAATCACAA+GGG	0.685010	7:+55569220	None:intergenic
ACAGATTGTTCTCAAGTTGA+AGG	0.510826	7:-55569363	MsG0780038939.01.T01:CDS
AGGAAGCCCATTTGTGTGCA+GGG	0.580217	7:-55569387	MsG0780038939.01.T01:CDS
AGGAGAGGAGATTGGAATTG+TGG	0.454908	7:-55568772	MsG0780038939.01.T01:CDS
AGTGTCCCAAACTTTCCAAG+TGG	0.647650	7:-55568671	MsG0780038939.01.T01:CDS
ATCACAAGGGACTCTGATAT+AGG	0.465216	7:+55569233	None:intergenic
ATCTGTACCCTGCACACAAA+TGG	0.352526	7:+55569380	None:intergenic
CAAGAAGAAGTGAAGCTATT+GGG	0.403464	7:-55569416	MsG0780038939.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGTTATGTCTTGAATCAAA+GGG	+	Chr7:55569276-55569295	None:intergenic	30.0%
CTTTGATTCAAGACATAACA+GGG	-	Chr7:55569275-55569294	MsG0780038939.01.T01:CDS	30.0%
TATAAACTGGGTTATACTTG+AGG	+	Chr7:55568706-55568725	None:intergenic	30.0%
TTGAGTATATTGATGAGACT+TGG	-	Chr7:55568783-55568802	MsG0780038939.01.T01:CDS	30.0%
TTTATGTTTGTGCAGTGTAA+TGG	+	Chr7:55568990-55569009	None:intergenic	30.0%
CAAGAAGAAGTGAAGCTATT+GGG	-	Chr7:55568575-55568594	MsG0780038939.01.T01:CDS	35.0%
CCTGTTATGTCTTGAATCAA+AGG	+	Chr7:55569277-55569296	None:intergenic	35.0%
CCTTTGATTCAAGACATAAC+AGG	-	Chr7:55569274-55569293	MsG0780038939.01.T01:CDS	35.0%
GAATATTGAAGGAACGATTG+AGG	-	Chr7:55569153-55569172	MsG0780038939.01.T01:CDS	35.0%
TCAAGAAGAAGTGAAGCTAT+TGG	-	Chr7:55568574-55568593	MsG0780038939.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	55568563	55569450	55568563	ID=MsG0780038939.01;Name=MsG0780038939.01
Chr7	mRNA	55568563	55569450	55568563	ID=MsG0780038939.01.T01;Parent=MsG0780038939.01;Name=MsG0780038939.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|0\|0\|1\|1\|1\|2\|0\|225
Chr7	exon	55569130	55569450	55569130	ID=MsG0780038939.01.T01:exon:7790;Parent=MsG0780038939.01.T01
Chr7	exon	55568563	55568919	55568563	ID=MsG0780038939.01.T01:exon:7789;Parent=MsG0780038939.01.T01
Chr7	CDS	55569130	55569450	55569130	ID=MsG0780038939.01.T01:cds;Parent=MsG0780038939.01.T01
Chr7	CDS	55568563	55568919	55568563	ID=MsG0780038939.01.T01:cds;Parent=MsG0780038939.01.T01

Gene Sequence

>MsG0780038939.01.T01

ATGGCTACAAATCAAGAAGAAGTGAAGCTATTGGGAGCTATAGGAAGCCCATTTGTGTGCAGGGTACAGATTGTTCTCAAGTTGAAGGGAATTGAATATGAATTTCTTGAAGAAAATATGGCCAACAAAAGTGAACTTCTCCTCAAGTATAACCCAGTTTATAAAAAGATTCCAGTTTTTGTTCATAATGAAAAGCCTATATCAGAGTCCCTTGTGATTATTGAGTATATTGATGAGACTTGGAAACAAAATCCAATCTTGCCTTCTGAACCATACCAAAGAGCCTTGGCTCGATTTTGGTCTAACTTCATCGACGACAAGATCATAGCTGCTTCAATTAAAGCTGTCCATACCGTTGATGATGAGAAAGAGCGCGAGAAGAATATTGAAGGAACGATTGAGGCTCTACAGATTCTTGAGAATGAGTTGAAGGACAAGTTCTTTGGAGGAGAGGAGATTGGAATTGTGGATATTGCAGCTGTGTACATAGCTTTTTGGATCCCTTTGATTCAAGACATAACAGGGTTGCAATTGTTGAATGCTGAAAAGTGTCCCAAACTTTCCAAGTGGAGCCAAGAATTTCTCAACCATCCTGTTGTTAAGGAAAATATGCCTCCTAGAGAACCTCTTTTTGCCTACTTCAAAGCTCACTATGAGAGCCTCTTTGCTTCAAAATAG

Protein sequence

>MsG0780038939.01.T01

MATNQEEVKLLGAIGSPFVCRVQIVLKLKGIEYEFLEENMANKSELLLKYNPVYKKIPVFVHNEKPISESLVIIEYIDETWKQNPILPSEPYQRALARFWSNFIDDKIIAASIKAVHTVDDEKEREKNIEGTIEALQILENELKDKFFGGEEIGIVDIAAVYIAFWIPLIQDITGLQLLNAEKCPKLSKWSQEFLNHPVVKENMPPREPLFAYFKAHYESLFASK*