AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038924.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038924.01.T01 MTR_7g065270 91.518 224 19 0 1 224 1 224 5.60e-152 421
MsG0780038924.01.T01 MTR_7g065290 87.946 224 27 0 1 224 1 224 6.08e-145 403
MsG0780038924.01.T01 MTR_7g065265 88.393 224 26 0 1 224 1 224 2.73e-144 402
MsG0780038924.01.T01 MTR_7g065590 75.446 224 55 0 1 224 1 224 1.91e-123 349
MsG0780038924.01.T01 MTR_7g065600 73.661 224 59 0 1 224 1 224 1.95e-122 346
MsG0780038924.01.T01 MTR_7g065230 75.446 224 50 1 1 224 1 219 2.86e-121 343
MsG0780038924.01.T01 MTR_7g065260 73.333 225 59 1 1 224 8 232 1.54e-108 311
MsG0780038924.01.T01 MTR_7g065720 66.667 225 74 1 1 224 1 225 1.23e-106 306
MsG0780038924.01.T01 MTR_7g065660 64.126 223 80 0 1 223 1 223 4.31e-105 303
MsG0780038924.01.T01 MTR_7g065750 65.753 219 74 1 1 218 1 219 2.39e-102 296
MsG0780038924.01.T01 MTR_7g065630 65.297 219 72 1 1 219 19 233 5.83e-100 290
MsG0780038924.01.T01 MTR_7g065740 63.014 219 80 1 1 218 1 219 9.05e-99 286
MsG0780038924.01.T01 MTR_4g019790 62.212 217 82 0 1 217 1 217 2.70e-98 285
MsG0780038924.01.T01 MTR_7g065640 58.296 223 75 1 1 223 1 205 2.83e-92 270
MsG0780038924.01.T01 MTR_7g065710 61.836 207 75 1 8 214 5 207 3.36e-89 262
MsG0780038924.01.T01 MTR_4g019780 58.140 215 88 2 2 215 3 216 3.52e-88 259
MsG0780038924.01.T01 MTR_7g065680 62.037 216 78 1 1 216 1 212 3.32e-83 247
MsG0780038924.01.T01 MTR_7g065700 62.150 214 77 1 1 214 1 210 2.25e-82 245
MsG0780038924.01.T01 MTR_6g080440 47.115 208 108 2 7 213 3 209 2.54e-62 194
MsG0780038924.01.T01 MTR_1g090150 45.794 214 111 3 6 216 2 213 3.02e-61 191
MsG0780038924.01.T01 MTR_3g099757 46.262 214 109 3 5 215 3 213 9.07e-57 180
MsG0780038924.01.T01 MTR_8g087425 41.364 220 127 2 4 222 2 220 1.27e-55 177
MsG0780038924.01.T01 MTR_5g040430 41.441 222 122 3 1 215 1 221 1.23e-53 172
MsG0780038924.01.T01 MTR_1g115195 42.202 218 123 2 7 221 3 220 9.18e-53 169
MsG0780038924.01.T01 MTR_8g087410 40.271 221 129 3 1 220 1 219 2.05e-50 164
MsG0780038924.01.T01 MTR_1g090070 41.176 221 125 3 7 223 9 228 4.81e-50 163
MsG0780038924.01.T01 MTR_5g037380 42.601 223 118 3 1 215 1 221 9.05e-50 162
MsG0780038924.01.T01 MTR_8g061950 42.922 219 117 3 5 215 3 221 1.20e-49 162
MsG0780038924.01.T01 MTR_1g090060 41.627 209 118 2 7 212 3 210 2.88e-49 160
MsG0780038924.01.T01 MTR_1g090090 41.905 210 118 2 7 213 3 211 3.26e-48 158
MsG0780038924.01.T01 MTR_4g059730 40.654 214 121 4 6 215 3 214 3.26e-48 158
MsG0780038924.01.T01 MTR_1g090100 40.654 214 123 2 8 218 3 215 1.66e-46 154
MsG0780038924.01.T01 MTR_3g467420 41.063 207 117 5 16 220 18 221 1.47e-43 146
MsG0780038924.01.T01 MTR_2g070130 40.686 204 116 5 6 207 3 203 6.65e-43 144
MsG0780038924.01.T01 MTR_2g070150 39.216 204 119 5 6 207 3 203 8.39e-42 141
MsG0780038924.01.T01 MTR_2g070140 40.000 195 112 5 20 212 1 192 4.69e-41 139
MsG0780038924.01.T01 MTR_2g070200 40.686 204 117 4 6 207 3 204 9.61e-41 139
MsG0780038924.01.T01 MTR_3g467430 37.900 219 131 5 4 220 6 221 1.16e-40 139
MsG0780038924.01.T01 MTR_2g070180 39.175 194 113 5 16 207 13 203 4.72e-40 137
MsG0780038924.01.T01 MTR_4g124130 44.444 189 99 5 6 191 3 188 8.24e-40 136
MsG0780038924.01.T01 MTR_8g056940 40.385 208 116 5 16 218 13 217 2.68e-39 135
MsG0780038924.01.T01 MTR_5g076900 39.906 213 121 5 3 212 2 210 1.22e-38 133
MsG0780038924.01.T01 MTR_2g070210 38.679 212 121 7 6 212 3 210 3.28e-37 130
MsG0780038924.01.T01 MTR_2g070120 34.703 219 138 4 6 222 3 218 7.42e-37 129
MsG0780038924.01.T01 MTR_2g070060 36.538 208 127 4 7 212 4 208 7.98e-35 123
MsG0780038924.01.T01 MTR_2g070070 38.500 200 118 4 7 204 4 200 3.32e-34 122
MsG0780038924.01.T01 MTR_0186s0030 46.923 130 67 2 16 144 13 141 1.21e-31 113
MsG0780038924.01.T01 MTR_2g070110 38.000 200 118 4 7 204 4 199 3.71e-29 108
MsG0780038924.01.T01 MTR_2g072120 48.485 66 33 1 51 115 2 67 3.86e-15 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038924.01.T01 AT3G09270 52.752 218 99 4 3 217 2 218 2.06e-75 227
MsG0780038924.01.T01 AT2G29420 46.544 217 114 2 3 218 5 220 1.78e-68 210
MsG0780038924.01.T01 AT2G29490 47.847 209 106 3 1 207 1 208 8.56e-60 187
MsG0780038924.01.T01 AT2G29480 47.368 209 107 3 1 207 1 208 9.98e-58 182
MsG0780038924.01.T01 AT2G29450 47.343 207 107 2 3 207 2 208 1.58e-57 182
MsG0780038924.01.T01 AT2G29460 45.455 209 111 3 1 207 1 208 1.22e-54 174
MsG0780038924.01.T01 AT2G29470 45.024 211 110 5 1 207 1 209 2.76e-53 171
MsG0780038924.01.T01 AT2G29440 44.498 209 112 4 1 207 1 207 1.63e-52 169
MsG0780038924.01.T01 AT1G10370 41.176 221 121 3 1 214 1 219 3.38e-49 160
MsG0780038924.01.T01 AT1G59700 44.495 218 113 4 5 214 4 221 1.74e-48 159
MsG0780038924.01.T01 AT1G27130 40.000 225 126 4 1 217 1 224 3.94e-48 158
MsG0780038924.01.T01 AT1G59670 42.308 208 112 3 5 204 4 211 1.99e-46 154
MsG0780038924.01.T01 AT5G62480 40.367 218 119 4 8 215 9 225 2.32e-46 154
MsG0780038924.01.T01 AT1G69930 36.937 222 134 2 2 217 7 228 2.77e-46 153
MsG0780038924.01.T01 AT1G10360 37.864 206 121 2 6 204 4 209 1.41e-44 149
MsG0780038924.01.T01 AT1G27140 36.957 230 135 4 1 221 1 229 1.47e-43 147
MsG0780038924.01.T01 AT1G69920 37.445 227 132 4 1 217 26 252 4.37e-42 143
MsG0780038924.01.T01 AT1G78340 42.791 215 115 6 6 216 3 213 4.48e-42 142
MsG0780038924.01.T01 AT1G78370 40.686 204 115 6 16 217 13 212 6.56e-42 142
MsG0780038924.01.T01 AT1G74590 35.455 220 135 3 1 214 1 219 1.04e-41 142
MsG0780038924.01.T01 AT1G78320 40.385 208 119 4 5 210 2 206 1.26e-41 141
MsG0780038924.01.T01 AT1G53680 40.000 210 121 4 1 207 1 208 1.61e-41 141
MsG0780038924.01.T01 AT1G78380 41.827 208 116 5 7 212 4 208 2.76e-41 140
MsG0780038924.01.T01 AT1G17170 39.437 213 123 5 6 216 3 211 7.63e-41 139
MsG0780038924.01.T01 AT1G17180 39.234 209 122 5 6 212 3 208 9.66e-38 131
MsG0780038924.01.T01 AT3G43800 38.647 207 118 6 4 204 2 205 2.09e-37 130
MsG0780038924.01.T01 AT1G78360 39.234 209 121 6 7 212 4 209 3.00e-35 125
MsG0780038924.01.T01 AT1G17190 42.697 178 97 5 16 191 14 188 6.78e-35 124
MsG0780038924.01.T01 AT5G62480 32.719 217 111 4 8 215 9 199 1.78e-30 112
MsG0780038924.01.T01 AT5G62480 32.719 217 110 4 8 215 9 198 3.63e-30 111
MsG0780038924.01.T01 AT1G78320 33.495 206 107 4 6 210 3 179 2.29e-26 101
MsG0780038924.01.T01 AT2G02380 26.977 215 138 6 5 207 9 216 1.51e-13 67.8

Find 42 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTGTCATCGATGAAAT+TGG 0.228106 7:+55407231 None:intergenic
GCTCGTTATGAAGATCATTT+TGG 0.234577 7:-55405656 MsG0780038924.01.T01:CDS
AATTTCCCAAGCTTTATAAT+TGG 0.252954 7:-55405754 MsG0780038924.01.T01:CDS
ACTGGAACTTTCTTATAAAC+AGG 0.281510 7:+55407379 None:intergenic
TTGGGTGATTGTTGAATTCT+TGG 0.291920 7:+55405729 None:intergenic
AGTCCAAATGCTTCTTCTAT+AGG 0.292632 7:+55405797 None:intergenic
GAGCTCAAAGACAAATTCTT+TGG 0.309252 7:-55405878 MsG0780038924.01.T01:CDS
CTCTACGATGGCATCAAATA+AGG 0.319615 7:-55407539 None:intergenic
AAATATGAGAACGAAGAGTT+TGG 0.334423 7:-55407433 MsG0780038924.01.T01:CDS
CAACAATCACCCAATTGTTA+AGG 0.381761 7:-55405720 MsG0780038924.01.T01:CDS
TGGCTCCAATTATAAAGCTT+GGG 0.388747 7:+55405749 None:intergenic
TTGGCTCCAATTATAAAGCT+TGG 0.404392 7:+55405748 None:intergenic
TTCTTTGGTGGGGAGGAGAT+TGG 0.431190 7:-55405863 MsG0780038924.01.T01:CDS
GCCTCCTAGAGAGATCCTTT+TGG 0.436004 7:-55405690 MsG0780038924.01.T01:CDS
TCTCCTATAGAAGAAGCATT+TGG 0.446494 7:-55405800 MsG0780038924.01.T01:CDS
AATATGAGAACGAAGAGTTT+GGG 0.460478 7:-55407432 MsG0780038924.01.T01:CDS
GGAAATAGCTCTAAAGTTGA+AGG 0.475384 7:-55407467 MsG0780038924.01.T01:CDS
CTCAAAGACAAATTCTTTGG+TGG 0.503966 7:-55405875 MsG0780038924.01.T01:CDS
TGGGAAGTCCATGGTCAACC+AGG 0.514711 7:-55407492 MsG0780038924.01.T01:CDS
AATCACAAATGACTCTGAGA+TGG 0.521673 7:+55407336 None:intergenic
TCAAAGACAAATTCTTTGGT+GGG 0.523453 7:-55405874 MsG0780038924.01.T01:CDS
TTGAATACATCGATGAGACT+TGG 0.524005 7:-55407312 MsG0780038924.01.T01:CDS
AGAACGTGAGAAGAGTATTG+AGG 0.526929 7:-55405933 MsG0780038924.01.T01:CDS
ATCACAAATGACTCTGAGAT+GGG 0.538274 7:+55407337 None:intergenic
TTGGAATTGTGGGAAGTCCA+TGG 0.541617 7:-55407501 MsG0780038924.01.T01:CDS
ATCAAATAAGGAAGAGGTGA+AGG 0.549693 7:-55407527 MsG0780038924.01.T01:CDS
CTGGAACTTTCTTATAAACA+GGG 0.551834 7:+55407380 None:intergenic
GAGCTTTGTAGAATGCCAAA+AGG 0.555972 7:+55405675 None:intergenic
GAGTATTGAGGAAACAAAAG+AGG 0.559224 7:-55405921 MsG0780038924.01.T01:CDS
AATGCCAAAAGGATCTCTCT+AGG 0.560384 7:+55405686 None:intergenic
CAAAGACAAATTCTTTGGTG+GGG 0.574827 7:-55405873 MsG0780038924.01.T01:CDS
AGACAAATTCTTTGGTGGGG+AGG 0.574875 7:-55405870 MsG0780038924.01.T01:CDS
GATGGCATCAAATAAGGAAG+AGG 0.575114 7:-55407533 MsG0780038924.01.T01:CDS
ATTTCCACCCTGGTTGACCA+TGG 0.579102 7:+55407484 None:intergenic
ACTGAAATTGTTCACTAGTG+AGG 0.598807 7:-55405777 MsG0780038924.01.T01:CDS
CTTTAGAGCTATTTCCACCC+TGG 0.599029 7:+55407474 None:intergenic
GAAATAGCTCTAAAGTTGAA+GGG 0.613468 7:-55407466 MsG0780038924.01.T01:CDS
GTCCAATTTCATCGATGACA+AGG 0.621507 7:-55407233 MsG0780038924.01.T01:intron
GGGAAGTCCATGGTCAACCA+GGG 0.664739 7:-55407491 MsG0780038924.01.T01:CDS
AAGTCCATGGTCAACCAGGG+TGG 0.678748 7:-55407488 MsG0780038924.01.T01:CDS
ATTGGACCAGAAACGAGCCA+AGG 0.680795 7:+55407249 None:intergenic
GCCAAAAGGATCTCTCTAGG+AGG 0.687746 7:+55405689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTA+TGG + Chr7:55407083-55407102 None:intergenic 0.0%
!! AAAACAAATTAATTAACTTA+TGG - Chr7:55406804-55406823 MsG0780038924.01.T01:intron 10.0%
!! TACTAATTAAATTATGTTAT+TGG + Chr7:55406239-55406258 None:intergenic 10.0%
!!! ATTAAATTATGTTGTATTTT+AGG + Chr7:55406095-55406114 None:intergenic 10.0%
!!! TAATTAATTTGTTTTTGTAT+AGG + Chr7:55406799-55406818 None:intergenic 10.0%
!! AAATTATCCTTATTAACTAT+TGG - Chr7:55406530-55406549 MsG0780038924.01.T01:intron 15.0%
!! AATAATTAAAAGAAAGAGAA+TGG - Chr7:55406497-55406516 MsG0780038924.01.T01:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + Chr7:55406531-55406550 None:intergenic 15.0%
!! TATTAAATTATCCATGTTAA+CGG + Chr7:55407158-55407177 None:intergenic 15.0%
!! TTATCATTATGAATAAAAAC+TGG + Chr7:55405820-55405839 None:intergenic 15.0%
!!! AATTAAATTACGTTTTCTTT+TGG + Chr7:55406372-55406391 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - Chr7:55406554-55406573 MsG0780038924.01.T01:intron 15.0%
!! AAACTAACCAATAGTTAATA+AGG + Chr7:55406540-55406559 None:intergenic 20.0%
!! ACTTTAGTTAGCATTAAATA+TGG - Chr7:55406027-55406046 MsG0780038924.01.T01:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - Chr7:55406617-55406636 MsG0780038924.01.T01:intron 20.0%
!! TATTTAATGCTAACTAAAGT+TGG + Chr7:55406027-55406046 None:intergenic 20.0%
!!! AGCATTAAATATGGTTTTTT+AGG - Chr7:55406036-55406055 MsG0780038924.01.T01:intron 20.0%
!!! ATTTTTTTTTACCGTTAACA+TGG - Chr7:55407144-55407163 MsG0780038924.01.T01:intron 20.0%
!!! GCATTAAATATGGTTTTTTA+GGG - Chr7:55406037-55406056 MsG0780038924.01.T01:intron 20.0%
!!! GTAGCATTAAATATGTTTTA+GGG - Chr7:55406059-55406078 MsG0780038924.01.T01:intron 20.0%
!!! TAGCATTAAATATGTTTTAG+GGG - Chr7:55406060-55406079 MsG0780038924.01.T01:intron 20.0%
! ACACAAAGAAAAATTGAAGA+GGG + Chr7:55405981-55406000 None:intergenic 25.0%
! GACAATGTATTATATATGCA+AGG - Chr7:55407038-55407057 MsG0780038924.01.T01:intron 25.0%
! TAAAGTTGGATATATGAACT+TGG + Chr7:55406013-55406032 None:intergenic 25.0%
! TACACAAAGAAAAATTGAAG+AGG + Chr7:55405982-55406001 None:intergenic 25.0%
! TCCTATTATAATCAAGGTAT+TGG - Chr7:55406292-55406311 MsG0780038924.01.T01:intron 25.0%
!! AATTTCCCAAGCTTTATAAT+TGG - Chr7:55407424-55407443 MsG0780038924.01.T01:CDS 25.0%
!! CCTATTATAATCAAGGTATT+GGG - Chr7:55406293-55406312 MsG0780038924.01.T01:intron 25.0%
!! GCAATTTTTCCTTAACAATT+GGG + Chr7:55407470-55407489 None:intergenic 25.0%
!! GGTAGCATTAAATATGTTTT+AGG - Chr7:55406058-55406077 MsG0780038924.01.T01:intron 25.0%
!! TTAATAACTACCTTAGTTTG+TGG - Chr7:55407172-55407191 MsG0780038924.01.T01:intron 25.0%
!!! TAATAACTACCTTAGTTTGT+GGG - Chr7:55407173-55407192 MsG0780038924.01.T01:intron 25.0%
AAATATGAGAACGAAGAGTT+TGG - Chr7:55405745-55405764 MsG0780038924.01.T01:CDS 30.0%
AATATGAGAACGAAGAGTTT+GGG - Chr7:55405746-55405765 MsG0780038924.01.T01:CDS 30.0%
ACTGGAACTTTCTTATAAAC+AGG + Chr7:55405802-55405821 None:intergenic 30.0%
ATTCTCTCCGATATCAATTT+AGG + Chr7:55406145-55406164 None:intergenic 30.0%
CACAAAGAAAAATTGAAGAG+GGG + Chr7:55405980-55405999 None:intergenic 30.0%
CCCAATACCTTGATTATAAT+AGG + Chr7:55406296-55406315 None:intergenic 30.0%
CTGGAACTTTCTTATAAACA+GGG + Chr7:55405801-55405820 None:intergenic 30.0%
GATATATGAACTTGGAATAG+AGG + Chr7:55406005-55406024 None:intergenic 30.0%
GATCTCTCCTATTATAATCA+AGG - Chr7:55406286-55406305 MsG0780038924.01.T01:intron 30.0%
GCACATAGTAGTATAAGTTA+AGG + Chr7:55406987-55407006 None:intergenic 30.0%
TAGTCCACCTAAATTGATAT+CGG - Chr7:55406135-55406154 MsG0780038924.01.T01:intron 30.0%
TCAAAGACAAATTCTTTGGT+GGG - Chr7:55407304-55407323 MsG0780038924.01.T01:CDS 30.0%
TGTATTATATATGCAAGGTC+CGG - Chr7:55407043-55407062 MsG0780038924.01.T01:intron 30.0%
TTCAAATTCAGTTGGATATG+CGG - Chr7:55406316-55406335 MsG0780038924.01.T01:intron 30.0%
TTTGTATAGGAAGTCTTCTA+TGG + Chr7:55406786-55406805 None:intergenic 30.0%
! GGCAATTTTTCCTTAACAAT+TGG + Chr7:55407471-55407490 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + Chr7:55406448-55406467 None:intergenic 30.0%
!! GAAATAGCTCTAAAGTTGAA+GGG - Chr7:55405712-55405731 MsG0780038924.01.T01:CDS 30.0%
!!! AAGCGACACTTATTTTGAAA+CGG - Chr7:55406683-55406702 MsG0780038924.01.T01:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - Chr7:55406449-55406468 MsG0780038924.01.T01:intron 30.0%
ACTGAAATTGTTCACTAGTG+AGG - Chr7:55407401-55407420 MsG0780038924.01.T01:CDS 35.0%
AGTCCAAATGCTTCTTCTAT+AGG + Chr7:55407384-55407403 None:intergenic 35.0%
ATATCGGAGAGAATCTAACA+TGG - Chr7:55406151-55406170 MsG0780038924.01.T01:intron 35.0%
ATCAAATAAGGAAGAGGTGA+AGG - Chr7:55405651-55405670 MsG0780038924.01.T01:CDS 35.0%
CAAAGACAAATTCTTTGGTG+GGG - Chr7:55407305-55407324 MsG0780038924.01.T01:CDS 35.0%
CAACAATCACCCAATTGTTA+AGG - Chr7:55407458-55407477 MsG0780038924.01.T01:CDS 35.0%
CTATTTGCCATAATTCAAGG+AGG + Chr7:55406893-55406912 None:intergenic 35.0%
CTCAAAGACAAATTCTTTGG+TGG - Chr7:55407303-55407322 MsG0780038924.01.T01:CDS 35.0%
GAGCTCAAAGACAAATTCTT+TGG - Chr7:55407300-55407319 MsG0780038924.01.T01:CDS 35.0%
GCACTATTTGCCATAATTCA+AGG + Chr7:55406896-55406915 None:intergenic 35.0%
GGCAAATAGTGCATTGTAAT+TGG - Chr7:55406904-55406923 MsG0780038924.01.T01:intron 35.0%
GTAGTGTGCTGAGTATTAAT+TGG - Chr7:55406579-55406598 MsG0780038924.01.T01:intron 35.0%
GTATTATATATGCAAGGTCC+GGG - Chr7:55407044-55407063 MsG0780038924.01.T01:intron 35.0%
GTATTGGGTTCAAATTCAGT+TGG - Chr7:55406308-55406327 MsG0780038924.01.T01:intron 35.0%
TACCTTGTCATCGATGAAAT+TGG + Chr7:55405950-55405969 None:intergenic 35.0%
TACGTACATCATTCATACAC+TGG + Chr7:55407200-55407219 None:intergenic 35.0%
TATCGGAGAGAATCTAACAT+GGG - Chr7:55406152-55406171 MsG0780038924.01.T01:intron 35.0%
TATTATATATGCAAGGTCCG+GGG - Chr7:55407045-55407064 MsG0780038924.01.T01:intron 35.0%
TGGCTCCAATTATAAAGCTT+GGG + Chr7:55407432-55407451 None:intergenic 35.0%
TGTGCTGAGTATTAATTGGA+GGG - Chr7:55406583-55406602 MsG0780038924.01.T01:intron 35.0%
TGTTATTGGTCCATTTGAGT+TGG + Chr7:55406225-55406244 None:intergenic 35.0%
TTGAATACATCGATGAGACT+TGG - Chr7:55405866-55405885 MsG0780038924.01.T01:CDS 35.0%
TTGGCTCCAATTATAAAGCT+TGG + Chr7:55407433-55407452 None:intergenic 35.0%
TTGGGTGATTGTTGAATTCT+TGG + Chr7:55407452-55407471 None:intergenic 35.0%
! AATCACAAATGACTCTGAGA+TGG + Chr7:55405845-55405864 None:intergenic 35.0%
! CTGCTGTGATCATATCTTTT+TGG - Chr7:55407352-55407371 MsG0780038924.01.T01:CDS 35.0%
! GCTCGTTATGAAGATCATTT+TGG - Chr7:55407522-55407541 MsG0780038924.01.T01:CDS 35.0%
!! ATCACAAATGACTCTGAGAT+GGG + Chr7:55405844-55405863 None:intergenic 35.0%
!! GAGTATTGAGGAAACAAAAG+AGG - Chr7:55407257-55407276 MsG0780038924.01.T01:CDS 35.0%
!! GGAAATAGCTCTAAAGTTGA+AGG - Chr7:55405711-55405730 MsG0780038924.01.T01:CDS 35.0%
!! TCTCCTATAGAAGAAGCATT+TGG - Chr7:55407378-55407397 MsG0780038924.01.T01:CDS 35.0%
!!! GACACTTATTTTGAAACGGA+GGG - Chr7:55406687-55406706 MsG0780038924.01.T01:intron 35.0%
!!! GTGAAGGTTTTTGGAATTGT+GGG - Chr7:55405667-55405686 MsG0780038924.01.T01:CDS 35.0%
AACCACACCTCCTTGAATTA+TGG - Chr7:55406883-55406902 MsG0780038924.01.T01:intron 40.0%
AATGCCAAAAGGATCTCTCT+AGG + Chr7:55407495-55407514 None:intergenic 40.0%
CTCTCCGATATCAATTTAGG+TGG + Chr7:55406142-55406161 None:intergenic 40.0%
GTCCAATTTCATCGATGACA+AGG - Chr7:55405945-55405964 MsG0780038924.01.T01:CDS 40.0%
GTGGCATAAGCTTGAGATTT+GGG + Chr7:55406198-55406217 None:intergenic 40.0%
GTGTGCTGAGTATTAATTGG+AGG - Chr7:55406582-55406601 MsG0780038924.01.T01:intron 40.0%
TGACCCTTACAAAAAAGCCT+TGG - Chr7:55405912-55405931 MsG0780038924.01.T01:CDS 40.0%
! AAGGAAGAGGTGAAGGTTTT+TGG - Chr7:55405658-55405677 MsG0780038924.01.T01:CDS 40.0%
! AGGAGGTGTGGTTGAAAAAT+AGG + Chr7:55406876-55406895 None:intergenic 40.0%
! GAGCTTTGTAGAATGCCAAA+AGG + Chr7:55407506-55407525 None:intergenic 40.0%
!! AGAACGTGAGAAGAGTATTG+AGG - Chr7:55407245-55407264 MsG0780038924.01.T01:CDS 40.0%
!!! CGACACTTATTTTGAAACGG+AGG - Chr7:55406686-55406705 MsG0780038924.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr7:55406444-55406463 None:intergenic 40.0%
!!! GAGCCAAGGCTTTTTTGTAA+GGG + Chr7:55405918-55405937 None:intergenic 40.0%
!!! GCTTTTTTGTAAGGGTCAGA+AGG + Chr7:55405910-55405929 None:intergenic 40.0%
!!! GGTGAAGGTTTTTGGAATTG+TGG - Chr7:55405666-55405685 MsG0780038924.01.T01:CDS 40.0%
AATCTCAAGCTTATGCCACC+TGG - Chr7:55406199-55406218 MsG0780038924.01.T01:intron 45.0%
AGACAAATTCTTTGGTGGGG+AGG - Chr7:55407308-55407327 MsG0780038924.01.T01:CDS 45.0%
GAATCTAACATGGGACCTTG+AGG - Chr7:55406161-55406180 MsG0780038924.01.T01:intron 45.0%
GGTGGCATAAGCTTGAGATT+TGG + Chr7:55406199-55406218 None:intergenic 45.0%
TACACTGGTCCCACAAACTA+AGG + Chr7:55407185-55407204 None:intergenic 45.0%
TATGGCTGAGATTTGAACCC+CGG + Chr7:55407065-55407084 None:intergenic 45.0%
TGAGCTTAGCTCAACTGGTA+AGG - Chr7:55407016-55407035 MsG0780038924.01.T01:intron 45.0%
TGCCATAATTCAAGGAGGTG+TGG + Chr7:55406888-55406907 None:intergenic 45.0%
TTGGAATTGTGGGAAGTCCA+TGG - Chr7:55405677-55405696 MsG0780038924.01.T01:CDS 45.0%
! AAAAAGCCTTGGCTCGTTTC+TGG - Chr7:55405923-55405942 MsG0780038924.01.T01:CDS 45.0%
!! CTTTAGAGCTATTTCCACCC+TGG + Chr7:55405707-55405726 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr7:55406445-55406464 None:intergenic 45.0%
!!! CGAGCCAAGGCTTTTTTGTA+AGG + Chr7:55405919-55405938 None:intergenic 45.0%
ATTGGACCAGAAACGAGCCA+AGG + Chr7:55405932-55405951 None:intergenic 50.0%
ATTTCCACCCTGGTTGACCA+TGG + Chr7:55405697-55405716 None:intergenic 50.0%
GCCAAAAGGATCTCTCTAGG+AGG + Chr7:55407492-55407511 None:intergenic 50.0%
TCTAACATGGGACCTTGAGG+AGG - Chr7:55406164-55406183 MsG0780038924.01.T01:intron 50.0%
TTCTTTGGTGGGGAGGAGAT+TGG - Chr7:55407315-55407334 MsG0780038924.01.T01:CDS 50.0%
! GCCTCCTAGAGAGATCCTTT+TGG - Chr7:55407488-55407507 MsG0780038924.01.T01:CDS 50.0%
!! TTGGTCCATTTGAGTTGGCC+AGG + Chr7:55406220-55406239 None:intergenic 50.0%
AAGTCCATGGTCAACCAGGG+TGG - Chr7:55405690-55405709 MsG0780038924.01.T01:CDS 55.0%
CCAGTTGAGCTAAGCTCACG+AGG + Chr7:55407014-55407033 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAAC+TGG - Chr7:55407011-55407030 MsG0780038924.01.T01:intron 55.0%
GGGAAGTCCATGGTCAACCA+GGG - Chr7:55405687-55405706 MsG0780038924.01.T01:CDS 55.0%
TGCCACCTGGCCAACTCAAA+TGG - Chr7:55406212-55406231 MsG0780038924.01.T01:intron 55.0%
TGGGAAGTCCATGGTCAACC+AGG - Chr7:55405686-55405705 MsG0780038924.01.T01:CDS 55.0%
!! GTCCATTTGAGTTGGCCAGG+TGG + Chr7:55406217-55406236 None:intergenic 55.0%
! TGGGAGTGTGCTCCTCCTCA+AGG + Chr7:55406179-55406198 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 55405646 55407554 55405646 ID=MsG0780038924.01;Name=MsG0780038924.01
Chr7 mRNA 55405646 55407554 55405646 ID=MsG0780038924.01.T01;Parent=MsG0780038924.01;Name=MsG0780038924.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|224
Chr7 exon 55407234 55407554 55407234 ID=MsG0780038924.01.T01:exon:15450;Parent=MsG0780038924.01.T01
Chr7 exon 55405646 55405999 55405646 ID=MsG0780038924.01.T01:exon:15449;Parent=MsG0780038924.01.T01
Chr7 CDS 55407234 55407554 55407234 ID=MsG0780038924.01.T01:cds;Parent=MsG0780038924.01.T01
Chr7 CDS 55405646 55405999 55405646 ID=MsG0780038924.01.T01:cds;Parent=MsG0780038924.01.T01
Gene Sequence

>MsG0780038924.01.T01

ATGGCATCAAATAAGGAAGAGGTGAAGGTTTTTGGAATTGTGGGAAGTCCATGGTCAACCAGGGTGGAAATAGCTCTAAAGTTGAAGGGAGTTGAATACAAATATGAGAACGAAGAGTTTGGGAACTTGAGTGATACACTCAAAAAATACAACCCTGTTTATAAGAAAGTTCCAGTTTTTATTCATAATGATAAGCCCATCTCAGAGTCATTTGTGATTCTTGAATACATCGATGAGACTTGGAAACAAAATGCAATCTTGCCTTCTGACCCTTACAAAAAAGCCTTGGCTCGTTTCTGGTCCAATTTCATCGATGACAAGTGTATGAATGATGTACGTAAAGTTTGTTTCACTTTTGATGAGAAAGAACGTGAGAAGAGTATTGAGGAAACAAAAGAGGCTCTTCGATTTCTTGAGAATGAGCTCAAAGACAAATTCTTTGGTGGGGAGGAGATTGGTTTTGTTGACATTGCTGCTGTGATCATATCTTTTTGGATCTCTCCTATAGAAGAAGCATTTGGACTGAAATTGTTCACTAGTGAGGAATTTCCCAAGCTTTATAATTGGAGCCAAGAATTCAACAATCACCCAATTGTTAAGGAAAAATTGCCTCCTAGAGAGATCCTTTTGGCATTCTACAAAGCTCGTTATGAAGATCATTTTGGTTCAAAATAG

Protein sequence

>MsG0780038924.01.T01

MASNKEEVKVFGIVGSPWSTRVEIALKLKGVEYKYENEEFGNLSDTLKKYNPVYKKVPVFIHNDKPISESFVILEYIDETWKQNAILPSDPYKKALARFWSNFIDDKCMNDVRKVCFTFDEKEREKSIEETKEALRFLENELKDKFFGGEEIGFVDIAAVIISFWISPIEEAFGLKLFTSEEFPKLYNWSQEFNNHPIVKEKLPPREILLAFYKARYEDHFGSK*