AlfalfaGEDB | MsG0780038924.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038924.01

KEGG: K00799
GO: GO:0005515
PFAM: PF00043 PF02798

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038924.01.T01	XP_003623173.1	91.518	224	19	0	1	224	1	224	4.62E-148	421

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038924.01.T01	P32110	68.889	225	69	1	1	224	1	225	1.07E-107	311

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038924.01.T01	G7L5M4	91.518	224	19	0	1	224	1	224	2.21e-148	421

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0780038924.01	0.824959	6.084432e-54	5.470990e-51
MsG0080047967.01	MsG0780038924.01	-0.800998	1.108040e-48	5.233558e-46
MsG0080048036.01	MsG0780038924.01	0.848606	5.507852e-60	1.016199e-56
MsG0080048301.01	MsG0780038924.01	0.806015	1.010095e-49	5.423808e-47
MsG0080048345.01	MsG0780038924.01	0.854297	1.351794e-61	3.005053e-58
MsG0080048347.01	MsG0780038924.01	0.849998	2.255727e-60	4.355312e-57
MsG0080048348.01	MsG0780038924.01	0.824175	9.308018e-54	8.183104e-51
MsG0080048349.01	MsG0780038924.01	0.807482	4.946803e-50	2.758497e-47
MsG0080048350.01	MsG0780038924.01	0.812528	4.051015e-51	2.581939e-48
MsG0080048352.01	MsG0780038924.01	0.842923	1.921923e-58	2.958243e-55

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PPI

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Gene1	Gene2	Type
MsG0180002272.01	MsG0780038924.01	PPI
MsG0180002273.01	MsG0780038924.01	PPI
MsG0780038924.01	MsG0480018905.01	PPI
MsG0780038924.01	MsG0780038922.01	PPI
MsG0780038924.01	MsG0180002273.01	PPI
MsG0780038924.01	MsG0780038921.01	PPI
MsG0780038924.01	MsG0780038930.01	PPI
MsG0780038924.01	MsG0880047766.01	PPI
MsG0780038924.01	MsG0580025997.01	PPI
MsG0780038924.01	MsG0180002273.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038924.01.T01	MTR_7g065270	91.518	224	19	0	1	224	1	224	5.60e-152	421
MsG0780038924.01.T01	MTR_7g065290	87.946	224	27	0	1	224	1	224	6.08e-145	403
MsG0780038924.01.T01	MTR_7g065265	88.393	224	26	0	1	224	1	224	2.73e-144	402
MsG0780038924.01.T01	MTR_7g065590	75.446	224	55	0	1	224	1	224	1.91e-123	349
MsG0780038924.01.T01	MTR_7g065600	73.661	224	59	0	1	224	1	224	1.95e-122	346
MsG0780038924.01.T01	MTR_7g065230	75.446	224	50	1	1	224	1	219	2.86e-121	343
MsG0780038924.01.T01	MTR_7g065260	73.333	225	59	1	1	224	8	232	1.54e-108	311
MsG0780038924.01.T01	MTR_7g065720	66.667	225	74	1	1	224	1	225	1.23e-106	306
MsG0780038924.01.T01	MTR_7g065660	64.126	223	80	0	1	223	1	223	4.31e-105	303
MsG0780038924.01.T01	MTR_7g065750	65.753	219	74	1	1	218	1	219	2.39e-102	296

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038924.01.T01	AT3G09270	52.752	218	99	4	3	217	2	218	2.06e-75	227
MsG0780038924.01.T01	AT2G29420	46.544	217	114	2	3	218	5	220	1.78e-68	210
MsG0780038924.01.T01	AT2G29490	47.847	209	106	3	1	207	1	208	8.56e-60	187
MsG0780038924.01.T01	AT2G29480	47.368	209	107	3	1	207	1	208	9.98e-58	182
MsG0780038924.01.T01	AT2G29450	47.343	207	107	2	3	207	2	208	1.58e-57	182
MsG0780038924.01.T01	AT2G29460	45.455	209	111	3	1	207	1	208	1.22e-54	174
MsG0780038924.01.T01	AT2G29470	45.024	211	110	5	1	207	1	209	2.76e-53	171
MsG0780038924.01.T01	AT2G29440	44.498	209	112	4	1	207	1	207	1.63e-52	169
MsG0780038924.01.T01	AT1G10370	41.176	221	121	3	1	214	1	219	3.38e-49	160
MsG0780038924.01.T01	AT1G59700	44.495	218	113	4	5	214	4	221	1.74e-48	159

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Find 42 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGAGAACGAAGAGTT+TGG	0.334423	7:-55407433	MsG0780038924.01.T01:CDS
AAGTCCATGGTCAACCAGGG+TGG	0.678748	7:-55407488	MsG0780038924.01.T01:CDS
AATATGAGAACGAAGAGTTT+GGG	0.460478	7:-55407432	MsG0780038924.01.T01:CDS
AATCACAAATGACTCTGAGA+TGG	0.521673	7:+55407336	None:intergenic
AATGCCAAAAGGATCTCTCT+AGG	0.560384	7:+55405686	None:intergenic
AATTTCCCAAGCTTTATAAT+TGG	0.252954	7:-55405754	MsG0780038924.01.T01:CDS
ACTGAAATTGTTCACTAGTG+AGG	0.598807	7:-55405777	MsG0780038924.01.T01:CDS
ACTGGAACTTTCTTATAAAC+AGG	0.281510	7:+55407379	None:intergenic
AGAACGTGAGAAGAGTATTG+AGG	0.526929	7:-55405933	MsG0780038924.01.T01:CDS
AGACAAATTCTTTGGTGGGG+AGG	0.574875	7:-55405870	MsG0780038924.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATGAGAACGAAGAGTT+TGG	-	Chr7:55405745-55405764	MsG0780038924.01.T01:CDS	30.0%
AATATGAGAACGAAGAGTTT+GGG	-	Chr7:55405746-55405765	MsG0780038924.01.T01:CDS	30.0%
ACTGGAACTTTCTTATAAAC+AGG	+	Chr7:55405802-55405821	None:intergenic	30.0%
ATTCTCTCCGATATCAATTT+AGG	+	Chr7:55406145-55406164	None:intergenic	30.0%
CACAAAGAAAAATTGAAGAG+GGG	+	Chr7:55405980-55405999	None:intergenic	30.0%
CCCAATACCTTGATTATAAT+AGG	+	Chr7:55406296-55406315	None:intergenic	30.0%
CTGGAACTTTCTTATAAACA+GGG	+	Chr7:55405801-55405820	None:intergenic	30.0%
GATATATGAACTTGGAATAG+AGG	+	Chr7:55406005-55406024	None:intergenic	30.0%
GATCTCTCCTATTATAATCA+AGG	-	Chr7:55406286-55406305	MsG0780038924.01.T01:intron	30.0%
GCACATAGTAGTATAAGTTA+AGG	+	Chr7:55406987-55407006	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	55405646	55407554	55405646	ID=MsG0780038924.01;Name=MsG0780038924.01
Chr7	mRNA	55405646	55407554	55405646	ID=MsG0780038924.01.T01;Parent=MsG0780038924.01;Name=MsG0780038924.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|2\|0\|224
Chr7	exon	55407234	55407554	55407234	ID=MsG0780038924.01.T01:exon:15450;Parent=MsG0780038924.01.T01
Chr7	exon	55405646	55405999	55405646	ID=MsG0780038924.01.T01:exon:15449;Parent=MsG0780038924.01.T01
Chr7	CDS	55407234	55407554	55407234	ID=MsG0780038924.01.T01:cds;Parent=MsG0780038924.01.T01
Chr7	CDS	55405646	55405999	55405646	ID=MsG0780038924.01.T01:cds;Parent=MsG0780038924.01.T01

Gene Sequence

>MsG0780038924.01.T01

ATGGCATCAAATAAGGAAGAGGTGAAGGTTTTTGGAATTGTGGGAAGTCCATGGTCAACCAGGGTGGAAATAGCTCTAAAGTTGAAGGGAGTTGAATACAAATATGAGAACGAAGAGTTTGGGAACTTGAGTGATACACTCAAAAAATACAACCCTGTTTATAAGAAAGTTCCAGTTTTTATTCATAATGATAAGCCCATCTCAGAGTCATTTGTGATTCTTGAATACATCGATGAGACTTGGAAACAAAATGCAATCTTGCCTTCTGACCCTTACAAAAAAGCCTTGGCTCGTTTCTGGTCCAATTTCATCGATGACAAGTGTATGAATGATGTACGTAAAGTTTGTTTCACTTTTGATGAGAAAGAACGTGAGAAGAGTATTGAGGAAACAAAAGAGGCTCTTCGATTTCTTGAGAATGAGCTCAAAGACAAATTCTTTGGTGGGGAGGAGATTGGTTTTGTTGACATTGCTGCTGTGATCATATCTTTTTGGATCTCTCCTATAGAAGAAGCATTTGGACTGAAATTGTTCACTAGTGAGGAATTTCCCAAGCTTTATAATTGGAGCCAAGAATTCAACAATCACCCAATTGTTAAGGAAAAATTGCCTCCTAGAGAGATCCTTTTGGCATTCTACAAAGCTCGTTATGAAGATCATTTTGGTTCAAAATAG

Protein sequence

>MsG0780038924.01.T01

MASNKEEVKVFGIVGSPWSTRVEIALKLKGVEYKYENEEFGNLSDTLKKYNPVYKKVPVFIHNDKPISESFVILEYIDETWKQNAILPSDPYKKALARFWSNFIDDKCMNDVRKVCFTFDEKEREKSIEETKEALRFLENELKDKFFGGEEIGFVDIAAVIISFWISPIEEAFGLKLFTSEEFPKLYNWSQEFNNHPIVKEKLPPREILLAFYKARYEDHFGSK*