AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039592.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039592.01.T01 MTR_7g062720 61.268 142 55 0 1 142 1 142 5.17e-58 190
MsG0780039592.01.T01 MTR_5g061150 62.992 127 47 0 20 146 10 136 2.81e-47 161
MsG0780039592.01.T01 MTR_3g087960 66.667 111 36 1 342 451 55 165 5.11e-42 149
MsG0780039592.01.T01 MTR_1g036690 61.429 70 21 2 224 293 5 68 8.21e-21 87.0
MsG0780039592.01.T01 MTR_4g037355 36.585 123 29 3 151 231 1 116 4.15e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 86 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAGGCTCTTAATATTTC+TGG 0.080746 7:+66415755 MsG0780039592.01.T01:CDS
TTCGGCATTTAAATGAATTT+TGG 0.166319 7:-66415807 None:intergenic
TTCAATTGCATCTTCCATTT+TGG 0.172212 7:-66418951 None:intergenic
GATATCTGATTAGGTTCTTC+TGG 0.226255 7:-66418750 None:intergenic
CACTTCAAAATAAGGATAAA+AGG 0.234592 7:+66416653 MsG0780039592.01.T01:CDS
CCAACAATCACTTCAAAATA+AGG 0.244294 7:+66416645 MsG0780039592.01.T01:CDS
ATGGTTGTATTTACGTTTAC+AGG 0.245586 7:+66416030 MsG0780039592.01.T01:CDS
TATGGAAGGGGACGTGGTTT+TGG 0.259444 7:+66416420 MsG0780039592.01.T01:CDS
TGCGTTGCTACATTCACTTC+TGG 0.264941 7:-66416318 None:intergenic
AAATTGTCCCAAAGATCTTT+TGG 0.267031 7:-66415953 None:intergenic
TATTTCTGGAAATAATTATC+TGG 0.282933 7:+66415769 MsG0780039592.01.T01:CDS
TAGAAGATCCAAAAGATCTT+TGG 0.283634 7:+66415945 MsG0780039592.01.T01:CDS
TCAAGAACCAAGGTCTATTA+AGG 0.307487 7:+66418905 MsG0780039592.01.T01:CDS
GGTATTTCAGATATCTGATT+AGG 0.322498 7:-66418759 None:intergenic
TATAGGTGGGGTTCTATTCC+TGG 0.331534 7:-66416806 None:intergenic
TAAAGATCAACAAGATGTTT+TGG 0.333763 7:-66416622 None:intergenic
TGAAGATGATTATGGTAATA+TGG 0.338642 7:+66416705 MsG0780039592.01.T01:CDS
CTGGAAATAATTATCTGGCT+TGG 0.347827 7:+66415774 MsG0780039592.01.T01:CDS
TGGAAATAATTATCTGGCTT+GGG 0.361577 7:+66415775 MsG0780039592.01.T01:CDS
CGTGGACGTGGTCGTGGTTA+TGG 0.362984 7:+66416402 MsG0780039592.01.T01:CDS
TTTGGATCAGTGAATGCATT+TGG 0.378242 7:-66418496 None:intergenic
GAAAATGATGAAGATGATTA+TGG 0.394855 7:+66416697 MsG0780039592.01.T01:CDS
TTTGGGACAATTTAAAAGAA+AGG 0.395342 7:+66415963 MsG0780039592.01.T01:CDS
AACCATTCATTACGAGCATT+AGG 0.398670 7:-66416013 None:intergenic
AGAAGATCCAAAAGATCTTT+GGG 0.400056 7:+66415946 MsG0780039592.01.T01:CDS
CGTGGTCGTGGCCATGGTTA+TGG 0.406960 7:+66416366 MsG0780039592.01.T01:CDS
TGCTATCGTTGTGGAGGAAA+AGG 0.414829 7:+66416574 MsG0780039592.01.T01:CDS
CGTGGTTATGGAAGGGGACG+TGG 0.429618 7:+66416414 MsG0780039592.01.T01:CDS
GCGTTGCTACATTCACTTCT+GGG 0.431019 7:-66416317 None:intergenic
CCTTCGTCACCACCTTCATA+AGG 0.433246 7:+66415898 MsG0780039592.01.T01:CDS
TGTTCACATTGTTTAGTTCG+AGG 0.436048 7:-66418427 None:intergenic
ATTAACACTGTGTGGAGAAA+AGG 0.440407 7:+66416105 MsG0780039592.01.T01:CDS
CAAAACAACTGAACAACAAA+AGG 0.454927 7:+66415859 MsG0780039592.01.T01:CDS
CAAACTCGTGGTCGTGGTCG+TGG 0.459890 7:+66416354 MsG0780039592.01.T01:CDS
CTACATTCCTTAATAGACCT+TGG 0.460775 7:-66418912 None:intergenic
AGAAATCAGCAGCATCTAAG+TGG 0.464577 7:-66416735 None:intergenic
AATGGTATCTCCATGCCCTT+CGG 0.470113 7:-66415825 None:intergenic
CGTGGTCGTGGTCGTGGCCA+TGG 0.475975 7:+66416360 MsG0780039592.01.T01:CDS
TCGGTTCCATTGTATTCCAT+TGG 0.477065 7:-66418814 None:intergenic
GTAGCAACGCATGATCACTA+TGG 0.484635 7:+66416330 MsG0780039592.01.T01:CDS
GCAGCAACAATACCGCGAAA+AGG 0.486558 7:+66416189 MsG0780039592.01.T01:CDS
ACTTCAAAATAAGGATAAAA+GGG 0.487291 7:+66416654 MsG0780039592.01.T01:CDS
GCTACATTCACTTCTGGGAA+TGG 0.488554 7:-66416312 None:intergenic
TACATTAGATGCATGAAAAG+TGG 0.490606 7:-66416161 None:intergenic
CAGCAACAATACCGCGAAAA+GGG 0.491478 7:+66416190 MsG0780039592.01.T01:CDS
CATTTAAATGCCGAAGGGCA+TGG 0.494088 7:+66415815 MsG0780039592.01.T01:CDS
AAATGTTGTAAAGATGATAT+TGG 0.500623 7:+66416523 MsG0780039592.01.T01:intron
GACGTGGTCGTGGTTATGGA+AGG 0.501950 7:+66416406 MsG0780039592.01.T01:CDS
GTTGTGGAGGAAAAGGTCAT+TGG 0.504176 7:+66416581 MsG0780039592.01.T01:CDS
TTTATAGGAGCATTAACAGC+TGG 0.506516 7:-66418541 None:intergenic
TTCCTAATGCTCGTAATGAA+TGG 0.506622 7:+66416011 MsG0780039592.01.T01:CDS
TATGGACAAACTCGTGGTCG+TGG 0.513531 7:+66416348 MsG0780039592.01.T01:CDS
AGAGAAAATGCAGCTGAAGA+AGG 0.513775 7:+66418366 MsG0780039592.01.T01:CDS
CATGGAGATACCATTAAAGA+AGG 0.521442 7:+66415833 MsG0780039592.01.T01:CDS
CGTGGACGTGGACGTGGTCG+TGG 0.524981 7:+66416396 MsG0780039592.01.T01:CDS
AAATGTGATAAATGATAATG+AGG 0.528721 7:+66418881 MsG0780039592.01.T01:CDS
CATTAGAGATGAAAATATCC+AGG 0.532865 7:+66416788 MsG0780039592.01.T01:CDS
TCAATAAATTATGTCACCAA+TGG 0.534181 7:+66418798 MsG0780039592.01.T01:CDS
AAAATTCATTTAAATGCCGA+AGG 0.537172 7:+66415809 MsG0780039592.01.T01:CDS
CATGGTTATGGTCGTGGACG+TGG 0.538890 7:+66416378 MsG0780039592.01.T01:CDS
CGTGGCCATGGTTATGGTCG+TGG 0.540024 7:+66416372 MsG0780039592.01.T01:CDS
TTGAAGCGTGGTAGACCAAT+CGG 0.541394 7:+66418616 MsG0780039592.01.T01:CDS
CGTGGACGTGGACGTGGACG+TGG 0.546682 7:+66416390 MsG0780039592.01.T01:CDS
CGTGGTCGTGGTTATGGAAG+GGG 0.551769 7:+66416408 MsG0780039592.01.T01:CDS
TATGGTCGTGGACGTGGACG+TGG 0.556253 7:+66416384 MsG0780039592.01.T01:CDS
AGCTGAAGAAGGAGATCAGT+TGG 0.562890 7:+66418377 MsG0780039592.01.T01:CDS
AACTGAACAACAAAAGGCTA+AGG 0.582581 7:+66415865 MsG0780039592.01.T01:CDS
GAGAGTATTTGCTATCGTTG+TGG 0.583351 7:+66416565 MsG0780039592.01.T01:CDS
GATATGCAAAAGCATCATCA+AGG 0.585601 7:-66418848 None:intergenic
ATTCATTACGAGCATTAGGA+AGG 0.589984 7:-66416009 None:intergenic
CCTTATGAAGGTGGTGACGA+AGG 0.598722 7:-66415898 None:intergenic
ACGTGGTCGTGGTTATGGAA+GGG 0.598966 7:+66416407 MsG0780039592.01.T01:CDS
AGTATTTGCTATCGTTGTGG+AGG 0.599695 7:+66416568 MsG0780039592.01.T01:CDS
GGTCTACCACGCTTCAAGCG+TGG 0.601629 7:-66418610 None:intergenic
CATCAAGGTTGACTTCATCT+CGG 0.604497 7:-66418833 None:intergenic
GAAATCAGCAGCATCTAAGT+GGG 0.621669 7:-66416734 None:intergenic
ATGTCACCAATGGAATACAA+TGG 0.623388 7:+66418808 MsG0780039592.01.T01:CDS
AAATTCATTTAAATGCCGAA+GGG 0.631745 7:+66415810 MsG0780039592.01.T01:CDS
CACGTCCACGACCATAACCA+TGG 0.649591 7:-66416377 None:intergenic
TCTGAACCACGCTTGAAGCG+TGG 0.660509 7:+66418604 MsG0780039592.01.T01:CDS
GTGGTGACGAAGGAATATCA+TGG 0.663314 7:-66415888 None:intergenic
TCTATTAAGGAATGTAGACA+AGG 0.664179 7:+66418918 MsG0780039592.01.T01:CDS
ACTTCTCTATTAACACTGTG+TGG 0.668278 7:+66416097 MsG0780039592.01.T01:CDS
ATAATGAGGATCAAGAACCA+AGG 0.701376 7:+66418895 MsG0780039592.01.T01:CDS
GATCACTATGGACAAACTCG+TGG 0.716183 7:+66416342 MsG0780039592.01.T01:CDS
TGATTGAGATGAGAACTCAG+CGG 0.822584 7:-66417881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTAATAATTCTTG+TGG + Chr7:66417524-66417543 MsG0780039592.01.T01:intron 10.0%
!!! ATCATAATAAATTTGTTGTT+TGG + Chr7:66417462-66417481 MsG0780039592.01.T01:intron 15.0%
!! AAATGTTGTAAAGATGATAT+TGG + Chr7:66416523-66416542 MsG0780039592.01.T01:intron 20.0%
!! AATCAAATTTCCCAATATTA+GGG + Chr7:66418341-66418360 MsG0780039592.01.T01:intron 20.0%
!! AATTTGGATAAAATAAGTGT+TGG + Chr7:66417352-66417371 MsG0780039592.01.T01:intron 20.0%
!! ACTTCAAAATAAGGATAAAA+GGG + Chr7:66416654-66416673 MsG0780039592.01.T01:CDS 20.0%
!! TAGGAATTTATTAAGTTTCA+AGG + Chr7:66417255-66417274 MsG0780039592.01.T01:intron 20.0%
!! TTATATAACGAGACATAATT+TGG + Chr7:66417336-66417355 MsG0780039592.01.T01:intron 20.0%
!!! AAAACCATAAAGTATCTAAA+TGG - Chr7:66417721-66417740 None:intergenic 20.0%
!!! AAATGTGATAAATGATAATG+AGG + Chr7:66418881-66418900 MsG0780039592.01.T01:CDS 20.0%
!!! TATTATGATTTGTAAACTTC+TGG - Chr7:66417451-66417470 None:intergenic 20.0%
!!! TATTTCTGGAAATAATTATC+TGG + Chr7:66415769-66415788 MsG0780039592.01.T01:CDS 20.0%
! AAAATTCATTTAAATGCCGA+AGG + Chr7:66415809-66415828 MsG0780039592.01.T01:CDS 25.0%
! AAATTCATTTAAATGCCGAA+GGG + Chr7:66415810-66415829 MsG0780039592.01.T01:CDS 25.0%
! AATAAATTCCTATGAGACTT+GGG - Chr7:66417247-66417266 None:intergenic 25.0%
! AATGAATATTGTATGTCCAT+TGG + Chr7:66417907-66417926 MsG0780039592.01.T01:intron 25.0%
! ACATCCAAAAATTCTTAGAT+GGG - Chr7:66418162-66418181 None:intergenic 25.0%
! ATCAAATTTCCCAATATTAG+GGG + Chr7:66418342-66418361 MsG0780039592.01.T01:intron 25.0%
! ATGAATATTGTATGTCCATT+GGG + Chr7:66417908-66417927 MsG0780039592.01.T01:intron 25.0%
! ATTAACATTAACCCCAATAA+TGG + Chr7:66417029-66417048 MsG0780039592.01.T01:intron 25.0%
! ATTCTTAGATGGGAAATATT+AGG - Chr7:66418152-66418171 None:intergenic 25.0%
! CACTTCAAAATAAGGATAAA+AGG + Chr7:66416653-66416672 MsG0780039592.01.T01:CDS 25.0%
! GAAAATGATGAAGATGATTA+TGG + Chr7:66416697-66416716 MsG0780039592.01.T01:CDS 25.0%
! GAATCAAATTTCCCAATATT+AGG + Chr7:66418340-66418359 MsG0780039592.01.T01:intron 25.0%
! GGAAGTTCAAAAATAATTGA+AGG + Chr7:66417154-66417173 MsG0780039592.01.T01:intron 25.0%
! TAATAAATTCCTATGAGACT+TGG - Chr7:66417248-66417267 None:intergenic 25.0%
! TCAATAAATTATGTCACCAA+TGG + Chr7:66418798-66418817 MsG0780039592.01.T01:CDS 25.0%
! TGAAGATGATTATGGTAATA+TGG + Chr7:66416705-66416724 MsG0780039592.01.T01:CDS 25.0%
! TGTTAATGCTCCTATAAAAA+TGG + Chr7:66418546-66418565 MsG0780039592.01.T01:CDS 25.0%
!! AACAACTCATACAATTTTCA+AGG + Chr7:66417076-66417095 MsG0780039592.01.T01:intron 25.0%
!! ACTCTTAAACATTTTATAGG+TGG - Chr7:66416823-66416842 None:intergenic 25.0%
!! ATCATTTTCACATGCAAAAT+GGG - Chr7:66416686-66416705 None:intergenic 25.0%
!! ATTTCCCATCTAAGAATTTT+TGG + Chr7:66418155-66418174 MsG0780039592.01.T01:intron 25.0%
!! CTCTTAAACATTTTATAGGT+GGG - Chr7:66416822-66416841 None:intergenic 25.0%
!! GGTACTCTTAAACATTTTAT+AGG - Chr7:66416826-66416845 None:intergenic 25.0%
!! TAAAGATCAACAAGATGTTT+TGG - Chr7:66416625-66416644 None:intergenic 25.0%
!! TCTTAAACATTTTATAGGTG+GGG - Chr7:66416821-66416840 None:intergenic 25.0%
!! TTCGGCATTTAAATGAATTT+TGG - Chr7:66415810-66415829 None:intergenic 25.0%
!! TTTACAACATTTTCATCTTC+TGG - Chr7:66416515-66416534 None:intergenic 25.0%
!! TTTGGGACAATTTAAAAGAA+AGG + Chr7:66415963-66415982 MsG0780039592.01.T01:CDS 25.0%
!!! AAATTTTTAGAGCGAATACA+TGG + Chr7:66417661-66417680 MsG0780039592.01.T01:intron 25.0%
!!! CATTTTTTAGATCCTTATGA+AGG - Chr7:66415913-66415932 None:intergenic 25.0%
!!! GAGAAAATGTGTTTTTGTTT+TGG - Chr7:66416491-66416510 None:intergenic 25.0%
!!! TAAATGAATTTTGGCATCAA+GGG - Chr7:66415801-66415820 None:intergenic 25.0%
!!! TGTTTTGTTTCCTTCTTTAA+TGG - Chr7:66415846-66415865 None:intergenic 25.0%
!!! TTAAATGAATTTTGGCATCA+AGG - Chr7:66415802-66415821 None:intergenic 25.0%
AATGTAGACAAGGCAAAAAT+TGG + Chr7:66418928-66418947 MsG0780039592.01.T01:CDS 30.0%
AGAAGATCCAAAAGATCTTT+GGG + Chr7:66415946-66415965 MsG0780039592.01.T01:CDS 30.0%
AGACACATATCTCCATTATT+GGG - Chr7:66417044-66417063 None:intergenic 30.0%
ATGGTTGTATTTACGTTTAC+AGG + Chr7:66416030-66416049 MsG0780039592.01.T01:CDS 30.0%
CAAAACAACTGAACAACAAA+AGG + Chr7:66415859-66415878 MsG0780039592.01.T01:CDS 30.0%
CACATCCAAAAATTCTTAGA+TGG - Chr7:66418163-66418182 None:intergenic 30.0%
CATTAGAGATGAAAATATCC+AGG + Chr7:66416788-66416807 MsG0780039592.01.T01:CDS 30.0%
CCAACAATCACTTCAAAATA+AGG + Chr7:66416645-66416664 MsG0780039592.01.T01:CDS 30.0%
GAATACATGGTGATATTTGT+GGG + Chr7:66417674-66417693 MsG0780039592.01.T01:intron 30.0%
GGTATTTCAGATATCTGATT+AGG - Chr7:66418762-66418781 None:intergenic 30.0%
GTAAATAAATCTCCTGTTGT+TGG - Chr7:66418292-66418311 None:intergenic 30.0%
TAATTGATGCATCAACTAGA+TGG + Chr7:66417740-66417759 MsG0780039592.01.T01:intron 30.0%
TACATTAGATGCATGAAAAG+TGG - Chr7:66416164-66416183 None:intergenic 30.0%
TAGAAGATCCAAAAGATCTT+TGG + Chr7:66415945-66415964 MsG0780039592.01.T01:CDS 30.0%
TATTAGATTGAAGATTCTCC+TGG - Chr7:66417565-66417584 None:intergenic 30.0%
TCAAAAATAATTGAAGGCTC+CGG + Chr7:66417160-66417179 MsG0780039592.01.T01:intron 30.0%
TCAAATTTCCCAATATTAGG+GGG + Chr7:66418343-66418362 MsG0780039592.01.T01:intron 30.0%
TCTATTAAGGAATGTAGACA+AGG + Chr7:66418918-66418937 MsG0780039592.01.T01:CDS 30.0%
TGGACCATTTAGATACTTTA+TGG + Chr7:66417714-66417733 MsG0780039592.01.T01:intron 30.0%
TTCAAGGATATTCGTCTAAA+TGG + Chr7:66417271-66417290 MsG0780039592.01.T01:intron 30.0%
! AAATTGTCCCAAAGATCTTT+TGG - Chr7:66415956-66415975 None:intergenic 30.0%
! AAGATCTTTTGGATCTTCTA+TGG - Chr7:66415945-66415964 None:intergenic 30.0%
! ATTGAGATCTCTTGATTTTC+AGG - Chr7:66418783-66418802 None:intergenic 30.0%
! ATTTTCTTGACAGGATAATC+AGG - Chr7:66417847-66417866 None:intergenic 30.0%
! CAATTTTAGATTGTCCAACA+GGG - Chr7:66418576-66418595 None:intergenic 30.0%
! CATCATTTTCACATGCAAAA+TGG - Chr7:66416687-66416706 None:intergenic 30.0%
! TGGAAATAATTATCTGGCTT+GGG + Chr7:66415775-66415794 MsG0780039592.01.T01:CDS 30.0%
! TGTGATTTAGTCACACTTTT+TGG - Chr7:66418517-66418536 None:intergenic 30.0%
! TTCAATTGCATCTTCCATTT+TGG - Chr7:66418954-66418973 None:intergenic 30.0%
! TTGGTTCGAGATACTTTAAA+TGG - Chr7:66418273-66418292 None:intergenic 30.0%
! TTTGAGGCTCTTAATATTTC+TGG + Chr7:66415755-66415774 MsG0780039592.01.T01:CDS 30.0%
! TTTTCTTGACAGGATAATCA+GGG - Chr7:66417846-66417865 None:intergenic 30.0%
! TTTTTAGATCCTTATGAAGG+TGG - Chr7:66415910-66415929 None:intergenic 30.0%
!! GGTTTTAATCGTAATCACAA+TGG + Chr7:66416441-66416460 MsG0780039592.01.T01:intron 30.0%
!! TCTAAGAATTTTTGGATGTG+CGG + Chr7:66418163-66418182 MsG0780039592.01.T01:intron 30.0%
!!! CCTTATTTTGAAGTGATTGT+TGG - Chr7:66416648-66416667 None:intergenic 30.0%
!!! TCTTTTCTAAAGCAACAAAC+CGG + Chr7:66417115-66417134 MsG0780039592.01.T01:intron 30.0%
!!! TTTTTATCTTTGGAACCGAT+TGG - Chr7:66418634-66418653 None:intergenic 30.0%
AAAAATCCTCGAGCAAGAAA+AGG + Chr7:66418649-66418668 MsG0780039592.01.T01:intron 35.0%
AAAAGGAGGCAAAAGCAAAA+AGG + Chr7:66418666-66418685 MsG0780039592.01.T01:intron 35.0%
AAAGGAGGCAAAAGCAAAAA+GGG + Chr7:66418667-66418686 MsG0780039592.01.T01:intron 35.0%
AAATTACCCATTTCCACTTG+GGG + Chr7:66418035-66418054 MsG0780039592.01.T01:intron 35.0%
AACCATTCATTACGAGCATT+AGG - Chr7:66416016-66416035 None:intergenic 35.0%
AACTGAACAACAAAAGGCTA+AGG + Chr7:66415865-66415884 MsG0780039592.01.T01:CDS 35.0%
AAGGCAAAAATTGGCCAAAA+TGG + Chr7:66418937-66418956 MsG0780039592.01.T01:CDS 35.0%
AAGTATCTAAATGGTCCACA+TGG - Chr7:66417712-66417731 None:intergenic 35.0%
AATTTGCATCTCATGAGAAG+TGG - Chr7:66418020-66418039 None:intergenic 35.0%
ACTTCTCTATTAACACTGTG+TGG + Chr7:66416097-66416116 MsG0780039592.01.T01:CDS 35.0%
AGAGCTAATGTGATATTGTG+TGG + Chr7:66417184-66417203 MsG0780039592.01.T01:intron 35.0%
AGCACATGTTCATACACAAA+TGG + Chr7:66417951-66417970 MsG0780039592.01.T01:intron 35.0%
ATAAAAATGGATGTCCCTGT+TGG + Chr7:66418559-66418578 MsG0780039592.01.T01:CDS 35.0%
ATAAGTGTAGTACAAACCAG+AGG - Chr7:66417396-66417415 None:intergenic 35.0%
ATAATGAGGATCAAGAACCA+AGG + Chr7:66418895-66418914 MsG0780039592.01.T01:CDS 35.0%
ATGTCACCAATGGAATACAA+TGG + Chr7:66418808-66418827 MsG0780039592.01.T01:CDS 35.0%
ATGTTCAATGTCAATCCCAA+TGG - Chr7:66417926-66417945 None:intergenic 35.0%
ATTAACACTGTGTGGAGAAA+AGG + Chr7:66416105-66416124 MsG0780039592.01.T01:CDS 35.0%
ATTCATTACGAGCATTAGGA+AGG - Chr7:66416012-66416031 None:intergenic 35.0%
CAAATTACCCATTTCCACTT+GGG + Chr7:66418034-66418053 MsG0780039592.01.T01:intron 35.0%
CATGGAGATACCATTAAAGA+AGG + Chr7:66415833-66415852 MsG0780039592.01.T01:CDS 35.0%
CGAAGGTTAGGAATATATGT+TGG + Chr7:66418233-66418252 MsG0780039592.01.T01:intron 35.0%
CGAATACATGGTGATATTTG+TGG + Chr7:66417673-66417692 MsG0780039592.01.T01:intron 35.0%
CTACATTCCTTAATAGACCT+TGG - Chr7:66418915-66418934 None:intergenic 35.0%
CTGGAAATAATTATCTGGCT+TGG + Chr7:66415774-66415793 MsG0780039592.01.T01:CDS 35.0%
GACACATATCTCCATTATTG+GGG - Chr7:66417043-66417062 None:intergenic 35.0%
GACCAAGAACCATTTCTAAA+GGG - Chr7:66418124-66418143 None:intergenic 35.0%
GAGACACATATCTCCATTAT+TGG - Chr7:66417045-66417064 None:intergenic 35.0%
GATATCTGATTAGGTTCTTC+TGG - Chr7:66418753-66418772 None:intergenic 35.0%
TATATTCCTAACCTTCGTTG+AGG - Chr7:66418230-66418249 None:intergenic 35.0%
TATATTCTCCCAAGTCTCAT+AGG + Chr7:66417236-66417255 MsG0780039592.01.T01:intron 35.0%
TCAAGAACCAAGGTCTATTA+AGG + Chr7:66418905-66418924 MsG0780039592.01.T01:CDS 35.0%
TCCAGATATAGTACTAACAC+CGG - Chr7:66417137-66417156 None:intergenic 35.0%
TTCCTAATGCTCGTAATGAA+TGG + Chr7:66416011-66416030 MsG0780039592.01.T01:CDS 35.0%
TTTATTATCAACTCGCAACC+AGG + Chr7:66417774-66417793 MsG0780039592.01.T01:intron 35.0%
TTTGGATCAGTGAATGCATT+TGG - Chr7:66418499-66418518 None:intergenic 35.0%
! AAGTTATCTTCCTTTTCCTC+TGG + Chr7:66417377-66417396 MsG0780039592.01.T01:intron 35.0%
! ACCAAGAACCATTTCTAAAG+GGG - Chr7:66418123-66418142 None:intergenic 35.0%
! ATTTTCTCTCCCCCTAATAT+TGG - Chr7:66418355-66418374 None:intergenic 35.0%
! CAATATCACATTAGCTCTTC+CGG - Chr7:66417182-66417201 None:intergenic 35.0%
! CACAAGGGAAATTGATAATC+AGG + Chr7:66417606-66417625 MsG0780039592.01.T01:intron 35.0%
! CCTCAAAATCAAGTTTTGCA+AGG - Chr7:66415742-66415761 None:intergenic 35.0%
! CCTTGCAAAACTTGATTTTG+AGG + Chr7:66415739-66415758 MsG0780039592.01.T01:CDS 35.0%
! CTTTTGGATCTTCTATGGTA+AGG - Chr7:66415940-66415959 None:intergenic 35.0%
! GAGATGATCATCTTTTCATC+AGG - Chr7:66416769-66416788 None:intergenic 35.0%
! GAGGAGTTATGATAACTTGT+TGG - Chr7:66418101-66418120 None:intergenic 35.0%
! GATTCACTTCCAATTTTCGT+TGG - Chr7:66417638-66417657 None:intergenic 35.0%
! GCAATTTTAGATTGTCCAAC+AGG - Chr7:66418577-66418596 None:intergenic 35.0%
! TCAAGTCGTATTTTCTTGAC+AGG - Chr7:66417856-66417875 None:intergenic 35.0%
! TGCTCGAGGATTTTTATCTT+TGG - Chr7:66418644-66418663 None:intergenic 35.0%
! TGTTCACATTGTTTAGTTCG+AGG - Chr7:66418430-66418449 None:intergenic 35.0%
! TTCATACACAAATGGACTTG+CGG + Chr7:66417959-66417978 MsG0780039592.01.T01:intron 35.0%
! TTTTCGCATCATTATTGACC+CGG - Chr7:66417507-66417526 None:intergenic 35.0%
! TTTTCTCTCCCCCTAATATT+GGG - Chr7:66418354-66418373 None:intergenic 35.0%
!! AATTTGTTGTTTGGCATGAC+CGG + Chr7:66417471-66417490 MsG0780039592.01.T01:intron 35.0%
!! ACAGGGACATCCATTTTTAT+AGG - Chr7:66418559-66418578 None:intergenic 35.0%
!! GATATGCAAAAGCATCATCA+AGG - Chr7:66418851-66418870 None:intergenic 35.0%
!! TTTATAGGAGCATTAACAGC+TGG - Chr7:66418544-66418563 None:intergenic 35.0%
!!! ACCTTTTAAAACCCTTTTCG+CGG - Chr7:66416204-66416223 None:intergenic 35.0%
AAGTATCTCGAACCAACAAC+AGG + Chr7:66418277-66418296 MsG0780039592.01.T01:intron 40.0%
AGAAATCAGCAGCATCTAAG+TGG - Chr7:66416738-66416757 None:intergenic 40.0%
AGAGAAAATGCAGCTGAAGA+AGG + Chr7:66418366-66418385 MsG0780039592.01.T01:CDS 40.0%
ATCTAAATGGTCCACATGGT+GGG - Chr7:66417708-66417727 None:intergenic 40.0%
CAAAAAGGGAAGAGAGAAAG+AGG + Chr7:66418681-66418700 MsG0780039592.01.T01:intron 40.0%
CAATTTCCCTTGTGAACAAG+AGG - Chr7:66417600-66417619 None:intergenic 40.0%
CATGTACCTCTTGTTCACAA+GGG + Chr7:66417591-66417610 MsG0780039592.01.T01:intron 40.0%
CGACCAAGAACCATTTCTAA+AGG - Chr7:66418125-66418144 None:intergenic 40.0%
GAAATCAGCAGCATCTAAGT+GGG - Chr7:66416737-66416756 None:intergenic 40.0%
GCAAATTACCCATTTCCACT+TGG + Chr7:66418033-66418052 MsG0780039592.01.T01:intron 40.0%
GCTAATGTGATATTGTGTGG+AGG + Chr7:66417187-66417206 MsG0780039592.01.T01:intron 40.0%
GTAGTACAAACCAGAGGAAA+AGG - Chr7:66417390-66417409 None:intergenic 40.0%
TATCTAAATGGTCCACATGG+TGG - Chr7:66417709-66417728 None:intergenic 40.0%
TCATGTACCTCTTGTTCACA+AGG + Chr7:66417590-66417609 MsG0780039592.01.T01:intron 40.0%
TCGGTTCCATTGTATTCCAT+TGG - Chr7:66418817-66418836 None:intergenic 40.0%
TGATTGAGATGAGAACTCAG+CGG - Chr7:66417884-66417903 None:intergenic 40.0%
TGTGTATGAACATGTGCTAC+TGG - Chr7:66417949-66417968 None:intergenic 40.0%
TTTCGCATCATTATTGACCC+GGG - Chr7:66417506-66417525 None:intergenic 40.0%
! AAGAACCATTTCTAAAGGGG+AGG - Chr7:66418120-66418139 None:intergenic 40.0%
! ACCGGTGTTAGTACTATATC+TGG + Chr7:66417133-66417152 MsG0780039592.01.T01:intron 40.0%
! CATCAAGGTTGACTTCATCT+CGG - Chr7:66418836-66418855 None:intergenic 40.0%
! GAAGGATGACAGTTTTCTGA+TGG - Chr7:66415994-66416013 None:intergenic 40.0%
! TAACTCCTCCCCTTTAGAAA+TGG + Chr7:66418112-66418131 MsG0780039592.01.T01:intron 40.0%
! TCCCCTTTAGAAATGGTTCT+TGG + Chr7:66418119-66418138 MsG0780039592.01.T01:intron 40.0%
!! AGTATTTGCTATCGTTGTGG+AGG + Chr7:66416568-66416587 MsG0780039592.01.T01:CDS 40.0%
!! CTTCCAATTTTCGTTGGTGA+TGG - Chr7:66417632-66417651 None:intergenic 40.0%
!! GAGAGTATTTGCTATCGTTG+TGG + Chr7:66416565-66416584 MsG0780039592.01.T01:CDS 40.0%
!!! ACCGCGAAAAGGGTTTTAAA+AGG + Chr7:66416200-66416219 MsG0780039592.01.T01:CDS 40.0%
AATCCTCGAGCAAGAAAAGG+AGG + Chr7:66418652-66418671 MsG0780039592.01.T01:intron 45.0%
AATGGTATCTCCATGCCCTT+CGG - Chr7:66415828-66415847 None:intergenic 45.0%
AGCTGAAGAAGGAGATCAGT+TGG + Chr7:66418377-66418396 MsG0780039592.01.T01:CDS 45.0%
AGGCCATCACCAACGAAAAT+TGG + Chr7:66417626-66417645 MsG0780039592.01.T01:intron 45.0%
ATCTTAGTGCGTTGTGGTGA+AGG - Chr7:66418203-66418222 None:intergenic 45.0%
CAAAATTGCATGTCCCCAAG+TGG - Chr7:66418051-66418070 None:intergenic 45.0%
CAGCAACAATACCGCGAAAA+GGG + Chr7:66416190-66416209 MsG0780039592.01.T01:CDS 45.0%
CATTTAAATGCCGAAGGGCA+TGG + Chr7:66415815-66415834 MsG0780039592.01.T01:CDS 45.0%
GATATGTGTCTCGCTGATAG+TGG + Chr7:66417053-66417072 MsG0780039592.01.T01:intron 45.0%
GATCACTATGGACAAACTCG+TGG + Chr7:66416342-66416361 MsG0780039592.01.T01:CDS 45.0%
GCGTTGCTACATTCACTTCT+GGG - Chr7:66416320-66416339 None:intergenic 45.0%
GTAGCAACGCATGATCACTA+TGG + Chr7:66416330-66416349 MsG0780039592.01.T01:CDS 45.0%
GTTGTGGAGGAAAAGGTCAT+TGG + Chr7:66416581-66416600 MsG0780039592.01.T01:CDS 45.0%
TATAGGTGGGGTTCTATTCC+TGG - Chr7:66416809-66416828 None:intergenic 45.0%
TCACCACAACGCACTAAGAT+GGG + Chr7:66418203-66418222 MsG0780039592.01.T01:intron 45.0%
TGCGTTGCTACATTCACTTC+TGG - Chr7:66416321-66416340 None:intergenic 45.0%
TGCTATCGTTGTGGAGGAAA+AGG + Chr7:66416574-66416593 MsG0780039592.01.T01:CDS 45.0%
TTCACCACAACGCACTAAGA+TGG + Chr7:66418202-66418221 MsG0780039592.01.T01:intron 45.0%
TTGAAGCGTGGTAGACCAAT+CGG + Chr7:66418616-66418635 MsG0780039592.01.T01:CDS 45.0%
! GCTACATTCACTTCTGGGAA+TGG - Chr7:66416315-66416334 None:intergenic 45.0%
! GTGGTGACGAAGGAATATCA+TGG - Chr7:66415891-66415910 None:intergenic 45.0%
!! CTGCATCATTGATTCGCATC+AGG + Chr7:66418075-66418094 MsG0780039592.01.T01:intron 45.0%
!!! AAGATGTTTTGGCGTACGAC+AGG - Chr7:66416614-66416633 None:intergenic 45.0%
!!! TTTTATTATAAGAAAATAAA+AGG - Chr7:66416847-66416866 None:intergenic 5.0%
ACGTGGTCGTGGTTATGGAA+GGG + Chr7:66416407-66416426 MsG0780039592.01.T01:CDS 50.0%
ATGGGTCCTCAACGAAGGTT+AGG + Chr7:66418221-66418240 MsG0780039592.01.T01:intron 50.0%
CCTTCGTCACCACCTTCATA+AGG + Chr7:66415898-66415917 MsG0780039592.01.T01:CDS 50.0%
CTAAGATGGGTCCTCAACGA+AGG + Chr7:66418216-66418235 MsG0780039592.01.T01:intron 50.0%
GCAGCAACAATACCGCGAAA+AGG + Chr7:66416189-66416208 MsG0780039592.01.T01:CDS 50.0%
GCATCATTATTGACCCGGGA+TGG - Chr7:66417502-66417521 None:intergenic 50.0%
GCATGTCCCCAAGTGGAAAT+GGG - Chr7:66418044-66418063 None:intergenic 50.0%
GTGCGTTGTGGTGAAGGAAT+TGG - Chr7:66418197-66418216 None:intergenic 50.0%
GTTGTTTGGCATGACCGGTT+GGG + Chr7:66417476-66417495 MsG0780039592.01.T01:intron 50.0%
TATGGACAAACTCGTGGTCG+TGG + Chr7:66416348-66416367 MsG0780039592.01.T01:CDS 50.0%
TGCATGTCCCCAAGTGGAAA+TGG - Chr7:66418045-66418064 None:intergenic 50.0%
TGGTCATCAGTTGAAGAGCC+AGG + Chr7:66417544-66417563 MsG0780039592.01.T01:intron 50.0%
! CCTTATGAAGGTGGTGACGA+AGG - Chr7:66415901-66415920 None:intergenic 50.0%
! TATGGAAGGGGACGTGGTTT+TGG + Chr7:66416420-66416439 MsG0780039592.01.T01:CDS 50.0%
! TGTTGTTTGGCATGACCGGT+TGG + Chr7:66417475-66417494 MsG0780039592.01.T01:intron 50.0%
! TTGCCTCCTTTTCTTGCTCG+AGG - Chr7:66418658-66418677 None:intergenic 50.0%
AATCACACGACTCGTCCCAC+TGG + Chr7:66416282-66416301 MsG0780039592.01.T01:intron 55.0%
CACGTCCACGACCATAACCA+TGG - Chr7:66416380-66416399 None:intergenic 55.0%
CATGGTTATGGTCGTGGACG+TGG + Chr7:66416378-66416397 MsG0780039592.01.T01:CDS 55.0%
CGTGGTCGTGGTTATGGAAG+GGG + Chr7:66416408-66416427 MsG0780039592.01.T01:CDS 55.0%
CTAGCAATCTCGCAAACGCC+TGG - Chr7:66417795-66417814 None:intergenic 55.0%
GACGTGGTCGTGGTTATGGA+AGG + Chr7:66416406-66416425 MsG0780039592.01.T01:CDS 55.0%
GGACCCATCTTAGTGCGTTG+TGG - Chr7:66418209-66418228 None:intergenic 55.0%
TCTGAACCACGCTTGAAGCG+TGG + Chr7:66418604-66418623 MsG0780039592.01.T01:CDS 55.0%
! GGGAATGGAGCACTACCAGT+GGG - Chr7:66416300-66416319 None:intergenic 55.0%
! TGGGAATGGAGCACTACCAG+TGG - Chr7:66416301-66416320 None:intergenic 55.0%
!! GGTCCACATGGTGGGTGTAT+TGG - Chr7:66417700-66417719 None:intergenic 55.0%
CAAACTCGTGGTCGTGGTCG+TGG + Chr7:66416354-66416373 MsG0780039592.01.T01:CDS 60.0%
CGTGGACGTGGTCGTGGTTA+TGG + Chr7:66416402-66416421 MsG0780039592.01.T01:CDS 60.0%
CGTGGCCATGGTTATGGTCG+TGG + Chr7:66416372-66416391 MsG0780039592.01.T01:CDS 60.0%
CGTGGTCGTGGCCATGGTTA+TGG + Chr7:66416366-66416385 MsG0780039592.01.T01:CDS 60.0%
CGTGGTTATGGAAGGGGACG+TGG + Chr7:66416414-66416433 MsG0780039592.01.T01:CDS 60.0%
GGGCCAATACACCCACCATG+TGG + Chr7:66417694-66417713 MsG0780039592.01.T01:intron 60.0%
GGTCTACCACGCTTCAAGCG+TGG - Chr7:66418613-66418632 None:intergenic 60.0%
TATGGTCGTGGACGTGGACG+TGG + Chr7:66416384-66416403 MsG0780039592.01.T01:CDS 60.0%
ATGACCGGTTGGGCCATCCC+GGG + Chr7:66417486-66417505 MsG0780039592.01.T01:intron 65.0%
CATGACCGGTTGGGCCATCC+CGG + Chr7:66417485-66417504 MsG0780039592.01.T01:intron 65.0%
TTGACCCGGGATGGCCCAAC+CGG - Chr7:66417493-66417512 None:intergenic 65.0%
CGTGGACGTGGACGTGGACG+TGG + Chr7:66416390-66416409 MsG0780039592.01.T01:CDS 70.0%
CGTGGACGTGGACGTGGTCG+TGG + Chr7:66416396-66416415 MsG0780039592.01.T01:CDS 70.0%
CGTGGTCGTGGTCGTGGCCA+TGG + Chr7:66416360-66416379 MsG0780039592.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 66415731 66418983 66415731 ID=MsG0780039592.01;Name=MsG0780039592.01
Chr7 mRNA 66415731 66418983 66415731 ID=MsG0780039592.01.T01;Parent=MsG0780039592.01;Name=MsG0780039592.01.T01;_AED=0.57;_eAED=0.69;_QI=0|0|0|0.5|0.4|0.5|6|0|523
Chr7 exon 66415731 66416221 66415731 ID=MsG0780039592.01.T01:exon:10562;Parent=MsG0780039592.01.T01
Chr7 exon 66416308 66416450 66416308 ID=MsG0780039592.01.T01:exon:10563;Parent=MsG0780039592.01.T01
Chr7 exon 66416536 66416840 66416536 ID=MsG0780039592.01.T01:exon:10564;Parent=MsG0780039592.01.T01
Chr7 exon 66417796 66417916 66417796 ID=MsG0780039592.01.T01:exon:10565;Parent=MsG0780039592.01.T01
Chr7 exon 66418362 66418637 66418362 ID=MsG0780039592.01.T01:exon:10566;Parent=MsG0780039592.01.T01
Chr7 exon 66418748 66418983 66418748 ID=MsG0780039592.01.T01:exon:10567;Parent=MsG0780039592.01.T01
Chr7 CDS 66415731 66416221 66415731 ID=MsG0780039592.01.T01:cds;Parent=MsG0780039592.01.T01
Chr7 CDS 66416308 66416450 66416308 ID=MsG0780039592.01.T01:cds;Parent=MsG0780039592.01.T01
Chr7 CDS 66416536 66416840 66416536 ID=MsG0780039592.01.T01:cds;Parent=MsG0780039592.01.T01
Chr7 CDS 66417796 66417916 66417796 ID=MsG0780039592.01.T01:cds;Parent=MsG0780039592.01.T01
Chr7 CDS 66418362 66418637 66418362 ID=MsG0780039592.01.T01:cds;Parent=MsG0780039592.01.T01
Chr7 CDS 66418748 66418983 66418748 ID=MsG0780039592.01.T01:cds;Parent=MsG0780039592.01.T01
Gene Sequence

>MsG0780039592.01.T01

ATGTCGAACCTTGCAAAACTTGATTTTGAGGCTCTTAATATTTCTGGAAATAATTATCTGGCTTGGGCCCTTGATGCCAAAATTCATTTAAATGCCGAAGGGCATGGAGATACCATTAAAGAAGGAAACAAAACAACTGAACAACAAAAGGCTAAGGCCATGATATTCCTTCGTCACCACCTTCATAAGGATCTAAAAAATGAATACCTTACCATAGAAGATCCAAAAGATCTTTGGGACAATTTAAAAGAAAGGTTTGACCATCAGAAAACTGTCATCCTTCCTAATGCTCGTAATGAATGGTTGTATTTACGTTTACAGGACTTTAAGTCTGTAATCGAATATAATTCAGCTGTATTTAAGATTACTTCTCTATTAACACTGTGTGGAGAAAAGGTGACTGATGCACAAATGTTAGAAAAAACATTCTCCACTTTTCATGCATCTAATGTAATCTTGCAGCAACAATACCGCGAAAAGGGTTTTAAAAGTGCTCCATTCCCAGAAGTGAATGTAGCAACGCATGATCACTATGGACAAACTCGTGGTCGTGGTCGTGGCCATGGTTATGGTCGTGGACGTGGACGTGGACGTGGTCGTGGTTATGGAAGGGGACGTGGTTTTGGTTTTAATCATGATATTGGTCAAAGCAGCAAAAGTAATGAGAGTATTTGCTATCGTTGTGGAGGAAAAGGTCATTGGAGTCGTACCTGTCGTACGCCAAAACATCTTGTTGATCTTTACCAACAATCACTTCAAAATAAGGATAAAAGGGCTGAAACCCATTTTGCATGTGAAAATGATGAAGATGATTATGGTAATATGGAAAGTACCCACTTAGATGCTGCTGATTTCTTTGTTGATCCTGATGAAAAGATGATCATCTCATTAGAGATGAAAATATCCAGGAATAGAACCCCACCTATAAAATGTTTAAGAGCGTTTGCGAGATTGCTAGCTCAACTAATTCGAATAAGAGCTCATTTCCCTGATTATCCTGTCAAGAAAATACGACTTGATAATGCCGCTGAGTTCTCATCTCAATCATTTAATGAATATTGGGGAGAGAAAATGCAGCTGAAGAAGGAGATCAGTTGGAATGAACTTTCATTGTCTCATCTTGATCCTCGAACTAAACAATGTGAACAAGAAGTTCAAAAGATAATTCATTTGCAAAGTTTATCAAATCAATTACCAAATGCATTCACTGATCCAAAAAGTGTGACTAAATCACATATACCAGCTGTTAATGCTCCTATAAAAATGGATGTCCCTGTTGGACAATCTAAAATTGCAAATGAGTCTGAACCACGCTTGAAGCGTGGTAGACCAATCGTTCCAGAAGAACCTAATCAGATATCTGAAATACCTGAAAATCAAGAGATCTCAATAAATTATGTCACCAATGGAATACAATGGAACCGAGATGAAGTCAACCTTGATGATGCTTTTGCATATCATATAGCACTAAATGTGATAAATGATAATGAGGATCAAGAACCAAGGTCTATTAAGGAATGTAGACAAGGCAAAAATTGGCCAAAATGGAAGATGCAATTGAAGCAGAATTAA
Protein sequence

>MsG0780039592.01.T01

MSNLAKLDFEALNISGNNYLAWALDAKIHLNAEGHGDTIKEGNKTTEQQKAKAMIFLRHHLHKDLKNEYLTIEDPKDLWDNLKERFDHQKTVILPNARNEWLYLRLQDFKSVIEYNSAVFKITSLLTLCGEKVTDAQMLEKTFSTFHASNVILQQQYREKGFKSAPFPEVNVATHDHYGQTRGRGRGHGYGRGRGRGRGRGYGRGRGFGFNHDIGQSSKSNESICYRCGGKGHWSRTCRTPKHLVDLYQQSLQNKDKRAETHFACENDEDDYGNMESTHLDAADFFVDPDEKMIISLEMKISRNRTPPIKCLRAFARLLAQLIRIRAHFPDYPVKKIRLDNAAEFSSQSFNEYWGEKMQLKKEISWNELSLSHLDPRTKQCEQEVQKIIHLQSLSNQLPNAFTDPKSVTKSHIPAVNAPIKMDVPVGQSKIANESEPRLKRGRPIVPEEPNQISEIPENQEISINYVTNGIQWNRDEVNLDDAFAYHIALNVINDNEDQEPRSIKECRQGKNWPKWKMQLKQN*