Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040296.01.T01 | KAG5252604.1 | 73.529 | 136 | 11 | 2 | 1 | 112 | 1 | 135 | 7.22E-56 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040296.01.T01 | P93087 | 69.333 | 150 | 7 | 2 | 1 | 112 | 1 | 149 | 6.44E-60 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040296.01.T01 | A0A2R6PFE1 | 68.667 | 150 | 8 | 2 | 1 | 112 | 1 | 149 | 1.20e-56 | 181 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048874.01 | MsG0780040296.01 | 0.810649 | 1.037616e-50 | 6.290036e-48 |
| MsG0780040296.01 | MsG0780040788.01 | 0.823820 | 1.127177e-53 | 9.811540e-51 |
| MsG0780040296.01 | MsG0880044554.01 | 0.806714 | 7.193851e-50 | 3.932275e-47 |
| MsG0680033379.01 | MsG0780040296.01 | 0.815631 | 8.373229e-52 | 5.804009e-49 |
| MsG0380017233.01 | MsG0780040296.01 | 0.801209 | 1.003070e-48 | 4.762744e-46 |
| MsG0280008615.01 | MsG0780040296.01 | 0.807758 | 4.321593e-50 | 2.427195e-47 |
| MsG0780036498.01 | MsG0780040296.01 | 0.807351 | 5.273769e-50 | 2.930824e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040296.01.T01 | MTR_7g087610 | 69.333 | 150 | 7 | 2 | 1 | 112 | 1 | 149 | 1.00e-60 | 182 |
| MsG0780040296.01.T01 | MTR_6g025320 | 68.667 | 150 | 8 | 2 | 1 | 112 | 1 | 149 | 3.43e-60 | 181 |
| MsG0780040296.01.T01 | MTR_5g088320 | 68.000 | 150 | 9 | 2 | 1 | 112 | 1 | 149 | 1.30e-59 | 180 |
| MsG0780040296.01.T01 | MTR_1g041285 | 54.362 | 149 | 29 | 3 | 1 | 111 | 1 | 148 | 1.67e-43 | 139 |
| MsG0780040296.01.T01 | MTR_1g076650 | 53.020 | 149 | 31 | 3 | 1 | 111 | 1 | 148 | 9.51e-42 | 135 |
| MsG0780040296.01.T01 | MTR_0168s0120 | 62.832 | 113 | 4 | 1 | 38 | 112 | 1 | 113 | 4.91e-38 | 124 |
| MsG0780040296.01.T01 | MTR_6g025320 | 62.832 | 113 | 4 | 1 | 38 | 112 | 1 | 113 | 4.91e-38 | 124 |
| MsG0780040296.01.T01 | MTR_1g071150 | 44.898 | 147 | 43 | 3 | 1 | 110 | 1 | 146 | 3.62e-31 | 108 |
| MsG0780040296.01.T01 | MTR_7g115040 | 41.611 | 149 | 48 | 3 | 1 | 111 | 1 | 148 | 3.98e-29 | 102 |
| MsG0780040296.01.T01 | MTR_3g055570 | 47.727 | 132 | 45 | 3 | 1 | 109 | 41 | 171 | 8.64e-28 | 100 |
| MsG0780040296.01.T01 | MTR_5g011850 | 39.865 | 148 | 52 | 3 | 1 | 112 | 1 | 147 | 6.82e-27 | 97.1 |
| MsG0780040296.01.T01 | MTR_3g055520 | 39.695 | 131 | 55 | 2 | 1 | 108 | 41 | 170 | 1.17e-21 | 84.7 |
| MsG0780040296.01.T01 | MTR_3g055585 | 40.458 | 131 | 54 | 3 | 1 | 108 | 41 | 170 | 6.19e-21 | 82.8 |
| MsG0780040296.01.T01 | MTR_3g055510 | 44.444 | 108 | 42 | 3 | 1 | 107 | 41 | 131 | 4.11e-19 | 77.0 |
| MsG0780040296.01.T01 | MTR_8g066630 | 32.215 | 149 | 59 | 3 | 4 | 111 | 9 | 156 | 1.40e-17 | 73.9 |
| MsG0780040296.01.T01 | MTR_3g055490 | 61.667 | 60 | 22 | 1 | 1 | 60 | 41 | 99 | 1.54e-17 | 72.4 |
| MsG0780040296.01.T01 | MTR_4g112460 | 33.099 | 142 | 54 | 3 | 8 | 109 | 7 | 147 | 4.07e-16 | 70.1 |
| MsG0780040296.01.T01 | MTR_1g032070 | 36.301 | 146 | 50 | 4 | 4 | 111 | 42 | 182 | 5.42e-16 | 70.5 |
| MsG0780040296.01.T01 | MTR_3g055480 | 38.182 | 110 | 25 | 2 | 1 | 110 | 41 | 107 | 6.41e-16 | 68.2 |
| MsG0780040296.01.T01 | MTR_8g069915 | 31.944 | 144 | 57 | 3 | 6 | 109 | 6 | 148 | 4.23e-14 | 64.7 |
| MsG0780040296.01.T01 | MTR_8g105230 | 35.606 | 132 | 46 | 3 | 12 | 105 | 36 | 166 | 7.21e-14 | 64.7 |
| MsG0780040296.01.T01 | MTR_8g107110 | 31.111 | 135 | 55 | 2 | 12 | 109 | 24 | 157 | 4.02e-13 | 62.4 |
| MsG0780040296.01.T01 | MTR_7g074020 | 30.556 | 144 | 61 | 2 | 4 | 109 | 22 | 164 | 6.55e-13 | 61.6 |
| MsG0780040296.01.T01 | MTR_6g079570 | 31.655 | 139 | 56 | 3 | 12 | 112 | 26 | 163 | 1.80e-12 | 60.8 |
| MsG0780040296.01.T01 | MTR_5g079340 | 30.370 | 135 | 56 | 2 | 12 | 109 | 4 | 137 | 4.78e-12 | 58.9 |
| MsG0780040296.01.T01 | MTR_6g007613 | 29.861 | 144 | 62 | 2 | 4 | 109 | 21 | 163 | 1.02e-11 | 58.5 |
| MsG0780040296.01.T01 | MTR_7g074020 | 38.679 | 106 | 62 | 3 | 5 | 108 | 23 | 127 | 1.11e-11 | 58.5 |
| MsG0780040296.01.T01 | MTR_6g007613 | 38.679 | 106 | 62 | 3 | 5 | 108 | 22 | 126 | 1.45e-11 | 58.2 |
| MsG0780040296.01.T01 | MTR_3g067610 | 31.818 | 132 | 55 | 3 | 12 | 109 | 5 | 135 | 5.26e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040296.01.T01 | AT3G43810 | 68.667 | 150 | 8 | 2 | 1 | 112 | 1 | 149 | 3.59e-60 | 181 |
| MsG0780040296.01.T01 | AT2G41110 | 64.596 | 161 | 8 | 2 | 1 | 112 | 1 | 161 | 4.19e-60 | 181 |
| MsG0780040296.01.T01 | AT2G27030 | 68.000 | 150 | 9 | 2 | 1 | 112 | 1 | 149 | 7.64e-60 | 182 |
| MsG0780040296.01.T01 | AT5G21274 | 68.000 | 150 | 9 | 2 | 1 | 112 | 1 | 149 | 1.24e-59 | 180 |
| MsG0780040296.01.T01 | AT3G56800 | 68.000 | 150 | 9 | 2 | 1 | 112 | 1 | 149 | 1.40e-59 | 180 |
| MsG0780040296.01.T01 | AT2G27030 | 68.000 | 150 | 9 | 2 | 1 | 112 | 1 | 149 | 1.40e-59 | 180 |
| MsG0780040296.01.T01 | AT2G41110 | 68.000 | 150 | 9 | 2 | 1 | 112 | 1 | 149 | 1.40e-59 | 180 |
| MsG0780040296.01.T01 | AT5G37780 | 66.667 | 150 | 11 | 2 | 1 | 112 | 1 | 149 | 9.20e-59 | 178 |
| MsG0780040296.01.T01 | AT1G66410 | 66.667 | 150 | 11 | 2 | 1 | 112 | 1 | 149 | 9.20e-59 | 178 |
| MsG0780040296.01.T01 | AT3G43810 | 68.456 | 149 | 8 | 2 | 1 | 111 | 1 | 148 | 1.12e-58 | 180 |
| MsG0780040296.01.T01 | AT5G37780 | 60.976 | 164 | 12 | 3 | 1 | 112 | 1 | 164 | 9.26e-56 | 171 |
| MsG0780040296.01.T01 | AT5G37780 | 57.143 | 175 | 12 | 3 | 1 | 112 | 1 | 175 | 2.72e-53 | 165 |
| MsG0780040296.01.T01 | AT1G66410 | 62.264 | 159 | 13 | 2 | 1 | 112 | 1 | 159 | 4.11e-51 | 159 |
| MsG0780040296.01.T01 | AT3G22930 | 54.483 | 145 | 27 | 3 | 4 | 110 | 27 | 170 | 4.12e-43 | 139 |
| MsG0780040296.01.T01 | AT5G37780 | 63.025 | 119 | 6 | 1 | 32 | 112 | 18 | 136 | 1.55e-41 | 134 |
| MsG0780040296.01.T01 | AT4G14640 | 52.778 | 144 | 29 | 3 | 5 | 110 | 6 | 148 | 2.99e-41 | 134 |
| MsG0780040296.01.T01 | AT3G43810 | 62.832 | 113 | 4 | 1 | 38 | 112 | 1 | 113 | 5.15e-38 | 124 |
| MsG0780040296.01.T01 | AT3G43810 | 62.832 | 113 | 4 | 1 | 38 | 112 | 1 | 113 | 5.15e-38 | 124 |
| MsG0780040296.01.T01 | AT1G66410 | 61.062 | 113 | 6 | 1 | 38 | 112 | 1 | 113 | 3.31e-37 | 122 |
| MsG0780040296.01.T01 | AT1G66410 | 61.062 | 113 | 6 | 1 | 38 | 112 | 1 | 113 | 3.31e-37 | 122 |
| MsG0780040296.01.T01 | AT2G41090 | 46.259 | 147 | 43 | 2 | 1 | 112 | 1 | 146 | 1.49e-32 | 112 |
| MsG0780040296.01.T01 | AT4G14640 | 48.718 | 117 | 22 | 2 | 32 | 110 | 14 | 130 | 4.27e-28 | 99.8 |
| MsG0780040296.01.T01 | AT1G12310 | 38.356 | 146 | 53 | 3 | 3 | 112 | 4 | 148 | 1.60e-26 | 96.3 |
| MsG0780040296.01.T01 | AT1G62820 | 37.671 | 146 | 54 | 3 | 3 | 112 | 4 | 148 | 2.95e-26 | 95.5 |
| MsG0780040296.01.T01 | AT2G41100 | 43.411 | 129 | 54 | 4 | 1 | 111 | 1 | 128 | 7.07e-25 | 95.9 |
| MsG0780040296.01.T01 | AT2G41100 | 39.521 | 167 | 45 | 4 | 1 | 112 | 90 | 255 | 4.61e-24 | 94.0 |
| MsG0780040296.01.T01 | AT2G41100 | 52.041 | 98 | 42 | 3 | 4 | 100 | 183 | 276 | 1.59e-19 | 81.6 |
| MsG0780040296.01.T01 | AT2G41100 | 43.411 | 129 | 54 | 4 | 1 | 111 | 1 | 128 | 7.07e-25 | 95.9 |
| MsG0780040296.01.T01 | AT2G41100 | 39.521 | 167 | 45 | 4 | 1 | 112 | 90 | 255 | 4.61e-24 | 94.0 |
| MsG0780040296.01.T01 | AT2G41100 | 52.041 | 98 | 42 | 3 | 4 | 100 | 183 | 276 | 1.59e-19 | 81.6 |
| MsG0780040296.01.T01 | AT2G41100 | 39.521 | 167 | 45 | 4 | 1 | 112 | 55 | 220 | 2.59e-24 | 94.0 |
| MsG0780040296.01.T01 | AT2G41100 | 52.041 | 98 | 42 | 3 | 4 | 100 | 148 | 241 | 1.07e-19 | 81.6 |
| MsG0780040296.01.T01 | AT2G41100 | 39.521 | 167 | 45 | 4 | 1 | 112 | 55 | 220 | 2.59e-24 | 94.0 |
| MsG0780040296.01.T01 | AT2G41100 | 52.041 | 98 | 42 | 3 | 4 | 100 | 148 | 241 | 1.07e-19 | 81.6 |
| MsG0780040296.01.T01 | AT2G41100 | 39.521 | 167 | 45 | 4 | 1 | 112 | 55 | 220 | 2.59e-24 | 94.0 |
| MsG0780040296.01.T01 | AT2G41100 | 52.041 | 98 | 42 | 3 | 4 | 100 | 148 | 241 | 1.07e-19 | 81.6 |
| MsG0780040296.01.T01 | AT3G22930 | 51.887 | 106 | 48 | 3 | 4 | 107 | 27 | 131 | 6.09e-24 | 89.4 |
| MsG0780040296.01.T01 | AT3G51920 | 38.926 | 149 | 52 | 3 | 1 | 111 | 1 | 148 | 1.13e-23 | 89.0 |
| MsG0780040296.01.T01 | AT2G41100 | 52.475 | 101 | 43 | 4 | 1 | 100 | 1 | 97 | 5.61e-23 | 87.0 |
| MsG0780040296.01.T01 | AT4G14640 | 50.980 | 102 | 47 | 3 | 5 | 104 | 6 | 106 | 4.30e-22 | 84.3 |
| MsG0780040296.01.T01 | AT2G41100 | 53.061 | 98 | 41 | 4 | 4 | 100 | 58 | 151 | 2.32e-20 | 81.6 |
| MsG0780040296.01.T01 | AT1G32250 | 30.065 | 153 | 62 | 3 | 1 | 109 | 5 | 156 | 2.59e-16 | 70.5 |
| MsG0780040296.01.T01 | AT3G50360 | 34.266 | 143 | 55 | 3 | 5 | 109 | 20 | 161 | 1.06e-15 | 68.9 |
| MsG0780040296.01.T01 | AT1G18530 | 30.769 | 143 | 58 | 3 | 7 | 109 | 2 | 143 | 1.62e-13 | 63.2 |
| MsG0780040296.01.T01 | AT1G18210 | 31.818 | 132 | 55 | 2 | 12 | 109 | 23 | 153 | 1.87e-13 | 63.2 |
| MsG0780040296.01.T01 | AT1G18210 | 31.818 | 132 | 55 | 2 | 12 | 109 | 23 | 153 | 1.87e-13 | 63.2 |
| MsG0780040296.01.T01 | AT5G37770 | 30.714 | 140 | 54 | 3 | 12 | 109 | 17 | 155 | 8.41e-13 | 61.2 |
| MsG0780040296.01.T01 | AT5G37770 | 30.714 | 140 | 54 | 3 | 12 | 109 | 17 | 155 | 8.41e-13 | 61.2 |
| MsG0780040296.01.T01 | AT4G37010 | 30.769 | 143 | 60 | 3 | 5 | 109 | 20 | 161 | 1.49e-12 | 60.8 |
| MsG0780040296.01.T01 | AT4G37010 | 30.769 | 143 | 60 | 3 | 5 | 109 | 24 | 165 | 1.65e-12 | 60.8 |
| MsG0780040296.01.T01 | AT1G24620 | 32.624 | 141 | 55 | 4 | 9 | 111 | 34 | 172 | 1.53e-11 | 58.5 |
| MsG0780040296.01.T01 | AT3G03000 | 37.634 | 93 | 56 | 2 | 21 | 111 | 65 | 157 | 2.55e-11 | 57.4 |
| MsG0780040296.01.T01 | AT1G66400 | 30.216 | 139 | 56 | 3 | 12 | 110 | 15 | 152 | 2.96e-11 | 57.4 |
Find 20 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTGCCTCTGTTGGATTC+TGG | 0.298067 | 7:+75588174 | None:intergenic |
| CACCAAGGTTGGTCATTACA+TGG | 0.419223 | 7:+75587977 | None:intergenic |
| TAATTATGATGAGTTTGTTA+AGG | 0.424704 | 7:-75587887 | MsG0780040296.01.T01:CDS |
| TTTAGCTTGTTTGATAAAGA+TGG | 0.429618 | 7:-75589525 | MsG0780040296.01.T01:CDS |
| TCTTGTAGCTCTGCCTCTGT+TGG | 0.445696 | 7:+75588167 | None:intergenic |
| GGAACCGTGATGAGGTCATT+AGG | 0.467925 | 7:-75588197 | MsG0780040296.01.T01:CDS |
| TTCCATCACAACAAGGAGCT+TGG | 0.488815 | 7:-75588218 | MsG0780040296.01.T01:CDS |
| TGAGTTTGTTAAGGTTATGA+TGG | 0.514750 | 7:-75587878 | MsG0780040296.01.T01:CDS |
| GTTTGATAATTAATTTCACT+TGG | 0.515900 | 7:+75587855 | None:intergenic |
| ATTCGAGAGGCTGATGTTGA+TGG | 0.520102 | 7:-75587922 | MsG0780040296.01.T01:CDS |
| TTCCAAGCTCCTTGTTGTGA+TGG | 0.533835 | 7:+75588216 | None:intergenic |
| CGCCATGTAATGACCAACCT+TGG | 0.550381 | 7:-75587979 | MsG0780040296.01.T01:CDS |
| GAGGCTGATGTTGATGGTGA+TGG | 0.590807 | 7:-75587916 | MsG0780040296.01.T01:CDS |
| TTGTTTGATAAAGATGGTGA+TGG | 0.635455 | 7:-75589519 | MsG0780040296.01.T01:CDS |
| AGTTGATGAAATGATTCGAG+AGG | 0.653094 | 7:-75587935 | MsG0780040296.01.T01:CDS |
| TTGAAGGTTCCATCACAACA+AGG | 0.653860 | 7:-75588225 | MsG0780040296.01.T01:intron |
| AGGAGCTTGGAACCGTGATG+AGG | 0.653977 | 7:-75588205 | MsG0780040296.01.T01:CDS |
| CTGGCCTAATGACCTCATCA+CGG | 0.677279 | 7:+75588193 | None:intergenic |
| ATAAACGAAGTAGATGCCGA+CGG | 0.728424 | 7:-75588140 | MsG0780040296.01.T01:intron |
| ATTAGGCCAGAATCCAACAG+AGG | 0.733821 | 7:-75588180 | MsG0780040296.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTCAAAAACTATAAT+TGG | + | Chr7:75588928-75588947 | None:intergenic | 10.0% |
| !! | ATTAAAAACAAAAGATATTA+TGG | + | Chr7:75588039-75588058 | None:intergenic | 10.0% |
| !! | ATTTGTATATTACAAATAAA+TGG | - | Chr7:75588977-75588996 | MsG0780040296.01.T01:intron | 10.0% |
| !! | TTAAAAACAAAAGATATTAT+GGG | + | Chr7:75588038-75588057 | None:intergenic | 10.0% |
| !!! | AATTATAGTTTTTGAAATTA+TGG | - | Chr7:75588927-75588946 | MsG0780040296.01.T01:intron | 10.0% |
| !! | TATATTGAAAAATGTCTAAT+CGG | + | Chr7:75588112-75588131 | None:intergenic | 15.0% |
| !!! | ATTAGACATTTTTCAATATA+GGG | - | Chr7:75588112-75588131 | MsG0780040296.01.T01:intron | 15.0% |
| !! | ATAACATTATATGACTTTGA+AGG | - | Chr7:75589202-75589221 | MsG0780040296.01.T01:intron | 20.0% |
| !! | ATGATAATATGCAATAAAAG+AGG | + | Chr7:75587997-75588016 | None:intergenic | 20.0% |
| !! | TGATAATATGCAATAAAAGA+GGG | + | Chr7:75587996-75588015 | None:intergenic | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | - | Chr7:75588646-75588665 | MsG0780040296.01.T01:intron | 20.0% |
| !!! | AGAATTTTTCAAGAAATAGT+TGG | - | Chr7:75588632-75588651 | MsG0780040296.01.T01:intron | 20.0% |
| !!! | ATGTGAATGTAATTCATTTT+AGG | - | Chr7:75588578-75588597 | MsG0780040296.01.T01:intron | 20.0% |
| !!! | GATTAGACATTTTTCAATAT+AGG | - | Chr7:75588111-75588130 | MsG0780040296.01.T01:intron | 20.0% |
| !!! | TAATTATGATGAGTTTGTTA+AGG | - | Chr7:75589556-75589575 | MsG0780040296.01.T01:CDS | 20.0% |
| ! | AAAACAAAAGATATTATGGG+AGG | + | Chr7:75588035-75588054 | None:intergenic | 25.0% |
| ! | AAACAAAAGATATTATGGGA+GGG | + | Chr7:75588034-75588053 | None:intergenic | 25.0% |
| ! | ACTAATGTAATCATATGTGT+TGG | + | Chr7:75588167-75588186 | None:intergenic | 25.0% |
| ! | ATAATTGTATCTCCATTCAT+GGG | + | Chr7:75588894-75588913 | None:intergenic | 25.0% |
| ! | TATAATTGTATCTCCATTCA+TGG | + | Chr7:75588895-75588914 | None:intergenic | 25.0% |
| !!! | AGACATCTAATTTTTTTGTG+AGG | + | Chr7:75588841-75588860 | None:intergenic | 25.0% |
| !!! | TTTAGCTTGTTTGATAAAGA+TGG | - | Chr7:75587918-75587937 | MsG0780040296.01.T01:CDS | 25.0% |
| AATTTCTAAACCTTATGGCA+AGG | - | Chr7:75589349-75589368 | MsG0780040296.01.T01:intron | 30.0% | |
| ATACATGACACTAAATCATG+CGG | - | Chr7:75589067-75589086 | MsG0780040296.01.T01:intron | 30.0% | |
| ATTTAGTGTCATGTATGTGT+CGG | + | Chr7:75589063-75589082 | None:intergenic | 30.0% | |
| CACTTCAAATTGAAGATGTA+TGG | - | Chr7:75589030-75589049 | MsG0780040296.01.T01:intron | 30.0% | |
| CATACATCTTCAATTTGAAG+TGG | + | Chr7:75589032-75589051 | None:intergenic | 30.0% | |
| GTCTCAAAAGAGAAGTTTAA+AGG | - | Chr7:75588361-75588380 | MsG0780040296.01.T01:intron | 30.0% | |
| TAATATGCAATAAAAGAGGG+AGG | + | Chr7:75587993-75588012 | None:intergenic | 30.0% | |
| TGCCATAAGGTTTAGAAATT+CGG | + | Chr7:75589349-75589368 | None:intergenic | 30.0% | |
| TGTAAAAAATTGCCCATGAA+TGG | - | Chr7:75588879-75588898 | MsG0780040296.01.T01:intron | 30.0% | |
| TTGTTTGATAAAGATGGTGA+TGG | - | Chr7:75587924-75587943 | MsG0780040296.01.T01:CDS | 30.0% | |
| ! | TCGAATATAAGACTTTTGCT+TGG | + | Chr7:75588529-75588548 | None:intergenic | 30.0% |
| !! | TGAGTTTGTTAAGGTTATGA+TGG | - | Chr7:75589565-75589584 | MsG0780040296.01.T01:CDS | 30.0% |
| !!! | CATCTAATTTTTTTGTGAGG+AGG | + | Chr7:75588838-75588857 | None:intergenic | 30.0% |
| AAAGAGGGAGGAAAAATGAA+CGG | + | Chr7:75587981-75588000 | None:intergenic | 35.0% | |
| ACATACTCTGACATAGAAAC+CGG | + | Chr7:75588253-75588272 | None:intergenic | 35.0% | |
| GCCATAAGGTTTAGAAATTC+GGG | + | Chr7:75589348-75589367 | None:intergenic | 35.0% | |
| TCAAATTGAAGATGTATGGC+CGG | - | Chr7:75589034-75589053 | MsG0780040296.01.T01:intron | 35.0% | |
| TCCCGAATTTCTAAACCTTA+TGG | - | Chr7:75589344-75589363 | MsG0780040296.01.T01:intron | 35.0% | |
| ! | ACATCTTCAATTTGAAGTGG+TGG | + | Chr7:75589029-75589048 | None:intergenic | 35.0% |
| ! | CTTTCATTTTCCTTGCCATA+AGG | + | Chr7:75589362-75589381 | None:intergenic | 35.0% |
| !! | AGTTGATGAAATGATTCGAG+AGG | - | Chr7:75589508-75589527 | MsG0780040296.01.T01:intron | 35.0% |
| ATAAACGAAGTAGATGCCGA+CGG | - | Chr7:75589303-75589322 | MsG0780040296.01.T01:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | Chr7:75588708-75588727 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | Chr7:75588711-75588730 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | - | Chr7:75588719-75588738 | MsG0780040296.01.T01:intron | 40.0% | |
| TCAGAGTATGTACGTCAATG+CGG | - | Chr7:75588262-75588281 | MsG0780040296.01.T01:intron | 40.0% | |
| TCCAGTGTTCTTGATTGTGT+CGG | - | Chr7:75589155-75589174 | MsG0780040296.01.T01:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | Chr7:75588685-75588704 | None:intergenic | 40.0% | |
| TTGAAGGTTCCATCACAACA+AGG | - | Chr7:75589218-75589237 | MsG0780040296.01.T01:intron | 40.0% | |
| ! | AGTAAGCTTTTCACCAAGGT+TGG | + | Chr7:75589480-75589499 | None:intergenic | 40.0% |
| ! | CTTCAATTTGAAGTGGTGGT+CGG | + | Chr7:75589025-75589044 | None:intergenic | 40.0% |
| ATTAGGCCAGAATCCAACAG+AGG | - | Chr7:75589263-75589282 | MsG0780040296.01.T01:intron | 45.0% | |
| ATTCGAGAGGCTGATGTTGA+TGG | - | Chr7:75589521-75589540 | MsG0780040296.01.T01:CDS | 45.0% | |
| GTGTTCGACAAGGATCAGAA+TGG | - | Chr7:75589420-75589439 | MsG0780040296.01.T01:intron | 45.0% | |
| TCCGACACAATCAAGAACAC+TGG | + | Chr7:75589159-75589178 | None:intergenic | 45.0% | |
| TTCCATCACAACAAGGAGCT+TGG | - | Chr7:75589225-75589244 | MsG0780040296.01.T01:intron | 45.0% | |
| ! | AGCGTTTAGAGTGTTCGACA+AGG | - | Chr7:75589410-75589429 | MsG0780040296.01.T01:intron | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | Chr7:75588691-75588710 | None:intergenic | 45.0% |
| ! | ATCGATTGTGCCATTACCGT+CGG | + | Chr7:75589322-75589341 | None:intergenic | 45.0% |
| ! | CACCAAGGTTGGTCATTACA+TGG | + | Chr7:75589469-75589488 | None:intergenic | 45.0% |
| ! | CGTCAGTAAGCTTTTCACCA+AGG | + | Chr7:75589484-75589503 | None:intergenic | 45.0% |
| ! | TTCCAAGCTCCTTGTTGTGA+TGG | + | Chr7:75589230-75589249 | None:intergenic | 45.0% |
| AGCCACACCTCCTTGAATTG+TGG | - | Chr7:75588698-75588717 | MsG0780040296.01.T01:intron | 50.0% | |
| CGCCATGTAATGACCAACCT+TGG | - | Chr7:75589464-75589483 | MsG0780040296.01.T01:intron | 50.0% | |
| CTGACATAGAAACCGGTCAC+AGG | + | Chr7:75588246-75588265 | None:intergenic | 50.0% | |
| CTGGCCTAATGACCTCATCA+CGG | + | Chr7:75589253-75589272 | None:intergenic | 50.0% | |
| GAAGTAGATGCCGACGGTAA+TGG | - | Chr7:75589309-75589328 | MsG0780040296.01.T01:intron | 50.0% | |
| GGAACCGTGATGAGGTCATT+AGG | - | Chr7:75589246-75589265 | MsG0780040296.01.T01:intron | 50.0% | |
| GGTTGCACTAGCATTGCGAT+TGG | - | Chr7:75588948-75588967 | MsG0780040296.01.T01:intron | 50.0% | |
| GTCATGTATGTGTCGGACAC+CGG | + | Chr7:75589056-75589075 | None:intergenic | 50.0% | |
| TCAATGTCGTGACCTGTGAC+CGG | - | Chr7:75588231-75588250 | MsG0780040296.01.T01:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | Chr7:75588703-75588722 | None:intergenic | 50.0% | |
| ! | TCTTGTAGCTCTGCCTCTGT+TGG | + | Chr7:75589279-75589298 | None:intergenic | 50.0% |
| !! | GAGGCTGATGTTGATGGTGA+TGG | - | Chr7:75589527-75589546 | MsG0780040296.01.T01:CDS | 50.0% |
| AGGAGCTTGGAACCGTGATG+AGG | - | Chr7:75589238-75589257 | MsG0780040296.01.T01:intron | 55.0% | |
| GCTCTGCCTCTGTTGGATTC+TGG | + | Chr7:75589272-75589291 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 75587870 | 75589595 | 75587870 | ID=MsG0780040296.01;Name=MsG0780040296.01 |
| Chr7 | mRNA | 75587870 | 75589595 | 75587870 | ID=MsG0780040296.01.T01;Parent=MsG0780040296.01;Name=MsG0780040296.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|3|0|112 |
| Chr7 | exon | 75589516 | 75589595 | 75589516 | ID=MsG0780040296.01.T01:exon:14849;Parent=MsG0780040296.01.T01 |
| Chr7 | exon | 75588141 | 75588241 | 75588141 | ID=MsG0780040296.01.T01:exon:14848;Parent=MsG0780040296.01.T01 |
| Chr7 | exon | 75587870 | 75588027 | 75587870 | ID=MsG0780040296.01.T01:exon:14847;Parent=MsG0780040296.01.T01 |
| Chr7 | CDS | 75589516 | 75589595 | 75589516 | ID=MsG0780040296.01.T01:cds;Parent=MsG0780040296.01.T01 |
| Chr7 | CDS | 75588141 | 75588241 | 75588141 | ID=MsG0780040296.01.T01:cds;Parent=MsG0780040296.01.T01 |
| Chr7 | CDS | 75587870 | 75588027 | 75587870 | ID=MsG0780040296.01.T01:cds;Parent=MsG0780040296.01.T01 |
| Gene Sequence |
| Protein sequence |
