Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044554.01.T01 | GAU17572.1 | 36.861 | 274 | 106 | 8 | 5 | 212 | 4 | 276 | 1.49E-34 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044554.01.T01 | A0A2Z6LNG6 | 36.861 | 274 | 106 | 8 | 5 | 212 | 4 | 276 | 7.12e-35 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0880044554.01 | 0.840908 | 6.550537e-58 | 9.467757e-55 |
| MsG0080047944.01 | MsG0880044554.01 | 0.801314 | 9.546850e-49 | 4.545017e-46 |
| MsG0080047957.01 | MsG0880044554.01 | 0.804319 | 2.286651e-49 | 1.175396e-46 |
| MsG0080047959.01 | MsG0880044554.01 | 0.808272 | 3.359644e-50 | 1.912735e-47 |
| MsG0080048461.01 | MsG0880044554.01 | 0.819375 | 1.200186e-52 | 9.218896e-50 |
| MsG0080048462.01 | MsG0880044554.01 | 0.824208 | 9.139557e-54 | 8.042542e-51 |
| MsG0080048856.01 | MsG0880044554.01 | 0.806993 | 6.278934e-50 | 3.457008e-47 |
| MsG0080048874.01 | MsG0880044554.01 | 0.829844 | 4.099858e-55 | 4.246891e-52 |
| MsG0180000145.01 | MsG0880044554.01 | 0.826750 | 2.285192e-54 | 2.162249e-51 |
| MsG0180000195.01 | MsG0880044554.01 | 0.805815 | 1.112275e-49 | 5.941995e-47 |
| MsG0180000334.01 | MsG0880044554.01 | 0.813681 | 2.262770e-51 | 1.487485e-48 |
| MsG0180000335.01 | MsG0880044554.01 | 0.818497 | 1.900377e-52 | 1.424873e-49 |
| MsG0180000470.01 | MsG0880044554.01 | 0.851166 | 1.059474e-60 | 2.125494e-57 |
| MsG0180002089.01 | MsG0880044554.01 | 0.814714 | 1.338620e-51 | 9.049242e-49 |
| MsG0180002195.01 | MsG0880044554.01 | 0.842379 | 2.680627e-58 | 4.057163e-55 |
| MsG0180002282.01 | MsG0880044554.01 | 0.827113 | 1.871206e-54 | 1.789393e-51 |
| MsG0880043941.01 | MsG0880044554.01 | 0.803553 | 3.299911e-49 | 1.663269e-46 |
| MsG0880043992.01 | MsG0880044554.01 | 0.802180 | 6.340014e-49 | 3.085217e-46 |
| MsG0880044237.01 | MsG0880044554.01 | 0.813480 | 2.505717e-51 | 1.638276e-48 |
| MsG0880044415.01 | MsG0880044554.01 | 0.832933 | 7.125316e-56 | 8.082470e-53 |
| MsG0880044416.01 | MsG0880044554.01 | 0.821771 | 3.382001e-53 | 2.777442e-50 |
| MsG0880044510.01 | MsG0880044554.01 | 0.806443 | 8.206292e-50 | 4.454762e-47 |
| MsG0880044542.01 | MsG0880044554.01 | 0.894935 | 1.543802e-75 | 1.567967e-71 |
| MsG0880044554.01 | MsG0880044574.01 | 0.830028 | 3.698222e-55 | 3.850352e-52 |
| MsG0880044554.01 | MsG0880044644.01 | 0.803186 | 3.931552e-49 | 1.962938e-46 |
| MsG0880044554.01 | MsG0880045257.01 | 0.800082 | 1.702977e-48 | 7.858201e-46 |
| MsG0880044554.01 | MsG0880045639.01 | 0.804647 | 1.954081e-49 | 1.012977e-46 |
| MsG0880044554.01 | MsG0880045653.01 | 0.804832 | 1.787273e-49 | 9.310032e-47 |
| MsG0880044554.01 | MsG0880045691.01 | 0.804187 | 2.436021e-49 | 1.247940e-46 |
| MsG0880044554.01 | MsG0880045736.01 | 0.802840 | 4.635817e-49 | 2.294335e-46 |
| MsG0880044554.01 | MsG0880046012.01 | 0.800169 | 1.634794e-48 | 7.560096e-46 |
| MsG0880044554.01 | MsG0880046264.01 | 0.800719 | 1.262948e-48 | 5.922552e-46 |
| MsG0880044554.01 | MsG0880046479.01 | 0.815910 | 7.257200e-52 | 5.068252e-49 |
| MsG0880044554.01 | MsG0880046531.01 | 0.810006 | 1.428050e-50 | 8.511659e-48 |
| MsG0880044554.01 | MsG0880047191.01 | 0.817673 | 2.918618e-52 | 2.139260e-49 |
| MsG0180002870.01 | MsG0880044554.01 | 0.809337 | 1.989105e-50 | 1.164733e-47 |
| MsG0180003669.01 | MsG0880044554.01 | 0.850638 | 1.491590e-60 | 2.941024e-57 |
| MsG0180003920.01 | MsG0880044554.01 | 0.801763 | 7.723339e-49 | 3.718670e-46 |
| MsG0180004264.01 | MsG0880044554.01 | 0.843597 | 1.270525e-58 | 1.997982e-55 |
| MsG0180005050.01 | MsG0880044554.01 | 0.801830 | 7.482108e-49 | 3.608877e-46 |
| MsG0180005185.01 | MsG0880044554.01 | 0.803848 | 2.866110e-49 | 1.455603e-46 |
| MsG0180005371.01 | MsG0880044554.01 | 0.815728 | 7.966234e-52 | 5.536584e-49 |
| MsG0780040296.01 | MsG0880044554.01 | 0.806714 | 7.193851e-50 | 3.932275e-47 |
| MsG0780040576.01 | MsG0880044554.01 | -0.832883 | 7.332221e-56 | 8.304587e-53 |
| MsG0780040788.01 | MsG0880044554.01 | 0.822739 | 2.015706e-53 | 1.701794e-50 |
| MsG0780041559.01 | MsG0880044554.01 | 0.806214 | 9.168497e-50 | 4.948386e-47 |
| MsG0880042301.01 | MsG0880044554.01 | 0.817567 | 3.083334e-52 | 2.253381e-49 |
| MsG0880042698.01 | MsG0880044554.01 | 0.802082 | 6.640356e-49 | 3.223432e-46 |
| MsG0880042800.01 | MsG0880044554.01 | 0.809340 | 1.986169e-50 | 1.163118e-47 |
| MsG0280010551.01 | MsG0880044554.01 | 0.824529 | 7.685195e-54 | 6.825198e-51 |
| MsG0280010698.01 | MsG0880044554.01 | 0.817697 | 2.882471e-52 | 2.114123e-49 |
| MsG0280010796.01 | MsG0880044554.01 | 0.817509 | 3.178431e-52 | 2.319285e-49 |
| MsG0280011014.01 | MsG0880044554.01 | 0.807181 | 5.731374e-50 | 3.170986e-47 |
| MsG0280011032.01 | MsG0880044554.01 | 0.801414 | 9.104920e-49 | 4.345538e-46 |
| MsG0280011086.01 | MsG0880044554.01 | 0.803874 | 2.830245e-49 | 1.438368e-46 |
| MsG0280011156.01 | MsG0880044554.01 | 0.828212 | 1.019115e-54 | 1.006344e-51 |
| MsG0280011258.01 | MsG0880044554.01 | 0.813752 | 2.182607e-51 | 1.437501e-48 |
| MsG0280011282.01 | MsG0880044554.01 | 0.815129 | 1.082864e-51 | 7.402504e-49 |
| MsG0280011318.01 | MsG0880044554.01 | 0.813312 | 2.727846e-51 | 1.775317e-48 |
| MsG0380011755.01 | MsG0880044554.01 | 0.818827 | 1.599325e-52 | 1.210101e-49 |
| MsG0380011759.01 | MsG0880044554.01 | 0.802003 | 6.893657e-49 | 3.339584e-46 |
| MsG0380012009.01 | MsG0880044554.01 | 0.814715 | 1.337528e-51 | 9.042227e-49 |
| MsG0380012471.01 | MsG0880044554.01 | 0.821075 | 4.894562e-53 | 3.942416e-50 |
| MsG0380012702.01 | MsG0880044554.01 | 0.813445 | 2.550595e-51 | 1.666048e-48 |
| MsG0380013475.01 | MsG0880044554.01 | 0.812971 | 3.241517e-51 | 2.090076e-48 |
| MsG0380013834.01 | MsG0880044554.01 | 0.811483 | 6.844087e-51 | 4.241721e-48 |
| MsG0380014573.01 | MsG0880044554.01 | 0.820380 | 7.073439e-53 | 5.588199e-50 |
| MsG0380014701.01 | MsG0880044554.01 | 0.810530 | 1.100920e-50 | 6.652258e-48 |
| MsG0380014703.01 | MsG0880044554.01 | 0.800866 | 1.178865e-48 | 5.549128e-46 |
| MsG0680031114.01 | MsG0880044554.01 | 0.811241 | 7.724887e-51 | 4.756905e-48 |
| MsG0680032801.01 | MsG0880044554.01 | 0.827555 | 1.466368e-54 | 1.420391e-51 |
| MsG0680032844.01 | MsG0880044554.01 | 0.834811 | 2.415005e-56 | 2.897950e-53 |
| MsG0680033187.01 | MsG0880044554.01 | 0.809122 | 2.211519e-50 | 1.287588e-47 |
| MsG0680033228.01 | MsG0880044554.01 | 0.826839 | 2.176072e-54 | 2.064282e-51 |
| MsG0680033379.01 | MsG0880044554.01 | 0.840237 | 9.811046e-58 | 1.388909e-54 |
| MsG0680033792.01 | MsG0880044554.01 | 0.828819 | 7.271374e-55 | 7.307687e-52 |
| MsG0680034187.01 | MsG0880044554.01 | 0.806435 | 8.239730e-50 | 4.471878e-47 |
| MsG0680035346.01 | MsG0880044554.01 | 0.807473 | 4.968956e-50 | 2.770226e-47 |
| MsG0680035389.01 | MsG0880044554.01 | 0.812858 | 3.431058e-51 | 2.205652e-48 |
| MsG0680035475.01 | MsG0880044554.01 | 0.827162 | 1.821487e-54 | 1.744409e-51 |
| MsG0480018964.01 | MsG0880044554.01 | 0.806563 | 7.739962e-50 | 4.214518e-47 |
| MsG0480019442.01 | MsG0880044554.01 | 0.800638 | 1.312155e-48 | 6.140815e-46 |
| MsG0480020634.01 | MsG0880044554.01 | 0.820049 | 8.422045e-53 | 6.593021e-50 |
| MsG0480020907.01 | MsG0880044554.01 | 0.805273 | 1.445287e-49 | 7.613818e-47 |
| MsG0480021274.01 | MsG0880044554.01 | 0.823328 | 1.469287e-53 | 1.261125e-50 |
| MsG0480021350.01 | MsG0880044554.01 | 0.852708 | 3.865296e-61 | 8.147104e-58 |
| MsG0480021558.01 | MsG0880044554.01 | 0.810173 | 1.314594e-50 | 7.869164e-48 |
| MsG0480021853.01 | MsG0880044554.01 | 0.801741 | 7.805445e-49 | 3.756071e-46 |
| MsG0480022259.01 | MsG0880044554.01 | 0.800674 | 1.289851e-48 | 6.042084e-46 |
| MsG0480022482.01 | MsG0880044554.01 | 0.805743 | 1.152140e-49 | 6.143751e-47 |
| MsG0480022615.01 | MsG0880044554.01 | -0.838187 | 3.337499e-57 | 4.435806e-54 |
| MsG0480022827.01 | MsG0880044554.01 | 0.804808 | 1.808682e-49 | 9.415602e-47 |
| MsG0480022951.01 | MsG0880044554.01 | 0.801542 | 8.572232e-49 | 4.104503e-46 |
| MsG0480023248.01 | MsG0880044554.01 | 0.810599 | 1.064063e-50 | 6.441618e-48 |
| MsG0480023654.01 | MsG0880044554.01 | 0.834894 | 2.301476e-56 | 2.768642e-53 |
| MsG0480023707.01 | MsG0880044554.01 | 0.807637 | 4.585603e-50 | 2.567332e-47 |
| MsG0480023718.01 | MsG0880044554.01 | 0.828185 | 1.034625e-54 | 1.020841e-51 |
| MsG0480024003.01 | MsG0880044554.01 | 0.819047 | 1.425760e-52 | 1.085388e-49 |
| MsG0480024005.01 | MsG0880044554.01 | 0.808080 | 3.691361e-50 | 2.090854e-47 |
| MsG0580024038.01 | MsG0880044554.01 | 0.805198 | 1.498528e-49 | 7.879315e-47 |
| MsG0580024621.01 | MsG0880044554.01 | 0.821855 | 3.234574e-53 | 2.662779e-50 |
| MsG0580024632.01 | MsG0880044554.01 | 0.811913 | 5.518596e-51 | 3.459121e-48 |
| MsG0580025022.01 | MsG0880044554.01 | 0.803051 | 4.192618e-49 | 2.085973e-46 |
| MsG0580025135.01 | MsG0880044554.01 | 0.813402 | 2.606496e-51 | 1.700565e-48 |
| MsG0580025555.01 | MsG0880044554.01 | 0.809718 | 1.647273e-50 | 9.744114e-48 |
| MsG0580025758.01 | MsG0880044554.01 | 0.813613 | 2.342548e-51 | 1.537113e-48 |
| MsG0580026002.01 | MsG0880044554.01 | 0.808632 | 2.815464e-50 | 1.617909e-47 |
| MsG0580026040.01 | MsG0880044554.01 | 0.813866 | 2.060335e-51 | 1.361191e-48 |
| MsG0380015566.01 | MsG0880044554.01 | 0.827999 | 1.146778e-54 | 1.125409e-51 |
| MsG0380015589.01 | MsG0880044554.01 | 0.804277 | 2.333711e-49 | 1.198290e-46 |
| MsG0380015677.01 | MsG0880044554.01 | 0.837376 | 5.390643e-57 | 6.988368e-54 |
| MsG0380015720.01 | MsG0880044554.01 | 0.826178 | 3.128813e-54 | 2.912638e-51 |
| MsG0380016064.01 | MsG0880044554.01 | 0.803582 | 3.254961e-49 | 1.641862e-46 |
| MsG0380016475.01 | MsG0880044554.01 | 0.870008 | 2.017732e-66 | 7.728509e-63 |
| MsG0380016765.01 | MsG0880044554.01 | 0.809530 | 1.807725e-50 | 1.063995e-47 |
| MsG0380016910.01 | MsG0880044554.01 | 0.805562 | 1.257558e-49 | 6.674115e-47 |
| MsG0380017140.01 | MsG0880044554.01 | 0.801351 | 9.381400e-49 | 4.470474e-46 |
| MsG0380017233.01 | MsG0880044554.01 | 0.809780 | 1.597418e-50 | 9.464925e-48 |
| MsG0380017266.01 | MsG0880044554.01 | -0.833870 | 4.160205e-56 | 4.853858e-53 |
| MsG0380017326.01 | MsG0880044554.01 | 0.828946 | 6.774735e-55 | 6.833685e-52 |
| MsG0480018163.01 | MsG0880044554.01 | 0.805269 | 1.448042e-49 | 7.627646e-47 |
| MsG0480018183.01 | MsG0880044554.01 | 0.804693 | 1.911611e-49 | 9.921445e-47 |
| MsG0580026165.01 | MsG0880044554.01 | 0.800008 | 1.763194e-48 | 8.120616e-46 |
| MsG0580027320.01 | MsG0880044554.01 | 0.839014 | 2.041541e-57 | 2.782703e-54 |
| MsG0580027650.01 | MsG0880044554.01 | 0.812415 | 4.288606e-51 | 2.725257e-48 |
| MsG0580027679.01 | MsG0880044554.01 | 0.830685 | 2.554940e-55 | 2.711516e-52 |
| MsG0580027687.01 | MsG0880044554.01 | 0.810253 | 1.263490e-50 | 7.579225e-48 |
| MsG0580027688.01 | MsG0880044554.01 | 0.828482 | 8.773649e-55 | 8.731950e-52 |
| MsG0580027745.01 | MsG0880044554.01 | 0.813193 | 2.897396e-51 | 1.879459e-48 |
| MsG0580027767.01 | MsG0880044554.01 | 0.811288 | 7.544168e-51 | 4.651317e-48 |
| MsG0580027829.01 | MsG0880044554.01 | 0.801540 | 8.581283e-49 | 4.108626e-46 |
| MsG0580027832.01 | MsG0880044554.01 | 0.808392 | 3.168261e-50 | 1.809405e-47 |
| MsG0580027833.01 | MsG0880044554.01 | 0.832155 | 1.110610e-55 | 1.230908e-52 |
| MsG0580027922.01 | MsG0880044554.01 | 0.821452 | 4.008551e-53 | 3.262320e-50 |
| MsG0580028517.01 | MsG0880044554.01 | 0.802395 | 5.725379e-49 | 2.801636e-46 |
| MsG0580028527.01 | MsG0880044554.01 | 0.803771 | 2.973284e-49 | 1.506976e-46 |
| MsG0580028592.01 | MsG0880044554.01 | 0.801563 | 8.489531e-49 | 4.067033e-46 |
| MsG0580028990.01 | MsG0880044554.01 | 0.815732 | 7.950540e-52 | 5.526264e-49 |
| MsG0580029204.01 | MsG0880044554.01 | 0.812532 | 4.044045e-51 | 2.577731e-48 |
| MsG0580029554.01 | MsG0880044554.01 | 0.854075 | 1.566578e-61 | 3.457824e-58 |
| MsG0680030316.01 | MsG0880044554.01 | 0.831556 | 1.561345e-55 | 1.700424e-52 |
| MsG0680030447.01 | MsG0880044554.01 | 0.806918 | 6.513610e-50 | 3.579294e-47 |
| MsG0680030656.01 | MsG0880044554.01 | 0.809433 | 1.896424e-50 | 1.113319e-47 |
| MsG0680030667.01 | MsG0880044554.01 | 0.810553 | 1.088479e-50 | 6.581258e-48 |
| MsG0680030672.01 | MsG0880044554.01 | 0.819884 | 9.185635e-53 | 7.157279e-50 |
| MsG0280006456.01 | MsG0880044554.01 | 0.835830 | 1.335489e-56 | 1.652360e-53 |
| MsG0280007072.01 | MsG0880044554.01 | 0.806089 | 9.741426e-50 | 5.240642e-47 |
| MsG0280007335.01 | MsG0880044554.01 | 0.800185 | 1.622898e-48 | 7.508167e-46 |
| MsG0280007955.01 | MsG0880044554.01 | 0.803792 | 2.943533e-49 | 1.492732e-46 |
| MsG0280008112.01 | MsG0880044554.01 | 0.801942 | 7.096491e-49 | 3.432464e-46 |
| MsG0280008615.01 | MsG0880044554.01 | 0.847138 | 1.397711e-59 | 2.460888e-56 |
| MsG0280008894.01 | MsG0880044554.01 | 0.816267 | 6.037777e-52 | 4.258520e-49 |
| MsG0280009748.01 | MsG0880044554.01 | 0.803425 | 3.507149e-49 | 1.761861e-46 |
| MsG0280009813.01 | MsG0880044554.01 | 0.832264 | 1.043899e-55 | 1.160616e-52 |
| MsG0280009868.01 | MsG0880044554.01 | 0.800199 | 1.612227e-48 | 7.461331e-46 |
| MsG0280010389.01 | MsG0880044554.01 | 0.809976 | 1.449647e-50 | 8.633381e-48 |
| MsG0280010443.01 | MsG0880044554.01 | 0.838999 | 2.059316e-57 | 2.805807e-54 |
| MsG0280010491.01 | MsG0880044554.01 | 0.822378 | 2.445594e-53 | 2.043622e-50 |
| MsG0280010510.01 | MsG0880044554.01 | 0.815137 | 1.078348e-51 | 7.373159e-49 |
| MsG0680035692.01 | MsG0880044554.01 | 0.809282 | 2.043476e-50 | 1.194836e-47 |
| MsG0680035828.01 | MsG0880044554.01 | 0.818630 | 1.772727e-52 | 1.333970e-49 |
| MsG0780036348.01 | MsG0880044554.01 | 0.801569 | 8.466059e-49 | 4.056363e-46 |
| MsG0780036477.01 | MsG0880044554.01 | 0.832643 | 8.409452e-56 | 9.456989e-53 |
| MsG0780036498.01 | MsG0880044554.01 | 0.832246 | 1.054497e-55 | 1.171827e-52 |
| MsG0780036719.01 | MsG0880044554.01 | 0.812039 | 5.181136e-51 | 3.258696e-48 |
| MsG0780036810.01 | MsG0880044554.01 | 0.800894 | 1.163250e-48 | 5.479754e-46 |
| MsG0780037054.01 | MsG0880044554.01 | 0.808456 | 3.070323e-50 | 1.756422e-47 |
| MsG0780038386.01 | MsG0880044554.01 | 0.837888 | 3.983684e-57 | 5.246990e-54 |
| MsG0780038424.01 | MsG0880044554.01 | 0.818035 | 2.418733e-52 | 1.790429e-49 |
| MsG0780038439.01 | MsG0880044554.01 | 0.816891 | 4.376831e-52 | 3.140021e-49 |
| MsG0780038602.01 | MsG0880044554.01 | 0.806667 | 7.358942e-50 | 4.017451e-47 |
| MsG0780038827.01 | MsG0880044554.01 | 0.805971 | 1.031691e-49 | 5.533595e-47 |
| MsG0780039059.01 | MsG0880044554.01 | 0.800684 | 1.283956e-48 | 6.015782e-46 |
| MsG0780039170.01 | MsG0880044554.01 | 0.800220 | 1.596065e-48 | 7.390790e-46 |
| MsG0780039252.01 | MsG0880044554.01 | 0.819171 | 1.335713e-52 | 1.020258e-49 |
| MsG0780039423.01 | MsG0880044554.01 | 0.812140 | 4.923819e-51 | 3.105662e-48 |
| MsG0780039655.01 | MsG0880044554.01 | 0.803178 | 3.946352e-49 | 1.969939e-46 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044554.01.T01 | MTR_1g042160 | 32.107 | 299 | 117 | 8 | 1 | 214 | 1 | 298 | 2.87e-34 | 124 |
| MsG0880044554.01.T01 | MTR_7g107160 | 30.363 | 303 | 104 | 8 | 9 | 209 | 129 | 426 | 2.90e-26 | 105 |
| MsG0880044554.01.T01 | MTR_7g107200 | 34.591 | 159 | 61 | 4 | 1 | 116 | 1 | 159 | 2.45e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACACTGCTAATATGTTTC+AGG | 0.178138 | 8:-44267251 | MsG0880044554.01.T01:CDS |
| CCAAAGTCTCGACCACATTT+TGG | 0.217526 | 8:+44266009 | None:intergenic |
| TTTGGAAAAGAACAGTTATT+TGG | 0.252160 | 8:-44265713 | MsG0880044554.01.T01:intron |
| CGTTGGCCTTCTTCTAGTTC+TGG | 0.287736 | 8:+44266032 | None:intergenic |
| GAATGGGCGTTCACCGCTTT+GGG | 0.323269 | 8:-44265873 | MsG0880044554.01.T01:CDS |
| GGAATGGGCGTTCACCGCTT+TGG | 0.324343 | 8:-44265874 | MsG0880044554.01.T01:CDS |
| TCTCTCACCTCTTTCTCTTA+AGG | 0.339494 | 8:+44265835 | None:intergenic |
| GTGAAGGATGCTTGTATTGT+TGG | 0.355564 | 8:-44266138 | MsG0880044554.01.T01:CDS |
| TGATGCAGCAAGAGACTTGT+TGG | 0.368200 | 8:-44265591 | MsG0880044554.01.T01:CDS |
| TCTCTCACTTGAATAAGATT+AGG | 0.386650 | 8:-44267459 | MsG0880044554.01.T01:CDS |
| CCAAAATGTGGTCGAGACTT+TGG | 0.387611 | 8:-44266009 | MsG0880044554.01.T01:CDS |
| AACTCGCAGGTTTAGGGAAT+GGG | 0.389237 | 8:-44265889 | MsG0880044554.01.T01:CDS |
| CTCTGAGCCTTTCATCTTGG+CGG | 0.423222 | 8:-44267428 | MsG0880044554.01.T01:CDS |
| CCTTCTTCTAGTTCTGGCTC+TGG | 0.429903 | 8:+44266038 | None:intergenic |
| TTTATTTCCTTAAGAGAAAG+AGG | 0.432850 | 8:-44265842 | MsG0880044554.01.T01:intron |
| TTTGAAGCAGTTAAGTTAGC+TGG | 0.439365 | 8:+44266066 | None:intergenic |
| GGTCGAGACTTTGGATTTCA+AGG | 0.447344 | 8:-44266000 | MsG0880044554.01.T01:CDS |
| CAGTTATTTGGAGAAATTGA+AGG | 0.448720 | 8:-44265701 | MsG0880044554.01.T01:CDS |
| GTTAGAATTGGAAAGGCTAA+TGG | 0.457549 | 8:-44265642 | MsG0880044554.01.T01:CDS |
| TTGAAGGAGGCGGAAAACTA+AGG | 0.459276 | 8:-44265685 | MsG0880044554.01.T01:CDS |
| GGTAGCTCTAGAGTTAGAAT+TGG | 0.468868 | 8:-44265654 | MsG0880044554.01.T01:CDS |
| ATACTCTGAGCCTTTCATCT+TGG | 0.472159 | 8:-44267431 | MsG0880044554.01.T01:CDS |
| TTCATCTTGGCGGCTATCCA+TGG | 0.489999 | 8:-44267418 | MsG0880044554.01.T01:intron |
| AAACTCGCAGGTTTAGGGAA+TGG | 0.505546 | 8:-44265890 | MsG0880044554.01.T01:CDS |
| GTCGAGACTTTGGATTTCAA+GGG | 0.521430 | 8:-44265999 | MsG0880044554.01.T01:intron |
| TTTGGAGAAATTGAAGGAGG+CGG | 0.535745 | 8:-44265695 | MsG0880044554.01.T01:CDS |
| CTGAAGAGGGTTTATTGTGA+AGG | 0.542263 | 8:-44266154 | MsG0880044554.01.T01:intron |
| GCCAGCAAGACACTTACAAA+AGG | 0.544024 | 8:-44267178 | MsG0880044554.01.T01:intron |
| TGGATAGCCGCCAAGATGAA+AGG | 0.555590 | 8:+44267421 | None:intergenic |
| CCAGAGCCAGAACTAGAAGA+AGG | 0.572474 | 8:-44266038 | MsG0880044554.01.T01:CDS |
| TGAAGGAGGCGGAAAACTAA+GGG | 0.572603 | 8:-44265684 | MsG0880044554.01.T01:CDS |
| CGAGCGATGAGAAGTTCACA+TGG | 0.574026 | 8:-44267495 | MsG0880044554.01.T01:CDS |
| TACACTGCTAATATGTTTCA+GGG | 0.579049 | 8:-44267250 | MsG0880044554.01.T01:CDS |
| CTGCTAATATGTTTCAGGGA+TGG | 0.579409 | 8:-44267246 | MsG0880044554.01.T01:CDS |
| CTCTAGAGTTAGAATTGGAA+AGG | 0.585395 | 8:-44265649 | MsG0880044554.01.T01:CDS |
| TAACTTAACTGCTTCAAACA+AGG | 0.609206 | 8:-44266061 | MsG0880044554.01.T01:CDS |
| CGGAAAACTAAGGGATAATG+TGG | 0.621004 | 8:-44265675 | MsG0880044554.01.T01:CDS |
| AGAAGGCCAACGCCAAAATG+TGG | 0.623253 | 8:-44266021 | MsG0880044554.01.T01:CDS |
| TTATTTGGAGAAATTGAAGG+AGG | 0.644664 | 8:-44265698 | MsG0880044554.01.T01:CDS |
| ATAAAGAACTCTGCCCAAAG+CGG | 0.731605 | 8:+44265860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAATCTTCAAAAAATTT+GGG | - | Chr8:44267291-44267310 | MsG0880044554.01.T01:CDS | 15.0% |
| !! | TATTTGGTTAAAATAAGTTT+AGG | + | Chr8:44266114-44266133 | None:intergenic | 15.0% |
| !!! | TATAACTTTTTTTGGTTATT+TGG | + | Chr8:44266130-44266149 | None:intergenic | 15.0% |
| !! | AATACAATAATGAGCAAAAA+TGG | + | Chr8:44266353-44266372 | None:intergenic | 20.0% |
| !! | ACATTAGAAGTTTAAAAAGT+CGG | + | Chr8:44266471-44266490 | None:intergenic | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | + | Chr8:44267328-44267347 | None:intergenic | 20.0% |
| !! | CATAAAGGAAAATAAGAATT+TGG | - | Chr8:44266690-44266709 | MsG0880044554.01.T01:intron | 20.0% |
| !! | GTAAGAATCTTCAAAAAATT+TGG | - | Chr8:44267290-44267309 | MsG0880044554.01.T01:CDS | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | - | Chr8:44267326-44267345 | MsG0880044554.01.T01:intron | 20.0% |
| !!! | CTAAGTTATTTTAGATTAGT+CGG | - | Chr8:44265979-44265998 | MsG0880044554.01.T01:intron | 20.0% |
| ! | AATAGTTTCGTATCATATGA+GGG | + | Chr8:44265720-44265739 | None:intergenic | 25.0% |
| ! | TGTTAGTAATTTCATAGAGT+TGG | - | Chr8:44266782-44266801 | MsG0880044554.01.T01:intron | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | + | Chr8:44265687-44265706 | None:intergenic | 25.0% |
| ! | TTCCAACTCTTTCTAATATT+GGG | + | Chr8:44266189-44266208 | None:intergenic | 25.0% |
| ! | TTGAATATTAGAGTACAACT+AGG | - | Chr8:44265956-44265975 | MsG0880044554.01.T01:intron | 25.0% |
| ! | TTTATTTCCTTAAGAGAAAG+AGG | - | Chr8:44267243-44267262 | MsG0880044554.01.T01:CDS | 25.0% |
| ! | TTTCCAACTCTTTCTAATAT+TGG | + | Chr8:44266190-44266209 | None:intergenic | 25.0% |
| ! | TTTGGAAAAGAACAGTTATT+TGG | - | Chr8:44267372-44267391 | MsG0880044554.01.T01:intron | 25.0% |
| !! | AAGTAAGGATTATTTGGTTT+CGG | - | Chr8:44266879-44266898 | MsG0880044554.01.T01:intron | 25.0% |
| !!! | TCTTTTTATTTTTCAGTCTC+AGG | - | Chr8:44266617-44266636 | MsG0880044554.01.T01:intron | 25.0% |
| CAATAGTTTCGTATCATATG+AGG | + | Chr8:44265721-44265740 | None:intergenic | 30.0% | |
| CAATGCAAGTAAGGATTATT+TGG | - | Chr8:44266873-44266892 | MsG0880044554.01.T01:intron | 30.0% | |
| CAGTTATTTGGAGAAATTGA+AGG | - | Chr8:44267384-44267403 | MsG0880044554.01.T01:intron | 30.0% | |
| GAATCTTCAAAAAATTTGGG+AGG | - | Chr8:44267294-44267313 | MsG0880044554.01.T01:intron | 30.0% | |
| GTATTTGTTCTATGTTGCAA+AGG | + | Chr8:44266577-44266596 | None:intergenic | 30.0% | |
| TAAACAAACAGCAAAAGAGA+CGG | + | Chr8:44266736-44266755 | None:intergenic | 30.0% | |
| TAACTTAACTGCTTCAAACA+AGG | - | Chr8:44267024-44267043 | MsG0880044554.01.T01:intron | 30.0% | |
| TACACTGCTAATATGTTTCA+GGG | - | Chr8:44265835-44265854 | MsG0880044554.01.T01:intron | 30.0% | |
| TCTCTCACTTGAATAAGATT+AGG | - | Chr8:44265626-44265645 | MsG0880044554.01.T01:CDS | 30.0% | |
| TTATTTGGAGAAATTGAAGG+AGG | - | Chr8:44267387-44267406 | MsG0880044554.01.T01:intron | 30.0% | |
| TTCCCAATATTAGAAAGAGT+TGG | - | Chr8:44266184-44266203 | MsG0880044554.01.T01:intron | 30.0% | |
| TTGAACTCAAAGTTAGATTC+TGG | + | Chr8:44266856-44266875 | None:intergenic | 30.0% | |
| TTGCGCTCAAAAAATCATAA+AGG | - | Chr8:44266675-44266694 | MsG0880044554.01.T01:intron | 30.0% | |
| ! | AAAAAGTCGGAATTTAGAGT+TGG | + | Chr8:44266458-44266477 | None:intergenic | 30.0% |
| ! | AGTTAGATTCTGGAAAATTC+AGG | + | Chr8:44266846-44266865 | None:intergenic | 30.0% |
| ! | ATGATTTGTCTGTATCAATG+GGG | - | Chr8:44265769-44265788 | MsG0880044554.01.T01:intron | 30.0% |
| ! | ATTGTGTTTGACTTTGCTTT+AGG | - | Chr8:44265746-44265765 | MsG0880044554.01.T01:intron | 30.0% |
| ! | GATGATTTGTCTGTATCAAT+GGG | - | Chr8:44265768-44265787 | MsG0880044554.01.T01:intron | 30.0% |
| ! | TTCCTCTAGTAATGGAATAA+AGG | + | Chr8:44267132-44267151 | None:intergenic | 30.0% |
| !! | TCAAGAAGTGTCAATTTAGT+TGG | + | Chr8:44266821-44266840 | None:intergenic | 30.0% |
| AGAAAAAAACTCGCAGGTTT+AGG | - | Chr8:44267189-44267208 | MsG0880044554.01.T01:CDS | 35.0% | |
| AGGTCAAAAATCAAGACTCA+GGG | + | Chr8:44266078-44266097 | None:intergenic | 35.0% | |
| GAAAAAAACTCGCAGGTTTA+GGG | - | Chr8:44267190-44267209 | MsG0880044554.01.T01:CDS | 35.0% | |
| GAACATACTTCCTCTAGTAA+TGG | + | Chr8:44267140-44267159 | None:intergenic | 35.0% | |
| GTACACTGCTAATATGTTTC+AGG | - | Chr8:44265834-44265853 | MsG0880044554.01.T01:intron | 35.0% | |
| GTTAGAATTGGAAAGGCTAA+TGG | - | Chr8:44267443-44267462 | MsG0880044554.01.T01:CDS | 35.0% | |
| TAGGTCAAAAATCAAGACTC+AGG | + | Chr8:44266079-44266098 | None:intergenic | 35.0% | |
| TGTATTGTGCGTGAAATTTG+TGG | - | Chr8:44266367-44266386 | MsG0880044554.01.T01:intron | 35.0% | |
| ! | CTTTGAGTTCAATGCAAGTA+AGG | - | Chr8:44266864-44266883 | MsG0880044554.01.T01:intron | 35.0% |
| ! | GGATGATTTGTCTGTATCAA+TGG | - | Chr8:44265767-44265786 | MsG0880044554.01.T01:intron | 35.0% |
| ! | TGATTTGTCTGTATCAATGG+GGG | - | Chr8:44265770-44265789 | MsG0880044554.01.T01:intron | 35.0% |
| ! | TTTGAAGCAGTTAAGTTAGC+TGG | + | Chr8:44267022-44267041 | None:intergenic | 35.0% |
| !! | CTCTAGAGTTAGAATTGGAA+AGG | - | Chr8:44267436-44267455 | MsG0880044554.01.T01:CDS | 35.0% |
| !! | TAACTATACCTCTGAAGCAT+GGG | - | Chr8:44266257-44266276 | MsG0880044554.01.T01:intron | 35.0% |
| !! | TTAACTATACCTCTGAAGCA+TGG | - | Chr8:44266256-44266275 | MsG0880044554.01.T01:intron | 35.0% |
| !!! | TGATTTTTTGAGCGCAAACA+TGG | + | Chr8:44266672-44266691 | None:intergenic | 35.0% |
| AAACAGCAAAAGAGACGGAT+TGG | + | Chr8:44266731-44266750 | None:intergenic | 40.0% | |
| AAACGGTGAAGTACATGTAC+CGG | - | Chr8:44266285-44266304 | MsG0880044554.01.T01:intron | 40.0% | |
| ATAAAGAACTCTGCCCAAAG+CGG | + | Chr8:44267228-44267247 | None:intergenic | 40.0% | |
| ATACTCTGAGCCTTTCATCT+TGG | - | Chr8:44265654-44265673 | MsG0880044554.01.T01:CDS | 40.0% | |
| ATGAGTCACAGTAAGATTGC+AGG | - | Chr8:44266014-44266033 | MsG0880044554.01.T01:CDS | 40.0% | |
| CCTGACACAAAATAAGCGAA+GGG | + | Chr8:44267169-44267188 | None:intergenic | 40.0% | |
| CGGAAAACTAAGGGATAATG+TGG | - | Chr8:44267410-44267429 | MsG0880044554.01.T01:intron | 40.0% | |
| CTGAAGAGGGTTTATTGTGA+AGG | - | Chr8:44266931-44266950 | MsG0880044554.01.T01:intron | 40.0% | |
| CTGCTAATATGTTTCAGGGA+TGG | - | Chr8:44265839-44265858 | MsG0880044554.01.T01:intron | 40.0% | |
| CTTCACAATAAACCCTCTTC+AGG | + | Chr8:44266933-44266952 | None:intergenic | 40.0% | |
| GGCCTTTATTCCATTACTAG+AGG | - | Chr8:44267127-44267146 | MsG0880044554.01.T01:intron | 40.0% | |
| GTCGAGACTTTGGATTTCAA+GGG | - | Chr8:44267086-44267105 | MsG0880044554.01.T01:intron | 40.0% | |
| GTGAAGGATGCTTGTATTGT+TGG | - | Chr8:44266947-44266966 | MsG0880044554.01.T01:intron | 40.0% | |
| TCCAAAGCAGATTGAACACA+AGG | + | Chr8:44267358-44267377 | None:intergenic | 40.0% | |
| TCCTGACACAAAATAAGCGA+AGG | + | Chr8:44267170-44267189 | None:intergenic | 40.0% | |
| TCTCTCACCTCTTTCTCTTA+AGG | + | Chr8:44267253-44267272 | None:intergenic | 40.0% | |
| TTTGGAGAAATTGAAGGAGG+CGG | - | Chr8:44267390-44267409 | MsG0880044554.01.T01:intron | 40.0% | |
| ! | ACCTTTTGTAAGTGTCTTGC+TGG | + | Chr8:44265911-44265930 | None:intergenic | 40.0% |
| ! | ACTTTGGATTTCAAGGGTGT+AGG | - | Chr8:44267092-44267111 | MsG0880044554.01.T01:intron | 40.0% |
| ! | CTGAAGCATGGGTTGTAAAA+CGG | - | Chr8:44266268-44266287 | MsG0880044554.01.T01:intron | 40.0% |
| ! | GTTTAGGTTCAGAGTTCACT+AGG | + | Chr8:44266098-44266117 | None:intergenic | 40.0% |
| ! | TTTTACAACCCATGCTTCAG+AGG | + | Chr8:44266268-44266287 | None:intergenic | 40.0% |
| !! | GGTAGCTCTAGAGTTAGAAT+TGG | - | Chr8:44267431-44267450 | MsG0880044554.01.T01:CDS | 40.0% |
| AAACTCGCAGGTTTAGGGAA+TGG | - | Chr8:44267195-44267214 | MsG0880044554.01.T01:CDS | 45.0% | |
| AACGGTGAAGTACATGTACC+GGG | - | Chr8:44266286-44266305 | MsG0880044554.01.T01:intron | 45.0% | |
| AACTCGCAGGTTTAGGGAAT+GGG | - | Chr8:44267196-44267215 | MsG0880044554.01.T01:CDS | 45.0% | |
| CCAAAATGTGGTCGAGACTT+TGG | - | Chr8:44267076-44267095 | MsG0880044554.01.T01:intron | 45.0% | |
| GAGCTTCTTGATCCTGAAGA+GGG | - | Chr8:44266918-44266937 | MsG0880044554.01.T01:intron | 45.0% | |
| GCCAGCAAGACACTTACAAA+AGG | - | Chr8:44265907-44265926 | MsG0880044554.01.T01:intron | 45.0% | |
| GCCTTGTGTTCAATCTGCTT+TGG | - | Chr8:44267354-44267373 | MsG0880044554.01.T01:intron | 45.0% | |
| GGGTGTAGGACAAATAGAGA+AGG | - | Chr8:44267106-44267125 | MsG0880044554.01.T01:intron | 45.0% | |
| GGTCGAGACTTTGGATTTCA+AGG | - | Chr8:44267085-44267104 | MsG0880044554.01.T01:intron | 45.0% | |
| GTCAGGAGAAAAAAACTCGC+AGG | - | Chr8:44267183-44267202 | MsG0880044554.01.T01:CDS | 45.0% | |
| TGAAGGAGGCGGAAAACTAA+GGG | - | Chr8:44267401-44267420 | MsG0880044554.01.T01:intron | 45.0% | |
| TGAGCTTCTTGATCCTGAAG+AGG | - | Chr8:44266917-44266936 | MsG0880044554.01.T01:intron | 45.0% | |
| TGATGCAGCAAGAGACTTGT+TGG | - | Chr8:44267494-44267513 | MsG0880044554.01.T01:CDS | 45.0% | |
| TTGAAGGAGGCGGAAAACTA+AGG | - | Chr8:44267400-44267419 | MsG0880044554.01.T01:intron | 45.0% | |
| ! | CCAAAGTCTCGACCACATTT+TGG | + | Chr8:44267079-44267098 | None:intergenic | 45.0% |
| !!! | CCCTTCGCTTATTTTGTGTC+AGG | - | Chr8:44267166-44267185 | MsG0880044554.01.T01:intron | 45.0% |
| !!! | TTTAATTTTATAACTTTTTT+TGG | + | Chr8:44266138-44266157 | None:intergenic | 5.0% |
| AGAAGGCCAACGCCAAAATG+TGG | - | Chr8:44267064-44267083 | MsG0880044554.01.T01:intron | 50.0% | |
| CCAGAGCCAGAACTAGAAGA+AGG | - | Chr8:44267047-44267066 | MsG0880044554.01.T01:intron | 50.0% | |
| CGAGCGATGAGAAGTTCACA+TGG | - | Chr8:44265590-44265609 | MsG0880044554.01.T01:CDS | 50.0% | |
| CTCTGAGCCTTTCATCTTGG+CGG | - | Chr8:44265657-44265676 | MsG0880044554.01.T01:CDS | 50.0% | |
| TGGATAGCCGCCAAGATGAA+AGG | + | Chr8:44265667-44265686 | None:intergenic | 50.0% | |
| TGTCTGTATCAATGGGGGAC+AGG | - | Chr8:44265775-44265794 | MsG0880044554.01.T01:intron | 50.0% | |
| TTCATCTTGGCGGCTATCCA+TGG | - | Chr8:44265667-44265686 | MsG0880044554.01.T01:CDS | 50.0% | |
| !! | CCTTCTTCTAGTTCTGGCTC+TGG | + | Chr8:44267050-44267069 | None:intergenic | 50.0% |
| !! | CGTTGGCCTTCTTCTAGTTC+TGG | + | Chr8:44267056-44267075 | None:intergenic | 50.0% |
| !! | TCTCGACCACATTTTGGCGT+TGG | + | Chr8:44267073-44267092 | None:intergenic | 50.0% |
| GAATGGGCGTTCACCGCTTT+GGG | - | Chr8:44267212-44267231 | MsG0880044554.01.T01:CDS | 55.0% | |
| TACCGTACGCGTACCCAGTA+CGG | + | Chr8:44266319-44266338 | None:intergenic | 55.0% | |
| ACCCAGTACGGGTGTGTACC+CGG | + | Chr8:44266307-44266326 | None:intergenic | 60.0% | |
| ACCCGTACTGGGTACGCGTA+CGG | - | Chr8:44266314-44266333 | MsG0880044554.01.T01:intron | 60.0% | |
| ACCGGGTACACACCCGTACT+GGG | - | Chr8:44266303-44266322 | MsG0880044554.01.T01:intron | 60.0% | |
| ACCGTACGCGTACCCAGTAC+GGG | + | Chr8:44266318-44266337 | None:intergenic | 60.0% | |
| GGAATGGGCGTTCACCGCTT+TGG | - | Chr8:44267211-44267230 | MsG0880044554.01.T01:CDS | 60.0% | |
| GGGTACGCGTACGGTACTTG+TGG | - | Chr8:44266323-44266342 | MsG0880044554.01.T01:intron | 60.0% | |
| TACCGGGTACACACCCGTAC+TGG | - | Chr8:44266302-44266321 | MsG0880044554.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 44265574 | 44267533 | 44265574 | ID=MsG0880044554.01;Name=MsG0880044554.01 |
| Chr8 | mRNA | 44265574 | 44267533 | 44265574 | ID=MsG0880044554.01.T01;Parent=MsG0880044554.01;Name=MsG0880044554.01.T01;_AED=0.39;_eAED=0.43;_QI=0|0|0|1|1|1|5|0|214 |
| Chr8 | exon | 44267419 | 44267533 | 44267419 | ID=MsG0880044554.01.T01:exon:17830;Parent=MsG0880044554.01.T01 |
| Chr8 | exon | 44267179 | 44267310 | 44267179 | ID=MsG0880044554.01.T01:exon:17829;Parent=MsG0880044554.01.T01 |
| Chr8 | exon | 44266000 | 44266168 | 44266000 | ID=MsG0880044554.01.T01:exon:17828;Parent=MsG0880044554.01.T01 |
| Chr8 | exon | 44265843 | 44265919 | 44265843 | ID=MsG0880044554.01.T01:exon:17827;Parent=MsG0880044554.01.T01 |
| Chr8 | exon | 44265574 | 44265725 | 44265574 | ID=MsG0880044554.01.T01:exon:17826;Parent=MsG0880044554.01.T01 |
| Chr8 | CDS | 44267419 | 44267533 | 44267419 | ID=MsG0880044554.01.T01:cds;Parent=MsG0880044554.01.T01 |
| Chr8 | CDS | 44267179 | 44267310 | 44267179 | ID=MsG0880044554.01.T01:cds;Parent=MsG0880044554.01.T01 |
| Chr8 | CDS | 44266000 | 44266168 | 44266000 | ID=MsG0880044554.01.T01:cds;Parent=MsG0880044554.01.T01 |
| Chr8 | CDS | 44265843 | 44265919 | 44265843 | ID=MsG0880044554.01.T01:cds;Parent=MsG0880044554.01.T01 |
| Chr8 | CDS | 44265574 | 44265725 | 44265574 | ID=MsG0880044554.01.T01:cds;Parent=MsG0880044554.01.T01 |
| Gene Sequence |
| Protein sequence |
