AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017233.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017233.01.T01 MTR_3g103350 90.000 130 9 2 13 142 127 252 5.21e-77 231
MsG0380017233.01.T01 MTR_3g103350 90.000 130 9 2 13 142 127 252 7.76e-77 229
MsG0380017233.01.T01 MTR_3g103350 90.000 130 9 2 13 142 127 252 4.07e-76 231
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017233.01.T01 AT1G59520 61.538 130 40 3 13 142 127 246 4.16e-47 155
MsG0380017233.01.T01 AT1G59520 61.538 130 40 3 13 142 127 246 4.16e-47 155
MsG0380017233.01.T01 AT1G59520 61.538 130 40 3 13 142 127 246 8.85e-47 155
MsG0380017233.01.T01 AT1G59520 61.538 130 40 3 13 142 127 246 1.86e-46 155
MsG0380017233.01.T01 AT1G59520 61.538 130 40 3 13 142 127 246 1.99e-46 155
MsG0380017233.01.T01 AT1G59520 60.769 130 41 3 13 142 127 246 6.00e-46 154

Find 26 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACATTTACCTTATATATA+GGG 0.220686 3:-93838156 None:intergenic
ACTACATTTACCTTATATAT+AGG 0.247282 3:-93838157 None:intergenic
ATCTTTATCCCCTATATATA+AGG 0.309094 3:+93838147 MsG0380017233.01.T01:CDS
GATAAGTATTGATGGCATTA+AGG 0.357902 3:+93836901 MsG0380017233.01.T01:CDS
ATGTATCCCTCCCAGCTTGA+TGG 0.384464 3:-93838126 None:intergenic
TATATCTTTCTCTAGTCAAC+AGG 0.403251 3:+93838093 MsG0380017233.01.T01:CDS
GGAAACAACACCTGCTTATC+CGG 0.439105 3:+93839856 MsG0380017233.01.T01:CDS
TGGATTGTGATAAGTATTGA+TGG 0.454317 3:+93836893 MsG0380017233.01.T01:CDS
TCAATTGCAAAACATATATC+CGG 0.475756 3:-93839875 None:intergenic
GTTGTTCTTAATGCACATGA+TGG 0.482727 3:+93840387 MsG0380017233.01.T01:CDS
GTAGAACTAGTACAAACTTC+CGG 0.489726 3:-93840468 None:intergenic
AATTGAAAATTGACACGACT+TGG 0.495981 3:-93839706 None:intergenic
TTCTTCAGAACCATCAAGCT+GGG 0.515455 3:+93838116 MsG0380017233.01.T01:CDS
GGCCTTGGTATAGCATGAGT+TGG 0.516061 3:+93836873 None:intergenic
TTGTTCTTAATGCACATGAT+GGG 0.519594 3:+93840388 MsG0380017233.01.T01:CDS
AAACATATATCCGGATAAGC+AGG 0.524022 3:-93839866 None:intergenic
GGCAGCATTTCCTAGTGATA+AGG 0.526186 3:+93840410 MsG0380017233.01.T01:CDS
GTTCTTCAGAACCATCAAGC+TGG 0.528980 3:+93838115 MsG0380017233.01.T01:CDS
TACATTTACCTTATATATAG+GGG 0.540407 3:-93838155 None:intergenic
TATTACCACAGCATCAAAAG+TGG 0.546528 3:-93839909 None:intergenic
TCATTTGACACCTTATCACT+AGG 0.568955 3:-93840420 None:intergenic
TCAGAACCATCAAGCTGGGA+GGG 0.589611 3:+93838120 MsG0380017233.01.T01:CDS
TACTAGTGATGACTCCTCGC+CGG 0.591620 3:+93840449 MsG0380017233.01.T01:CDS
TTCAGAACCATCAAGCTGGG+AGG 0.645173 3:+93838119 MsG0380017233.01.T01:CDS
TGTTCTTAATGCACATGATG+GGG 0.675929 3:+93840389 MsG0380017233.01.T01:CDS
ACTAGTACAAACTTCCGGCG+AGG 0.726490 3:-93840463 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATTAAAAAAGTTATT+CGG - Chr3:93837056-93837075 None:intergenic 10.0%
!! AACTAAAGAAAAAAATAACA+TGG - Chr3:93838584-93838603 None:intergenic 15.0%
!! CTAAAATCATTTAAGTATAT+TGG + Chr3:93836985-93837004 MsG0380017233.01.T01:intron 15.0%
!! TTTAATGAATATTTGTTTAC+CGG + Chr3:93838179-93838198 MsG0380017233.01.T01:intron 15.0%
!! TTTATAAAGTTACTCTAATT+AGG - Chr3:93837960-93837979 None:intergenic 15.0%
!!! AAAATATTTTATGCAATACA+AGG + Chr3:93838020-93838039 MsG0380017233.01.T01:intron 15.0%
!!! ATATTTTTAGTGTTATCATT+AGG - Chr3:93839235-93839254 None:intergenic 15.0%
!!! CAAATTTTTTGAAAATCTAA+AGG - Chr3:93838665-93838684 None:intergenic 15.0%
!!! TATTTTTAGTGTTATCATTA+GGG - Chr3:93839234-93839253 None:intergenic 15.0%
!!! TCAAAAATCTATTTTTCTTT+GGG - Chr3:93838300-93838319 None:intergenic 15.0%
!!! TTCAAAAATCTATTTTTCTT+TGG - Chr3:93838301-93838320 None:intergenic 15.0%
!! AAAATAAAATAATGCTGAGT+TGG + Chr3:93839292-93839311 MsG0380017233.01.T01:intron 20.0%
!! ACTACATTTACCTTATATAT+AGG - Chr3:93838160-93838179 None:intergenic 20.0%
!! CTACATTTACCTTATATATA+GGG - Chr3:93838159-93838178 None:intergenic 20.0%
!! GATATAATAACAACATAGAT+TGG + Chr3:93837696-93837715 MsG0380017233.01.T01:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG + Chr3:93837589-93837608 MsG0380017233.01.T01:intron 20.0%
!! TACATTTACCTTATATATAG+GGG - Chr3:93838158-93838177 None:intergenic 20.0%
!! TACTACAAAAAAAGATACTA+AGG + Chr3:93840488-93840507 MsG0380017233.01.T01:CDS 20.0%
!! TCCTTAAAAAAAAATGTCTA+CGG + Chr3:93837348-93837367 MsG0380017233.01.T01:intron 20.0%
!! TGTTATATCATTAAAGAGAA+AGG + Chr3:93839759-93839778 MsG0380017233.01.T01:intron 20.0%
!! TTAAGTATCTAATATCCTTT+GGG + Chr3:93839973-93839992 MsG0380017233.01.T01:intron 20.0%
!! TTACAAACAATTACAAGTAA+AGG - Chr3:93838222-93838241 None:intergenic 20.0%
!! TTTAAGTATCTAATATCCTT+TGG + Chr3:93839972-93839991 MsG0380017233.01.T01:intron 20.0%
!!! AAATTTTTGGGTTATTATCT+GGG + Chr3:93838048-93838067 MsG0380017233.01.T01:intron 20.0%
!!! AGAATGCAAAAAGTATTTAA+GGG - Chr3:93840287-93840306 None:intergenic 20.0%
!!! ATACAAGGCTTTTAAATTTT+TGG + Chr3:93838035-93838054 MsG0380017233.01.T01:intron 20.0%
!!! ATTTTTGAATTAACTAAGAC+AGG + Chr3:93840002-93840021 MsG0380017233.01.T01:intron 20.0%
!!! TAAATTTTTGGGTTATTATC+TGG + Chr3:93838047-93838066 MsG0380017233.01.T01:intron 20.0%
!!! TACAAGGCTTTTAAATTTTT+GGG + Chr3:93838036-93838055 MsG0380017233.01.T01:intron 20.0%
!!! TTTGAATCTCATTTTATGTT+TGG + Chr3:93839945-93839964 MsG0380017233.01.T01:intron 20.0%
!!! TTTTGGTGAATTTGAAAATA+AGG + Chr3:93839061-93839080 MsG0380017233.01.T01:intron 20.0%
! AAATAAGTGCATCACTTAAT+TGG + Chr3:93837304-93837323 MsG0380017233.01.T01:intron 25.0%
! AACGAGTACATATTCTTTAA+TGG - Chr3:93840128-93840147 None:intergenic 25.0%
! AACTAGTAATTTCCTTATCA+AGG + Chr3:93838557-93838576 MsG0380017233.01.T01:intron 25.0%
! ACATGATTCACAAACAAAAA+AGG - Chr3:93840264-93840283 None:intergenic 25.0%
! ACCTTTATTGATATGTCTAT+AGG + Chr3:93839829-93839848 MsG0380017233.01.T01:intron 25.0%
! ATAATGACTTATAGCAAACA+AGG - Chr3:93838917-93838936 None:intergenic 25.0%
! ATCGGTTATTGCTTAAATAT+CGG + Chr3:93839182-93839201 MsG0380017233.01.T01:intron 25.0%
! ATCTTTATCCCCTATATATA+AGG + Chr3:93838147-93838166 MsG0380017233.01.T01:CDS 25.0%
! CACAAAAAGGAAATCTTAAT+AGG - Chr3:93838607-93838626 None:intergenic 25.0%
! CAGAAAGAAAGAAAAATCTA+AGG - Chr3:93837932-93837951 None:intergenic 25.0%
! GGTCACAATTTACAATAATT+GGG - Chr3:93838862-93838881 None:intergenic 25.0%
! TAAAGATAATCTAATTGCTG+TGG - Chr3:93837259-93837278 None:intergenic 25.0%
! TATTTATTTCATCCTATCTG+TGG + Chr3:93839610-93839629 MsG0380017233.01.T01:intron 25.0%
! TCAATTGCAAAACATATATC+CGG - Chr3:93839878-93839897 None:intergenic 25.0%
! TCCTATAGACATATCAATAA+AGG - Chr3:93839833-93839852 None:intergenic 25.0%
! TTACGCGTTAATAAAAATGT+GGG - Chr3:93840097-93840116 None:intergenic 25.0%
! TTCAAAAATATGATTCCCAA+AGG - Chr3:93839991-93840010 None:intergenic 25.0%
!! CTTTTCATGTTAATATTGGT+CGG + Chr3:93837510-93837529 MsG0380017233.01.T01:intron 25.0%
!! TGTATGATTTTATCCGTATA+TGG + Chr3:93837425-93837444 MsG0380017233.01.T01:intron 25.0%
!!! AAAAATCTAAGGCTTTGTTT+GGG - Chr3:93837921-93837940 None:intergenic 25.0%
!!! CAGAATGCAAAAAGTATTTA+AGG - Chr3:93840288-93840307 None:intergenic 25.0%
!!! CTAGCTTTTCATGTTAATAT+TGG + Chr3:93837506-93837525 MsG0380017233.01.T01:intron 25.0%
!!! CTTAAATACTTTTTGCATTC+TGG + Chr3:93840286-93840305 MsG0380017233.01.T01:intron 25.0%
!!! TCCGTAGACATTTTTTTTTA+AGG - Chr3:93837352-93837371 None:intergenic 25.0%
!!! TTAAGTCACTTTTATGTTTC+TGG + Chr3:93839440-93839459 MsG0380017233.01.T01:intron 25.0%
!!! TTTTCAATTGGACTCTAAAA+AGG + Chr3:93839720-93839739 MsG0380017233.01.T01:CDS 25.0%
AAATAACATGGACCTTGATA+AGG - Chr3:93838572-93838591 None:intergenic 30.0%
AATAAAAAATCCCCCTCATT+TGG - Chr3:93837791-93837810 None:intergenic 30.0%
AATTGAAAATTGACACGACT+TGG - Chr3:93839709-93839728 None:intergenic 30.0%
AGGTGTTTACTTATTATGTG+TGG + Chr3:93836921-93836940 MsG0380017233.01.T01:intron 30.0%
ATAAAAAATCCCCCTCATTT+GGG - Chr3:93837790-93837809 None:intergenic 30.0%
ATTAATAACACTGGCAAACA+TGG + Chr3:93839641-93839660 MsG0380017233.01.T01:intron 30.0%
ATTGATATGTCTATAGGAAG+TGG + Chr3:93839835-93839854 MsG0380017233.01.T01:intron 30.0%
CAGAATGTTTCAATCAGAAT+TGG - Chr3:93837985-93838004 None:intergenic 30.0%
GAACTCAAAAATTGTATTGG+GGG - Chr3:93837766-93837785 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG - Chr3:93837767-93837786 None:intergenic 30.0%
GGAAGTAAAGATAATTCAAC+CGG - Chr3:93838201-93838220 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG - Chr3:93837768-93837787 None:intergenic 30.0%
GGGTCACAATTTACAATAAT+TGG - Chr3:93838863-93838882 None:intergenic 30.0%
GTTACGCGTTAATAAAAATG+TGG - Chr3:93840098-93840117 None:intergenic 30.0%
TAAAAATGTGGGGAATTTCA+AGG - Chr3:93840086-93840105 None:intergenic 30.0%
TACGCGTTAATAAAAATGTG+GGG - Chr3:93840096-93840115 None:intergenic 30.0%
TATATCTTTCTCTAGTCAAC+AGG + Chr3:93838093-93838112 MsG0380017233.01.T01:CDS 30.0%
TCTAGATTTCTGTTGTTACA+AGG + Chr3:93838774-93838793 MsG0380017233.01.T01:intron 30.0%
TGGAAGAAATAGAAGACATT+GGG - Chr3:93837848-93837867 None:intergenic 30.0%
TTCTGTAAAGATATCGTATG+AGG - Chr3:93838948-93838967 None:intergenic 30.0%
TTGTTCTTAATGCACATGAT+GGG + Chr3:93840388-93840407 MsG0380017233.01.T01:CDS 30.0%
! AAGTCGTGTCAATTTTCAAT+TGG + Chr3:93839708-93839727 MsG0380017233.01.T01:CDS 30.0%
! TGGATAGCTTTTATGATGTT+AGG + Chr3:93837005-93837024 MsG0380017233.01.T01:intron 30.0%
! TTTGTTAACCCAAAACCTTT+TGG + Chr3:93838360-93838379 MsG0380017233.01.T01:intron 30.0%
!! GAAAAATCTAAGGCTTTGTT+TGG - Chr3:93837922-93837941 None:intergenic 30.0%
!! GATAAGTATTGATGGCATTA+AGG + Chr3:93836901-93836920 MsG0380017233.01.T01:CDS 30.0%
!! TGGATTGTGATAAGTATTGA+TGG + Chr3:93836893-93836912 MsG0380017233.01.T01:CDS 30.0%
!!! ACCATTTTTTAGGTCTTCTT+GGG + Chr3:93838511-93838530 MsG0380017233.01.T01:intron 30.0%
!!! GTTTATCCTGACCATTTTTT+AGG + Chr3:93838501-93838520 MsG0380017233.01.T01:intron 30.0%
!!! TCTCTTTTTTGTTATCCCTT+TGG + Chr3:93838976-93838995 MsG0380017233.01.T01:intron 30.0%
AAACATATATCCGGATAAGC+AGG - Chr3:93839869-93839888 None:intergenic 35.0%
AAACCTTAACTAGAAACCCA+TGG - Chr3:93838485-93838504 None:intergenic 35.0%
AAACTTCAATAGACGTGGAT+TGG + Chr3:93837103-93837122 MsG0380017233.01.T01:intron 35.0%
AACCACGAAGAAGCTAAATT+TGG - Chr3:93838884-93838903 None:intergenic 35.0%
AAGAAATAGAAGACATTGGG+AGG - Chr3:93837845-93837864 None:intergenic 35.0%
ACCAAAATTGTGATGATTGC+AGG - Chr3:93839048-93839067 None:intergenic 35.0%
ACCAACCTAGAGACAAAAAA+GGG + Chr3:93838333-93838352 MsG0380017233.01.T01:intron 35.0%
ACCAATTTAACTCCCAAAGA+AGG - Chr3:93838400-93838419 None:intergenic 35.0%
ACCACGAAGAAGCTAAATTT+GGG - Chr3:93838883-93838902 None:intergenic 35.0%
AGAAGACCTAAAAAATGGTC+AGG - Chr3:93838510-93838529 None:intergenic 35.0%
AGTGAAACTGAAATGAGAAC+TGG - Chr3:93837488-93837507 None:intergenic 35.0%
ATAGCTATGCTTTATCTTGC+TGG + Chr3:93840039-93840058 MsG0380017233.01.T01:intron 35.0%
CATTCCATGTCTATTCCAAA+GGG - Chr3:93838994-93839013 None:intergenic 35.0%
GCTTCTGCTATTAATAACAC+TGG + Chr3:93839632-93839651 MsG0380017233.01.T01:intron 35.0%
GGATATTCTCAAACACGAAA+TGG - Chr3:93838279-93838298 None:intergenic 35.0%
GGGGAACTCAAAAATTGTAT+TGG - Chr3:93837769-93837788 None:intergenic 35.0%
GTAGAACTAGTACAAACTTC+CGG - Chr3:93840471-93840490 None:intergenic 35.0%
GTAGGGAAATGGAATTACAA+AGG - Chr3:93840335-93840354 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG - Chr3:93837849-93837868 None:intergenic 35.0%
GTTGTTCTTAATGCACATGA+TGG + Chr3:93840387-93840406 MsG0380017233.01.T01:CDS 35.0%
TAAAAAATCCCCCTCATTTG+GGG - Chr3:93837789-93837808 None:intergenic 35.0%
TAATATTGGTCGGATGACTT+AGG + Chr3:93837520-93837539 MsG0380017233.01.T01:intron 35.0%
TACCAACCTAGAGACAAAAA+AGG + Chr3:93838332-93838351 MsG0380017233.01.T01:intron 35.0%
TAGCTATGCTTTATCTTGCT+GGG + Chr3:93840040-93840059 MsG0380017233.01.T01:intron 35.0%
TAGGACTTAGTTTCTTCCAT+GGG + Chr3:93838466-93838485 MsG0380017233.01.T01:intron 35.0%
TATGAAGTGAAGAGAGAAGA+TGG - Chr3:93839395-93839414 None:intergenic 35.0%
TATTACCACAGCATCAAAAG+TGG - Chr3:93839912-93839931 None:intergenic 35.0%
TCAAAAATTGTATTGGGGGA+GGG - Chr3:93837762-93837781 None:intergenic 35.0%
TCATTCCATGTCTATTCCAA+AGG - Chr3:93838995-93839014 None:intergenic 35.0%
TCATTTGACACCTTATCACT+AGG - Chr3:93840423-93840442 None:intergenic 35.0%
TCTTTCAGTCAAAACCTGTA+GGG - Chr3:93840352-93840371 None:intergenic 35.0%
TGAATAGAAGCGACCATATA+CGG - Chr3:93837441-93837460 None:intergenic 35.0%
TGTTCTTAATGCACATGATG+GGG + Chr3:93840389-93840408 MsG0380017233.01.T01:CDS 35.0%
TTAGGACTTAGTTTCTTCCA+TGG + Chr3:93838465-93838484 MsG0380017233.01.T01:intron 35.0%
TTGTAATTCCATTTCCCTAC+AGG + Chr3:93840335-93840354 MsG0380017233.01.T01:intron 35.0%
! AATTCCTCATTGACTGTAAG+TGG - Chr3:93838630-93838649 None:intergenic 35.0%
! GCTTTTATGATGTTAGGCTT+TGG + Chr3:93837011-93837030 MsG0380017233.01.T01:intron 35.0%
! TCCTGCAATCATCACAATTT+TGG + Chr3:93839044-93839063 MsG0380017233.01.T01:intron 35.0%
! TCCTTCTTTGGGAGTTAAAT+TGG + Chr3:93838396-93838415 MsG0380017233.01.T01:intron 35.0%
! TTCTCAAAGTGCTACAAAGA+TGG + Chr3:93837396-93837415 MsG0380017233.01.T01:intron 35.0%
! TTTTTGCATATCGGCGATAT+CGG + Chr3:93839164-93839183 MsG0380017233.01.T01:intron 35.0%
!! TTATCCCTTTGGAATAGACA+TGG + Chr3:93838987-93839006 MsG0380017233.01.T01:intron 35.0%
!!! GACCATTTTTTAGGTCTTCT+TGG + Chr3:93838510-93838529 MsG0380017233.01.T01:intron 35.0%
!!! GGGAGTTAAATTGGTTTTTG+CGG + Chr3:93838405-93838424 MsG0380017233.01.T01:intron 35.0%
AAAAAATCCCCCTCATTTGG+GGG - Chr3:93837788-93837807 None:intergenic 40.0%
AAAAGTCACCGCTATTGTAG+TGG - Chr3:93839148-93839167 None:intergenic 40.0%
AAGTGAGAGAGCTCTATGAT+AGG + Chr3:93838744-93838763 MsG0380017233.01.T01:intron 40.0%
ACATTCTGCAACTGTGAAGA+AGG + Chr3:93837997-93838016 MsG0380017233.01.T01:intron 40.0%
ACCTAGAGACAAAAAAGGGA+AGG + Chr3:93838337-93838356 MsG0380017233.01.T01:intron 40.0%
AGAACTGGCAGTCATTGTAT+AGG - Chr3:93837473-93837492 None:intergenic 40.0%
AGTCAAAACCTGTAGGGAAA+TGG - Chr3:93840346-93840365 None:intergenic 40.0%
CTCAAAAATTGTATTGGGGG+AGG - Chr3:93837763-93837782 None:intergenic 40.0%
CTCTTTCAGTCAAAACCTGT+AGG - Chr3:93840353-93840372 None:intergenic 40.0%
CTTAATTGGTGCACAGTCTA+CGG + Chr3:93837318-93837337 MsG0380017233.01.T01:intron 40.0%
GACAAGGTGAAACACAATGA+TGG - Chr3:93837219-93837238 None:intergenic 40.0%
GCCCAAGAAGACCTAAAAAA+TGG - Chr3:93838515-93838534 None:intergenic 40.0%
GGATGAAACTTCAATAGACG+TGG + Chr3:93837098-93837117 MsG0380017233.01.T01:intron 40.0%
TAATAGCAGAAGCCACAGAT+AGG - Chr3:93839625-93839644 None:intergenic 40.0%
TGACTGTAAGTGGCACAAAA+AGG - Chr3:93838620-93838639 None:intergenic 40.0%
TTAGTGATCAGAGATGACCT+AGG - Chr3:93839357-93839376 None:intergenic 40.0%
TTCACCTTGTCTAACCTGTT+AGG + Chr3:93837228-93837247 MsG0380017233.01.T01:intron 40.0%
TTCTTCAGAACCATCAAGCT+GGG + Chr3:93838116-93838135 MsG0380017233.01.T01:CDS 40.0%
TTGGGAGAGATTGAGAGTTA+TGG - Chr3:93838844-93838863 None:intergenic 40.0%
! ACCCAAATTTAGCTTCTTCG+TGG + Chr3:93838879-93838898 MsG0380017233.01.T01:intron 40.0%
! AGCGGTGACTTTTTGCATAT+CGG + Chr3:93839155-93839174 MsG0380017233.01.T01:intron 40.0%
! CTTATGATTTTGAGCAACCG+CGG + Chr3:93839091-93839110 MsG0380017233.01.T01:intron 40.0%
!! CTTCCATGGGTTTCTAGTTA+AGG + Chr3:93838479-93838498 MsG0380017233.01.T01:intron 40.0%
!! GGATGACTTAGGCTTTGTTT+GGG + Chr3:93837531-93837550 MsG0380017233.01.T01:intron 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - Chr3:93837914-93837933 None:intergenic 40.0%
!! TCCTCCTTCTGCGTTATTTT+GGG + Chr3:93838808-93838827 MsG0380017233.01.T01:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + Chr3:93837538-93837557 MsG0380017233.01.T01:intron 40.0%
!!! ACCTTCCCTTTTTTGTCTCT+AGG - Chr3:93838341-93838360 None:intergenic 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG - Chr3:93837877-93837896 None:intergenic 40.0%
!!! TCCCTTTTTTGTCTCTAGGT+TGG - Chr3:93838337-93838356 None:intergenic 40.0%
!!! TTTATTTTAGCTCACTGCCC+TGG - Chr3:93838701-93838720 None:intergenic 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG + Chr3:93837776-93837795 MsG0380017233.01.T01:intron 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + Chr3:93837775-93837794 MsG0380017233.01.T01:intron 40.0%
ACAACCTGATAAAGCGCAGT+GGG - Chr3:93839667-93839686 None:intergenic 45.0%
ACCACCTAACAGGTTAGACA+AGG - Chr3:93837235-93837254 None:intergenic 45.0%
ACCTTGTCTAACCTGTTAGG+TGG + Chr3:93837231-93837250 MsG0380017233.01.T01:intron 45.0%
AGTGAAGAGAGAAGATGGAG+AGG - Chr3:93839390-93839409 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG - Chr3:93837840-93837859 None:intergenic 45.0%
ATCAGAGATGACCTAGGTCA+TGG - Chr3:93839351-93839370 None:intergenic 45.0%
ATTTGACGCTTTCTCTTGCC+AGG + Chr3:93838680-93838699 MsG0380017233.01.T01:intron 45.0%
CCACTAAGTTGCTCAACTGA+GGG - Chr3:93837080-93837099 None:intergenic 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG - Chr3:93837868-93837887 None:intergenic 45.0%
GGAAACAACACCTGCTTATC+CGG + Chr3:93839856-93839875 MsG0380017233.01.T01:CDS 45.0%
GGCAGCATTTCCTAGTGATA+AGG + Chr3:93840410-93840429 MsG0380017233.01.T01:CDS 45.0%
GTGTAACTGTTGCAATCTGC+AGG + Chr3:93837169-93837188 MsG0380017233.01.T01:intron 45.0%
GTTCTTCAGAACCATCAAGC+TGG + Chr3:93838115-93838134 MsG0380017233.01.T01:CDS 45.0%
TAGAAGACATTGGGAGGAGA+GGG - Chr3:93837839-93837858 None:intergenic 45.0%
TCAGAGATGACCTAGGTCAT+GGG - Chr3:93839350-93839369 None:intergenic 45.0%
TCCACTAAGTTGCTCAACTG+AGG - Chr3:93837081-93837100 None:intergenic 45.0%
TTCCGCTACCACTACAATAG+CGG + Chr3:93839137-93839156 MsG0380017233.01.T01:intron 45.0%
TTTGACGCTTTCTCTTGCCA+GGG + Chr3:93838681-93838700 MsG0380017233.01.T01:intron 45.0%
! AAAACCTTTTGGCGAGGTGA+TGG + Chr3:93838371-93838390 MsG0380017233.01.T01:intron 45.0%
! AGGTGATGGTGTCCTTCTTT+GGG + Chr3:93838385-93838404 MsG0380017233.01.T01:intron 45.0%
! ATCACCTCGCCAAAAGGTTT+TGG - Chr3:93838372-93838391 None:intergenic 45.0%
! CTCCTCCTTCTGCGTTATTT+TGG + Chr3:93838807-93838826 MsG0380017233.01.T01:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + Chr3:93837543-93837562 MsG0380017233.01.T01:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - Chr3:93837562-93837543 None:intergenic 45.0%
! GGACTCTAAAAAGGCAAGTG+TGG + Chr3:93839729-93839748 MsG0380017233.01.T01:intron 45.0%
! TAACCCAAAACCTTTTGGCG+AGG + Chr3:93838365-93838384 MsG0380017233.01.T01:intron 45.0%
! TCACCTCGCCAAAAGGTTTT+GGG - Chr3:93838371-93838390 None:intergenic 45.0%
! TGTATTGGGGGAGGGTTTTT+GGG - Chr3:93837754-93837773 None:intergenic 45.0%
! TTGTATTGGGGGAGGGTTTT+TGG - Chr3:93837755-93837774 None:intergenic 45.0%
! TTTGAGTTCCCCCAAATGAG+GGG + Chr3:93837777-93837796 MsG0380017233.01.T01:intron 45.0%
!! CGGATGACTTAGGCTTTGTT+TGG + Chr3:93837530-93837549 MsG0380017233.01.T01:intron 45.0%
!! CTTCAATAGACGTGGATTGG+AGG + Chr3:93837106-93837125 MsG0380017233.01.T01:intron 45.0%
!! GCTGAGTTGGTGATGAGATA+GGG + Chr3:93839305-93839324 MsG0380017233.01.T01:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + Chr3:93837542-93837561 MsG0380017233.01.T01:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - Chr3:93837561-93837542 None:intergenic 45.0%
!! TGACTCCACTTTTGATGCTG+TGG + Chr3:93839904-93839923 MsG0380017233.01.T01:CDS 45.0%
!! TGCTGAGTTGGTGATGAGAT+AGG + Chr3:93839304-93839323 MsG0380017233.01.T01:intron 45.0%
!! TGTGCCACTTACAGTCAATG+AGG + Chr3:93838623-93838642 MsG0380017233.01.T01:intron 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG - Chr3:93837881-93837900 None:intergenic 45.0%
!!! TTAATATACTTTTAATTTTA+AGG + Chr3:93837674-93837693 MsG0380017233.01.T01:intron 5.0%
ACCTAGGTCATGGGGTTTAG+GGG - Chr3:93839341-93839360 None:intergenic 50.0%
ACTAGTACAAACTTCCGGCG+AGG - Chr3:93840466-93840485 None:intergenic 50.0%
ATGTATCCCTCCCAGCTTGA+TGG - Chr3:93838129-93838148 None:intergenic 50.0%
CACAACCTGATAAAGCGCAG+TGG - Chr3:93839668-93839687 None:intergenic 50.0%
CACCGCTATTGTAGTGGTAG+CGG - Chr3:93839142-93839161 None:intergenic 50.0%
CACTGTTCAAACCACTGCTG+TGG + Chr3:93838429-93838448 MsG0380017233.01.T01:intron 50.0%
CAGAGATGACCTAGGTCATG+GGG - Chr3:93839349-93839368 None:intergenic 50.0%
CCCTCAGTTGAGCAACTTAG+TGG + Chr3:93837077-93837096 MsG0380017233.01.T01:intron 50.0%
GACCTAGGTCATGGGGTTTA+GGG - Chr3:93839342-93839361 None:intergenic 50.0%
GCAGCCCAAAATAACGCAGA+AGG - Chr3:93838815-93838834 None:intergenic 50.0%
GCCCAAAATAACGCAGAAGG+AGG - Chr3:93838812-93838831 None:intergenic 50.0%
GCGGAATAGCAATAGCGTAC+CGG - Chr3:93839123-93839142 None:intergenic 50.0%
TACTAGTGATGACTCCTCGC+CGG + Chr3:93840449-93840468 MsG0380017233.01.T01:CDS 50.0%
TCAGAACCATCAAGCTGGGA+GGG + Chr3:93838120-93838139 MsG0380017233.01.T01:CDS 50.0%
TGACCTAGGTCATGGGGTTT+AGG - Chr3:93839343-93839362 None:intergenic 50.0%
TTCAGAACCATCAAGCTGGG+AGG + Chr3:93838119-93838138 MsG0380017233.01.T01:CDS 50.0%
TTGAGTTCCCCCAAATGAGG+GGG + Chr3:93837778-93837797 MsG0380017233.01.T01:intron 50.0%
TTGCTGTGGAACCACCTAAC+AGG - Chr3:93837245-93837264 None:intergenic 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG + Chr3:93837548-93837567 MsG0380017233.01.T01:intron 50.0%
! GAGGTGATGGTGTCCTTCTT+TGG + Chr3:93838384-93838403 MsG0380017233.01.T01:intron 50.0%
! GTATTGGGGGAGGGTTTTTG+GGG - Chr3:93837753-93837772 None:intergenic 50.0%
!! AGGGTTTTTGGGGGTTATGG+AGG - Chr3:93837743-93837762 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + Chr3:93837541-93837560 MsG0380017233.01.T01:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - Chr3:93837560-93837541 None:intergenic 50.0%
!! GGGTTTTTGGGGGTTATGGA+GGG - Chr3:93837742-93837761 None:intergenic 50.0%
!! TATTGGGGGAGGGTTTTTGG+GGG - Chr3:93837752-93837771 None:intergenic 50.0%
!!! CTGCGTTATTTTGGGCTGCA+TGG + Chr3:93838816-93838835 MsG0380017233.01.T01:intron 50.0%
ACATTGGGAGGAGAGGGCTT+TGG - Chr3:93837833-93837852 None:intergenic 55.0%
ACCCCTAAACCCCATGACCT+AGG + Chr3:93839337-93839356 MsG0380017233.01.T01:intron 55.0%
AGAAGATGGAGAGGCAGAGG+CGG - Chr3:93839381-93839400 None:intergenic 55.0%
ATGGCCCACTGCGCTTTATC+AGG + Chr3:93839660-93839679 MsG0380017233.01.T01:intron 55.0%
GACACCATCACCTCGCCAAA+AGG - Chr3:93838378-93838397 None:intergenic 55.0%
GAGAGAAGATGGAGAGGCAG+AGG - Chr3:93839384-93839403 None:intergenic 55.0%
GTTCAAACCACTGCTGTGGC+AGG + Chr3:93838433-93838452 MsG0380017233.01.T01:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG + Chr3:93837547-93837566 MsG0380017233.01.T01:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - Chr3:93837566-93837547 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - Chr3:93837565-93837546 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - Chr3:93837904-93837923 None:intergenic 55.0%
!! GGGAGGGTTTTTGGGGGTTA+TGG - Chr3:93837746-93837765 None:intergenic 55.0%
GAGTTTGGAGGGGAAGGGAG+GGG + Chr3:93837553-93837572 MsG0380017233.01.T01:intron 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG + Chr3:93837552-93837571 MsG0380017233.01.T01:intron 60.0%
TGAGCAACCGCGGTGAAAGC+CGG + Chr3:93839101-93839120 MsG0380017233.01.T01:intron 60.0%
TGTGGCAGGCAGCAGGCTTT+AGG + Chr3:93838447-93838466 MsG0380017233.01.T01:intron 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG - Chr3:93837830-93837849 None:intergenic 60.0%
!! TAGCGTACCGGCTTTCACCG+CGG - Chr3:93839111-93839130 None:intergenic 60.0%
GAAGGGAGGGGAGGGCTTTG+GGG + Chr3:93837565-93837584 MsG0380017233.01.T01:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG - Chr3:93837899-93837918 None:intergenic 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG + Chr3:93837564-93837583 MsG0380017233.01.T01:intron 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG - Chr3:93837900-93837919 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG + Chr3:93837551-93837570 MsG0380017233.01.T01:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG + Chr3:93837557-93837576 MsG0380017233.01.T01:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG + Chr3:93837556-93837575 MsG0380017233.01.T01:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG + Chr3:93837566-93837585 MsG0380017233.01.T01:intron 65.0%
CCACTGCTGTGGCAGGCAGC+AGG + Chr3:93838440-93838459 MsG0380017233.01.T01:intron 70.0%
CCTGCTGCCTGCCACAGCAG+TGG - Chr3:93838443-93838462 None:intergenic 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG + Chr3:93837563-93837582 MsG0380017233.01.T01:intron 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG - Chr3:93837901-93837920 None:intergenic 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG - Chr3:93837895-93837914 None:intergenic 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG - Chr3:93837896-93837915 None:intergenic 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG - Chr3:93837889-93837908 None:intergenic 70.0%
!! AGGGAGGGGAGGGCTTTGGG+GGG + Chr3:93837567-93837586 MsG0380017233.01.T01:intron 70.0%
!! AGGGGAGGGCTTTGGGGGGT+TGG + Chr3:93837571-93837590 MsG0380017233.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 93836887 93840515 93836887 ID=MsG0380017233.01;Name=MsG0380017233.01
Chr3 mRNA 93836887 93840515 93836887 ID=MsG0380017233.01.T01;Parent=MsG0380017233.01;Name=MsG0380017233.01.T01;_AED=0.47;_eAED=0.53;_QI=0|0.25|0.2|1|0.5|0.6|5|0|142
Chr3 exon 93836887 93836922 93836887 ID=MsG0380017233.01.T01:exon:1446;Parent=MsG0380017233.01.T01
Chr3 exon 93838082 93838174 93838082 ID=MsG0380017233.01.T01:exon:1447;Parent=MsG0380017233.01.T01
Chr3 exon 93839682 93839747 93839682 ID=MsG0380017233.01.T01:exon:1448;Parent=MsG0380017233.01.T01
Chr3 exon 93839851 93839925 93839851 ID=MsG0380017233.01.T01:exon:1449;Parent=MsG0380017233.01.T01
Chr3 exon 93840357 93840515 93840357 ID=MsG0380017233.01.T01:exon:1450;Parent=MsG0380017233.01.T01
Chr3 CDS 93836887 93836922 93836887 ID=MsG0380017233.01.T01:cds;Parent=MsG0380017233.01.T01
Chr3 CDS 93838082 93838174 93838082 ID=MsG0380017233.01.T01:cds;Parent=MsG0380017233.01.T01
Chr3 CDS 93839682 93839747 93839682 ID=MsG0380017233.01.T01:cds;Parent=MsG0380017233.01.T01
Chr3 CDS 93839851 93839925 93839851 ID=MsG0380017233.01.T01:cds;Parent=MsG0380017233.01.T01
Chr3 CDS 93840357 93840515 93840357 ID=MsG0380017233.01.T01:cds;Parent=MsG0380017233.01.T01
Gene Sequence

>MsG0380017233.01.T01

ATGAGTTGGATTGTGATAAGTATTGATGGCATTAAGTTTGATTCAAATATATCTTTCTCTAGTCAACAGGTTCTTCAGAACCATCAAGCTGGGAGGGATACATCTTTATCCCCTATATATAAGGTAAATGTTGTGAAGACTGTTTATGCATCTCCAAGTCGTGTCAATTTTCAATTGGACTCTAAAAAGGCAAGTGAAGTGGAAACAACACCTGCTTATCCGGATATATGTTTTGCAATTGATGATTTTGACTCCACTTTTGATGCTGTGGTTTTGACTGAAAGAGATCATTGCTATTGTGTTGTTCTTAATGCACATGATGGGGCAGCATTTCCTAGTGATAAGGTGTCAAATGATTGCAGTACTAGTGATGACTCCTCGCCGGAAGTTTGTACTAGTTCTACTACAAAAAAAGATACTAAGGTTTGA

Protein sequence

>MsG0380017233.01.T01

MSWIVISIDGIKFDSNISFSSQQVLQNHQAGRDTSLSPIYKVNVVKTVYASPSRVNFQLDSKKASEVETTPAYPDICFAIDDFDSTFDAVVLTERDHCYCVVLNAHDGAAFPSDKVSNDCSTSDDSSPEVCTSSTTKKDTKV*