AlfalfaGEDB | MsG0780041126.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041126.01

KEGG: K22072
GO: GO:0005198 GO:0051536 GO:0097428
PFAM: PF01521

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041126.01.T01	XP_003625821.1	64.935	154	5	1	2	155	56	160	6.52E-56	182

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041126.01.T01	Q8LCY2	50.327	153	25	2	2	154	56	157	4.83E-41	137

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041126.01.T01	G7KQU7	64.935	154	5	1	2	155	56	160	3.12e-56	182

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049129.01	MsG0780041126.01	0.801915	7.186990e-49	3.473958e-46
MsG0180003352.01	MsG0780041126.01	0.811076	8.387440e-51	5.142596e-48
MsG0280006319.01	MsG0780041126.01	0.850029	2.211234e-60	4.273945e-57
MsG0280009863.01	MsG0780041126.01	0.849567	2.977160e-60	5.666961e-57
MsG0280010198.01	MsG0780041126.01	0.829282	5.617132e-55	5.723803e-52
MsG0280010254.01	MsG0780041126.01	0.809428	1.901736e-50	1.116284e-47
MsG0380014646.01	MsG0780041126.01	0.828299	9.710281e-55	9.612274e-52
MsG0380016936.01	MsG0780041126.01	0.826835	2.181493e-54	2.069139e-51
MsG0580024567.01	MsG0780041126.01	0.826729	2.312635e-54	2.186817e-51
MsG0580024763.01	MsG0780041126.01	0.800278	1.553754e-48	7.205420e-46

Showing 1 to 10 of 17 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041126.01.T01	MTR_7g104600	64.935	154	5	1	2	155	56	160	7.90e-60	182

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041126.01.T01	AT5G03905	50.327	153	25	2	2	154	56	157	4.92e-42	137
MsG0780041126.01.T01	AT5G03905	63.265	49	16	1	2	50	56	102	7.75e-14	64.3

Showing 1 to 2 of 2 entries

Previous1Next

Find 65 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGGTGAAGATGTGGCA+TGG	0.649445	7:+86898480	None:intergenic
AAGCCCACTCTTTACAAGAA+TGG	0.416611	7:-86897321	MsG0780041126.01.T01:CDS
AATAAACATTTGAGCGGTGG+AGG	0.528089	7:+86895809	None:intergenic
AATCACACCATTGATGTCTC+AGG	0.504098	7:+86898627	None:intergenic
ACAGAGTCAACTCAGATGAT+AGG	0.477854	7:-86897996	MsG0780041126.01.T01:intron
ACGGAGAACCCAAGTGCAGT+TGG	0.605079	7:-86895903	MsG0780041126.01.T01:CDS
AGAAGATCCTGAGACATCAA+TGG	0.572109	7:-86898634	MsG0780041126.01.T01:five_prime_UTR
AGATGTGGCATGGTGAAGAA+TGG	0.513237	7:+86898490	None:intergenic
AGCCCACTCTTTACAAGAAT+GGG	0.398005	7:-86897320	MsG0780041126.01.T01:intron
AGCGGTGGAGGAAAGTGAGG+AGG	0.553032	7:+86895821	None:intergenic

Showing 1 to 10 of 65 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAAATGTATAAGGCA+TGG	+	Chr7:86897405-86897424	None:intergenic	30.0%
AAGAATGGGTATGTTATGTT+AGG	-	Chr7:86896988-86897007	MsG0780041126.01.T01:intron	30.0%
AGTCAGATTTCAATGTTGAT+AGG	-	Chr7:86896336-86896355	MsG0780041126.01.T01:intron	30.0%
ATTGGAATCCAAAATCAACA+AGG	-	Chr7:86897100-86897119	MsG0780041126.01.T01:intron	30.0%
ATTTCATACGACTTTGTGAA+AGG	-	Chr7:86896466-86896485	MsG0780041126.01.T01:intron	30.0%
CAAATTACAAAACTGACATG+TGG	+	Chr7:86897702-86897721	None:intergenic	30.0%
GAAAACTTCAAACATTGAAC+AGG	+	Chr7:86897289-86897308	None:intergenic	30.0%
GCTATTTAGTTAGAGTAACA+TGG	+	Chr7:86897867-86897886	None:intergenic	30.0%
GTAACATACAGTTGTTGTAA+TGG	-	Chr7:86898611-86898630	MsG0780041126.01.T01:five_prime_UTR	30.0%
TACTCTAACTAAATAGCCTA+AGG	-	Chr7:86897870-86897889	MsG0780041126.01.T01:CDS	30.0%

Showing 1 to 10 of 190 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	86895645	86898671	86895645	ID=MsG0780041126.01;Name=MsG0780041126.01
Chr7	mRNA	86895645	86898671	86895645	ID=MsG0780041126.01.T01;Parent=MsG0780041126.01;Name=MsG0780041126.01.T01;_AED=0.50;_eAED=0.55;_QI=529\|0.25\|0.4\|1\|0.25\|0.2\|5\|218\|155
Chr7	exon	86895645	86895928	86895645	ID=MsG0780041126.01.T01:exon:19828;Parent=MsG0780041126.01.T01
Chr7	exon	86897153	86897216	86897153	ID=MsG0780041126.01.T01:exon:19827;Parent=MsG0780041126.01.T01
Chr7	exon	86897321	86897386	86897321	ID=MsG0780041126.01.T01:exon:19826;Parent=MsG0780041126.01.T01
Chr7	exon	86897765	86897890	86897765	ID=MsG0780041126.01.T01:exon:19825;Parent=MsG0780041126.01.T01
Chr7	exon	86897997	86898671	86897997	ID=MsG0780041126.01.T01:exon:19824;Parent=MsG0780041126.01.T01
Chr7	five_prime_UTR	86898143	86898671	86898143	ID=MsG0780041126.01.T01:five_prime_utr;Parent=MsG0780041126.01.T01
Chr7	CDS	86897997	86898142	86897997	ID=MsG0780041126.01.T01:cds;Parent=MsG0780041126.01.T01
Chr7	CDS	86897765	86897890	86897765	ID=MsG0780041126.01.T01:cds;Parent=MsG0780041126.01.T01
Chr7	CDS	86897321	86897386	86897321	ID=MsG0780041126.01.T01:cds;Parent=MsG0780041126.01.T01
Chr7	CDS	86897153	86897216	86897153	ID=MsG0780041126.01.T01:cds;Parent=MsG0780041126.01.T01
Chr7	CDS	86895863	86895928	86895863	ID=MsG0780041126.01.T01:cds;Parent=MsG0780041126.01.T01
Chr7	three_prime_UTR	86895645	86895862	86895645	ID=MsG0780041126.01.T01:three_prime_utr;Parent=MsG0780041126.01.T01

Gene Sequence

>MsG0780041126.01.T01

ATGAATGTGGAACAGAAAATGAAGGAATTGGATGCCAGTGAATCATCATCCGGTGGAAAAATGCTTCGTTTAAGCGTAGAAACCGGTGGATGTTCAGGATTTCAGTATGCTTTTAATTTGGATGACAGAGTCAACTCAGATGATAGAGTTTTTGAGAAGGAAGGAATTAAACTGGTTGTTGACAATATTTCATACGACTTTGTGAAAGGCGCAACTGTTGATTATGTCGAGGAGCTAATCCGTTCGGCTTTCATAGTAAGTCAAGCGCACTTAAAGCATGAGTTAGACTATGTGTGTGCAAAGTTGACATGCTTCAAGCCCACTCTTTACAAGAATGGATTGGAATCCAAAATCAACAAGGCCCTGTTCAAGAAATTTTTTTCAAAAAAAAAAACAGAGTGGGTGACGGAGAACCCAAGTGCAGTTGGTGGTTGCAGTTGTAAAAGTTCCTTCATGGTGAAACAGTAG

Protein sequence

>MsG0780041126.01.T01

MNVEQKMKELDASESSSGGKMLRLSVETGGCSGFQYAFNLDDRVNSDDRVFEKEGIKLVVDNISYDFVKGATVDYVEELIRSAFIVSQAHLKHELDYVCAKLTCFKPTLYKNGLESKINKALFKKFFSKKKTEWVTENPSAVGGCSCKSSFMVKQ*