AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041126.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041126.01.T01 MTR_7g104600 64.935 154 5 1 2 155 56 160 7.90e-60 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041126.01.T01 AT5G03905 50.327 153 25 2 2 154 56 157 4.92e-42 137
MsG0780041126.01.T01 AT5G03905 63.265 49 16 1 2 50 56 102 7.75e-14 64.3

Find 65 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAAATACATTTCAAAATT+TGG 0.089793 7:-86898352 MsG0780041126.01.T01:five_prime_UTR
GAACAGGGCCTTGTTGATTT+TGG 0.199378 7:+86897186 None:intergenic
TCTCTCAATTGCTTGTTAAT+TGG 0.208186 7:-86898400 MsG0780041126.01.T01:five_prime_UTR
ATCAATTACATTACATATAA+TGG 0.280558 7:+86898165 None:intergenic
TGTAATGGTAATAAATTATC+AGG 0.291250 7:-86895668 MsG0780041126.01.T01:three_prime_UTR
TACATTTCAAAATTTGGATT+AGG 0.335989 7:-86898346 MsG0780041126.01.T01:five_prime_UTR
CAGTTGTAAAAGTTCCTTCA+TGG 0.367289 7:-86895874 MsG0780041126.01.T01:CDS
TGAGAAGGAAGGAATTAAAC+TGG 0.374459 7:-86897862 MsG0780041126.01.T01:CDS
GTAGAAACCGGTGGATGTTC+AGG 0.378607 7:-86898045 MsG0780041126.01.T01:CDS
CTGCAACCACCAACTGCACT+TGG 0.390122 7:+86895894 None:intergenic
AGCCCACTCTTTACAAGAAT+GGG 0.398005 7:-86897320 MsG0780041126.01.T01:intron
GGAACAGAAAATGAAGGAAT+TGG 0.403267 7:-86898112 MsG0780041126.01.T01:CDS
AAGCCCACTCTTTACAAGAA+TGG 0.416611 7:-86897321 MsG0780041126.01.T01:CDS
TGTTGTACTGTACCCGGGTT+AGG 0.423510 7:-86898199 MsG0780041126.01.T01:five_prime_UTR
GTTATGACAGTTATGCAGAT+AGG 0.437024 7:-86898260 MsG0780041126.01.T01:five_prime_UTR
GCGGTGGAGGAAAGTGAGGA+GGG 0.446347 7:+86895822 None:intergenic
GAAACAGTAGTTAGCTATCT+TGG 0.449743 7:-86895850 MsG0780041126.01.T01:exon
GCACCAAAAGATAATAGAAC+AGG 0.462067 7:+86895632 None:intergenic
CTTCGTTTAAGCGTAGAAAC+CGG 0.462646 7:-86898057 MsG0780041126.01.T01:CDS
ATGTGGACAGGTTCCACGTC+GGG 0.463532 7:+86898455 None:intergenic
ATTAAGTTGTACAAACAAGT+TGG 0.466120 7:+86898141 None:intergenic
ACAGAGTCAACTCAGATGAT+AGG 0.477854 7:-86897996 MsG0780041126.01.T01:intron
GTAACATACAGTTGTTGTAA+TGG 0.499420 7:-86895683 MsG0780041126.01.T01:three_prime_UTR
TATGAGAAGCATATGCGATA+AGG 0.499806 7:+86898309 None:intergenic
AATCACACCATTGATGTCTC+AGG 0.504098 7:+86898627 None:intergenic
TCCACCGGATGATGATTCAC+TGG 0.509565 7:+86898086 None:intergenic
AGATGTGGCATGGTGAAGAA+TGG 0.513237 7:+86898490 None:intergenic
TGTCGAGGAGCTAATCCGTT+CGG 0.527854 7:-86897790 MsG0780041126.01.T01:CDS
AATAAACATTTGAGCGGTGG+AGG 0.528089 7:+86895809 None:intergenic
GGTTCCACGTCGGGAGAAGA+AGG 0.530859 7:+86898464 None:intergenic
TCGAAGACTCGCTCCATCGT+TGG 0.532351 7:-86898576 MsG0780041126.01.T01:five_prime_UTR
TTTGTACAACTTAATGAATG+TGG 0.535168 7:-86898133 MsG0780041126.01.T01:exon
ATTTCATACGACTTTGTGAA+AGG 0.535942 7:-86897828 MsG0780041126.01.T01:CDS
TTCACCTTCTTCTCCCGACG+TGG 0.537237 7:-86898468 MsG0780041126.01.T01:five_prime_UTR
AGTTCATGTTGTACTGTACC+CGG 0.537635 7:-86898205 MsG0780041126.01.T01:five_prime_UTR
TTATGACAGTTATGCAGATA+GGG 0.545803 7:-86898259 MsG0780041126.01.T01:five_prime_UTR
TACCCATTCTTGTAAAGAGT+GGG 0.547698 7:+86897318 None:intergenic
AGCGGTGGAGGAAAGTGAGG+AGG 0.553032 7:+86895821 None:intergenic
GATGCCAGTGAATCATCATC+CGG 0.561795 7:-86898090 MsG0780041126.01.T01:CDS
TGAAATCGTGCTGCCAACGA+TGG 0.563513 7:+86898563 None:intergenic
TAACTACTGTTTCACCATGA+AGG 0.567622 7:+86895860 None:intergenic
CGTTGGCAGCACGATTTCAA+CGG 0.568585 7:-86898559 MsG0780041126.01.T01:five_prime_UTR
GAATGTGGAACAGAAAATGA+AGG 0.569964 7:-86898118 MsG0780041126.01.T01:CDS
AGAAGATCCTGAGACATCAA+TGG 0.572109 7:-86898634 MsG0780041126.01.T01:five_prime_UTR
CATAGTATAATCTAGTTCGA+CGG 0.575888 7:+86895786 None:intergenic
TGCAACCACCAACTGCACTT+GGG 0.581343 7:+86895895 None:intergenic
CGGAATAAACATTTGAGCGG+TGG 0.596422 7:+86895806 None:intergenic
CTGAAATCCTGAACATCCAC+CGG 0.596753 7:+86898038 None:intergenic
CGGTGGAGGAAAGTGAGGAG+GGG 0.602223 7:+86895823 None:intergenic
ACGGAGAACCCAAGTGCAGT+TGG 0.605079 7:-86895903 MsG0780041126.01.T01:CDS
ATACCCATTCTTGTAAAGAG+TGG 0.606700 7:+86897317 None:intergenic
GGTACGCATAGTTCCTAACC+CGG 0.608415 7:+86898186 None:intergenic
GAGAACCCAAGTGCAGTTGG+TGG 0.609330 7:-86895900 MsG0780041126.01.T01:CDS
CGCAACTGTTGATTATGTCG+AGG 0.618120 7:-86897805 MsG0780041126.01.T01:CDS
TTGAGCGGTGGAGGAAAGTG+AGG 0.625815 7:+86895818 None:intergenic
GTTCATGTTGTACTGTACCC+GGG 0.631174 7:-86898204 MsG0780041126.01.T01:five_prime_UTR
GACTTACTATGAAAGCCGAA+CGG 0.642245 7:+86897775 None:intergenic
CGTTTAAGCGTAGAAACCGG+TGG 0.643374 7:-86898054 MsG0780041126.01.T01:CDS
GGGAGAAGAAGGTGAAGATG+TGG 0.644162 7:+86898475 None:intergenic
AAGAAGGTGAAGATGTGGCA+TGG 0.649445 7:+86898480 None:intergenic
GCCAGTGAATCATCATCCGG+TGG 0.654118 7:-86898087 MsG0780041126.01.T01:CDS
CGACGGAATAAACATTTGAG+CGG 0.683940 7:+86895803 None:intergenic
TATGTGGACAGGTTCCACGT+CGG 0.705696 7:+86898454 None:intergenic
GTACGCATAGTTCCTAACCC+GGG 0.720509 7:+86898187 None:intergenic
ATTGGAATCCAAAATCAACA+AGG 0.739570 7:-86897194 MsG0780041126.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCATACTAAAATTATAAAA+AGG + Chr7:86896650-86896669 None:intergenic 15.0%
!! AGTAAATACATTTCAAAATT+TGG - Chr7:86895942-86895961 MsG0780041126.01.T01:intron 15.0%
!! ATCAATTACATTACATATAA+TGG + Chr7:86896132-86896151 None:intergenic 15.0%
!! TTATAATTTATAAAAGACAC+TGG + Chr7:86896381-86896400 None:intergenic 15.0%
!!! ACCTTTTTATAATTTTAGTA+TGG - Chr7:86896646-86896665 MsG0780041126.01.T01:intron 15.0%
!!! TTTCAATACCTTTTAATTTT+GGG + Chr7:86897931-86897950 None:intergenic 15.0%
!!! TTTTCAATACCTTTTAATTT+TGG + Chr7:86897932-86897951 None:intergenic 15.0%
!! AAAATAAATGTAAGTTTGTC+TGG + Chr7:86898352-86898371 None:intergenic 20.0%
!! ATACTTAATAACAAAAGCAA+AGG + Chr7:86897987-86898006 None:intergenic 20.0%
!! ATATGAAACCAAAATGTATA+AGG + Chr7:86897410-86897429 None:intergenic 20.0%
!! TAAAACTTAACAACATATTC+AGG - Chr7:86897242-86897261 MsG0780041126.01.T01:intron 20.0%
!! TACATTTCAAAATTTGGATT+AGG - Chr7:86895948-86895967 MsG0780041126.01.T01:intron 20.0%
!! TACTTAATAACAAAAGCAAA+GGG + Chr7:86897986-86898005 None:intergenic 20.0%
!! TGAAAAAAATTTCTTGAACA+GGG + Chr7:86897126-86897145 None:intergenic 20.0%
!! TGTAATGGTAATAAATTATC+AGG - Chr7:86898626-86898645 MsG0780041126.01.T01:five_prime_UTR 20.0%
!! TTCAAAAAAAAAAACAGAGT+GGG - Chr7:86897142-86897161 MsG0780041126.01.T01:intron 20.0%
!! TTCATCCTCAAAAATTTATA+CGG + Chr7:86897311-86897330 None:intergenic 20.0%
!! TTGAAAAAAATTTCTTGAAC+AGG + Chr7:86897127-86897146 None:intergenic 20.0%
!! TTGTAAAATGTATATACTCA+TGG + Chr7:86897194-86897213 None:intergenic 20.0%
!! TTTATAAGTTATGACATTGA+AGG - Chr7:86898314-86898333 MsG0780041126.01.T01:five_prime_UTR 20.0%
!! TTTCAAAAAAAAAAACAGAG+TGG - Chr7:86897141-86897160 MsG0780041126.01.T01:intron 20.0%
!!! AATCAATCAATTGTTTTTTG+AGG + Chr7:86898550-86898569 None:intergenic 20.0%
!!! ACAAACTTACATTTATTTTC+TGG - Chr7:86898353-86898372 MsG0780041126.01.T01:five_prime_UTR 20.0%
!!! ATCATTTTCGTAATATAAGA+AGG - Chr7:86898121-86898140 MsG0780041126.01.T01:CDS 20.0%
!!! ATTTCAGTATGCTTTTAATT+TGG - Chr7:86896272-86896291 MsG0780041126.01.T01:intron 20.0%
!!! TTATTTTGGTTTGAACTTAA+TGG + Chr7:86897569-86897588 None:intergenic 20.0%
! AAAAAGAGCTTATAAGATTC+TGG + Chr7:86895763-86895782 None:intergenic 25.0%
! AAAACTTCAAACATTGAACA+GGG + Chr7:86897288-86897307 None:intergenic 25.0%
! AAATTACAAAACTGACATGT+GGG + Chr7:86897701-86897720 None:intergenic 25.0%
! AAATTGTTAATGTACACTCA+TGG + Chr7:86897026-86897045 None:intergenic 25.0%
! AGGTTCAGATTCAAAATATA+AGG - Chr7:86897262-86897281 MsG0780041126.01.T01:intron 25.0%
! CATTCTTTAATCAAAGTTCA+TGG + Chr7:86897803-86897822 None:intergenic 25.0%
! CTATTTAGTTAGAGTAACAT+GGG + Chr7:86897866-86897885 None:intergenic 25.0%
! TAAATTATGTAGAGCAACAT+AGG - Chr7:86897751-86897770 MsG0780041126.01.T01:intron 25.0%
! TATGTTGCTCTACATAATTT+AGG + Chr7:86897752-86897771 None:intergenic 25.0%
! TTAATCTCACATAAATAGAG+CGG + Chr7:86897896-86897915 None:intergenic 25.0%
! TTTGTACAACTTAATGAATG+TGG - Chr7:86896161-86896180 MsG0780041126.01.T01:intron 25.0%
!! AGTTTTCACCCAAAATTAAA+AGG - Chr7:86897920-86897939 MsG0780041126.01.T01:intron 25.0%
!! ATTAAGTTGTACAAACAAGT+TGG + Chr7:86896156-86896175 None:intergenic 25.0%
!! GTTTTCCGTATAAATTTTTG+AGG - Chr7:86897303-86897322 MsG0780041126.01.T01:intron 25.0%
!!! AAAAACCTAAAAGCATCTAA+AGG + Chr7:86897380-86897399 None:intergenic 25.0%
!!! ATTTTAGTATGGTACTAATC+AGG - Chr7:86896657-86896676 MsG0780041126.01.T01:intron 25.0%
!!! TATTTTCTGGTTTCATTTTC+AGG - Chr7:86898366-86898385 MsG0780041126.01.T01:five_prime_UTR 25.0%
AAACCAAAATGTATAAGGCA+TGG + Chr7:86897405-86897424 None:intergenic 30.0%
AAGAATGGGTATGTTATGTT+AGG - Chr7:86896988-86897007 MsG0780041126.01.T01:intron 30.0%
AGTCAGATTTCAATGTTGAT+AGG - Chr7:86896336-86896355 MsG0780041126.01.T01:intron 30.0%
ATTGGAATCCAAAATCAACA+AGG - Chr7:86897100-86897119 MsG0780041126.01.T01:intron 30.0%
ATTTCATACGACTTTGTGAA+AGG - Chr7:86896466-86896485 MsG0780041126.01.T01:intron 30.0%
CAAATTACAAAACTGACATG+TGG + Chr7:86897702-86897721 None:intergenic 30.0%
GAAAACTTCAAACATTGAAC+AGG + Chr7:86897289-86897308 None:intergenic 30.0%
GCTATTTAGTTAGAGTAACA+TGG + Chr7:86897867-86897886 None:intergenic 30.0%
GTAACATACAGTTGTTGTAA+TGG - Chr7:86898611-86898630 MsG0780041126.01.T01:five_prime_UTR 30.0%
TACTCTAACTAAATAGCCTA+AGG - Chr7:86897870-86897889 MsG0780041126.01.T01:CDS 30.0%
TTATGACAGTTATGCAGATA+GGG - Chr7:86896035-86896054 MsG0780041126.01.T01:intron 30.0%
TTCCAATCTGAACTTGAATA+TGG + Chr7:86897087-86897106 None:intergenic 30.0%
! AACCATATTCAAGTTCAGAT+TGG - Chr7:86897082-86897101 MsG0780041126.01.T01:intron 30.0%
! CAATGATGTTTTGTGTTTGA+TGG - Chr7:86898097-86898116 MsG0780041126.01.T01:CDS 30.0%
! CATAGTATAATCTAGTTCGA+CGG + Chr7:86898511-86898530 None:intergenic 30.0%
! GAAGCACTTTATTCTAATGT+TGG + Chr7:86897625-86897644 None:intergenic 30.0%
! TCTCTCAATTGCTTGTTAAT+TGG - Chr7:86895894-86895913 MsG0780041126.01.T01:CDS 30.0%
! TTACCATGCCTTATACATTT+TGG - Chr7:86897399-86897418 MsG0780041126.01.T01:intron 30.0%
!! ATGTGTCATTTCTTGTTAAG+TGG - Chr7:86897465-86897484 MsG0780041126.01.T01:intron 30.0%
!! TAATGTTGGTTACATTTTCC+AGG + Chr7:86897611-86897630 None:intergenic 30.0%
AAGTCACCTCTATATACAAC+AGG + Chr7:86897334-86897353 None:intergenic 35.0%
AAGTGCTTCTTGCAAAATTG+TGG - Chr7:86897636-86897655 MsG0780041126.01.T01:intron 35.0%
AAGTGTGCCAAAAACCTAAA+CGG + Chr7:86897546-86897565 None:intergenic 35.0%
ACATTCCATTCCAATACCAT+TGG + Chr7:86898252-86898271 None:intergenic 35.0%
ACTGTGATATCCAATGGTAT+TGG - Chr7:86898239-86898258 MsG0780041126.01.T01:five_prime_UTR 35.0%
ATACCCATTCTTGTAAAGAG+TGG + Chr7:86896980-86896999 None:intergenic 35.0%
ATCAGGTAACGAAGTTTCTT+AGG - Chr7:86896674-86896693 MsG0780041126.01.T01:intron 35.0%
CAGTTGTAAAAGTTCCTTCA+TGG - Chr7:86898420-86898439 MsG0780041126.01.T01:five_prime_UTR 35.0%
CATAGGTACTTCTGATCTTA+AGG - Chr7:86897768-86897787 MsG0780041126.01.T01:CDS 35.0%
GAAACAGTAGTTAGCTATCT+TGG - Chr7:86898444-86898463 MsG0780041126.01.T01:five_prime_UTR 35.0%
GAATGTGGAACAGAAAATGA+AGG - Chr7:86896176-86896195 MsG0780041126.01.T01:intron 35.0%
GATGAACCTGTTGTATATAG+AGG - Chr7:86897325-86897344 MsG0780041126.01.T01:CDS 35.0%
GGAACAGAAAATGAAGGAAT+TGG - Chr7:86896182-86896201 MsG0780041126.01.T01:intron 35.0%
GTTATGACAGTTATGCAGAT+AGG - Chr7:86896034-86896053 MsG0780041126.01.T01:intron 35.0%
TAACAAGAAATGACACATGC+TGG + Chr7:86897463-86897482 None:intergenic 35.0%
TAACTACTGTTTCACCATGA+AGG + Chr7:86898437-86898456 None:intergenic 35.0%
TACCCATTCTTGTAAAGAGT+GGG + Chr7:86896979-86896998 None:intergenic 35.0%
TCACATCGACATACAATCTA+AGG + Chr7:86898200-86898219 None:intergenic 35.0%
TCCTAAAATCTCAAGCTGAT+AGG + Chr7:86896828-86896847 None:intergenic 35.0%
TGAGAAGGAAGGAATTAAAC+TGG - Chr7:86896432-86896451 MsG0780041126.01.T01:intron 35.0%
TTGAAATCTGACTATCCAAG+TGG + Chr7:86896329-86896348 None:intergenic 35.0%
! CAATGCCTTTAGATGCTTTT+AGG - Chr7:86897372-86897391 MsG0780041126.01.T01:intron 35.0%
! GATATCCAATGGTATTGGAA+TGG - Chr7:86898244-86898263 MsG0780041126.01.T01:five_prime_UTR 35.0%
! TATGAGAAGCATATGCGATA+AGG + Chr7:86895988-86896007 None:intergenic 35.0%
! TGGACGATTTTATATCCCAA+CGG + Chr7:86897174-86897193 None:intergenic 35.0%
!! AAGCATCTAAAGGCATTGTT+TGG + Chr7:86897370-86897389 None:intergenic 35.0%
!! ATCTAAAGGCATTGTTTGGA+TGG + Chr7:86897366-86897385 None:intergenic 35.0%
!! CTTGAGATTTTAGGAGAGTT+GGG - Chr7:86896833-86896852 MsG0780041126.01.T01:intron 35.0%
!! TAAACGAAGCATTTTTCCAC+CGG + Chr7:86896226-86896245 None:intergenic 35.0%
!! TATTGCCAGAGTTTTTGAGA+AGG - Chr7:86896417-86896436 MsG0780041126.01.T01:intron 35.0%
!! TTGGATTAGGTTTTCGTTGA+TGG - Chr7:86895961-86895980 MsG0780041126.01.T01:intron 35.0%
!!! CTCTAGTGGTAGCTTTATTT+TGG + Chr7:86897583-86897602 None:intergenic 35.0%
AAGCCCACTCTTTACAAGAA+TGG - Chr7:86896973-86896992 MsG0780041126.01.T01:intron 40.0%
AATAAACATTTGAGCGGTGG+AGG + Chr7:86898488-86898507 None:intergenic 40.0%
AATCACACCATTGATGTCTC+AGG + Chr7:86895670-86895689 None:intergenic 40.0%
AATCTCAAGCTGATAGGCAA+AGG + Chr7:86896822-86896841 None:intergenic 40.0%
ACAGAGTCAACTCAGATGAT+AGG - Chr7:86896298-86896317 MsG0780041126.01.T01:intron 40.0%
ACTTGTAACCATGTGTATGC+TGG - Chr7:86896548-86896567 MsG0780041126.01.T01:intron 40.0%
AGAAGATCCTGAGACATCAA+TGG - Chr7:86895660-86895679 MsG0780041126.01.T01:three_prime_UTR 40.0%
AGATGATAGGTACTACCACT+TGG - Chr7:86896311-86896330 MsG0780041126.01.T01:intron 40.0%
AGCCCACTCTTTACAAGAAT+GGG - Chr7:86896974-86896993 MsG0780041126.01.T01:intron 40.0%
AGTTCATGTTGTACTGTACC+CGG - Chr7:86896089-86896108 MsG0780041126.01.T01:intron 40.0%
ATATCACCAAACAGTGGAGA+AGG + Chr7:86897843-86897862 None:intergenic 40.0%
CCAAAAACCTAAACGGTGTT+GGG + Chr7:86897539-86897558 None:intergenic 40.0%
CCAAATAAGTGAATCACAGC+AGG + Chr7:86898035-86898054 None:intergenic 40.0%
CCTGCTGTGATTCACTTATT+TGG - Chr7:86898032-86898051 MsG0780041126.01.T01:CDS 40.0%
CGACGGAATAAACATTTGAG+CGG + Chr7:86898494-86898513 None:intergenic 40.0%
CTTCGTTTAAGCGTAGAAAC+CGG - Chr7:86896237-86896256 MsG0780041126.01.T01:intron 40.0%
CTTGCAAAATTGTGGTCAAG+AGG - Chr7:86897644-86897663 MsG0780041126.01.T01:intron 40.0%
GACACTGGTGTATCAACATA+TGG + Chr7:86896366-86896385 None:intergenic 40.0%
GACTTACTATGAAAGCCGAA+CGG + Chr7:86896522-86896541 None:intergenic 40.0%
GATGCAACTGTGATATCCAA+TGG - Chr7:86898233-86898252 MsG0780041126.01.T01:five_prime_UTR 40.0%
TCCTTCCTTCTCAAAAACTC+TGG + Chr7:86896425-86896444 None:intergenic 40.0%
TTCAAAGCAAAAGTTCCGTC+AGG + Chr7:86897507-86897526 None:intergenic 40.0%
! GCCTATCAGCTTGAGATTTT+AGG - Chr7:86896824-86896843 MsG0780041126.01.T01:intron 40.0%
! TTTTCCAGGCATATCTCTAG+TGG + Chr7:86897597-86897616 None:intergenic 40.0%
!! GCTTGAGATTTTAGGAGAGT+TGG - Chr7:86896832-86896851 MsG0780041126.01.T01:intron 40.0%
!!! CTGGTTTCATTTTCAGGTGA+CGG - Chr7:86898372-86898391 MsG0780041126.01.T01:five_prime_UTR 40.0%
AAGAAGGTGAAGATGTGGCA+TGG + Chr7:86895817-86895836 None:intergenic 45.0%
AAGTGAATCACAGCAGGCTA+TGG + Chr7:86898029-86898048 None:intergenic 45.0%
AATCCACTCTCCAGTTACCA+AGG + Chr7:86896859-86896878 None:intergenic 45.0%
AGATGTGGCATGGTGAAGAA+TGG + Chr7:86895807-86895826 None:intergenic 45.0%
CAATCTAAGGACCTCGAACT+TGG + Chr7:86898187-86898206 None:intergenic 45.0%
CACAAACACCAGCATACACA+TGG + Chr7:86896559-86896578 None:intergenic 45.0%
CACATAAATAGAGCGGCCTT+AGG + Chr7:86897889-86897908 None:intergenic 45.0%
CATGGGATATCACCAAACAG+TGG + Chr7:86897849-86897868 None:intergenic 45.0%
CATGTGTATGCTGGTGTTTG+TGG - Chr7:86896557-86896576 MsG0780041126.01.T01:intron 45.0%
CATTAACACGCCCTTCAAAG+CGG - Chr7:86898146-86898165 MsG0780041126.01.T01:five_prime_UTR 45.0%
CGGAATAAACATTTGAGCGG+TGG + Chr7:86898491-86898510 None:intergenic 45.0%
CTGAAATCCTGAACATCCAC+CGG + Chr7:86896259-86896278 None:intergenic 45.0%
GATGCCAGTGAATCATCATC+CGG - Chr7:86896204-86896223 MsG0780041126.01.T01:intron 45.0%
GATTCCTGTGCACTACAACA+TGG - Chr7:86896622-86896641 MsG0780041126.01.T01:intron 45.0%
GCCAAAAACCTAAACGGTGT+TGG + Chr7:86897540-86897559 None:intergenic 45.0%
GTCATGAGTGTGCGAGAAAA+GGG - Chr7:86898270-86898289 MsG0780041126.01.T01:five_prime_UTR 45.0%
GTTCATGTTGTACTGTACCC+GGG - Chr7:86896090-86896109 MsG0780041126.01.T01:intron 45.0%
TGATGCAATTGCTCTCCTGA+CGG - Chr7:86897489-86897508 MsG0780041126.01.T01:intron 45.0%
TGCACAGGAATCACAGAGAA+AGG + Chr7:86896614-86896633 None:intergenic 45.0%
TGTCATGAGTGTGCGAGAAA+AGG - Chr7:86898269-86898288 MsG0780041126.01.T01:five_prime_UTR 45.0%
TTGACACCTTCTCCACTGTT+TGG - Chr7:86897834-86897853 MsG0780041126.01.T01:CDS 45.0%
! CAGTTTTCGGTTATGTGGAC+AGG + Chr7:86895854-86895873 None:intergenic 45.0%
! CGCAACTGTTGATTATGTCG+AGG - Chr7:86896489-86896508 MsG0780041126.01.T01:intron 45.0%
! GAACGCAGTTTTCGGTTATG+TGG + Chr7:86895859-86895878 None:intergenic 45.0%
! GCATACACGAACGCAGTTTT+CGG + Chr7:86895867-86895886 None:intergenic 45.0%
!! ATTTTAGGAGAGTTGGGCCT+TGG - Chr7:86896839-86896858 MsG0780041126.01.T01:intron 45.0%
!! CCCAACACCGTTTAGGTTTT+TGG - Chr7:86897536-86897555 MsG0780041126.01.T01:intron 45.0%
!! GCCAGAGTTTTTGAGAAGGA+AGG - Chr7:86896421-86896440 MsG0780041126.01.T01:intron 45.0%
!! TGCGTTTTGAACCAAGTTCG+AGG - Chr7:86898173-86898192 MsG0780041126.01.T01:five_prime_UTR 45.0%
!!! GAACAGGGCCTTGTTGATTT+TGG + Chr7:86897111-86897130 None:intergenic 45.0%
ACAAAACTGACATGTGGGCC+TGG + Chr7:86897696-86897715 None:intergenic 50.0%
ACAGAGTGGGTATGTTCCGT+TGG - Chr7:86897155-86897174 MsG0780041126.01.T01:CDS 50.0%
ACTCTCTCCCAACACCGTTT+AGG - Chr7:86897529-86897548 MsG0780041126.01.T01:intron 50.0%
CAGAGTGGGTATGTTCCGTT+GGG - Chr7:86897156-86897175 MsG0780041126.01.T01:CDS 50.0%
CGTTGGCAGCACGATTTCAA+CGG - Chr7:86895735-86895754 MsG0780041126.01.T01:three_prime_UTR 50.0%
CGTTTAAGCGTAGAAACCGG+TGG - Chr7:86896240-86896259 MsG0780041126.01.T01:intron 50.0%
GCTACCACTAGAGATATGCC+TGG - Chr7:86897590-86897609 MsG0780041126.01.T01:intron 50.0%
GGGAGAAGAAGGTGAAGATG+TGG + Chr7:86895822-86895841 None:intergenic 50.0%
GGTACGCATAGTTCCTAACC+CGG + Chr7:86896111-86896130 None:intergenic 50.0%
GGTTCCATGTTGTAGTGCAC+AGG + Chr7:86896629-86896648 None:intergenic 50.0%
GTACGCATAGTTCCTAACCC+GGG + Chr7:86896110-86896129 None:intergenic 50.0%
GTAGAAACCGGTGGATGTTC+AGG - Chr7:86896249-86896268 MsG0780041126.01.T01:intron 50.0%
TATGTGGACAGGTTCCACGT+CGG + Chr7:86895843-86895862 None:intergenic 50.0%
TCCACCGGATGATGATTCAC+TGG + Chr7:86896211-86896230 None:intergenic 50.0%
TGAAATCGTGCTGCCAACGA+TGG + Chr7:86895734-86895753 None:intergenic 50.0%
TGCAACCACCAACTGCACTT+GGG + Chr7:86898402-86898421 None:intergenic 50.0%
TGTCGAGGAGCTAATCCGTT+CGG - Chr7:86896504-86896523 MsG0780041126.01.T01:intron 50.0%
TGTTGTACTGTACCCGGGTT+AGG - Chr7:86896095-86896114 MsG0780041126.01.T01:intron 50.0%
!! AAACGCACATGCCGCTTTGA+AGG + Chr7:86898160-86898179 None:intergenic 50.0%
!! AACGCACATGCCGCTTTGAA+GGG + Chr7:86898159-86898178 None:intergenic 50.0%
ACGGAGAACCCAAGTGCAGT+TGG - Chr7:86898391-86898410 MsG0780041126.01.T01:five_prime_UTR 55.0%
ATGTGGACAGGTTCCACGTC+GGG + Chr7:86895842-86895861 None:intergenic 55.0%
CTGCAACCACCAACTGCACT+TGG + Chr7:86898403-86898422 None:intergenic 55.0%
GAGAACCCAAGTGCAGTTGG+TGG - Chr7:86898394-86898413 MsG0780041126.01.T01:five_prime_UTR 55.0%
GCCAGTGAATCATCATCCGG+TGG - Chr7:86896207-86896226 MsG0780041126.01.T01:intron 55.0%
GGTTTACGTTGCAGGGCTAC+AGG + Chr7:86897675-86897694 None:intergenic 55.0%
GTAGCCCTGCAACGTAAACC+AGG - Chr7:86897675-86897694 MsG0780041126.01.T01:intron 55.0%
TCGAAGACTCGCTCCATCGT+TGG - Chr7:86895718-86895737 MsG0780041126.01.T01:three_prime_UTR 55.0%
TGGGCCTGGTTTACGTTGCA+GGG + Chr7:86897682-86897701 None:intergenic 55.0%
TGTGCGAGAAAAGGGTCGTG+TGG - Chr7:86898278-86898297 MsG0780041126.01.T01:five_prime_UTR 55.0%
TTCACCTTCTTCTCCCGACG+TGG - Chr7:86895826-86895845 MsG0780041126.01.T01:three_prime_UTR 55.0%
TTGAGCGGTGGAGGAAAGTG+AGG + Chr7:86898479-86898498 None:intergenic 55.0%
! GAGAGTTGGGCCTTGGTAAC+TGG - Chr7:86896846-86896865 MsG0780041126.01.T01:intron 55.0%
AGCGGTGGAGGAAAGTGAGG+AGG + Chr7:86898476-86898495 None:intergenic 60.0%
CGGTGGAGGAAAGTGAGGAG+GGG + Chr7:86898474-86898493 None:intergenic 60.0%
GCGGTGGAGGAAAGTGAGGA+GGG + Chr7:86898475-86898494 None:intergenic 60.0%
GGTTCCACGTCGGGAGAAGA+AGG + Chr7:86895833-86895852 None:intergenic 60.0%
GTGGGCCTGGTTTACGTTGC+AGG + Chr7:86897683-86897702 None:intergenic 60.0%
! GGGCCTTGGTAACTGGAGAG+TGG - Chr7:86896853-86896872 MsG0780041126.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 86895645 86898671 86895645 ID=MsG0780041126.01;Name=MsG0780041126.01
Chr7 mRNA 86895645 86898671 86895645 ID=MsG0780041126.01.T01;Parent=MsG0780041126.01;Name=MsG0780041126.01.T01;_AED=0.50;_eAED=0.55;_QI=529|0.25|0.4|1|0.25|0.2|5|218|155
Chr7 exon 86895645 86895928 86895645 ID=MsG0780041126.01.T01:exon:19828;Parent=MsG0780041126.01.T01
Chr7 exon 86897153 86897216 86897153 ID=MsG0780041126.01.T01:exon:19827;Parent=MsG0780041126.01.T01
Chr7 exon 86897321 86897386 86897321 ID=MsG0780041126.01.T01:exon:19826;Parent=MsG0780041126.01.T01
Chr7 exon 86897765 86897890 86897765 ID=MsG0780041126.01.T01:exon:19825;Parent=MsG0780041126.01.T01
Chr7 exon 86897997 86898671 86897997 ID=MsG0780041126.01.T01:exon:19824;Parent=MsG0780041126.01.T01
Chr7 five_prime_UTR 86898143 86898671 86898143 ID=MsG0780041126.01.T01:five_prime_utr;Parent=MsG0780041126.01.T01
Chr7 CDS 86897997 86898142 86897997 ID=MsG0780041126.01.T01:cds;Parent=MsG0780041126.01.T01
Chr7 CDS 86897765 86897890 86897765 ID=MsG0780041126.01.T01:cds;Parent=MsG0780041126.01.T01
Chr7 CDS 86897321 86897386 86897321 ID=MsG0780041126.01.T01:cds;Parent=MsG0780041126.01.T01
Chr7 CDS 86897153 86897216 86897153 ID=MsG0780041126.01.T01:cds;Parent=MsG0780041126.01.T01
Chr7 CDS 86895863 86895928 86895863 ID=MsG0780041126.01.T01:cds;Parent=MsG0780041126.01.T01
Chr7 three_prime_UTR 86895645 86895862 86895645 ID=MsG0780041126.01.T01:three_prime_utr;Parent=MsG0780041126.01.T01
Gene Sequence

>MsG0780041126.01.T01

ATGAATGTGGAACAGAAAATGAAGGAATTGGATGCCAGTGAATCATCATCCGGTGGAAAAATGCTTCGTTTAAGCGTAGAAACCGGTGGATGTTCAGGATTTCAGTATGCTTTTAATTTGGATGACAGAGTCAACTCAGATGATAGAGTTTTTGAGAAGGAAGGAATTAAACTGGTTGTTGACAATATTTCATACGACTTTGTGAAAGGCGCAACTGTTGATTATGTCGAGGAGCTAATCCGTTCGGCTTTCATAGTAAGTCAAGCGCACTTAAAGCATGAGTTAGACTATGTGTGTGCAAAGTTGACATGCTTCAAGCCCACTCTTTACAAGAATGGATTGGAATCCAAAATCAACAAGGCCCTGTTCAAGAAATTTTTTTCAAAAAAAAAAACAGAGTGGGTGACGGAGAACCCAAGTGCAGTTGGTGGTTGCAGTTGTAAAAGTTCCTTCATGGTGAAACAGTAG
Protein sequence

>MsG0780041126.01.T01

MNVEQKMKELDASESSSGGKMLRLSVETGGCSGFQYAFNLDDRVNSDDRVFEKEGIKLVVDNISYDFVKGATVDYVEELIRSAFIVSQAHLKHELDYVCAKLTCFKPTLYKNGLESKINKALFKKFFSKKKTEWVTENPSAVGGCSCKSSFMVKQ*