AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047451.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047451.01.T01 MTR_4g127690 88.889 126 14 0 1 126 1 126 3.90e-71 213
MsG0880047451.01.T02 MTR_4g127690 90.476 126 6 2 1 120 1 126 2.52e-70 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047451.01.T01 AT5G57345 72.603 73 18 2 54 126 53 123 1.02e-27 102
MsG0880047451.01.T02 AT5G57345 53.782 119 48 4 5 120 9 123 5.65e-29 105

Find 18 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAATATTATATATAAAT+AGG 0.273221 8:-86525024 MsG0880047451.01.T02:intron
ACCAATTCTACCACCAGTTT+TGG 0.337468 8:+86524910 None:intergenic
GAATTGTTATTGTTGATTCT+TGG 0.352408 8:+86524848 None:intergenic
AAGAAGAATGAGAACAAGTT+AGG 0.368246 8:-86525001 MsG0880047451.01.T02:CDS
GAATCAACAATAACAATTCC+AGG 0.432239 8:-86524844 MsG0880047451.01.T02:intron
GATGCATCAGCTGCCAAAAC+TGG 0.451635 8:-86524923 MsG0880047451.01.T02:CDS
GCCAAAACTGGTGGTAGAAT+TGG 0.463723 8:-86524911 MsG0880047451.01.T02:CDS
TTGTTGATTCTTGGTGAGGA+AGG 0.491949 8:+86524857 None:intergenic
GCTGCTGGTGTGTTAACGTT+TGG 0.494174 8:-86524956 MsG0880047451.01.T02:CDS
GCAATGATTGCAGTGGCTGC+TGG 0.497359 8:-86524971 MsG0880047451.01.T02:CDS
TGTTGATTCTTGGTGAGGAA+GGG 0.549367 8:+86524858 None:intergenic
GCGAGGAGCGGATGATCTGA+AGG 0.565349 8:+86524880 None:intergenic
ATTCTTGGTGAGGAAGGGCG+AGG 0.590888 8:+86524863 None:intergenic
AAAACTGGTGGTAGAATTGG+TGG 0.598132 8:-86524908 MsG0880047451.01.T02:CDS
GTTATTGTTGATTCTTGGTG+AGG 0.615397 8:+86524853 None:intergenic
TGGTGAGGAAGGGCGAGGAG+CGG 0.629460 8:+86524868 None:intergenic
AAAGTTAGCAATGATTGCAG+TGG 0.664147 8:-86524978 MsG0880047451.01.T02:CDS
GCATCAGCTGCCAAAACTGG+TGG 0.706688 8:-86524920 MsG0880047451.01.T02:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGAAACAAAAAAAAT+TGG + Chr8:86524521-86524540 None:intergenic 10.0%
!! CTTGAATATTATATATAAAT+AGG - Chr8:86523162-86523181 MsG0880047451.01.T02:three_prime_UTR 10.0%
!! TGATTATACTATATACTTAT+AGG - Chr8:86523422-86523441 MsG0880047451.01.T02:intron 15.0%
!! AAGGAAAAATAAATGTTTCT+AGG - Chr8:86523377-86523396 MsG0880047451.01.T02:intron 20.0%
!! AATATGATCTCTAATGATAT+AGG + Chr8:86524696-86524715 None:intergenic 20.0%
!! AATGAAATCTCTTTCATAAT+TGG - Chr8:86524722-86524741 MsG0880047451.01.T02:intron 20.0%
!! ATAAACAAATAAGCAAAAAC+AGG - Chr8:86522892-86522911 MsG0880047451.01.T02:three_prime_UTR 20.0%
!! GTGTTTATATAGATGTTTAA+AGG - Chr8:86525190-86525209 MsG0880047451.01.T02:CDS 20.0%
!! TACAATTATCAACAAATACA+AGG + Chr8:86523682-86523701 None:intergenic 20.0%
!! TATATAGATGTTTAAAGGAA+TGG - Chr8:86525195-86525214 MsG0880047451.01.T02:CDS 20.0%
!!! TAGTTGTATTTTTCTTCTTT+GGG - Chr8:86523789-86523808 MsG0880047451.01.T02:intron 20.0%
!!! TATTTTTATACAGACAATGT+TGG - Chr8:86524535-86524554 MsG0880047451.01.T02:intron 20.0%
!!! TTCATTTTTGTTAGTTGTTT+AGG - Chr8:86523851-86523870 MsG0880047451.01.T02:intron 20.0%
!!! TTTAGTCTTATTCTGAAAAT+AGG - Chr8:86524485-86524504 MsG0880047451.01.T02:intron 20.0%
! AAATCTCTTTCATAATTGGA+AGG - Chr8:86524726-86524745 MsG0880047451.01.T02:intron 25.0%
! ACTAAGGAGTTTATAAATGA+TGG + Chr8:86524084-86524103 None:intergenic 25.0%
! AGTTTAATTATGATACCTAC+GGG + Chr8:86523642-86523661 None:intergenic 25.0%
! CAGTTTAATTATGATACCTA+CGG + Chr8:86523643-86523662 None:intergenic 25.0%
! GTAGAAATATATCTGTTAGT+TGG - Chr8:86524340-86524359 MsG0880047451.01.T02:intron 25.0%
! TAATACTACCTAGAGAAAAT+AGG + Chr8:86523491-86523510 None:intergenic 25.0%
! TATCTCAAAAGACCAAATAT+TGG + Chr8:86525241-86525260 None:intergenic 25.0%
! TCATGTTTACGATATTAGTT+GGG - Chr8:86523911-86523930 MsG0880047451.01.T02:intron 25.0%
! TGACAAACAGGTAAATAAAA+AGG + Chr8:86524186-86524205 None:intergenic 25.0%
!! GTAGTTGTATTTTTCTTCTT+TGG - Chr8:86523788-86523807 MsG0880047451.01.T02:intron 25.0%
!! TTTGCTTTGTTATACTTGAA+TGG - Chr8:86523137-86523156 MsG0880047451.01.T02:three_prime_UTR 25.0%
!!! GAATTGTTATTGTTGATTCT+TGG + Chr8:86523341-86523360 None:intergenic 25.0%
!!! TAGCGCTTTCATTTTTTTTA+GGG - Chr8:86524279-86524298 MsG0880047451.01.T02:intron 25.0%
!!! TTAGCGCTTTCATTTTTTTT+AGG - Chr8:86524278-86524297 MsG0880047451.01.T02:intron 25.0%
AACAATCTTCAACTCCATTA+AGG - Chr8:86523080-86523099 MsG0880047451.01.T02:three_prime_UTR 30.0%
AAGAAGAATGAGAACAAGTT+AGG - Chr8:86523185-86523204 MsG0880047451.01.T02:intron 30.0%
ACATATGTGTGACCAATATT+TGG - Chr8:86525226-86525245 MsG0880047451.01.T02:CDS 30.0%
AGTATGCGTTAGAAATTAAG+AGG + Chr8:86524451-86524470 None:intergenic 30.0%
CAACATCTATATAAATCCAC+GGG - Chr8:86524878-86524897 MsG0880047451.01.T02:CDS 30.0%
CAACTAATATCGTAAACATG+AGG + Chr8:86523912-86523931 None:intergenic 30.0%
CCAACATCTATATAAATCCA+CGG - Chr8:86524877-86524896 MsG0880047451.01.T02:CDS 30.0%
CCAACTGAGATATATACTTA+AGG - Chr8:86524640-86524659 MsG0880047451.01.T02:intron 30.0%
CCTTAAGTATATATCTCAGT+TGG + Chr8:86524643-86524662 None:intergenic 30.0%
CGTAGGTATCATAATTAAAC+TGG - Chr8:86523641-86523660 MsG0880047451.01.T02:intron 30.0%
CTAACAAAAATGAAGACTTG+TGG + Chr8:86523845-86523864 None:intergenic 30.0%
CTAGAGAAAATAGGTTAGAA+TGG + Chr8:86523482-86523501 None:intergenic 30.0%
CTCATGTTTACGATATTAGT+TGG - Chr8:86523910-86523929 MsG0880047451.01.T02:intron 30.0%
GAAAAAAAGAAAGCCTCATT+TGG + Chr8:86524164-86524183 None:intergenic 30.0%
GAATCAACAATAACAATTCC+AGG - Chr8:86523342-86523361 MsG0880047451.01.T02:intron 30.0%
GGTTAAAAAGTTCGAACAAA+TGG - Chr8:86524047-86524066 MsG0880047451.01.T02:intron 30.0%
GTTTGAACTTGAGTATTAGA+GGG - Chr8:86523886-86523905 MsG0880047451.01.T02:intron 30.0%
GTTTGATGTAGTTACCTTAA+TGG + Chr8:86523097-86523116 None:intergenic 30.0%
TGTTTGAACTTGAGTATTAG+AGG - Chr8:86523885-86523904 MsG0880047451.01.T02:intron 30.0%
TTCCAGGTATCTAACAAAAA+AGG - Chr8:86523358-86523377 MsG0880047451.01.T02:intron 30.0%
! CATTCTAACCTATTTTCTCT+AGG - Chr8:86523480-86523499 MsG0880047451.01.T02:intron 30.0%
! CTGTTTGTCACTTAGATATT+CGG - Chr8:86524196-86524215 MsG0880047451.01.T02:intron 30.0%
! GATATATTTCTACACTCCAT+TGG + Chr8:86524333-86524352 None:intergenic 30.0%
!! TGAAAGCGCTAAAATTTGAA+AGG + Chr8:86524270-86524289 None:intergenic 30.0%
!!! CTGCTTCTGTTTATGTTTTT+TGG - Chr8:86525034-86525053 MsG0880047451.01.T02:intron 30.0%
!!! GATATTCGGTTTTTTCTTCT+AGG - Chr8:86524210-86524229 MsG0880047451.01.T02:intron 30.0%
!!! TTCCTTTTTTGTTAGATACC+TGG + Chr8:86523363-86523382 None:intergenic 30.0%
AAAGTTAGCAATGATTGCAG+TGG - Chr8:86523208-86523227 MsG0880047451.01.T02:CDS 35.0%
ACAACAACTATAGCGACAAA+AGG + Chr8:86523710-86523729 None:intergenic 35.0%
ACAATGTTACCACACTCTAT+TGG + Chr8:86523992-86524011 None:intergenic 35.0%
ACTAAAGAGGGTTGTACATT+TGG - Chr8:86523939-86523958 MsG0880047451.01.T02:intron 35.0%
ATTCCAAATTTGCATCAAGG+AGG + Chr8:86523550-86523569 None:intergenic 35.0%
CAATGTTACCACACTCTATT+GGG + Chr8:86523991-86524010 None:intergenic 35.0%
CCGTGGATTTATATAGATGT+TGG + Chr8:86524880-86524899 None:intergenic 35.0%
CGAAATTAAGAAGTCTCACT+CGG + Chr8:86524121-86524140 None:intergenic 35.0%
CGAATATCTAAGTGACAAAC+AGG + Chr8:86524198-86524217 None:intergenic 35.0%
GGAATTCCAAATTTGCATCA+AGG + Chr8:86523553-86523572 None:intergenic 35.0%
GGTGAAAACAAGGAAAACTA+AGG + Chr8:86524100-86524119 None:intergenic 35.0%
GGTTGTACATTTGGTTACTT+CGG - Chr8:86523948-86523967 MsG0880047451.01.T02:intron 35.0%
TCCAACAAAATGAGACAGAT+AGG + Chr8:86524818-86524837 None:intergenic 35.0%
TGCAACTACAAACTATGCTT+AGG + Chr8:86523574-86523593 None:intergenic 35.0%
! AAAGTTGGGTTAAGAAGTGT+TGG + Chr8:86523001-86523020 None:intergenic 35.0%
! ACCTATCTGTCTCATTTTGT+TGG - Chr8:86524814-86524833 MsG0880047451.01.T02:intron 35.0%
! CACTTCTTAACCCAACTTTT+AGG - Chr8:86523002-86523021 MsG0880047451.01.T02:three_prime_UTR 35.0%
! GATGATGATTACTAGCTTGT+TGG - Chr8:86525112-86525131 MsG0880047451.01.T02:CDS 35.0%
!! AGTCCATTGGTTTGAACTAT+TGG + Chr8:86524386-86524405 None:intergenic 35.0%
!! ATGGAGAATTTTGAGTCCAT+TGG + Chr8:86524399-86524418 None:intergenic 35.0%
!! CAAGGAACACATTTTGATGT+CGG + Chr8:86522951-86522970 None:intergenic 35.0%
!! GTTATTGTTGATTCTTGGTG+AGG + Chr8:86523336-86523355 None:intergenic 35.0%
!!! ACATGGAAGCAGTTTTAAGT+AGG + Chr8:86524609-86524628 None:intergenic 35.0%
AAAACTGGTGGTAGAATTGG+TGG - Chr8:86523278-86523297 MsG0880047451.01.T02:CDS 40.0%
AAAGCCTCATTTGGACTTGA+GGG + Chr8:86524155-86524174 None:intergenic 40.0%
CATCTATATAAATCCACGGG+TGG - Chr8:86524881-86524900 MsG0880047451.01.T02:CDS 40.0%
CCTGGTGCAAAGAAAGAAAA+TGG + Chr8:86524974-86524993 None:intergenic 40.0%
GCAGTTGTGAGGAAATTCTT+GGG - Chr8:86525067-86525086 MsG0880047451.01.T02:intron 40.0%
GGTCCAATAGTTCAAACCAA+TGG - Chr8:86524380-86524399 MsG0880047451.01.T02:intron 40.0%
GTGGGAACATGGAAAAGTAA+TGG + Chr8:86524418-86524437 None:intergenic 40.0%
TAGTTGGCATTCTCAAGAGT+AGG - Chr8:86524356-86524375 MsG0880047451.01.T02:intron 40.0%
TGCAGTTGTGAGGAAATTCT+TGG - Chr8:86525066-86525085 MsG0880047451.01.T02:intron 40.0%
TTTCGTATCTGTATGTCGAC+AGG - Chr8:86524853-86524872 MsG0880047451.01.T02:CDS 40.0%
! ACCAATTCTACCACCAGTTT+TGG + Chr8:86523279-86523298 None:intergenic 40.0%
! CCATTTTCTTTCTTTGCACC+AGG - Chr8:86524971-86524990 MsG0880047451.01.T02:CDS 40.0%
! CGCTAAAATTTGAAAGGTGC+AGG + Chr8:86524264-86524283 None:intergenic 40.0%
! GGAGTTGAAGATTGTTGTTG+TGG + Chr8:86523076-86523095 None:intergenic 40.0%
! TGTACAACCCTCTTTAGTTC+AGG + Chr8:86523937-86523956 None:intergenic 40.0%
! TGTTCGAACTTTTTAACCGC+TGG + Chr8:86524045-86524064 None:intergenic 40.0%
! TTGGTGTTCTTAAGTGTAGC+AGG - Chr8:86524018-86524037 MsG0880047451.01.T02:intron 40.0%
! TTTTCTTCTAGGCTTGTGAG+AGG - Chr8:86524221-86524240 MsG0880047451.01.T02:intron 40.0%
!! AGTTGGTGAGATAAGAGACA+TGG + Chr8:86524626-86524645 None:intergenic 40.0%
!! GTTGTTGTTTGTCTCCTTGT+CGG - Chr8:86523722-86523741 MsG0880047451.01.T02:intron 40.0%
!! TGTTGATTCTTGGTGAGGAA+GGG + Chr8:86523331-86523350 None:intergenic 40.0%
!! TTGTTGATTCTTGGTGAGGA+AGG + Chr8:86523332-86523351 None:intergenic 40.0%
!! TTTTTAGGGACCAGTGAATG+AGG - Chr8:86524293-86524312 MsG0880047451.01.T02:intron 40.0%
AAGCCTCATTTGGACTTGAG+GGG + Chr8:86524154-86524173 None:intergenic 45.0%
ACCACACTCTATTGGGTCTT+TGG + Chr8:86523984-86524003 None:intergenic 45.0%
AGAGCAAGAAGACCCAGTTA+CGG + Chr8:86523767-86523786 None:intergenic 45.0%
AGTTGGGCCTGAACTAAAGA+GGG - Chr8:86523927-86523946 MsG0880047451.01.T02:intron 45.0%
ATACCTACGGGCATCAATGT+CGG + Chr8:86523630-86523649 None:intergenic 45.0%
GAAAGCCTCATTTGGACTTG+AGG + Chr8:86524156-86524175 None:intergenic 45.0%
GAAGACTTCTGACCGTAACT+GGG - Chr8:86523752-86523771 MsG0880047451.01.T02:intron 45.0%
GAGTGTGGTAACATTGTGAG+TGG - Chr8:86523995-86524014 MsG0880047451.01.T02:intron 45.0%
GCCAAAACTGGTGGTAGAAT+TGG - Chr8:86523275-86523294 MsG0880047451.01.T02:CDS 45.0%
GCTCCTCCTTGATGCAAATT+TGG - Chr8:86523544-86523563 MsG0880047451.01.T02:intron 45.0%
GTGGTAACATTGTGAGTGGT+TGG - Chr8:86523999-86524018 MsG0880047451.01.T02:intron 45.0%
GTTGTGAGGAAATTCTTGGG+AGG - Chr8:86525070-86525089 MsG0880047451.01.T02:intron 45.0%
TAGTTGGGCCTGAACTAAAG+AGG - Chr8:86523926-86523945 MsG0880047451.01.T02:intron 45.0%
TCCAAAGACCCAATAGAGTG+TGG - Chr8:86523980-86523999 MsG0880047451.01.T02:intron 45.0%
TCCTGCTGCTCCTAAAAGTT+GGG + Chr8:86523015-86523034 None:intergenic 45.0%
TGAAGACTTCTGACCGTAAC+TGG - Chr8:86523751-86523770 MsG0880047451.01.T02:intron 45.0%
TTGGCATTCTCAAGAGTAGG+AGG - Chr8:86524359-86524378 MsG0880047451.01.T02:intron 45.0%
! AGTCTCACTCGGTGAAAACA+AGG + Chr8:86524110-86524129 None:intergenic 45.0%
!! GAAGTGTTGGTGAAGAGATG+AGG + Chr8:86522988-86523007 None:intergenic 45.0%
!! TTTCTACACTCCATTGGCTC+TGG + Chr8:86524327-86524346 None:intergenic 45.0%
AGCCTCATTTGGACTTGAGG+GGG + Chr8:86524153-86524172 None:intergenic 50.0%
AGTCTTCACCAAAGCCGACA+AGG + Chr8:86523739-86523758 None:intergenic 50.0%
ATTAAGAGGTCCCACACGTG+TGG + Chr8:86524437-86524456 None:intergenic 50.0%
CTTAAGTGTAGCAGGTCCAG+CGG - Chr8:86524026-86524045 MsG0880047451.01.T02:intron 50.0%
GATGCATCAGCTGCCAAAAC+TGG - Chr8:86523263-86523282 MsG0880047451.01.T02:CDS 50.0%
GCTGCTGGTGTGTTAACGTT+TGG - Chr8:86523230-86523249 MsG0880047451.01.T02:CDS 50.0%
GGTATCAGAGCCTCATTCAC+TGG + Chr8:86524306-86524325 None:intergenic 50.0%
GTCCTGCTGCTCCTAAAAGT+TGG + Chr8:86523016-86523035 None:intergenic 50.0%
TACGGTGGTGTGCCATACTA+TGG - Chr8:86524929-86524948 MsG0880047451.01.T02:CDS 50.0%
TTAAGAGGTCCCACACGTGT+GGG + Chr8:86524436-86524455 None:intergenic 50.0%
TTCCATGTTCCCACACGTGT+GGG - Chr8:86524424-86524443 MsG0880047451.01.T02:intron 50.0%
TTTCCATGTTCCCACACGTG+TGG - Chr8:86524423-86524442 MsG0880047451.01.T02:intron 50.0%
! GAGGAAGCTTTGCTGTGACA+AGG + Chr8:86522969-86522988 None:intergenic 50.0%
! TTTGCATCAAGGAGGAGCGT+TGG + Chr8:86523542-86523561 None:intergenic 50.0%
!! ACCCAACTTTTAGGAGCAGC+AGG - Chr8:86523011-86523030 MsG0880047451.01.T02:three_prime_UTR 50.0%
!! ACTAGGTGGTGGATACGGTA+CGG - Chr8:86524911-86524930 MsG0880047451.01.T02:CDS 50.0%
!! CCATACTATGGTGGTGGTTG+GGG - Chr8:86524941-86524960 MsG0880047451.01.T02:CDS 50.0%
!! GCCATACTATGGTGGTGGTT+GGG - Chr8:86524940-86524959 MsG0880047451.01.T02:CDS 50.0%
!! GTTTGTCTCCTTGTCGGCTT+TGG - Chr8:86523728-86523747 MsG0880047451.01.T02:intron 50.0%
!! TGCCATACTATGGTGGTGGT+TGG - Chr8:86524939-86524958 MsG0880047451.01.T02:CDS 50.0%
ATTCTTGGTGAGGAAGGGCG+AGG + Chr8:86523326-86523345 None:intergenic 55.0%
CCAACGCCTACTGCAACACT+CGG + Chr8:86524998-86525017 None:intergenic 55.0%
CCCCAACCACCACCATAGTA+TGG + Chr8:86524944-86524963 None:intergenic 55.0%
GCAATGATTGCAGTGGCTGC+TGG - Chr8:86523215-86523234 MsG0880047451.01.T02:CDS 55.0%
GCATCAGCTGCCAAAACTGG+TGG - Chr8:86523266-86523285 MsG0880047451.01.T02:CDS 55.0%
GCCTCATTTGGACTTGAGGG+GGG + Chr8:86524152-86524171 None:intergenic 55.0%
GGTGGTGTGCCATACTATGG+TGG - Chr8:86524932-86524951 MsG0880047451.01.T02:CDS 55.0%
GGTGTGCCATACTATGGTGG+TGG - Chr8:86524935-86524954 MsG0880047451.01.T02:CDS 55.0%
GTACCGTATCCACCACCTAG+TGG + Chr8:86524912-86524931 None:intergenic 55.0%
TCCCCCCTCAAGTCCAAATG+AGG - Chr8:86524148-86524167 MsG0880047451.01.T02:intron 55.0%
! GGCTCTGATACCAGAGCCAA+TGG - Chr8:86524314-86524333 MsG0880047451.01.T02:intron 55.0%
!! ACTATGGTGGTGGTTGGGGA+TGG - Chr8:86524945-86524964 MsG0880047451.01.T02:CDS 55.0%
!! AGTGTTGCAGTAGGCGTTGG+AGG - Chr8:86524998-86525017 MsG0880047451.01.T02:CDS 55.0%
!! CCTCCACTAGGTGGTGGATA+CGG - Chr8:86524906-86524925 MsG0880047451.01.T02:CDS 55.0%
!! CTTTTAGGAGCAGCAGGACG+AGG - Chr8:86523017-86523036 MsG0880047451.01.T02:three_prime_UTR 55.0%
CAGCAGGACGAGGAAGACTG+TGG - Chr8:86523027-86523046 MsG0880047451.01.T02:three_prime_UTR 60.0%
CCGTATCCACCACCTAGTGG+AGG + Chr8:86524909-86524928 None:intergenic 60.0%
CCTACGGGCATCAATGTCGG+AGG + Chr8:86523627-86523646 None:intergenic 60.0%
CCTACTGCAACACTCGGACC+TGG + Chr8:86524992-86525011 None:intergenic 60.0%
CCTCCGACATTGATGCCCGT+AGG - Chr8:86523624-86523643 MsG0880047451.01.T02:intron 60.0%
GCGAGGAGCGGATGATCTGA+AGG + Chr8:86523309-86523328 None:intergenic 60.0%
GTCCCACACGTGTGGGAACA+TGG + Chr8:86524429-86524448 None:intergenic 60.0%
TCTAGGCTTGTGAGAGGCCC+TGG - Chr8:86524227-86524246 MsG0880047451.01.T02:intron 60.0%
! CCAGGTCCGAGTGTTGCAGT+AGG - Chr8:86524989-86525008 MsG0880047451.01.T02:CDS 60.0%
! CCGAGTGTTGCAGTAGGCGT+TGG - Chr8:86524995-86525014 MsG0880047451.01.T02:CDS 60.0%
! GAAAGGTGCAGGTAGCCGCA+CGG + Chr8:86524253-86524272 None:intergenic 60.0%
! GTGCTGCTGCTGCAGTTGTG+AGG - Chr8:86525056-86525075 MsG0880047451.01.T02:intron 60.0%
!! AGGTGGTGGATACGGTACGG+TGG - Chr8:86524914-86524933 MsG0880047451.01.T02:CDS 60.0%
!! GTTGCAGTAGGCGTTGGAGG+TGG - Chr8:86525001-86525020 MsG0880047451.01.T02:CDS 60.0%
TGGTGAGGAAGGGCGAGGAG+CGG + Chr8:86523321-86523340 None:intergenic 65.0%
GTGGCGCCTCCACTAGGTGG+TGG - Chr8:86524900-86524919 MsG0880047451.01.T02:CDS 70.0%
TGCAGGTAGCCGCACGGCCA+GGG + Chr8:86524247-86524266 None:intergenic 70.0%
TGTGAGAGGCCCTGGCCGTG+CGG - Chr8:86524235-86524254 MsG0880047451.01.T02:intron 70.0%
CCACGGGTGGCGCCTCCACT+AGG - Chr8:86524894-86524913 MsG0880047451.01.T02:CDS 75.0%
CGGGTGGCGCCTCCACTAGG+TGG - Chr8:86524897-86524916 MsG0880047451.01.T02:CDS 75.0%
GTGCAGGTAGCCGCACGGCC+AGG + Chr8:86524248-86524267 None:intergenic 75.0%
!! CCTAGTGGAGGCGCCACCCG+TGG + Chr8:86524897-86524916 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 86522890 86525318 86522890 ID=MsG0880047451.01;Name=MsG0880047451.01
Chr8 mRNA 86522890 86525318 86522890 ID=MsG0880047451.01.T01;Parent=MsG0880047451.01;Name=MsG0880047451.01.T01;_AED=0.47;_eAED=0.47;_QI=69|0.5|0.66|1|0|0|3|308|157
Chr8 exon 86524845 86525039 86524845 ID=MsG0880047451.01.T01:exon:2063;Parent=MsG0880047451.01.T01
Chr8 five_prime_UTR 86525250 86525318 86525250 ID=MsG0880047451.01.T01:five_prime_utr;Parent=MsG0880047451.01.T01
Chr8 CDS 86525107 86525249 86525107 ID=MsG0880047451.01.T01:cds;Parent=MsG0880047451.01.T01
Chr8 CDS 86524845 86525039 86524845 ID=MsG0880047451.01.T01:cds;Parent=MsG0880047451.01.T01
Chr8 CDS 86523198 86523333 86523198 ID=MsG0880047451.01.T01:cds;Parent=MsG0880047451.01.T01
Chr8 three_prime_UTR 86522890 86523197 86522890 ID=MsG0880047451.01.T01:three_prime_utr;Parent=MsG0880047451.01.T01
Chr8 mRNA 86522890 86525318 86522890 ID=MsG0880047451.01.T02;Parent=MsG0880047451.01;Name=MsG0880047451.01.T02;_AED=0.47;_eAED=0.47;_QI=69|0.5|0.66|1|0|0|3|308|151
Chr8 exon 86524845 86525021 86524845 ID=MsG0880047451.01.T02:exon:2065;Parent=MsG0880047451.01.T02
Chr8 five_prime_UTR 86525250 86525318 86525250 ID=MsG0880047451.01.T02:five_prime_utr;Parent=MsG0880047451.01.T02
Chr8 CDS 86525107 86525249 86525107 ID=MsG0880047451.01.T02:cds;Parent=MsG0880047451.01.T02
Chr8 CDS 86524845 86525021 86524845 ID=MsG0880047451.01.T02:cds;Parent=MsG0880047451.01.T02
Chr8 CDS 86523198 86523333 86523198 ID=MsG0880047451.01.T02:cds;Parent=MsG0880047451.01.T02
Chr8 three_prime_UTR 86522890 86523197 86522890 ID=MsG0880047451.01.T02:three_prime_utr;Parent=MsG0880047451.01.T02
Gene Sequence

>MsG0880047451.01.T01

ATGTGTTCCTTGTCACAGCAAAGCTTCCTCATCTCTTCACCAACACTTCTTAACCCAACTTTTAGGAGCAGCAGGACGAGGAAGACTGTGGTTGTCTACTGCAGTTGCACACAGCCACAACAACAATCTTCAACTCCATTAAGATTATATATAAATAGGAAGAAGAATGAGAACAAGTTAGGAAAGTTAGCAATGATTGCAGTGGCTGCTGGTGTGTTAACGTTTGGATCAGTTCATGATGCATCAGCTGCCAAAACTGGTGGTAGAATTGGTGGTCAGTCCTTCAGATCATCCGCTCCTCGCCCTTCCTCACCAAGAATCAACAATAACAATTCCAGGACCAACATCTATATAAATCCACGGGTGGCGCCTCCACTAGGTGGTGGATACGGTACGGTGGTGTGCCATACTATGGTGGTGGTTGGGGATGGTCTCCATTTTCTTTCTTTGCACCAGGTCCGAGTGTTGCAGTAG

>MsG0880047451.01.T02

ATGTGTTCCTTGTCACAGCAAAGCTTCCTCATCTCTTCACCAACACTTCTTAACCCAACTTTTAGGAGCAGCAGGACGAGGAAGACTGTGGTTGTCTACTGCAGTTGCACACAGCCACAACAACAATCTTCAACTCCATTAAGGAAGAATGAGAACAAGTTAGGAAAGTTAGCAATGATTGCAGTGGCTGCTGGTGTGTTAACGTTTGGATCAGTTCATGATGCATCAGCTGCCAAAACTGGTGGTAGAATTGGTGGTCAGTCCTTCAGATCATCCGCTCCTCGCCCTTCCTCACCAAGAATCAACAATAACAATTCCAGGACCAACATCTATATAAATCCACGGGTGGCGCCTCCACTAGGTGGTGGATACGGTACGGTGGTGTGCCATACTATGGTGGTGGTTGGGGATGGTCTCCATTTTCTTTCTTTGCACCAGGTCCGAGTGTTGCAGTAG

Protein sequence

>MsG0880047451.01.T01

MCSLSQQSFLISSPTLLNPTFRSSRTRKTVVVYCSCTQPQQQSSTPLRLYINRKKNENKLGKLAMIAVAAGVLTFGSVHDASAAKTGGRIGGQSFRSSAPRPSSPRINNNNSRTNIYINPRVAPPLGGGYGTVVCHTMVVVGDGLHFLSLHQVRVLQ*

>MsG0880047451.01.T02

MCSLSQQSFLISSPTLLNPTFRSSRTRKTVVVYCSCTQPQQQSSTPLRKNENKLGKLAMIAVAAGVLTFGSVHDASAAKTGGRIGGQSFRSSAPRPSSPRINNNNSRTNIYINPRVAPPLGGGYGTVVCHTMVVVGDGLHFLSLHQVRVLQ*