AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044105.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044105.01.T01 MTR_8g046460 94.030 268 10 2 1 262 1 268 2.32e-180 496
MsG0880044105.01.T01 MTR_2g064370 70.896 268 71 4 1 262 1 267 4.05e-130 370
MsG0880044105.01.T01 MTR_8g028425 57.143 154 63 2 72 223 92 244 5.89e-65 203
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044105.01.T01 AT1G16320 66.953 233 71 2 31 262 46 273 2.53e-117 337
MsG0880044105.01.T01 AT1G79510 60.714 280 87 5 1 262 1 275 7.57e-117 336
MsG0880044105.01.T01 AT1G79510 60.714 280 87 5 1 262 1 275 7.57e-117 336
MsG0880044105.01.T01 AT2G46220 57.325 157 64 2 69 223 81 236 3.36e-66 206

Find 65 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTGTGCAGTGAAATTT+TGG 0.167818 8:+35633933 None:intergenic
GATGAAACCGGTTTCGGTTT+TGG 0.220818 8:-35631950 MsG0880044105.01.T01:CDS
GACCCTTTGAACACATTTAC+TGG 0.240823 8:-35632234 MsG0880044105.01.T01:CDS
AGGTACTTCTCGGTATAAAT+TGG 0.261999 8:-35632037 MsG0880044105.01.T01:CDS
AGAAGTACAAGTTGATCTTT+TGG 0.270946 8:-35632206 MsG0880044105.01.T01:CDS
ACCTTAATTATGATATTTAT+AGG 0.278702 8:-35633784 MsG0880044105.01.T01:intron
ACCTATAAATATCATAATTA+AGG 0.297853 8:+35633783 None:intergenic
CCCCATGAAAATGTTGGATT+TGG 0.313331 8:+35631901 None:intergenic
TGGATTCTAGTTCATGTTCA+TGG 0.337564 8:-35631873 MsG0880044105.01.T01:CDS
TGTATAGTATAGATTATAAT+AGG 0.348269 8:-35631728 MsG0880044105.01.T01:three_prime_UTR
GTTTGGATGTATACAGAATA+TGG 0.351747 8:-35632143 MsG0880044105.01.T01:CDS
AGTCAAGAGTGTATATAGAT+AGG 0.353666 8:-35631653 MsG0880044105.01.T01:three_prime_UTR
TTGATGTTTGAATCTTGATT+TGG 0.357445 8:+35634018 None:intergenic
GAATAAAGAACATTGAGAAA+TGG 0.384275 8:+35633976 None:intergenic
TAGGTTAGATGTAATGAATT+TGG 0.393462 8:-35631709 MsG0880044105.01.T01:three_prime_UTR
TGTTTATCTTGAGTAGCTAA+TGG 0.394872 8:+35633896 None:intergenic
TTTGTTTCGCGAGATTGGTT+TGG 0.396562 8:-35632160 MsG0880044105.01.T01:CDS
GAAGATGATGAAACCGGTTT+CGG 0.396965 8:-35631956 MsG0880044105.01.T01:CDS
AATAAAGAACATTGAGAAAT+GGG 0.407183 8:+35633977 None:intergenic
GTTGTTACCACCAGATGGTT+TGG 0.412534 8:-35631803 MsG0880044105.01.T01:CDS
GTGAATTTCAAGGTACTTCT+CGG 0.412707 8:-35632047 MsG0880044105.01.T01:CDS
GGAACTTGAGGGGTGTGCCT+AGG 0.417152 8:-35632089 MsG0880044105.01.T01:CDS
GAACTTGAGGGGTGTGCCTA+GGG 0.426698 8:-35632088 MsG0880044105.01.T01:CDS
ACCAAATCCAAAACCGAAAC+CGG 0.442141 8:+35631943 None:intergenic
AATGTTGGATTTGGACTAGC+AGG 0.451399 8:+35631910 None:intergenic
GGGGTGTGCCTAGGGTTCCA+TGG 0.454206 8:-35632080 MsG0880044105.01.T01:CDS
GTCAAGAGTGTATATAGATA+GGG 0.462156 8:-35631652 MsG0880044105.01.T01:three_prime_UTR
ATAAACCATTCAAAATTCAA+TGG 0.462536 8:-35634083 MsG0880044105.01.T01:exon
GGGTGTGCCTAGGGTTCCAT+GGG 0.462556 8:-35632079 MsG0880044105.01.T01:CDS
CAGAGAATGTGATATTGATC+AGG 0.478427 8:-35632113 MsG0880044105.01.T01:CDS
TACCAGTAAATGTGTTCAAA+GGG 0.481927 8:+35632232 None:intergenic
TTGAATCTTGATTTGGATTG+AGG 0.482117 8:+35634025 None:intergenic
TCCACAGAAGATGATGAAAC+CGG 0.487224 8:-35631962 MsG0880044105.01.T01:CDS
GAACATGTAGCCAAACCATC+TGG 0.493057 8:+35631793 None:intergenic
ATACCAGTAAATGTGTTCAA+AGG 0.496720 8:+35632231 None:intergenic
TTTCACTGCACAAGTTGCTC+AGG 0.498105 8:-35633927 MsG0880044105.01.T01:CDS
GAAGCTAAAGGTGAATTTCA+AGG 0.517611 8:-35632057 MsG0880044105.01.T01:CDS
ATCAATATCACATTCTCTGA+AGG 0.533171 8:+35632117 None:intergenic
AATTCACCTTTAGCTTCCCA+TGG 0.534577 8:+35632063 None:intergenic
GAGAATGTGTGTGTAATTTG+AGG 0.534640 8:+35634142 None:intergenic
TTAGCTTCCCATGGAACCCT+AGG 0.536034 8:+35632072 None:intergenic
TATTGATCAGGTGGAACTTG+AGG 0.540071 8:-35632101 MsG0880044105.01.T01:CDS
AAAGGACCCCATGAAAATGT+TGG 0.541364 8:+35631895 None:intergenic
ATTGATCAGGTGGAACTTGA+GGG 0.551874 8:-35632100 MsG0880044105.01.T01:CDS
ACCGGTTTCATCATCTTCTG+TGG 0.561359 8:+35631961 None:intergenic
AGGGTTCCATGGGAAGCTAA+AGG 0.578430 8:-35632069 MsG0880044105.01.T01:CDS
GAAAGATTGAGATTGCAAAG+AGG 0.578460 8:+35634055 None:intergenic
AGGTCTTTAACAAAGATCAA+AGG 0.587544 8:+35633803 None:intergenic
AGACAGTTGTTACCACCAGA+TGG 0.589181 8:-35631808 MsG0880044105.01.T01:CDS
ATATGCTATACAGATAGAGA+TGG 0.599230 8:-35631597 MsG0880044105.01.T01:three_prime_UTR
TAAACAGAATCAGCATCAGA+AGG 0.609028 8:-35633879 MsG0880044105.01.T01:CDS
AGAATGTGATATTGATCAGG+TGG 0.610163 8:-35632110 MsG0880044105.01.T01:CDS
CTTCTCGGTATAAATTGGAT+CGG 0.610878 8:-35632032 MsG0880044105.01.T01:CDS
TCAAGCAGTTAAGCACACAT+TGG 0.624208 8:-35631839 MsG0880044105.01.T01:CDS
TCTATACTATACATTGTCAA+CGG 0.630114 8:+35631738 None:intergenic
CGGTATAAATTGGATCGGAA+CGG 0.634092 8:-35632027 MsG0880044105.01.T01:CDS
AGAGTGTATATAGATAGGGA+TGG 0.635655 8:-35631648 MsG0880044105.01.T01:three_prime_UTR
GAACATGAACTAGAATCCAA+AGG 0.647700 8:+35631877 None:intergenic
TGCTGTTAGAACCCTTCGTG+AGG 0.651000 8:-35633831 MsG0880044105.01.T01:CDS
TTGATCAGGTGGAACTTGAG+GGG 0.654298 8:-35632099 MsG0880044105.01.T01:CDS
CAAAGGCATATCCTCACGAA+GGG 0.657035 8:+35633820 None:intergenic
ATGTTGGATTTGGACTAGCA+GGG 0.662829 8:+35631911 None:intergenic
TCAAAGGCATATCCTCACGA+AGG 0.664210 8:+35633819 None:intergenic
CATGTAGCCAAACCATCTGG+TGG 0.698747 8:+35631796 None:intergenic
ATGTGTTTAAGCATTATGAG+TGG 0.720578 8:+35634165 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATTAACAAAAAAAAAA+TGG + Chr8:35632692-35632711 None:intergenic 10.0%
!! AAAATCAAAATAATAAGATC+TGG - Chr8:35633035-35633054 MsG0880044105.01.T01:intron 15.0%
!! AATAACTTTGTACATTATTT+GGG + Chr8:35632389-35632408 None:intergenic 15.0%
!! ACCTATAAATATCATAATTA+AGG + Chr8:35631990-35632009 None:intergenic 15.0%
!! ACCTTAATTATGATATTTAT+AGG - Chr8:35631986-35632005 MsG0880044105.01.T01:CDS 15.0%
!! GATGATGTAATTAATATTTA+TGG - Chr8:35632131-35632150 MsG0880044105.01.T01:CDS 15.0%
!! TAATAACTTTGTACATTATT+TGG + Chr8:35632390-35632409 None:intergenic 15.0%
!! TGTATAGTATAGATTATAAT+AGG - Chr8:35634042-35634061 MsG0880044105.01.T01:CDS 15.0%
!!! AAAAATTGGATTTTTAATGT+TGG - Chr8:35632092-35632111 MsG0880044105.01.T01:CDS 15.0%
!!! AAAATTGGATTTTTAATGTT+GGG - Chr8:35632093-35632112 MsG0880044105.01.T01:CDS 15.0%
!!! GATAAAATTGTATTTTCTAA+TGG - Chr8:35633125-35633144 MsG0880044105.01.T01:intron 15.0%
!!! TAAAAAAAGTTAATTTTGAG+TGG - Chr8:35633425-35633444 MsG0880044105.01.T01:intron 15.0%
!!! TAATTTGAATTGTGTTATTT+AGG - Chr8:35632066-35632085 MsG0880044105.01.T01:CDS 15.0%
!!! TTGCTTTTCATATAAATATA+TGG - Chr8:35632039-35632058 MsG0880044105.01.T01:CDS 15.0%
!! AAAATCTACAAAATCAAGAT+TGG + Chr8:35632746-35632765 None:intergenic 20.0%
!! AATAAAGAACATTGAGAAAT+GGG + Chr8:35631796-35631815 None:intergenic 20.0%
!! AATTAAAAGAAACCATAGTT+AGG - Chr8:35633321-35633340 MsG0880044105.01.T01:intron 20.0%
!! ATAAACCATTCAAAATTCAA+TGG - Chr8:35631687-35631706 MsG0880044105.01.T01:three_prime_UTR 20.0%
!! ATAACTTTGTACATTATTTG+GGG + Chr8:35632388-35632407 None:intergenic 20.0%
!! ATTTAAAAGAGAAGAGTAAA+AGG - Chr8:35632842-35632861 MsG0880044105.01.T01:intron 20.0%
!! TATAAACAGTGATTGAATAT+TGG - Chr8:35632953-35632972 MsG0880044105.01.T01:intron 20.0%
!! TTTAAAAGAGAAGAGTAAAA+GGG - Chr8:35632843-35632862 MsG0880044105.01.T01:intron 20.0%
!!! AACTATGGTTTCTTTTAATT+TGG + Chr8:35633321-35633340 None:intergenic 20.0%
!!! AATTTTGAGTGGAAAAAAAT+TGG - Chr8:35633436-35633455 MsG0880044105.01.T01:intron 20.0%
!!! ATTTTGAGTGGAAAAAAATT+GGG - Chr8:35633437-35633456 MsG0880044105.01.T01:intron 20.0%
!!! GTTAATATAAAAGAGTGTTT+TGG - Chr8:35632807-35632826 MsG0880044105.01.T01:intron 20.0%
!!! TAGTATTTAACTTATACATC+AGG - Chr8:35633201-35633220 MsG0880044105.01.T01:intron 20.0%
!!! TGTTATTTAGGTGAAAAAAT+TGG - Chr8:35632078-35632097 MsG0880044105.01.T01:CDS 20.0%
!!! TTGAGTTTGATAATTTTTCA+GGG - Chr8:35633496-35633515 MsG0880044105.01.T01:intron 20.0%
! AAAAAATGATCTTGAAGTAG+AGG + Chr8:35632647-35632666 None:intergenic 25.0%
! AACCATATATTCACATACAA+AGG + Chr8:35632159-35632178 None:intergenic 25.0%
! ACCATATATTCACATACAAA+GGG + Chr8:35632158-35632177 None:intergenic 25.0%
! CTCCTAAAAATATTTAGTAG+TGG - Chr8:35633084-35633103 MsG0880044105.01.T01:intron 25.0%
! GAATAAAGAACATTGAGAAA+TGG + Chr8:35631797-35631816 None:intergenic 25.0%
! TACTGTGTATTCCTATAATA+GGG + Chr8:35632354-35632373 None:intergenic 25.0%
! TAGGTTAGATGTAATGAATT+TGG - Chr8:35634061-35634080 MsG0880044105.01.T01:CDS 25.0%
! TATATCATACACCCTATTAT+AGG - Chr8:35632340-35632359 MsG0880044105.01.T01:intron 25.0%
! TCTATACTATACATTGTCAA+CGG + Chr8:35634035-35634054 None:intergenic 25.0%
! TGAATCCATTCTGAATTATA+AGG + Chr8:35632524-35632543 None:intergenic 25.0%
! TGTTATTCATGTTCAATGTT+TGG - Chr8:35632886-35632905 MsG0880044105.01.T01:intron 25.0%
! TTAATTCTGAGTAATCTGTA+AGG - Chr8:35632195-35632214 MsG0880044105.01.T01:CDS 25.0%
! TTGATGTTTGAATCTTGATT+TGG + Chr8:35631755-35631774 None:intergenic 25.0%
!! AAAAGCCATTGAATTTTGAA+TGG + Chr8:35631695-35631714 None:intergenic 25.0%
!! AAAATTGTTGTTGTTGTTGT+AGG - Chr8:35632990-35633009 MsG0880044105.01.T01:intron 25.0%
!! ATTGAATATTGGTTGCATTT+GGG - Chr8:35632964-35632983 MsG0880044105.01.T01:intron 25.0%
!! CACCACTACTAAATATTTTT+AGG + Chr8:35633089-35633108 None:intergenic 25.0%
!! GTATTTTCTAATGGTTTACA+CGG - Chr8:35633134-35633153 MsG0880044105.01.T01:intron 25.0%
!! TATAGGTAATTTTCTCATCT+GGG - Chr8:35632003-35632022 MsG0880044105.01.T01:CDS 25.0%
!! TTATAGGTAATTTTCTCATC+TGG - Chr8:35632002-35632021 MsG0880044105.01.T01:CDS 25.0%
!!! CACTACTAAATATTTTTAGG+AGG + Chr8:35633086-35633105 None:intergenic 25.0%
!!! CTTTTTTTATCCATACAAAG+TGG + Chr8:35633414-35633433 None:intergenic 25.0%
!!! GTTGAGTTTGATAATTTTTC+AGG - Chr8:35633495-35633514 MsG0880044105.01.T01:intron 25.0%
!!! TTATTTTGTGCAAAAAGAGT+TGG - Chr8:35633463-35633482 MsG0880044105.01.T01:intron 25.0%
AAAAACACTATTACTCTGTG+GGG + Chr8:35632497-35632516 None:intergenic 30.0%
ACCCTTTGTATGTGAATATA+TGG - Chr8:35632154-35632173 MsG0880044105.01.T01:CDS 30.0%
AGGTCTTTAACAAAGATCAA+AGG + Chr8:35631970-35631989 None:intergenic 30.0%
ATACCAGTAAATGTGTTCAA+AGG + Chr8:35633542-35633561 None:intergenic 30.0%
ATATGCTATACAGATAGAGA+TGG - Chr8:35634173-35634192 MsG0880044105.01.T01:five_prime_UTR 30.0%
ATCAATATCACATTCTCTGA+AGG + Chr8:35633656-35633675 None:intergenic 30.0%
ATGGTAAAATTTCCTACAGT+TGG + Chr8:35632446-35632465 None:intergenic 30.0%
ATGTGTTTAAGCATTATGAG+TGG + Chr8:35631608-35631627 None:intergenic 30.0%
CAAAAACACTATTACTCTGT+GGG + Chr8:35632498-35632517 None:intergenic 30.0%
CTACTGTGTATTCCTATAAT+AGG + Chr8:35632355-35632374 None:intergenic 30.0%
GAAAAAAACAGTTCACTAAG+TGG + Chr8:35634013-35634032 None:intergenic 30.0%
GTTTGGATGTATACAGAATA+TGG - Chr8:35633627-35633646 MsG0880044105.01.T01:intron 30.0%
TACCAGTAAATGTGTTCAAA+GGG + Chr8:35633541-35633560 None:intergenic 30.0%
TGGAACCTTATAATTCAGAA+TGG - Chr8:35632516-35632535 MsG0880044105.01.T01:intron 30.0%
TGTTTATCTTGAGTAGCTAA+TGG + Chr8:35631877-35631896 None:intergenic 30.0%
! AGTCAAGAGTGTATATAGAT+AGG - Chr8:35634117-35634136 MsG0880044105.01.T01:five_prime_UTR 30.0%
! GATTGAATATTGGTTGCATT+TGG - Chr8:35632963-35632982 MsG0880044105.01.T01:intron 30.0%
! GGGTAGAATTGGAATTTTTA+TGG + Chr8:35632465-35632484 None:intergenic 30.0%
! GTCAAGAGTGTATATAGATA+GGG - Chr8:35634118-35634137 MsG0880044105.01.T01:five_prime_UTR 30.0%
! TCCAAATCCAACATTTTCAT+GGG - Chr8:35633868-35633887 MsG0880044105.01.T01:CDS 30.0%
! TGGATTTTTAATGTTGGGTT+TGG - Chr8:35632098-35632117 MsG0880044105.01.T01:CDS 30.0%
! TGTTCAATGTTTGGAATTTG+AGG - Chr8:35632895-35632914 MsG0880044105.01.T01:intron 30.0%
! TTGTTTTCGTGCTTAATTTC+TGG - Chr8:35632764-35632783 MsG0880044105.01.T01:intron 30.0%
!! GATGAGTTTTATCTCAATCT+TGG - Chr8:35631913-35631932 MsG0880044105.01.T01:CDS 30.0%
!! TGTTGGGTTTGGTAATTTTA+AGG - Chr8:35632109-35632128 MsG0880044105.01.T01:CDS 30.0%
!! TTCTGGAAATCTTTTCTGTT+AGG - Chr8:35632781-35632800 MsG0880044105.01.T01:intron 30.0%
!! TTGAATCTTGATTTGGATTG+AGG + Chr8:35631748-35631767 None:intergenic 30.0%
!!! AGAAGTACAAGTTGATCTTT+TGG - Chr8:35633564-35633583 MsG0880044105.01.T01:intron 30.0%
!!! GAAGTACAAGTTGATCTTTT+GGG - Chr8:35633565-35633584 MsG0880044105.01.T01:intron 30.0%
AAATGATCTTGAAGTAGAGG+TGG + Chr8:35632644-35632663 None:intergenic 35.0%
AATGGAAATCTATGGGAATG+AGG + Chr8:35632618-35632637 None:intergenic 35.0%
AATTTGGACCAGTGAAAGTT+GGG + Chr8:35633305-35633324 None:intergenic 35.0%
AGAATGTGATATTGATCAGG+TGG - Chr8:35633660-35633679 MsG0880044105.01.T01:intron 35.0%
AGAGTGTATATAGATAGGGA+TGG - Chr8:35634122-35634141 MsG0880044105.01.T01:five_prime_UTR 35.0%
AGGTACTTCTCGGTATAAAT+TGG - Chr8:35633733-35633752 MsG0880044105.01.T01:intron 35.0%
AGTGGTGAAGTGAAATGAAA+AGG - Chr8:35633102-35633121 MsG0880044105.01.T01:intron 35.0%
ATACACTGGTCCAAACTAAA+GGG + Chr8:35632259-35632278 None:intergenic 35.0%
ATCAACTTACAACCAACTGT+AGG - Chr8:35632431-35632450 MsG0880044105.01.T01:intron 35.0%
ATGGAAATCTATGGGAATGA+GGG + Chr8:35632617-35632636 None:intergenic 35.0%
CAGAGAATGTGATATTGATC+AGG - Chr8:35633657-35633676 MsG0880044105.01.T01:intron 35.0%
CCAAAAACACTATTACTCTG+TGG + Chr8:35632499-35632518 None:intergenic 35.0%
CTTCTCGGTATAAATTGGAT+CGG - Chr8:35633738-35633757 MsG0880044105.01.T01:intron 35.0%
GAAAGATTGAGATTGCAAAG+AGG + Chr8:35631718-35631737 None:intergenic 35.0%
GAACATGAACTAGAATCCAA+AGG + Chr8:35633896-35633915 None:intergenic 35.0%
GAAGCTAAAGGTGAATTTCA+AGG - Chr8:35633713-35633732 MsG0880044105.01.T01:intron 35.0%
GAGAATGTGTGTGTAATTTG+AGG + Chr8:35631631-35631650 None:intergenic 35.0%
GTGGTGAAGTGAAATGAAAA+GGG - Chr8:35633103-35633122 MsG0880044105.01.T01:intron 35.0%
TAAACAGAATCAGCATCAGA+AGG - Chr8:35631891-35631910 MsG0880044105.01.T01:CDS 35.0%
TAATTTGGACCAGTGAAAGT+TGG + Chr8:35633306-35633325 None:intergenic 35.0%
! AATTCAGAATGGATTCATCG+TGG - Chr8:35632527-35632546 MsG0880044105.01.T01:intron 35.0%
! ATCAAAGGTCAGTTTTCAAC+TGG - Chr8:35633267-35633286 MsG0880044105.01.T01:intron 35.0%
! CAACTTGTGCAGTGAAATTT+TGG + Chr8:35631840-35631859 None:intergenic 35.0%
! CAGGGATGATGTAACATTTT+TGG - Chr8:35633514-35633533 MsG0880044105.01.T01:intron 35.0%
! CCAAATCCAACATTTTCATG+GGG - Chr8:35633869-35633888 MsG0880044105.01.T01:CDS 35.0%
! CCACAGAGTAATAGTGTTTT+TGG - Chr8:35632496-35632515 MsG0880044105.01.T01:intron 35.0%
! GTCCAAATCCAACATTTTCA+TGG - Chr8:35633867-35633886 MsG0880044105.01.T01:CDS 35.0%
! GTGAATTTCAAGGTACTTCT+CGG - Chr8:35633723-35633742 MsG0880044105.01.T01:intron 35.0%
!! AAACTCATTGCCACTTTGTA+TGG - Chr8:35633401-35633420 MsG0880044105.01.T01:intron 35.0%
!! AGAATTTTGTTTCGCGAGAT+TGG - Chr8:35633605-35633624 MsG0880044105.01.T01:intron 35.0%
!! TGGATTCTAGTTCATGTTCA+TGG - Chr8:35633897-35633916 MsG0880044105.01.T01:CDS 35.0%
AAAGGACCCCATGAAAATGT+TGG + Chr8:35633878-35633897 None:intergenic 40.0%
ACCAAATCCAAAACCGAAAC+CGG + Chr8:35633830-35633849 None:intergenic 40.0%
ACCGCACACTAGCAATATAT+GGG + Chr8:35633160-35633179 None:intergenic 40.0%
AGTTGGACCAAAACATACAC+TGG + Chr8:35632273-35632292 None:intergenic 40.0%
ATCTGGATTACTGCAGTTTC+TGG - Chr8:35633052-35633071 MsG0880044105.01.T01:intron 40.0%
ATTGATCAGGTGGAACTTGA+GGG - Chr8:35633670-35633689 MsG0880044105.01.T01:intron 40.0%
ATTTGGACCAGTGAAAGTTG+GGG + Chr8:35633304-35633323 None:intergenic 40.0%
CAAATGCCGATATAGTTAGG+GGG - Chr8:35632232-35632251 MsG0880044105.01.T01:CDS 40.0%
CATACACTGGTCCAAACTAA+AGG + Chr8:35632260-35632279 None:intergenic 40.0%
CCCCATGAAAATGTTGGATT+TGG + Chr8:35633872-35633891 None:intergenic 40.0%
CGGTATAAATTGGATCGGAA+CGG - Chr8:35633743-35633762 MsG0880044105.01.T01:intron 40.0%
GACCCTTTGAACACATTTAC+TGG - Chr8:35633536-35633555 MsG0880044105.01.T01:intron 40.0%
GCAAATGCCGATATAGTTAG+GGG - Chr8:35632231-35632250 MsG0880044105.01.T01:CDS 40.0%
GCAATATCAGGTCATTTAGC+TGG + Chr8:35632300-35632319 None:intergenic 40.0%
GCTAAATGACCTGATATTGC+AGG - Chr8:35632300-35632319 MsG0880044105.01.T01:intron 40.0%
GGATGAACGAAGATATTGAG+TGG + Chr8:35632725-35632744 None:intergenic 40.0%
GGCAAATGCCGATATAGTTA+GGG - Chr8:35632230-35632249 MsG0880044105.01.T01:CDS 40.0%
GTGGACGAATGGAAATCTAT+GGG + Chr8:35632625-35632644 None:intergenic 40.0%
TATTGATCAGGTGGAACTTG+AGG - Chr8:35633669-35633688 MsG0880044105.01.T01:intron 40.0%
TCAAGCAGTTAAGCACACAT+TGG - Chr8:35633931-35633950 MsG0880044105.01.T01:CDS 40.0%
TCCACAGAAGATGATGAAAC+CGG - Chr8:35633808-35633827 MsG0880044105.01.T01:CDS 40.0%
TGAACACAACCTGCAATATC+AGG + Chr8:35632312-35632331 None:intergenic 40.0%
TGATATTGCAGGTTGTGTTC+AGG - Chr8:35632311-35632330 MsG0880044105.01.T01:intron 40.0%
TGGAAATCTATGGGAATGAG+GGG + Chr8:35632616-35632635 None:intergenic 40.0%
TGGCAAATGCCGATATAGTT+AGG - Chr8:35632229-35632248 MsG0880044105.01.T01:CDS 40.0%
! AACATTTTCATGGGGTCCTT+TGG - Chr8:35633877-35633896 MsG0880044105.01.T01:CDS 40.0%
! AATTCACCTTTAGCTTCCCA+TGG + Chr8:35633710-35633729 None:intergenic 40.0%
! AGTTTTCAACTGGTCCAAGT+TGG - Chr8:35633277-35633296 MsG0880044105.01.T01:intron 40.0%
! GAAGATGATGAAACCGGTTT+CGG - Chr8:35633814-35633833 MsG0880044105.01.T01:CDS 40.0%
! GAAGGTGTACAACCTAACTA+TGG + Chr8:35633336-35633355 None:intergenic 40.0%
! GAATTTGAGGTTGTTGTTGC+TGG - Chr8:35632908-35632927 MsG0880044105.01.T01:intron 40.0%
! GCAGTGAAATTTTGGACTGA+AGG + Chr8:35631832-35631851 None:intergenic 40.0%
! GTCATTTAGCTGGTCTAAGT+TGG + Chr8:35632290-35632309 None:intergenic 40.0%
! GTTTGGACCAGTGTATGTTT+TGG - Chr8:35632263-35632282 MsG0880044105.01.T01:intron 40.0%
! TTTGTTTCGCGAGATTGGTT+TGG - Chr8:35633610-35633629 MsG0880044105.01.T01:intron 40.0%
!! AATGTTGGATTTGGACTAGC+AGG + Chr8:35633863-35633882 None:intergenic 40.0%
!! AGTTGATCTTTTGGGCATTG+AGG - Chr8:35633573-35633592 MsG0880044105.01.T01:intron 40.0%
!! ATGTTGGATTTGGACTAGCA+GGG + Chr8:35633862-35633881 None:intergenic 40.0%
!!! TTTTGGGCATTGAGGTTTCA+TGG - Chr8:35633581-35633600 MsG0880044105.01.T01:intron 40.0%
AAGGGACCCCCTAACTATAT+CGG + Chr8:35632241-35632260 None:intergenic 45.0%
AGACAGTTGTTACCACCAGA+TGG - Chr8:35633962-35633981 MsG0880044105.01.T01:CDS 45.0%
ATACACCACTTAACTGCGAG+TGG + Chr8:35633372-35633391 None:intergenic 45.0%
GAACATGTAGCCAAACCATC+TGG + Chr8:35633980-35633999 None:intergenic 45.0%
GACCGCACACTAGCAATATA+TGG + Chr8:35633161-35633180 None:intergenic 45.0%
GCCCATATATTGCTAGTGTG+CGG - Chr8:35633156-35633175 MsG0880044105.01.T01:intron 45.0%
GGTCAGTCTTTCACTAGGTA+AGG - Chr8:35633177-35633196 MsG0880044105.01.T01:intron 45.0%
GGTGGACGAATGGAAATCTA+TGG + Chr8:35632626-35632645 None:intergenic 45.0%
GTTGTTACCACCAGATGGTT+TGG - Chr8:35633967-35633986 MsG0880044105.01.T01:CDS 45.0%
TAGGTTGTACACCTTCACCT+AGG - Chr8:35633340-35633359 MsG0880044105.01.T01:intron 45.0%
TTACTCTGTGGGGAAGAAGT+CGG + Chr8:35632487-35632506 None:intergenic 45.0%
TTGAAGTAGAGGTGGACGAA+TGG + Chr8:35632636-35632655 None:intergenic 45.0%
TTGATCAGGTGGAACTTGAG+GGG - Chr8:35633671-35633690 MsG0880044105.01.T01:intron 45.0%
TTTCACTGCACAAGTTGCTC+AGG - Chr8:35631843-35631862 MsG0880044105.01.T01:CDS 45.0%
! ACCGGTTTCATCATCTTCTG+TGG + Chr8:35633812-35633831 None:intergenic 45.0%
! CAAAGGCATATCCTCACGAA+GGG + Chr8:35631953-35631972 None:intergenic 45.0%
! TCAAAGGCATATCCTCACGA+AGG + Chr8:35631954-35631973 None:intergenic 45.0%
!! GATGAAACCGGTTTCGGTTT+TGG - Chr8:35633820-35633839 MsG0880044105.01.T01:CDS 45.0%
!!! ACCGGTTTCGGTTTTGGATT+TGG - Chr8:35633826-35633845 MsG0880044105.01.T01:CDS 45.0%
!! ATAATATTAATTAATATAGA+CGG + Chr8:35633247-35633266 None:intergenic 5.0%
!! ATTAATTAATATTATATCAA+AGG - Chr8:35633252-35633271 MsG0880044105.01.T01:intron 5.0%
AGGGTTCCATGGGAAGCTAA+AGG - Chr8:35633701-35633720 MsG0880044105.01.T01:intron 50.0%
AGTGGTTCGAACCTAGGTGA+AGG + Chr8:35633354-35633373 None:intergenic 50.0%
AGTTGGACCCCAACTTTCAC+TGG - Chr8:35633294-35633313 MsG0880044105.01.T01:intron 50.0%
CATGTAGCCAAACCATCTGG+TGG + Chr8:35633977-35633996 None:intergenic 50.0%
GGAAGAAGTCGGGGTAGAAT+TGG + Chr8:35632476-35632495 None:intergenic 50.0%
GTGAAAGTTGGGGTCCAACT+TGG + Chr8:35633294-35633313 None:intergenic 50.0%
GTTAGGGGGTCCCTTTAGTT+TGG - Chr8:35632246-35632265 MsG0880044105.01.T01:CDS 50.0%
TACTCTGTGGGGAAGAAGTC+GGG + Chr8:35632486-35632505 None:intergenic 50.0%
TCGAACCACTCGCAGTTAAG+TGG - Chr8:35633364-35633383 MsG0880044105.01.T01:intron 50.0%
TCTGTAAGGCCTAGCTCAAC+TGG - Chr8:35632209-35632228 MsG0880044105.01.T01:CDS 50.0%
TGCTGTTAGAACCCTTCGTG+AGG - Chr8:35631939-35631958 MsG0880044105.01.T01:CDS 50.0%
TGTGCGGTCAGTCTTTCACT+AGG - Chr8:35633172-35633191 MsG0880044105.01.T01:intron 50.0%
TTAGCTTCCCATGGAACCCT+AGG + Chr8:35633701-35633720 None:intergenic 50.0%
ACTCTGTGGGGAAGAAGTCG+GGG + Chr8:35632485-35632504 None:intergenic 55.0%
ACTGCGAGTGGTTCGAACCT+AGG + Chr8:35633360-35633379 None:intergenic 55.0%
CGGCATTTGCCAGTTGAGCT+AGG + Chr8:35632221-35632240 None:intergenic 55.0%
! GAACTTGAGGGGTGTGCCTA+GGG - Chr8:35633682-35633701 MsG0880044105.01.T01:intron 55.0%
GGGTGTGCCTAGGGTTCCAT+GGG - Chr8:35633691-35633710 MsG0880044105.01.T01:intron 60.0%
! GGAACTTGAGGGGTGTGCCT+AGG - Chr8:35633681-35633700 MsG0880044105.01.T01:intron 60.0%
GGGGTGTGCCTAGGGTTCCA+TGG - Chr8:35633690-35633709 MsG0880044105.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 35631589 35634203 35631589 ID=MsG0880044105.01;Name=MsG0880044105.01
Chr8 mRNA 35631589 35634203 35631589 ID=MsG0880044105.01.T01;Parent=MsG0880044105.01;Name=MsG0880044105.01.T01;_AED=0.37;_eAED=0.37;_QI=117|1|1|1|1|1|2|200|262
Chr8 exon 35633785 35634203 35633785 ID=MsG0880044105.01.T01:exon:5277;Parent=MsG0880044105.01.T01
Chr8 exon 35631589 35632275 35631589 ID=MsG0880044105.01.T01:exon:5278;Parent=MsG0880044105.01.T01
Chr8 five_prime_UTR 35634087 35634203 35634087 ID=MsG0880044105.01.T01:five_prime_utr;Parent=MsG0880044105.01.T01
Chr8 CDS 35633785 35634086 35633785 ID=MsG0880044105.01.T01:cds;Parent=MsG0880044105.01.T01
Chr8 CDS 35631789 35632275 35631789 ID=MsG0880044105.01.T01:cds;Parent=MsG0880044105.01.T01
Chr8 three_prime_UTR 35631589 35631788 35631589 ID=MsG0880044105.01.T01:three_prime_utr;Parent=MsG0880044105.01.T01
Gene Sequence

>MsG0880044105.01.T01

ATGGCTTTTCCTCTTTGCAATCTCAATCTTTCTCTATTACCTCAATCCAAATCAAGATTCAAACATCAAACACTTTCTTCTTCAAAGCCCATTTCTCAATGTTCTTTATTCTTCACTTCTTCTCCTTCAGTCCAAAATTTCACTGCACAAGTTGCTCAGGTGAATTCACCATTAGCTACTCAAGATAAACAGAATCAGCATCAGAAGGATGAGTTTTATCTCAATCTTGGTGTTGCTGTTAGAACCCTTCGTGAGGATATGCCTTTGATCTTTGTTAAAGACCTTAATTATGATATTTATAGGGATGATGTAACATTTTTGGACCCTTTGAACACATTTACTGGTATTGAGAAGTACAAGTTGATCTTTTGGGCATTGAGGTTTCATGGTAGAATTTTGTTTCGCGAGATTGGTTTGGATGTATACAGAATATGGCAGCCTTCAGAGAATGTGATATTGATCAGGTGGAACTTGAGGGGTGTGCCTAGGGTTCCATGGGAAGCTAAAGGTGAATTTCAAGGTACTTCTCGGTATAAATTGGATCGGAACGGTAAGATTTATGAACACAAAGTTGATAATTTAGCATTCAACTTTCCACAGAAGATGATGAAACCGGTTTCGGTTTTGGATTTGGTTACTGCTTGCCCTGCTAGTCCAAATCCAACATTTTCATGGGGTCCTTTGGATTCTAGTTCATGTTCATGGATAGAATTATATCAAGCAGTTAAGCACACATTGGATGAAGAAAGACAGTTGTTACCACCAGATGGTTTGGCTACATGTTCATAG

Protein sequence

>MsG0880044105.01.T01

MAFPLCNLNLSLLPQSKSRFKHQTLSSSKPISQCSLFFTSSPSVQNFTAQVAQVNSPLATQDKQNQHQKDEFYLNLGVAVRTLREDMPLIFVKDLNYDIYRDDVTFLDPLNTFTGIEKYKLIFWALRFHGRILFREIGLDVYRIWQPSENVILIRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQKMMKPVSVLDLVTACPASPNPTFSWGPLDSSSCSWIELYQAVKHTLDEERQLLPPDGLATCS*