AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027098.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027098.01.T01 MTR_5g053450 99.267 273 2 0 4 276 303 575 0.0 555
MsG0580027098.01.T01 MTR_7g073530 44.379 169 85 2 1 166 310 472 1.63e-40 146
MsG0580027098.01.T01 MTR_8g005720 43.784 185 81 2 1 182 319 483 1.67e-37 139
MsG0580027098.01.T01 MTR_7g073560 41.905 105 52 2 65 166 21 119 4.74e-18 79.0
MsG0580027098.01.T01 MTR_7g073610 41.905 105 52 2 65 166 21 119 4.74e-18 79.0
MsG0580027098.01.T01 MTR_7g073540 28.916 166 75 4 1 166 27 149 5.31e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027098.01.T01 AT1G68830 83.516 273 45 0 4 276 290 562 8.38e-164 466
MsG0580027098.01.T01 AT5G01920 46.995 183 88 2 1 180 315 491 5.63e-43 153
MsG0580027098.01.T01 AT5G01920 46.995 183 88 2 1 180 315 491 5.63e-43 153

Find 63 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCCATACTCTCGTTTA+AGG 0.134787 5:+53044870 None:intergenic
CGAGCAACACAACAGGATTA+TGG 0.267381 5:-53045484 MsG0580027098.01.T01:CDS
GCCTTTGCCTTGCTTTATAT+CGG 0.279262 5:+53045599 None:intergenic
TTGTGCACCAGCCTTCTTCT+TGG 0.291467 5:+53044942 None:intergenic
ATTGACGGTTGAATTGTATA+AGG 0.298216 5:+53045755 None:intergenic
TACAACTTTCATTCCTCTCT+TGG 0.323203 5:+53044805 None:intergenic
CATTCCTAAAGAGTTTCTTT+TGG 0.331479 5:-53046533 MsG0580027098.01.T01:CDS
GGATCCAAAAGAAACTCTTT+AGG 0.332998 5:+53046529 None:intergenic
TGTGCACCAGCCTTCTTCTT+GGG 0.348907 5:+53044943 None:intergenic
CAAGTGGATTATTCAGCTTA+TGG 0.349059 5:-53045452 MsG0580027098.01.T01:CDS
CTGCACTCTCTCCAGTCTTA+TGG 0.363671 5:-53046281 MsG0580027098.01.T01:CDS
ATTCAGCTTATGGCAAAATC+AGG 0.382255 5:-53045442 MsG0580027098.01.T01:CDS
ACATTCAAAATAATTGATCT+TGG 0.382791 5:-53046589 MsG0580027098.01.T01:CDS
ATTCACTGAAGCTCAATTAC+AGG 0.387793 5:-53045401 MsG0580027098.01.T01:CDS
TTGGATTTAGATGGCGGAAT+AGG 0.392942 5:-53045646 MsG0580027098.01.T01:CDS
TTTGAGCTGTTGGATTTAGA+TGG 0.405059 5:-53045655 MsG0580027098.01.T01:CDS
AAGCCTTCTTTGTCAAAGTA+AGG 0.405199 5:+53045550 None:intergenic
GTTGCACGTCAAAATATTAC+AGG 0.416786 5:+53044613 None:intergenic
CTTTGACAAAGAAGGCTTGT+TGG 0.417513 5:-53045545 MsG0580027098.01.T01:CDS
CATCCTTACTTTGACAAAGA+AGG 0.421240 5:-53045553 MsG0580027098.01.T01:CDS
ACAACTTTCATTCCTCTCTT+GGG 0.423424 5:+53044806 None:intergenic
GGAGAGAGTGCAGTTGCAAC+TGG 0.425506 5:+53046291 None:intergenic
TAGGAGAGGCTTTGAGCTGT+TGG 0.438205 5:-53045665 MsG0580027098.01.T01:CDS
AGTCACACCTCTTTAATTGA+CGG 0.447260 5:+53045740 None:intergenic
ATTTAGATGGCGGAATAGGA+TGG 0.466045 5:-53045642 MsG0580027098.01.T01:CDS
CTATTATCAGAGCGTAAGCC+AGG 0.468233 5:+53045778 None:intergenic
GGCAAAATCAGGAACAGAAA+AGG 0.483650 5:-53045431 MsG0580027098.01.T01:CDS
AAAGCATTTGGTGGAGGAGA+TGG 0.488211 5:-53044831 MsG0580027098.01.T01:CDS
CTCGATGTGGCGCTGAACTT+AGG 0.499449 5:-53045684 MsG0580027098.01.T01:CDS
GGAAATTGTGCCCAAGAAGA+AGG 0.504841 5:-53044953 MsG0580027098.01.T01:CDS
TGGTCTAATATTCCTCCAAA+TGG 0.512216 5:-53046118 MsG0580027098.01.T01:intron
AGTTTAACCTGCCATAAGAC+TGG 0.523445 5:+53046270 None:intergenic
GTGCTCATAATGTACTGCTC+TGG 0.529003 5:+53046339 None:intergenic
AATTCAACCGTCAATTAAAG+AGG 0.535042 5:-53045747 MsG0580027098.01.T01:CDS
CTGTAGATATCAAATCTGTC+AGG 0.543319 5:+53046144 None:intergenic
CTTCAGCTCTTAAAGTGCAA+AGG 0.564633 5:-53044906 MsG0580027098.01.T01:CDS
ACTCTCTCCAGTCTTATGGC+AGG 0.570820 5:-53046277 MsG0580027098.01.T01:intron
TGTACGAGACCCTGAGACCA+TGG 0.573086 5:+53046609 None:intergenic
ATTTGATACTCACCATTTGG+AGG 0.574767 5:+53046106 None:intergenic
ACTGGAGCTGAGGGTGCAGA+TGG 0.578510 5:+53046309 None:intergenic
AGATTTGATATCTACAGTAC+TGG 0.579644 5:-53046138 MsG0580027098.01.T01:CDS
ATTGTGCCCAAGAAGAAGGC+TGG 0.580227 5:-53044949 MsG0580027098.01.T01:CDS
TTTAGATGGCGGAATAGGAT+GGG 0.582248 5:-53045641 MsG0580027098.01.T01:CDS
AAAACAGGAAAAGCATTTGG+TGG 0.582619 5:-53044840 MsG0580027098.01.T01:CDS
GAGCTGTTGGATTTAGATGG+CGG 0.583483 5:-53045652 MsG0580027098.01.T01:CDS
ACAGGAAAAGCATTTGGTGG+AGG 0.584401 5:-53044837 MsG0580027098.01.T01:CDS
GTGACTATGACTTGGTTGCA+TGG 0.590726 5:-53045723 MsG0580027098.01.T01:CDS
TGCAGTTGCAACTGGAGCTG+AGG 0.594722 5:+53046299 None:intergenic
CATAAGCTGAATAATCCACT+TGG 0.599152 5:+53045453 None:intergenic
AAAATCAGGAACAGAAAAGG+AGG 0.609977 5:-53045428 MsG0580027098.01.T01:CDS
GCTGCTACAGACTTGCGAGT+TGG 0.612827 5:-53046565 MsG0580027098.01.T01:CDS
CAATGGTCCGATATAAAGCA+AGG 0.622058 5:-53045606 MsG0580027098.01.T01:CDS
TCCGATATAAAGCAAGGCAA+AGG 0.623569 5:-53045600 MsG0580027098.01.T01:CDS
TATCTATCATGCAAAATCTG+AGG 0.626984 5:-53045519 MsG0580027098.01.T01:CDS
GCAGTTGCAACTGGAGCTGA+GGG 0.634177 5:+53046300 None:intergenic
TCAGGAACAGAAAAGGAGGG+TGG 0.634221 5:-53045424 MsG0580027098.01.T01:CDS
GAGGAGATGGATCCCAAGAG+AGG 0.662184 5:-53044818 MsG0580027098.01.T01:CDS
AAAGAGGTGTGACTATGACT+TGG 0.672074 5:-53045731 MsG0580027098.01.T01:CDS
AAAACTGTGGAGCCTCGATG+TGG 0.677269 5:-53045697 MsG0580027098.01.T01:CDS
TGTGGCGCTGAACTTAGGAG+AGG 0.694905 5:-53045679 MsG0580027098.01.T01:CDS
AAATCAGGAACAGAAAAGGA+GGG 0.696429 5:-53045427 MsG0580027098.01.T01:CDS
ATTATGGAGAAGCTGCCAAG+TGG 0.696799 5:-53045468 MsG0580027098.01.T01:CDS
CTAAGTTCAGCGCCACATCG+AGG 0.705406 5:+53045685 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATTGAAAAGAAAAA+GGG + Chr5:53046407-53046426 None:intergenic 10.0%
!!! AATCAAAAGAATTTTTTTAT+CGG - Chr5:53046017-53046036 MsG0580027098.01.T01:intron 10.0%
!!! TTTTATAGTTAAAATGATTA+TGG - Chr5:53045223-53045242 MsG0580027098.01.T01:intron 10.0%
!! AAAATATTGAAAAGAAAAAG+GGG + Chr5:53046406-53046425 None:intergenic 15.0%
!! CAAAAATATTGAAAAGAAAA+AGG + Chr5:53046408-53046427 None:intergenic 15.0%
!!! AAATAAACAAGTTTTGATTT+TGG + Chr5:53046045-53046064 None:intergenic 15.0%
!!! AAATAAGCAAATTTTCATTT+TGG + Chr5:53046123-53046142 None:intergenic 15.0%
!!! ATCAAAAGAATTTTTTTATC+GGG - Chr5:53046018-53046037 MsG0580027098.01.T01:intron 15.0%
!!! CAATTTTGATCATTTTATAT+AGG - Chr5:53045368-53045387 MsG0580027098.01.T01:intron 15.0%
!! AAAAGGGTTAAATATGTTTA+TGG + Chr5:53046075-53046094 None:intergenic 20.0%
!! ACATTCAAAATAATTGATCT+TGG - Chr5:53044585-53044604 MsG0580027098.01.T01:three_prime_UTR 20.0%
!! TGATTAATAGACACATTATT+AGG - Chr5:53044730-53044749 MsG0580027098.01.T01:three_prime_UTR 20.0%
!!! ACTGAAATTATTTTTTTTGC+TGG - Chr5:53045818-53045837 MsG0580027098.01.T01:intron 20.0%
!!! ATTTACGTAACATTTTTTGA+AGG - Chr5:53046587-53046606 MsG0580027098.01.T01:CDS 20.0%
!!! TCAAAACTTGTTTATTTTAG+TGG - Chr5:53046048-53046067 MsG0580027098.01.T01:intron 20.0%
! AAATCATTTAAACAATGGCA+AGG - Chr5:53045298-53045317 MsG0580027098.01.T01:intron 25.0%
! AACCAATTATATGATCAAAC+TGG - Chr5:53045329-53045348 MsG0580027098.01.T01:intron 25.0%
! ATGATGACTATGACAATAAA+AGG + Chr5:53046092-53046111 None:intergenic 25.0%
! ATTATTTGATACTCACCATT+TGG + Chr5:53045074-53045093 None:intergenic 25.0%
! CAAAAAATGTTACGTAAATG+TGG + Chr5:53046586-53046605 None:intergenic 25.0%
! CATGGAAATCATTTAAACAA+TGG - Chr5:53045293-53045312 MsG0580027098.01.T01:intron 25.0%
! TACCAGTTTGATCATATAAT+TGG + Chr5:53045334-53045353 None:intergenic 25.0%
! TGATGACTATGACAATAAAA+GGG + Chr5:53046091-53046110 None:intergenic 25.0%
!! ACATGTGCTATTATTAATGA+TGG + Chr5:53044945-53044964 None:intergenic 25.0%
AAAAACCTTAAACGAGAGTA+TGG - Chr5:53046299-53046318 MsG0580027098.01.T01:CDS 30.0%
AAAAGGGTTGAATATGTTTG+TGG + Chr5:53046153-53046172 None:intergenic 30.0%
AACAACTATGAGGGTAAAAA+GGG + Chr5:53046169-53046188 None:intergenic 30.0%
AATTCAACCGTCAATTAAAG+AGG - Chr5:53045427-53045446 MsG0580027098.01.T01:CDS 30.0%
AGATTTGATATCTACAGTAC+TGG - Chr5:53045036-53045055 MsG0580027098.01.T01:intron 30.0%
ATTGACGGTTGAATTGTATA+AGG + Chr5:53045422-53045441 None:intergenic 30.0%
TATCTATCATGCAAAATCTG+AGG - Chr5:53045655-53045674 MsG0580027098.01.T01:CDS 30.0%
TTGTCATAGTCATCATCTTA+CGG - Chr5:53046096-53046115 MsG0580027098.01.T01:intron 30.0%
! CATTCCTAAAGAGTTTCTTT+TGG - Chr5:53044641-53044660 MsG0580027098.01.T01:three_prime_UTR 30.0%
! CATTTTATATAGGCATTTCC+TGG - Chr5:53045378-53045397 MsG0580027098.01.T01:intron 30.0%
! GTGCTATTATTAATGATGGA+TGG + Chr5:53044941-53044960 None:intergenic 30.0%
!! AGCAAGAAATGATGGATAAA+TGG + Chr5:53046196-53046215 None:intergenic 30.0%
AAAATCAGGAACAGAAAAGG+AGG - Chr5:53045746-53045765 MsG0580027098.01.T01:CDS 35.0%
AAAGTCATCTGAAGATACCT+TGG + Chr5:53044669-53044688 None:intergenic 35.0%
AAAGTTGTTACGTGACTGAA+AGG + Chr5:53045959-53045978 None:intergenic 35.0%
AAATCAGGAACAGAAAAGGA+GGG - Chr5:53045747-53045766 MsG0580027098.01.T01:CDS 35.0%
AAGCCTTCTTTGTCAAAGTA+AGG + Chr5:53045627-53045646 None:intergenic 35.0%
AAGGATTGTACACAACATGA+GGG + Chr5:53044796-53044815 None:intergenic 35.0%
ACAACTTTCATTCCTCTCTT+GGG + Chr5:53046371-53046390 None:intergenic 35.0%
AGTCACACCTCTTTAATTGA+CGG + Chr5:53045437-53045456 None:intergenic 35.0%
ATTCACTGAAGCTCAATTAC+AGG - Chr5:53045773-53045792 MsG0580027098.01.T01:CDS 35.0%
ATTCAGCTTATGGCAAAATC+AGG - Chr5:53045732-53045751 MsG0580027098.01.T01:CDS 35.0%
ATTTGATACTCACCATTTGG+AGG + Chr5:53045071-53045090 None:intergenic 35.0%
CAACAACTATGAGGGTAAAA+AGG + Chr5:53046170-53046189 None:intergenic 35.0%
CATAAGCTGAATAATCCACT+TGG + Chr5:53045724-53045743 None:intergenic 35.0%
CATCCTTACTTTGACAAAGA+AGG - Chr5:53045621-53045640 MsG0580027098.01.T01:CDS 35.0%
CTGTAGATATCAAATCTGTC+AGG + Chr5:53045033-53045052 None:intergenic 35.0%
CTTTCTAACTTGAGTCATCA+AGG + Chr5:53044758-53044777 None:intergenic 35.0%
GGATCCAAAAGAAACTCTTT+AGG + Chr5:53044648-53044667 None:intergenic 35.0%
GTATCTAAAGAAATGACACG+TGG + Chr5:53045859-53045878 None:intergenic 35.0%
GTTGCACGTCAAAATATTAC+AGG + Chr5:53046564-53046583 None:intergenic 35.0%
TAAACACAAACTTCGATCAG+TGG + Chr5:53044701-53044720 None:intergenic 35.0%
TACAACTTTCATTCCTCTCT+TGG + Chr5:53046372-53046391 None:intergenic 35.0%
TCCATCATTTCTTGCTTTGT+AGG - Chr5:53046200-53046219 MsG0580027098.01.T01:intron 35.0%
TCCTACAAAGCAAGAAATGA+TGG + Chr5:53046204-53046223 None:intergenic 35.0%
TGGTCTAATATTCCTCCAAA+TGG - Chr5:53045056-53045075 MsG0580027098.01.T01:intron 35.0%
TGTCATAGTCATCATCTTAC+GGG - Chr5:53046097-53046116 MsG0580027098.01.T01:intron 35.0%
TTTGAGCTGTTGGATTTAGA+TGG - Chr5:53045519-53045538 MsG0580027098.01.T01:CDS 35.0%
! AAATGGTGTCAACAACTATG+AGG + Chr5:53046179-53046198 None:intergenic 35.0%
! AAGAGTTTCTTTTGGATCCA+AGG - Chr5:53044649-53044668 MsG0580027098.01.T01:three_prime_UTR 35.0%
! AATGGTGTCAACAACTATGA+GGG + Chr5:53046178-53046197 None:intergenic 35.0%
! ATTTTCATCCCTCCGAAAAT+AGG + Chr5:53046000-53046019 None:intergenic 35.0%
! TTTTCATCCCTCCGAAAATA+GGG + Chr5:53045999-53046018 None:intergenic 35.0%
!! AAAACAGGAAAAGCATTTGG+TGG - Chr5:53046334-53046353 MsG0580027098.01.T01:CDS 35.0%
!! CAAGTGGATTATTCAGCTTA+TGG - Chr5:53045722-53045741 MsG0580027098.01.T01:CDS 35.0%
!! GCAAAAACAGGAAAAGCATT+TGG - Chr5:53046331-53046350 MsG0580027098.01.T01:CDS 35.0%
AACAGCCTCGTGTAAAAAAC+AGG + Chr5:53045916-53045935 None:intergenic 40.0%
AGTTTAACCTGCCATAAGAC+TGG + Chr5:53044907-53044926 None:intergenic 40.0%
CAATGGTCCGATATAAAGCA+AGG - Chr5:53045568-53045587 MsG0580027098.01.T01:CDS 40.0%
CCTCGTGTAAAAAACAGGTA+AGG + Chr5:53045911-53045930 None:intergenic 40.0%
CTCATCCATACTCTCGTTTA+AGG + Chr5:53046307-53046326 None:intergenic 40.0%
CTTCAGCTCTTAAAGTGCAA+AGG - Chr5:53046268-53046287 MsG0580027098.01.T01:intron 40.0%
CTTTGACAAAGAAGGCTTGT+TGG - Chr5:53045629-53045648 MsG0580027098.01.T01:CDS 40.0%
GAAGGATTGTACACAACATG+AGG + Chr5:53044797-53044816 None:intergenic 40.0%
GCCTTTGCCTTGCTTTATAT+CGG + Chr5:53045578-53045597 None:intergenic 40.0%
GGCAAAATCAGGAACAGAAA+AGG - Chr5:53045743-53045762 MsG0580027098.01.T01:CDS 40.0%
TCCGATATAAAGCAAGGCAA+AGG - Chr5:53045574-53045593 MsG0580027098.01.T01:CDS 40.0%
! AAAGAGGTGTGACTATGACT+TGG - Chr5:53045443-53045462 MsG0580027098.01.T01:CDS 40.0%
! ATGGGAACTTTTGACGTCAA+TGG - Chr5:53045551-53045570 MsG0580027098.01.T01:CDS 40.0%
! CAGTCTTGTATTTGTCAACG+AGG + Chr5:53045192-53045211 None:intergenic 40.0%
! TGCAGCATATCTGAAATGGA+AGG + Chr5:53044815-53044834 None:intergenic 40.0%
!! ATTTAGATGGCGGAATAGGA+TGG - Chr5:53045532-53045551 MsG0580027098.01.T01:CDS 40.0%
!! TTGGATTTAGATGGCGGAAT+AGG - Chr5:53045528-53045547 MsG0580027098.01.T01:CDS 40.0%
!! TTTAGATGGCGGAATAGGAT+GGG - Chr5:53045533-53045552 MsG0580027098.01.T01:CDS 40.0%
!! TTTTTACACGAGGCTGTTTC+CGG - Chr5:53045918-53045937 MsG0580027098.01.T01:intron 40.0%
!!! CCTTACCTGTTTTTTACACG+AGG - Chr5:53045908-53045927 MsG0580027098.01.T01:intron 40.0%
!!! GTTTTTTCGAGCAACACAAC+AGG - Chr5:53045683-53045702 MsG0580027098.01.T01:CDS 40.0%
ATTATGGAGAAGCTGCCAAG+TGG - Chr5:53045706-53045725 MsG0580027098.01.T01:CDS 45.0%
CAAACTTCGATCAGTGGAGT+AGG + Chr5:53044695-53044714 None:intergenic 45.0%
CGAGCAACACAACAGGATTA+TGG - Chr5:53045690-53045709 MsG0580027098.01.T01:CDS 45.0%
CTATTATCAGAGCGTAAGCC+AGG + Chr5:53045399-53045418 None:intergenic 45.0%
CTGGTGCAGCATATCTGAAA+TGG + Chr5:53044819-53044838 None:intergenic 45.0%
GAGCTGTTGGATTTAGATGG+CGG - Chr5:53045522-53045541 MsG0580027098.01.T01:CDS 45.0%
GGAAATTGTGCCCAAGAAGA+AGG - Chr5:53046221-53046240 MsG0580027098.01.T01:intron 45.0%
GGTTGCATGGAGAAAAACTG+TGG - Chr5:53045464-53045483 MsG0580027098.01.T01:CDS 45.0%
GTGCTCATAATGTACTGCTC+TGG + Chr5:53044838-53044857 None:intergenic 45.0%
GTTACGTGACATCTCTCAAC+AGG + Chr5:53045886-53045905 None:intergenic 45.0%
TGGATGAGCTCAGCAAAAAC+AGG - Chr5:53046319-53046338 MsG0580027098.01.T01:CDS 45.0%
TTACGTGACTGAAAGGTCAC+AGG + Chr5:53045952-53045971 None:intergenic 45.0%
! AAAGCATTTGGTGGAGGAGA+TGG - Chr5:53046343-53046362 MsG0580027098.01.T01:CDS 45.0%
!! ACAGGAAAAGCATTTGGTGG+AGG - Chr5:53046337-53046356 MsG0580027098.01.T01:CDS 45.0%
!! GTGACTATGACTTGGTTGCA+TGG - Chr5:53045451-53045470 MsG0580027098.01.T01:CDS 45.0%
!! TTTTACACGAGGCTGTTTCC+GGG - Chr5:53045919-53045938 MsG0580027098.01.T01:intron 45.0%
!!! AATTTTATTTTTTTTATTCA+TGG - Chr5:53045275-53045294 MsG0580027098.01.T01:intron 5.0%
AAAACTGTGGAGCCTCGATG+TGG - Chr5:53045477-53045496 MsG0580027098.01.T01:CDS 50.0%
AAGGTCACAGGTTCAAGTCC+CGG + Chr5:53045940-53045959 None:intergenic 50.0%
ACAACTTTACCGTTGCGCCA+AGG - Chr5:53045971-53045990 MsG0580027098.01.T01:intron 50.0%
ATTGTGCCCAAGAAGAAGGC+TGG - Chr5:53046225-53046244 MsG0580027098.01.T01:intron 50.0%
CTGCACTCTCTCCAGTCTTA+TGG - Chr5:53044893-53044912 MsG0580027098.01.T01:CDS 50.0%
TCAGGAACAGAAAAGGAGGG+TGG - Chr5:53045750-53045769 MsG0580027098.01.T01:CDS 50.0%
TGTGCACCAGCCTTCTTCTT+GGG + Chr5:53046234-53046253 None:intergenic 50.0%
TTGTGCACCAGCCTTCTTCT+TGG + Chr5:53046235-53046254 None:intergenic 50.0%
TTTGCTGGACACTCGACAGA+TGG - Chr5:53045833-53045852 MsG0580027098.01.T01:intron 50.0%
! ACTCTCTCCAGTCTTATGGC+AGG - Chr5:53044897-53044916 MsG0580027098.01.T01:CDS 50.0%
! CAAGGCTCCCTATTTTCGGA+GGG - Chr5:53045989-53046008 MsG0580027098.01.T01:intron 50.0%
!! TAGGAGAGGCTTTGAGCTGT+TGG - Chr5:53045509-53045528 MsG0580027098.01.T01:CDS 50.0%
AATAGGGAGCCTTGGCGCAA+CGG + Chr5:53045983-53046002 None:intergenic 55.0%
CCTCCGAAAATAGGGAGCCT+TGG + Chr5:53045991-53046010 None:intergenic 55.0%
CTAAGTTCAGCGCCACATCG+AGG + Chr5:53045492-53045511 None:intergenic 55.0%
GAGGAGATGGATCCCAAGAG+AGG - Chr5:53046356-53046375 MsG0580027098.01.T01:intron 55.0%
GCAGTTGCAACTGGAGCTGA+GGG + Chr5:53044877-53044896 None:intergenic 55.0%
GCTGCTACAGACTTGCGAGT+TGG - Chr5:53044609-53044628 MsG0580027098.01.T01:three_prime_UTR 55.0%
TGCAGTTGCAACTGGAGCTG+AGG + Chr5:53044878-53044897 None:intergenic 55.0%
! CCAAGGCTCCCTATTTTCGG+AGG - Chr5:53045988-53046007 MsG0580027098.01.T01:intron 55.0%
! CTCGATGTGGCGCTGAACTT+AGG - Chr5:53045490-53045509 MsG0580027098.01.T01:CDS 55.0%
! GCGCCAAGGCTCCCTATTTT+CGG - Chr5:53045985-53046004 MsG0580027098.01.T01:intron 55.0%
! GGAGAGAGTGCAGTTGCAAC+TGG + Chr5:53044886-53044905 None:intergenic 55.0%
! TGTGGCGCTGAACTTAGGAG+AGG - Chr5:53045495-53045514 MsG0580027098.01.T01:CDS 55.0%
! ACTGGAGCTGAGGGTGCAGA+TGG + Chr5:53044868-53044887 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 53044567 53046629 53044567 ID=MsG0580027098.01;Name=MsG0580027098.01
Chr5 mRNA 53044567 53046629 53044567 ID=MsG0580027098.01.T01;Parent=MsG0580027098.01;Name=MsG0580027098.01.T01;_AED=0.39;_eAED=0.39;_QI=0|1|0.8|1|0.75|0.8|5|246|276
Chr5 exon 53044567 53044974 53044567 ID=MsG0580027098.01.T01:exon:17472;Parent=MsG0580027098.01.T01
Chr5 exon 53045393 53045806 53045393 ID=MsG0580027098.01.T01:exon:17471;Parent=MsG0580027098.01.T01
Chr5 exon 53046119 53046175 53046119 ID=MsG0580027098.01.T01:exon:17470;Parent=MsG0580027098.01.T01
Chr5 exon 53046278 53046371 53046278 ID=MsG0580027098.01.T01:exon:17469;Parent=MsG0580027098.01.T01
Chr5 exon 53046526 53046629 53046526 ID=MsG0580027098.01.T01:exon:17468;Parent=MsG0580027098.01.T01
Chr5 CDS 53046526 53046629 53046526 ID=MsG0580027098.01.T01:cds;Parent=MsG0580027098.01.T01
Chr5 CDS 53046278 53046371 53046278 ID=MsG0580027098.01.T01:cds;Parent=MsG0580027098.01.T01
Chr5 CDS 53046119 53046175 53046119 ID=MsG0580027098.01.T01:cds;Parent=MsG0580027098.01.T01
Chr5 CDS 53045393 53045806 53045393 ID=MsG0580027098.01.T01:cds;Parent=MsG0580027098.01.T01
Chr5 CDS 53044813 53044974 53044813 ID=MsG0580027098.01.T01:cds;Parent=MsG0580027098.01.T01
Chr5 three_prime_UTR 53044567 53044812 53044567 ID=MsG0580027098.01.T01:three_prime_utr;Parent=MsG0580027098.01.T01
Gene Sequence

>MsG0580027098.01.T01

ATGGTCTCAGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCTGCTACAGACTTGCGAGTTGGCATTAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAGTACATTATGAGCACACAAACTCCATCTGCACCCTCAGCTCCAGTTGCAACTGCACTCTCTCCAGTCTTATGGCAGTTAAATCTTCCTGACAGATTTGATATCTACAGTACTGGTCTAATATTCCTCCAAATGGCATTTCCTGGCTTACGCTCTGATAATAGCCTTATACAATTCAACCGTCAATTAAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTGGAGCCTCGATGTGGCGCTGAACTTAGGAGAGGCTTTGAGCTGTTGGATTTAGATGGCGGAATAGGATGGGAACTTTTGACGTCAATGGTCCGATATAAAGCAAGGCAAAGGCTGAGTGCTAAAGCAGCGTTAGCTCATCCTTACTTTGACAAAGAAGGCTTGTTGGCGTTATCTATCATGCAAAATCTGAGGCTTAAGTTTTTTCGAGCAACACAACAGGATTATGGAGAAGCTGCCAAGTGGATTATTCAGCTTATGGCAAAATCAGGAACAGAAAAGGAGGGTGGATTCACTGAAGCTCAATTACAGGAACTTAGAGAAATTGTGCCCAAGAAGAAGGCTGGTGCACAAAGAAATGCTCTAGCTTCAGCTCTTAAAGTGCAAAGGAAAATTATAAAAACCTTAAACGAGAGTATGGATGAGCTCAGCAAAAACAGGAAAAGCATTTGGTGGAGGAGATGGATCCCAAGAGAGGAATGA

Protein sequence

>MsG0580027098.01.T01

MVSGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPGLRSDNSLIQFNRQLKRCDYDLVAWRKTVEPRCGAELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGLLALSIMQNLRLKFFRATQQDYGEAAKWIIQLMAKSGTEKEGGFTEAQLQELREIVPKKKAGAQRNALASALKVQRKIIKTLNESMDELSKNRKSIWWRRWIPREE*