AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009863.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009863.01.T01 MTR_2g072470 97.708 349 6 1 27 373 73 421 0.0 686
MsG0280009863.01.T01 MTR_4g095055 40.575 313 172 3 55 353 79 391 1.41e-76 242
MsG0280009863.01.T01 MTR_4g095055 40.724 221 117 3 55 261 79 299 1.71e-45 163
MsG0280009863.01.T01 MTR_4g095055 39.583 96 58 0 258 353 369 464 3.22e-17 83.2
MsG0280009863.01.T01 MTR_8g078070 35.887 248 141 6 65 300 92 333 6.65e-34 129
MsG0280009863.01.T01 MTR_5g019460 35.827 254 145 6 65 306 91 338 1.06e-32 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009863.01.T01 AT1G17050 72.951 366 94 1 7 372 56 416 0.0 544
MsG0280009863.01.T01 AT1G78510 73.569 367 95 2 7 372 1 366 0.0 538
MsG0280009863.01.T01 AT1G78510 78.443 334 72 0 39 372 72 405 0.0 537
MsG0280009863.01.T01 AT2G34630 39.490 314 177 3 55 355 85 398 2.97e-73 234
MsG0280009863.01.T01 AT2G34630 39.731 297 166 3 72 355 1 297 4.42e-70 223
MsG0280009863.01.T01 AT4G36810 40.000 255 129 9 63 300 85 332 5.46e-37 137
MsG0280009863.01.T01 AT2G18620 38.722 266 142 9 63 314 64 322 5.83e-35 131
MsG0280009863.01.T01 AT2G18640 36.800 250 140 7 63 300 90 333 1.63e-33 128
MsG0280009863.01.T01 AT3G14510 38.075 239 128 6 90 314 27 259 3.27e-32 122
MsG0280009863.01.T01 AT3G20160 34.646 254 143 8 63 300 59 305 2.49e-30 119
MsG0280009863.01.T01 AT3G32040 34.831 267 153 7 63 314 75 335 1.46e-27 112
MsG0280009863.01.T01 AT2G23800 34.661 251 144 9 63 300 94 337 2.70e-27 111
MsG0280009863.01.T01 AT3G29430 36.820 239 131 6 90 314 100 332 2.96e-26 108
MsG0280009863.01.T01 AT3G14550 34.831 267 153 8 63 314 75 335 5.19e-26 107
MsG0280009863.01.T01 AT3G14550 34.831 267 153 8 63 314 75 335 5.19e-26 107
MsG0280009863.01.T01 AT3G14550 34.831 267 153 8 63 314 75 335 5.19e-26 107
MsG0280009863.01.T01 AT3G14530 36.820 239 131 7 90 314 103 335 9.06e-26 107
MsG0280009863.01.T01 AT3G20160 32.389 247 130 8 63 300 59 277 2.58e-25 104
MsG0280009863.01.T01 AT1G49530 31.111 225 133 6 91 299 78 296 2.56e-21 94.0

Find 70 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACCTATTTGGTGAAAT+AGG 0.152420 2:+59522929 None:intergenic
ACAACCTATTTGGTGAAATA+GGG 0.248193 2:+59522930 None:intergenic
ACTACTTCAAACAACCTATT+TGG 0.252967 2:+59522920 None:intergenic
GAGACCGGCTCTTGTGTTCT+TGG 0.257479 2:-59522352 MsG0280009863.01.T01:CDS
TTCTCCAACGCGAAAATTAC+AGG 0.258160 2:+59520867 None:intergenic
CCAGATCCAAGAAAATAAAA+TGG 0.265102 2:+59520405 None:intergenic
TTGATTGCTGCCAGCGTAAA+AGG 0.270096 2:-59521062 MsG0280009863.01.T01:CDS
GAAACTGTTCATCAAATGTT+TGG 0.338601 2:-59521594 MsG0280009863.01.T01:CDS
CCAAGTTGTCGACGACATAT+TGG 0.347498 2:-59520961 MsG0280009863.01.T01:CDS
GCACAAAGGGATTGTGTTGA+TGG 0.358009 2:+59520537 None:intergenic
CAACCCCTATTTCACCAAAT+AGG 0.381053 2:-59522934 MsG0280009863.01.T01:CDS
TCAATGATATCCCTCAATTT+CGG 0.393056 2:+59520840 None:intergenic
TTTGGTGAAATAGGGGTTGC+TGG 0.395241 2:+59522938 None:intergenic
CAGATCCAAGAAAATAAAAT+GGG 0.409484 2:+59520406 None:intergenic
CTCTTGTGTTCTTGGTGTCA+AGG 0.413478 2:-59522344 MsG0280009863.01.T01:CDS
AGGAGCTGTCAGGTTACCTT+TGG 0.418601 2:+59520887 None:intergenic
CCAATATGTCGTCGACAACT+TGG 0.427937 2:+59520961 None:intergenic
GAGTCTGAATTTAGCGAGAT+TGG 0.432083 2:-59520819 MsG0280009863.01.T01:CDS
ACTGAGAAAATGTTCGAATA+CGG 0.446574 2:-59521005 MsG0280009863.01.T01:CDS
GCAATTAAAGACCTTGCAAA+AGG 0.452757 2:-59522980 MsG0280009863.01.T01:CDS
TCAGCTGCAGATATTAAAAC+TGG 0.453325 2:+59522405 None:intergenic
ATCAAGTTGGTTAAGAGTTG+TGG 0.459670 2:-59520780 MsG0280009863.01.T01:CDS
AGCTTGCTTTATTTCTCCAC+TGG 0.468481 2:+59521154 None:intergenic
AGGGCGACCGCAGAGCTATA+TGG 0.468640 2:-59522324 MsG0280009863.01.T01:CDS
TCAAGTTGGTTAAGAGTTGT+GGG 0.479565 2:-59520779 MsG0280009863.01.T01:CDS
TCTTGTGTTCTTGGTGTCAA+GGG 0.480305 2:-59522343 MsG0280009863.01.T01:CDS
TGTGCGATGTAATTCATAAA+CGG 0.490853 2:+59523287 None:intergenic
TTGGCGAGGTCCGTGCATGC+AGG 0.492317 2:+59520906 None:intergenic
ACAAGAGTGGCAGTGCTGGC+TGG 0.494391 2:-59521570 MsG0280009863.01.T01:CDS
TTTCTTGGATCTGGTTGTAA+GGG 0.496646 2:-59520396 MsG0280009863.01.T01:three_prime_UTR
ACGCAATCGGCAGAGCAACT+TGG 0.497280 2:-59520933 MsG0280009863.01.T01:CDS
CGAAAATTACAGGAGCTGTC+AGG 0.497944 2:+59520877 None:intergenic
TTCGAATACGGGAAGAATCT+CGG 0.498347 2:-59520993 MsG0280009863.01.T01:CDS
TGGAACAAGAGTGGCAGTGC+TGG 0.503897 2:-59521574 MsG0280009863.01.T01:CDS
TGGAGAAAGAACCGAAATTG+AGG 0.505243 2:-59520851 MsG0280009863.01.T01:CDS
CTGAGAAAATGTTCGAATAC+GGG 0.508576 2:-59521004 MsG0280009863.01.T01:CDS
CATATTGGATTTCACGCAAT+CGG 0.510526 2:-59520946 MsG0280009863.01.T01:CDS
TCTTTAGTGCTGGTGGGAAG+AGG 0.511599 2:-59522377 MsG0280009863.01.T01:CDS
TCATGTTTGCACAATCATCA+TGG 0.521316 2:-59521542 MsG0280009863.01.T01:CDS
GCTAAACGATACACACTTGG+AGG 0.522408 2:+59520687 None:intergenic
GGATGCTCTTGATAGATTGT+AGG 0.526067 2:-59522438 MsG0280009863.01.T01:intron
AGTCATTAAACTTATCAGCC+AGG 0.530858 2:-59521493 MsG0280009863.01.T01:intron
GGAGAAAGAACCGAAATTGA+GGG 0.533563 2:-59520850 MsG0280009863.01.T01:CDS
CAACCTATTTGGTGAAATAG+GGG 0.541722 2:+59522931 None:intergenic
GATGAGAGTGACATGAGAAG+AGG 0.542931 2:-59522080 MsG0280009863.01.T01:intron
ACTTGGAAAGCCTGCATGCA+CGG 0.542947 2:-59520916 MsG0280009863.01.T01:CDS
ACAATTCTATTACGGTTCAA+AGG 0.563304 2:+59523215 None:intergenic
GCTGAGCAGATCTTTAGTGC+TGG 0.564731 2:-59522387 MsG0280009863.01.T01:CDS
GACACCAAGAACACAAGAGC+CGG 0.565484 2:+59522348 None:intergenic
GAGCAGATCTTTAGTGCTGG+TGG 0.569958 2:-59522384 MsG0280009863.01.T01:CDS
TCGTTTAGCTCTTGAGGACA+TGG 0.571941 2:-59520673 MsG0280009863.01.T01:CDS
AGCAGATCTTTAGTGCTGGT+GGG 0.574274 2:-59522383 MsG0280009863.01.T01:CDS
TGGTGACATATAATCTTCAA+AGG 0.582035 2:-59520653 MsG0280009863.01.T01:CDS
AATCGAAAGAGCACAAGAGT+TGG 0.582560 2:-59520754 MsG0280009863.01.T01:CDS
GCATGCACGGACCTCGCCAA+AGG 0.584554 2:-59520903 MsG0280009863.01.T01:CDS
TGTGTATCGTTTAGCTCTTG+AGG 0.586196 2:-59520679 MsG0280009863.01.T01:CDS
AAGTTGGTTAAGAGTTGTGG+GGG 0.591345 2:-59520777 MsG0280009863.01.T01:CDS
TCTTGATGAAGCGATCAAGT+TGG 0.594343 2:-59520793 MsG0280009863.01.T01:CDS
TATGTCGTCGACAACTTGGA+AGG 0.598026 2:+59520965 None:intergenic
TACCAGTGTATAGACATTGA+AGG 0.605637 2:-59520502 MsG0280009863.01.T01:three_prime_UTR
TCAAATGTTTGGAACAAGAG+TGG 0.606800 2:-59521583 MsG0280009863.01.T01:CDS
TGGTGGGAAGAGGATGAGAC+CGG 0.611153 2:-59522367 MsG0280009863.01.T01:CDS
CTGTCAGGTTACCTTTGGCG+AGG 0.615618 2:+59520892 None:intergenic
ATCCTTCAATGTCTATACAC+TGG 0.623488 2:+59520500 None:intergenic
AGAGCTAAACGATACACACT+TGG 0.629738 2:+59520684 None:intergenic
CAAGTTGGTTAAGAGTTGTG+GGG 0.643343 2:-59520778 MsG0280009863.01.T01:CDS
TTATGAATTACATCGCACAA+TGG 0.669043 2:-59523283 MsG0280009863.01.T01:CDS
AGATCCAAGAAAATAAAATG+GGG 0.695397 2:+59520407 None:intergenic
CTCAAGGCCATATAGCTCTG+CGG 0.706545 2:+59522317 None:intergenic
TACGCTGGCAGCAATCAAGG+AGG 0.714158 2:+59521067 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGAAAAAATCATTATTT+CGG - Chr2:59522371-59522390 MsG0280009863.01.T01:CDS 10.0%
!! TAAGATCATAAATACAAAAA+TGG + Chr2:59523201-59523220 None:intergenic 15.0%
!! TGATCAAATAAATTATAACA+TGG + Chr2:59521726-59521745 None:intergenic 15.0%
!!! TTTCTTTTTCAAATTAGTAT+TGG - Chr2:59520509-59520528 MsG0280009863.01.T01:three_prime_UTR 15.0%
!!! TTTTAAAAGTTGTATAATGA+TGG + Chr2:59522190-59522209 None:intergenic 15.0%
!!! TTTTATTATTGCAAAACTTT+TGG - Chr2:59522448-59522467 MsG0280009863.01.T01:intron 15.0%
!! AAGTAATTGATATCCATTTA+AGG + Chr2:59522308-59522327 None:intergenic 20.0%
!! AATATCTGACAATTCTATTA+CGG + Chr2:59520447-59520466 None:intergenic 20.0%
!! AGTAATTGATATCCATTTAA+GGG + Chr2:59522307-59522326 None:intergenic 20.0%
!! ATTTCTAAATAAGTATCACT+AGG + Chr2:59521600-59521619 None:intergenic 20.0%
!! GTGATGTCAAAAATATTAAA+CGG + Chr2:59521625-59521644 None:intergenic 20.0%
!! TAAAAACAATGTTTAGAAAC+TGG + Chr2:59522433-59522452 None:intergenic 20.0%
!!! GTCATATAAATAGAATTTTC+AGG + Chr2:59521427-59521446 None:intergenic 20.0%
!!! TAACTTGCTTTCAAATAATA+GGG - Chr2:59522031-59522050 MsG0280009863.01.T01:intron 20.0%
!!! TTTGACATCACTTTATTTTT+CGG - Chr2:59521634-59521653 MsG0280009863.01.T01:intron 20.0%
! AATGGATATCAATTACTTCA+AGG - Chr2:59522310-59522329 MsG0280009863.01.T01:intron 25.0%
! AATTGAATGTTACATGTGTT+TGG + Chr2:59520478-59520497 None:intergenic 25.0%
! AGATCCAAGAAAATAAAATG+GGG + Chr2:59523247-59523266 None:intergenic 25.0%
! ATGGATATCAATTACTTCAA+GGG - Chr2:59522311-59522330 MsG0280009863.01.T01:intron 25.0%
! CAGATCCAAGAAAATAAAAT+GGG + Chr2:59523248-59523267 None:intergenic 25.0%
! CATCAGTTAAACTAACATAT+AGG + Chr2:59521192-59521211 None:intergenic 25.0%
! GTAATTGATATCCATTTAAG+GGG + Chr2:59522306-59522325 None:intergenic 25.0%
! TGGTATATACTTTCATAGAA+AGG - Chr2:59521909-59521928 MsG0280009863.01.T01:intron 25.0%
! TTGATGGAAAAGAAAAAACA+AGG + Chr2:59521966-59521985 None:intergenic 25.0%
!! ATATGTTAGTTTAACTGATG+AGG - Chr2:59521192-59521211 MsG0280009863.01.T01:intron 25.0%
!! ATTGTTCAGTGATTTTAAAC+AGG - Chr2:59520907-59520926 MsG0280009863.01.T01:CDS 25.0%
!! TAATGACTTCAATGTTTTCA+AGG + Chr2:59522146-59522165 None:intergenic 25.0%
!!! AATTTTGGCATTGAAAGATT+TGG - Chr2:59520627-59520646 MsG0280009863.01.T01:exon 25.0%
!!! ATTTGGTTTGGTTTTTGAAT+AGG - Chr2:59520644-59520663 MsG0280009863.01.T01:CDS 25.0%
!!! CCATTTTTCTCAAACTTTAT+GGG - Chr2:59521676-59521695 MsG0280009863.01.T01:intron 25.0%
!!! CTAACTTGCTTTCAAATAAT+AGG - Chr2:59522030-59522049 MsG0280009863.01.T01:intron 25.0%
!!! TGATTTTAGAAGTGGAATTT+TGG - Chr2:59520612-59520631 MsG0280009863.01.T01:three_prime_UTR 25.0%
!!! TTTTCAAATTAGTATTGGTC+TGG - Chr2:59520514-59520533 MsG0280009863.01.T01:three_prime_UTR 25.0%
!!! TTTTCCCCATTTTATTTTCT+TGG - Chr2:59523240-59523259 MsG0280009863.01.T01:CDS 25.0%
AATATGAAAGAACGTATGCT+AGG - Chr2:59522271-59522290 MsG0280009863.01.T01:intron 30.0%
ACAATTCTATTACGGTTCAA+AGG + Chr2:59520439-59520458 None:intergenic 30.0%
ACTACTTCAAACAACCTATT+TGG + Chr2:59520734-59520753 None:intergenic 30.0%
ACTGAGAAAATGTTCGAATA+CGG - Chr2:59522646-59522665 MsG0280009863.01.T01:intron 30.0%
AGTTTGAGAAAAATGGCTTT+AGG + Chr2:59521672-59521691 None:intergenic 30.0%
ATACGTTCTTTCATATTCAC+CGG + Chr2:59522268-59522287 None:intergenic 30.0%
ATCAATTACTTCAAGGGATT+GGG - Chr2:59522317-59522336 MsG0280009863.01.T01:intron 30.0%
ATCTTGAAATGAATGATTGC+AGG - Chr2:59521467-59521486 MsG0280009863.01.T01:intron 30.0%
ATTTCCTTTACACATGCATA+TGG - Chr2:59521749-59521768 MsG0280009863.01.T01:intron 30.0%
CCAGATCCAAGAAAATAAAA+TGG + Chr2:59523249-59523268 None:intergenic 30.0%
CCCATAAAGTTTGAGAAAAA+TGG + Chr2:59521679-59521698 None:intergenic 30.0%
CTGAAGGATTATTGACAAAT+TGG - Chr2:59521889-59521908 MsG0280009863.01.T01:intron 30.0%
GAAACTGTTCATCAAATGTT+TGG - Chr2:59522057-59522076 MsG0280009863.01.T01:intron 30.0%
TATCAATTACTTCAAGGGAT+TGG - Chr2:59522316-59522335 MsG0280009863.01.T01:intron 30.0%
TCAATGATATCCCTCAATTT+CGG + Chr2:59522814-59522833 None:intergenic 30.0%
TCTTGAAATGAATGATTGCA+GGG - Chr2:59521468-59521487 MsG0280009863.01.T01:intron 30.0%
TGGTGACATATAATCTTCAA+AGG - Chr2:59522998-59523017 MsG0280009863.01.T01:intron 30.0%
TGTGCGATGTAATTCATAAA+CGG + Chr2:59520367-59520386 None:intergenic 30.0%
TTATGAATTACATCGCACAA+TGG - Chr2:59520368-59520387 MsG0280009863.01.T01:three_prime_UTR 30.0%
TTGCTTTCAAATAATAGGGA+AGG - Chr2:59522035-59522054 MsG0280009863.01.T01:intron 30.0%
TTTCAAATTCTGCTATGCTA+TGG - Chr2:59521060-59521079 MsG0280009863.01.T01:CDS 30.0%
TTTGTCAATAATCCTTCAGA+AGG + Chr2:59521888-59521907 None:intergenic 30.0%
! AACAACCTATTTGGTGAAAT+AGG + Chr2:59520725-59520744 None:intergenic 30.0%
! ACAACCTATTTGGTGAAATA+GGG + Chr2:59520724-59520743 None:intergenic 30.0%
!!! CCATTTTATTTTCTTGGATC+TGG - Chr2:59523246-59523265 MsG0280009863.01.T01:CDS 30.0%
!!! GCCATTTTTCTCAAACTTTA+TGG - Chr2:59521675-59521694 MsG0280009863.01.T01:intron 30.0%
!!! GTTCGTATTGATTTTAGAAG+TGG - Chr2:59520604-59520623 MsG0280009863.01.T01:three_prime_UTR 30.0%
ACAACATCGAGTTAGAATAG+AGG + Chr2:59522008-59522027 None:intergenic 35.0%
AGAAAAGCTGAAAAGCAAGA+AGG + Chr2:59521135-59521154 None:intergenic 35.0%
AGTCATTAAACTTATCAGCC+AGG - Chr2:59522158-59522177 MsG0280009863.01.T01:CDS 35.0%
ATACATAGCAGATGTAGCTT+TGG + Chr2:59521863-59521882 None:intergenic 35.0%
ATCCTTCAATGTCTATACAC+TGG + Chr2:59523154-59523173 None:intergenic 35.0%
CAACATCGAGTTAGAATAGA+GGG + Chr2:59522007-59522026 None:intergenic 35.0%
CATATTGGATTTCACGCAAT+CGG - Chr2:59522705-59522724 MsG0280009863.01.T01:intron 35.0%
CTGAGAAAATGTTCGAATAC+GGG - Chr2:59522647-59522666 MsG0280009863.01.T01:intron 35.0%
GAGATCTGTATACTTACTCA+AGG + Chr2:59521353-59521372 None:intergenic 35.0%
GCAATTAAAGACCTTGCAAA+AGG - Chr2:59520671-59520690 MsG0280009863.01.T01:CDS 35.0%
GGAAATCAAATGTCACAGTT+TGG + Chr2:59521945-59521964 None:intergenic 35.0%
TACCAGTGTATAGACATTGA+AGG - Chr2:59523149-59523168 MsG0280009863.01.T01:intron 35.0%
TATACTCAAACAGACAAGAC+AGG + Chr2:59520868-59520887 None:intergenic 35.0%
TCAGCTGCAGATATTAAAAC+TGG + Chr2:59521249-59521268 None:intergenic 35.0%
TCATGTTTGCACAATCATCA+TGG - Chr2:59522109-59522128 MsG0280009863.01.T01:CDS 35.0%
TTTCTTGGATCTGGTTGTAA+GGG - Chr2:59523255-59523274 MsG0280009863.01.T01:CDS 35.0%
! CAACCTATTTGGTGAAATAG+GGG + Chr2:59520723-59520742 None:intergenic 35.0%
! GTATAATGATGGAACTTACC+TGG + Chr2:59522179-59522198 None:intergenic 35.0%
! GTGATTAAAGATTTTGCCAG+TGG - Chr2:59522481-59522500 MsG0280009863.01.T01:intron 35.0%
! TACCTGCTATTTGACAATAC+TGG - Chr2:59521088-59521107 MsG0280009863.01.T01:CDS 35.0%
! TCAAATGTTTGGAACAAGAG+TGG - Chr2:59522068-59522087 MsG0280009863.01.T01:intron 35.0%
! TCAAGTTCAATCCTTTTGCA+AGG + Chr2:59520685-59520704 None:intergenic 35.0%
! TGGCATTGAAAGATTTGGTT+TGG - Chr2:59520632-59520651 MsG0280009863.01.T01:exon 35.0%
! TTTTCTTGGATCTGGTTGTA+AGG - Chr2:59523254-59523273 MsG0280009863.01.T01:CDS 35.0%
!! ATCAAGTTGGTTAAGAGTTG+TGG - Chr2:59522871-59522890 MsG0280009863.01.T01:intron 35.0%
!! GACTTCAATGTTTTCAAGGT+TGG + Chr2:59522142-59522161 None:intergenic 35.0%
!! TCAAGTTGGTTAAGAGTTGT+GGG - Chr2:59522872-59522891 MsG0280009863.01.T01:intron 35.0%
!!! AATCCCTTTGTGCTACTTTT+TGG - Chr2:59523124-59523143 MsG0280009863.01.T01:intron 35.0%
!!! ATCCCTTTGTGCTACTTTTT+GGG - Chr2:59523125-59523144 MsG0280009863.01.T01:intron 35.0%
!!! GGGCGTTTTGATTTTAATCT+TGG - Chr2:59521696-59521715 MsG0280009863.01.T01:intron 35.0%
!!! TGGTTTGGTTTTTGAATAGG+TGG - Chr2:59520647-59520666 MsG0280009863.01.T01:CDS 35.0%
ACCCCAAAAAGTAGCACAAA+GGG + Chr2:59523130-59523149 None:intergenic 40.0%
ACTATAGCGCTATAGTGTAG+CGG + Chr2:59520976-59520995 None:intergenic 40.0%
AGAGCTAAACGATACACACT+TGG + Chr2:59522970-59522989 None:intergenic 40.0%
ATCATTCCAAGATTCAACCC+TGG - Chr2:59522242-59522261 MsG0280009863.01.T01:intron 40.0%
CAACCCCTATTTCACCAAAT+AGG - Chr2:59520717-59520736 MsG0280009863.01.T01:CDS 40.0%
CAGACCATATGCATGTGTAA+AGG + Chr2:59521756-59521775 None:intergenic 40.0%
GAAAGAACGTATGCTAGGAT+AGG - Chr2:59522276-59522295 MsG0280009863.01.T01:intron 40.0%
GACCAGTATTGTCAAATAGC+AGG + Chr2:59521093-59521112 None:intergenic 40.0%
GAGTCTGAATTTAGCGAGAT+TGG - Chr2:59522832-59522851 MsG0280009863.01.T01:intron 40.0%
GGAGAAAGAACCGAAATTGA+GGG - Chr2:59522801-59522820 MsG0280009863.01.T01:intron 40.0%
GGATGCTCTTGATAGATTGT+AGG - Chr2:59521213-59521232 MsG0280009863.01.T01:intron 40.0%
TACCCCAAAAAGTAGCACAA+AGG + Chr2:59523131-59523150 None:intergenic 40.0%
TCTTGATGAAGCGATCAAGT+TGG - Chr2:59522858-59522877 MsG0280009863.01.T01:intron 40.0%
TGCTATGTATCACCTTCTGA+AGG - Chr2:59521873-59521892 MsG0280009863.01.T01:intron 40.0%
TGGAGAAAGAACCGAAATTG+AGG - Chr2:59522800-59522819 MsG0280009863.01.T01:intron 40.0%
TTCGAATACGGGAAGAATCT+CGG - Chr2:59522658-59522677 MsG0280009863.01.T01:intron 40.0%
TTCTCCAACGCGAAAATTAC+AGG + Chr2:59522787-59522806 None:intergenic 40.0%
! AAGTTGGTTAAGAGTTGTGG+GGG - Chr2:59522874-59522893 MsG0280009863.01.T01:intron 40.0%
! AATCGAAAGAGCACAAGAGT+TGG - Chr2:59522897-59522916 MsG0280009863.01.T01:CDS 40.0%
! AGTGTAGCGGAATTCAAAAG+CGG + Chr2:59520963-59520982 None:intergenic 40.0%
! TTCTTTTCCATCAACTCTGC+TGG - Chr2:59521972-59521991 MsG0280009863.01.T01:intron 40.0%
!! AGCTTGCTTTATTTCTCCAC+TGG + Chr2:59522500-59522519 None:intergenic 40.0%
!! CAAAACTTTTGGTGTGTGAC+AGG - Chr2:59522459-59522478 MsG0280009863.01.T01:intron 40.0%
!! CAAGTTGGTTAAGAGTTGTG+GGG - Chr2:59522873-59522892 MsG0280009863.01.T01:intron 40.0%
!! TCTTGTGTTCTTGGTGTCAA+GGG - Chr2:59521308-59521327 MsG0280009863.01.T01:intron 40.0%
!! TGTGTATCGTTTAGCTCTTG+AGG - Chr2:59522972-59522991 MsG0280009863.01.T01:CDS 40.0%
!!! GTGTGCTGTTTTCTACTATC+TGG - Chr2:59520821-59520840 MsG0280009863.01.T01:CDS 40.0%
!!! TCCCTTTGTGCTACTTTTTG+GGG - Chr2:59523126-59523145 MsG0280009863.01.T01:intron 40.0%
ACTGAAACCAGCAGAGTTGA+TGG + Chr2:59521982-59522001 None:intergenic 45.0%
CCAAGTTGTCGACGACATAT+TGG - Chr2:59522690-59522709 MsG0280009863.01.T01:intron 45.0%
CCAATATGTCGTCGACAACT+TGG + Chr2:59522693-59522712 None:intergenic 45.0%
CGAAAATTACAGGAGCTGTC+AGG + Chr2:59522777-59522796 None:intergenic 45.0%
GATGAGAGTGACATGAGAAG+AGG - Chr2:59521571-59521590 MsG0280009863.01.T01:CDS 45.0%
GCACAAAGGGATTGTGTTGA+TGG + Chr2:59523117-59523136 None:intergenic 45.0%
GCTAAACGATACACACTTGG+AGG + Chr2:59522967-59522986 None:intergenic 45.0%
GGATAGGTCAACCCCTTAAA+TGG - Chr2:59522292-59522311 MsG0280009863.01.T01:intron 45.0%
GTGTATGCAAGCGTGTAACA+TGG + Chr2:59521383-59521402 None:intergenic 45.0%
TATGTCGTCGACAACTTGGA+AGG + Chr2:59522689-59522708 None:intergenic 45.0%
TCTTTCATATTCACCGGCCA+GGG + Chr2:59522262-59522281 None:intergenic 45.0%
TTCTTTCATATTCACCGGCC+AGG + Chr2:59522263-59522282 None:intergenic 45.0%
TTGATTGCTGCCAGCGTAAA+AGG - Chr2:59522589-59522608 MsG0280009863.01.T01:intron 45.0%
TTGTCAAATAGCCGCTGTTG+CGG + Chr2:59521000-59521019 None:intergenic 45.0%
TTTGGTGAAATAGGGGTTGC+TGG + Chr2:59520716-59520735 None:intergenic 45.0%
! AAAGGAGCTGCAGTTTTCAG+CGG - Chr2:59522607-59522626 MsG0280009863.01.T01:intron 45.0%
! AGCTCCTGTAATTTTCGCGT+TGG - Chr2:59522780-59522799 MsG0280009863.01.T01:intron 45.0%
! GACATGTAAGTGTGTCACTG+CGG - Chr2:59520536-59520555 MsG0280009863.01.T01:three_prime_UTR 45.0%
! TTTTACGCTGGCAGCAATCA+AGG + Chr2:59522590-59522609 None:intergenic 45.0%
!! AGCAGATCTTTAGTGCTGGT+GGG - Chr2:59521268-59521287 MsG0280009863.01.T01:intron 45.0%
!! CTCTTGTGTTCTTGGTGTCA+AGG - Chr2:59521307-59521326 MsG0280009863.01.T01:intron 45.0%
!! TCGTTTAGCTCTTGAGGACA+TGG - Chr2:59522978-59522997 MsG0280009863.01.T01:CDS 45.0%
ACTTGGAAAGCCTGCATGCA+CGG - Chr2:59522735-59522754 MsG0280009863.01.T01:intron 50.0%
AGGAGCTGTCAGGTTACCTT+TGG + Chr2:59522767-59522786 None:intergenic 50.0%
GAAAAGCAAGAAGGCTCAGC+AGG + Chr2:59521126-59521145 None:intergenic 50.0%
GACACCAAGAACACAAGAGC+CGG + Chr2:59521306-59521325 None:intergenic 50.0%
GCTGAGCAGATCTTTAGTGC+TGG - Chr2:59521264-59521283 MsG0280009863.01.T01:intron 50.0%
TTCCAAGATTCAACCCTGGC+CGG - Chr2:59522246-59522265 MsG0280009863.01.T01:intron 50.0%
! AACTGCAGCTCCTTTTACGC+TGG + Chr2:59522602-59522621 None:intergenic 50.0%
! CTCAAGGCCATATAGCTCTG+CGG + Chr2:59521337-59521356 None:intergenic 50.0%
! GAGCAGATCTTTAGTGCTGG+TGG - Chr2:59521267-59521286 MsG0280009863.01.T01:intron 50.0%
!! TCTTTAGTGCTGGTGGGAAG+AGG - Chr2:59521274-59521293 MsG0280009863.01.T01:intron 50.0%
ACGCAATCGGCAGAGCAACT+TGG - Chr2:59522718-59522737 MsG0280009863.01.T01:intron 55.0%
ACTTGCGCGCAGGGTTACTT+TGG - Chr2:59522346-59522365 MsG0280009863.01.T01:CDS 55.0%
AGTAACCCTGCGCGCAAGTA+TGG + Chr2:59522345-59522364 None:intergenic 55.0%
CTGTCAGGTTACCTTTGGCG+AGG + Chr2:59522762-59522781 None:intergenic 55.0%
GCGCTATAGTACCGCAACAG+CGG - Chr2:59520986-59521005 MsG0280009863.01.T01:CDS 55.0%
TACGCTGGCAGCAATCAAGG+AGG + Chr2:59522587-59522606 None:intergenic 55.0%
TGGAACAAGAGTGGCAGTGC+TGG - Chr2:59522077-59522096 MsG0280009863.01.T01:intron 55.0%
TGGTGGGAAGAGGATGAGAC+CGG - Chr2:59521284-59521303 MsG0280009863.01.T01:intron 55.0%
! GAGACCGGCTCTTGTGTTCT+TGG - Chr2:59521299-59521318 MsG0280009863.01.T01:intron 55.0%
AGGGCGACCGCAGAGCTATA+TGG - Chr2:59521327-59521346 MsG0280009863.01.T01:intron 60.0%
CACCGGCCAGGGTTGAATCT+TGG + Chr2:59522251-59522270 None:intergenic 60.0%
!! ACAAGAGTGGCAGTGCTGGC+TGG - Chr2:59522081-59522100 MsG0280009863.01.T01:CDS 60.0%
GCATGCACGGACCTCGCCAA+AGG - Chr2:59522748-59522767 MsG0280009863.01.T01:intron 65.0%
GGGCTCCATACTTGCGCGCA+GGG - Chr2:59522337-59522356 MsG0280009863.01.T01:CDS 65.0%
TGGGCTCCATACTTGCGCGC+AGG - Chr2:59522336-59522355 MsG0280009863.01.T01:CDS 65.0%
TTGGCGAGGTCCGTGCATGC+AGG + Chr2:59522748-59522767 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 59520361 59523312 59520361 ID=MsG0280009863.01;Name=MsG0280009863.01
Chr2 mRNA 59520361 59523312 59520361 ID=MsG0280009863.01.T01;Parent=MsG0280009863.01;Name=MsG0280009863.01.T01;_AED=0.47;_eAED=0.50;_QI=0|0.8|0.83|1|1|1|6|283|373
Chr2 exon 59520361 59521192 59520361 ID=MsG0280009863.01.T01:exon:6185;Parent=MsG0280009863.01.T01
Chr2 exon 59521494 59521621 59521494 ID=MsG0280009863.01.T01:exon:6184;Parent=MsG0280009863.01.T01
Chr2 exon 59522081 59522184 59522081 ID=MsG0280009863.01.T01:exon:6183;Parent=MsG0280009863.01.T01
Chr2 exon 59522318 59522445 59522318 ID=MsG0280009863.01.T01:exon:6182;Parent=MsG0280009863.01.T01
Chr2 exon 59522880 59523007 59522880 ID=MsG0280009863.01.T01:exon:6181;Parent=MsG0280009863.01.T01
Chr2 exon 59523228 59523312 59523228 ID=MsG0280009863.01.T01:exon:6180;Parent=MsG0280009863.01.T01
Chr2 CDS 59523228 59523312 59523228 ID=MsG0280009863.01.T01:cds;Parent=MsG0280009863.01.T01
Chr2 CDS 59522880 59523007 59522880 ID=MsG0280009863.01.T01:cds;Parent=MsG0280009863.01.T01
Chr2 CDS 59522318 59522445 59522318 ID=MsG0280009863.01.T01:cds;Parent=MsG0280009863.01.T01
Chr2 CDS 59522081 59522184 59522081 ID=MsG0280009863.01.T01:cds;Parent=MsG0280009863.01.T01
Chr2 CDS 59521494 59521621 59521494 ID=MsG0280009863.01.T01:cds;Parent=MsG0280009863.01.T01
Chr2 CDS 59520644 59521192 59520644 ID=MsG0280009863.01.T01:cds;Parent=MsG0280009863.01.T01
Chr2 three_prime_UTR 59520361 59520643 59520361 ID=MsG0280009863.01.T01:three_prime_utr;Parent=MsG0280009863.01.T01
Gene Sequence

>MsG0280009863.01.T01

ATGCCGTTTATGAATTACATCGCACAATGGAGAAGTGTTGCAAAAGAAGCATTAGATCGCTCAGTAATGAAGTCACCTTTGAACCGTGGAGCAATTAAAGACCTTGCAAAAGGATTGAACTTGAAGAGTTATCCAGCAACCCCTATTTCACCAAATAGGTTGTTTGAAGTAGTCTCTGATGATCTTCAAACACTCAATAAAAATCTTCAGTCTATTGTAGGTGCAGAAAATCCAGTTTTAATATCTGCAGCTGAGCAGATCTTTAGTGCTGGTGGGAAGAGGATGAGACCGGCTCTTGTGTTCTTGGTGTCAAGGGCGACCGCAGAGCTATATGGCCTTGAGGATCTTACTGTAAAGCATCGACGTTTAGCTGAAATAGTCGAAATTATTCATACTGCAAGTTTGATACATGATGATGTGTTAGATGAGAGTGACATGAGAAGAGGGAAGGAAACTGTTCATCAAATGTTTGGAACAAGAGTGGCAGTGCTGGCTGGAGACTTCATGTTTGCACAATCATCATGGTATCTCGCCAACCTTGAAAACATTGAAGTCATTAAACTTATCAGCCAGGTGATTAAAGATTTTGCCAGTGGAGAAATAAAGCAAGCTTCTAGCTTGTTTGATTGTGATGTTCAGCTCGACGAGTATCTAATCAAGAGTTATTTTAAGACAGCCTCCTTGATTGCTGCCAGCGTAAAAGGAGCTGCAGTTTTCAGCGGTTCTGACAGCAGCATGACTGAGAAAATGTTCGAATACGGGAAGAATCTCGGTCTCTCCTTCCAAGTTGTCGACGACATATTGGATTTCACGCAATCGGCAGAGCAACTTGGAAAGCCTGCATGCACGGACCTCGCCAAAGGTAACCTGACAGCTCCTGTAATTTTCGCGTTGGAGAAAGAACCGAAATTGAGGGATATCATTGAGTCTGAATTTAGCGAGATTGGTTCTCTTGATGAAGCGATCAAGTTGGTTAAGAGTTGTGGGGGAATCGAAAGAGCACAAGAGTTGGCAAAAGAGAAAGCTGATCTTGCTATTCAAAGTCTTCAATGTCTTCCTCCAAGTGTGTATCGTTTAGCTCTTGAGGACATGGTGACATATAATCTTCAAAGGATTGCATAA

Protein sequence

>MsG0280009863.01.T01

MPFMNYIAQWRSVAKEALDRSVMKSPLNRGAIKDLAKGLNLKSYPATPISPNRLFEVVSDDLQTLNKNLQSIVGAENPVLISAAEQIFSAGGKRMRPALVFLVSRATAELYGLEDLTVKHRRLAEIVEIIHTASLIHDDVLDESDMRRGKETVHQMFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVQLDEYLIKSYFKTASLIAASVKGAAVFSGSDSSMTEKMFEYGKNLGLSFQVVDDILDFTQSAEQLGKPACTDLAKGNLTAPVIFALEKEPKLRDIIESEFSEIGSLDEAIKLVKSCGGIERAQELAKEKADLAIQSLQCLPPSVYRLALEDMVTYNLQRIA*