AlfalfaGEDB | MsG0880042000.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042000.01

KEGG: -
GO: GO:0016491 GO:0055114
PFAM: PF03171 PF14226

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042000.01.T01	RHN38771.1	93.617	282	18	0	1	282	36	317	0	555

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042000.01.T01	Q9LTH7	57.353	272	108	5	17	282	14	283	1.26E-113	335

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042000.01.T01	A0A396GEQ8	93.617	282	18	0	1	282	36	317	0.0	555

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047884.01	MsG0880042000.01	0.808278	3.350437e-50	1.907756e-47
MsG0080048016.01	MsG0880042000.01	0.809791	1.588867e-50	9.416862e-48
MsG0080048505.01	MsG0880042000.01	0.801438	9.005991e-49	4.300882e-46
MsG0080048748.01	MsG0880042000.01	0.861719	8.421669e-64	2.404883e-60
MsG0080048845.01	MsG0880042000.01	0.840492	8.419121e-58	1.201286e-54
MsG0080048849.01	MsG0880042000.01	0.801410	9.124609e-49	4.354406e-46
MsG0080048938.01	MsG0880042000.01	0.920744	8.677542e-88	2.991497e-83
MsG0080048969.01	MsG0880042000.01	0.826127	3.216801e-54	2.990186e-51
MsG0080049130.01	MsG0880042000.01	0.829370	5.345901e-55	5.461215e-52
MsG0180000017.01	MsG0880042000.01	0.832326	1.007524e-55	1.122282e-52

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PPI

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Gene1	Gene2	Type
MsG0380013349.01	MsG0880042000.01	PPI
MsG0380013353.01	MsG0880042000.01	PPI
MsG0780040397.01	MsG0880042000.01	PPI
MsG0780040403.01	MsG0880042000.01	PPI
MsG0880042000.01	MsG0780041043.01	PPI
MsG0880042000.01	MsG0280009892.01	PPI
MsG0880042000.01	MsG0280009893.01	PPI
MsG0880042000.01	MsG0380013343.01	PPI
MsG0880042000.01	MsG0280009917.01	PPI
MsG0880042000.01	MsG0280009915.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042000.01.T01	MTR_8g009110	93.262	282	19	0	1	282	1	282	0.0	551
MsG0880042000.01.T01	MTR_8g009170	87.458	295	37	0	1	295	1	295	0.0	537
MsG0880042000.01.T01	MTR_8g009170	86.879	282	37	0	1	282	1	282	0.0	512
MsG0880042000.01.T01	MTR_8g009160	86.170	282	38	1	1	282	1	281	0.0	509
MsG0880042000.01.T01	MTR_8g028435	86.170	282	38	1	1	282	1	281	2.93e-180	501
MsG0880042000.01.T01	MTR_8g009090	83.333	282	46	1	1	282	1	281	3.40e-175	488
MsG0880042000.01.T01	MTR_8g008930	81.272	283	51	2	1	282	1	282	1.69e-172	482
MsG0880042000.01.T01	MTR_8g009150	77.660	282	43	1	1	282	1	262	1.65e-161	453
MsG0880042000.01.T01	MTR_8g009120	76.923	286	54	1	1	286	1	274	1.25e-160	451
MsG0880042000.01.T01	MTR_4g117880	73.498	283	73	2	1	282	1	282	9.47e-154	434

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042000.01.T01	AT5G43440	56.318	277	111	4	15	284	11	284	6.66e-116	335
MsG0880042000.01.T01	AT5G59540	57.353	272	108	5	17	282	14	283	3.44e-115	333
MsG0880042000.01.T01	AT1G06620	57.993	269	108	3	19	284	18	284	9.81e-115	332
MsG0880042000.01.T01	AT5G59540	57.353	272	108	5	17	282	14	283	1.29e-114	335
MsG0880042000.01.T01	AT5G43440	56.000	275	111	4	15	282	11	282	1.90e-113	332
MsG0880042000.01.T01	AT1G06620	58.052	267	107	3	19	282	18	282	4.50e-113	331
MsG0880042000.01.T01	AT1G06640	55.944	286	115	4	16	293	14	296	3.26e-112	327
MsG0880042000.01.T01	AT1G04350	55.147	272	112	4	16	282	10	276	3.18e-110	323
MsG0880042000.01.T01	AT1G06650	55.678	273	114	3	16	282	14	285	3.17e-109	319
MsG0880042000.01.T01	AT5G59530	56.777	273	107	7	17	282	13	281	3.34e-109	321

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Find 66 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACTATTATAAACAA+AGG	0.603110	8:-2323209	None:intergenic
AAAGATATGGATTGTGCAGA+AGG	0.514588	8:+2324344	MsG0880042000.01.T01:CDS
AAAGATCCAAGTATTCATCA+AGG	0.518202	8:+2323019	MsG0880042000.01.T01:CDS
AACTCCTCAAGAACACTTAA+AGG	0.202429	8:-2323109	None:intergenic
AAGAGTTTCCTGTGGTATGC+AGG	0.491788	8:+2323311	MsG0880042000.01.T01:CDS
AAGATATGGATTGTGCAGAA+GGG	0.648373	8:+2324345	MsG0880042000.01.T01:CDS
AAGATCCAAGTATTCATCAA+GGG	0.612697	8:+2323020	MsG0880042000.01.T01:CDS
AAGGAAGCATGTGAAACTTG+GGG	0.598891	8:+2323058	MsG0880042000.01.T01:CDS
AAGTTCTTTATGACGATAAA+TGG	0.169397	8:+2324489	MsG0880042000.01.T01:CDS
AATAACATGGCTCATGTTGT+TGG	0.430352	8:-2322966	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATCCAAGTATTCATCA+AGG	+	Chr8:2323019-2323038	MsG0880042000.01.T01:CDS	30.0%
AAATTCTTAGAAATCGTGGT+TGG	-	Chr8:2323589-2323608	None:intergenic	30.0%
AAGATCCAAGTATTCATCAA+GGG	+	Chr8:2323020-2323039	MsG0880042000.01.T01:CDS	30.0%
AATTCTTAGAAATCGTGGTT+GGG	-	Chr8:2323588-2323607	None:intergenic	30.0%
ACCAAACCATTTGAAAGATA+TGG	+	Chr8:2324331-2324350	MsG0880042000.01.T01:CDS	30.0%
AGAAGAGAACAAAAGAACAA+AGG	-	Chr8:2323685-2323704	None:intergenic	30.0%
AGTATGACTTAAATATGCAG+CGG	-	Chr8:2323957-2323976	None:intergenic	30.0%
ATTTAAGTCATACTCAAGCT+TGG	+	Chr8:2323963-2323982	MsG0880042000.01.T01:intron	30.0%
CACAATCCATATCTTTCAAA+TGG	-	Chr8:2324340-2324359	None:intergenic	30.0%
CTGACAATGTGTTTATAAGT+GGG	+	Chr8:2323519-2323538	MsG0880042000.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	2322809	2324613	2322809	ID=MsG0880042000.01;Name=MsG0880042000.01
Chr8	mRNA	2322809	2324613	2322809	ID=MsG0880042000.01.T01;Parent=MsG0880042000.01;Name=MsG0880042000.01.T01;_AED=0.49;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|2\|0\|296
Chr8	exon	2322809	2323332	2322809	ID=MsG0880042000.01.T01:exon:1793;Parent=MsG0880042000.01.T01
Chr8	exon	2324247	2324613	2324247	ID=MsG0880042000.01.T01:exon:1794;Parent=MsG0880042000.01.T01
Chr8	CDS	2322809	2323332	2322809	ID=MsG0880042000.01.T01:cds;Parent=MsG0880042000.01.T01
Chr8	CDS	2324247	2324613	2324247	ID=MsG0880042000.01.T01:cds;Parent=MsG0880042000.01.T01

Gene Sequence

>MsG0880042000.01.T01

ATGGGAACCACAGGTACAACCAAGCCTAACCTTGATTTTATATTGAATCAACGCAAAGAATTTGATGAAACAAAAGCTGGTGTAAAAGGACTTGTTGATGAAGGACTTAAGAAGATACCTGAATTATTCCATCATCAACCTGACAAATATGAGAAAGCCAACAACATGAGCCATGTTATTCCTGTCATAGACCTTAAAGATATTGGTAATAAAGATCCAAGTATTCATCAAGGGATTGTTAGCAAAATCAAGGAAGCATGTGAAACTTGGGGGTTTTTTCAAGTTGTTAATCATGGAATCCCTTTAAGTGTTCTTGAGGAGTTGAAAGATGGTGTTAAGAGGTTCTATGAACAAGACACAGAAGTCAAAAAAGCATTGTATACAAGAGATAGCAATAGATCCTTTGTTTATAATAGTAATTTTGATATTTATAGATCACCAGCACTCAATTGGAGGGATAGTTTTATGTGTTACTTGGCTCCACCTGATACTCTCAAACCACAAGAGTTTCCTGTGGTATGCAGAGATATACTAGTAGAATATGGGAAACACATGATGAATCTAGGGACTTTATTATTTGAATTGTTGTCAGAAGCATTAGTTTTGAAACCAAACCATTTGAAAGATATGGATTGTGCAGAAGGGCTAATTGCTCTTTGCCATTACTATCCTCCTTGTCCTGAACCAGAACTGACAGTGGGAACAACAAAGCATTCTGATAATGATTTCCTCACAGTGCTTCTACAAGACCATATCGGTGGTCTCCAAGTTCTTTATGACGATAAATGGATTGATATAACACCTGTACCTGGAGCTCTCATAGTTAATGTCGGAGATCTTTTGCAGGCAAGTTTTATGCATACTTATGTGTATATTTCCATAAACTGTTAG

Protein sequence

>MsG0880042000.01.T01

MGTTGTTKPNLDFILNQRKEFDETKAGVKGLVDEGLKKIPELFHHQPDKYEKANNMSHVIPVIDLKDIGNKDPSIHQGIVSKIKEACETWGFFQVVNHGIPLSVLEELKDGVKRFYEQDTEVKKALYTRDSNRSFVYNSNFDIYRSPALNWRDSFMCYLAPPDTLKPQEFPVVCRDILVEYGKHMMNLGTLLFELLSEALVLKPNHLKDMDCAEGLIALCHYYPPCPEPELTVGTTKHSDNDFLTVLLQDHIGGLQVLYDDKWIDITPVPGALIVNVGDLLQASFMHTYVYISINC*