AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042596.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042596.01.T01 MTR_3g006760 95.425 153 7 0 89 241 544 696 2.37e-88 276
MsG0880042596.01.T01 MTR_3g006760 74.194 62 15 1 26 86 414 475 5.43e-19 85.9
MsG0880042596.01.T01 MTR_8g043980 69.481 154 36 7 92 236 582 733 1.39e-57 195
MsG0880042596.01.T01 MTR_8g043980 61.905 63 21 2 26 86 447 508 3.82e-12 65.9
MsG0880042596.01.T01 MTR_3g006760 74.194 62 15 1 26 86 414 475 3.79e-19 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042596.01.T01 AT2G27100 53.175 126 45 5 123 241 594 712 1.37e-25 105

Find 111 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGTAACCTTCGCTTTAA+AGG 0.144365 8:-11220969 None:intergenic
GATCCATATGTTAGAAAATT+AGG 0.175925 8:+11220278 MsG0880042596.01.T01:CDS
GCCTTTAAAGCGAAGGTTAC+TGG 0.178081 8:+11220968 MsG0880042596.01.T01:CDS
TTCCACATATTCCAAAGTTT+TGG 0.249470 8:-11218288 None:intergenic
TCTTCATGCCTTGCTCCTTC+TGG 0.255229 8:-11220128 None:intergenic
AAGTTGCGATGCAGATGTTT+AGG 0.279432 8:+11221307 MsG0880042596.01.T01:CDS
ATGACAGTAACTTCTTCTTC+TGG 0.289300 8:-11222323 None:intergenic
TACCTCCCCGGAACAGAAAA+AGG 0.313583 8:+11222608 MsG0880042596.01.T01:three_prime_UTR
CTGGTTTGGCTCATTGAGAT+TGG 0.315755 8:+11222371 MsG0880042596.01.T01:three_prime_UTR
TGTAATCTAGTTGTAATAAT+GGG 0.326501 8:+11222443 MsG0880042596.01.T01:three_prime_UTR
CTGTAATCTAGTTGTAATAA+TGG 0.330615 8:+11222442 MsG0880042596.01.T01:three_prime_UTR
AGTTGCGATGCAGATGTTTA+GGG 0.344816 8:+11221308 MsG0880042596.01.T01:CDS
GCACAAACTTTCCAAAACTT+TGG 0.347786 8:+11218277 MsG0880042596.01.T01:CDS
TTCTAATGTTACAACATCTA+TGG 0.354148 8:-11222489 None:intergenic
AACATCTGCATCGCAACTTC+TGG 0.357957 8:-11221303 None:intergenic
GCTTGTAGGTTTCACTGGTT+TGG 0.363855 8:+11222357 MsG0880042596.01.T01:three_prime_UTR
AAAATTAGGGATGAAAAGTA+TGG 0.364669 8:+11220292 MsG0880042596.01.T01:CDS
TTCCAAAACTTTGGAATATG+TGG 0.365859 8:+11218286 MsG0880042596.01.T01:CDS
GGCAGAAAGGTTGGACAGCC+TGG 0.373312 8:+11220197 MsG0880042596.01.T01:CDS
ATCCATATGTTAGAAAATTA+GGG 0.376560 8:+11220279 MsG0880042596.01.T01:CDS
CTCCGCATCCGTCGGGGATC+AGG 0.378643 8:-11221432 None:intergenic
CATAGACTATCGGAGCTTGT+AGG 0.379735 8:+11222343 MsG0880042596.01.T01:exon
CCAGGTACAGGCATCAAAAC+TGG 0.382108 8:-11221170 None:intergenic
TTGTTCTGTCGCTCCTATCC+TGG 0.391046 8:-11221028 None:intergenic
TCAGGAATGACGATGCGTTC+TGG 0.403076 8:+11221357 MsG0880042596.01.T01:CDS
TCATGGGATGGCGAACTATC+AGG 0.408251 8:-11221062 None:intergenic
TTTATACCTATTCAGGCCTC+TGG 0.412686 8:+11221260 MsG0880042596.01.T01:intron
TAAGTACCTCCGCATCCGTC+GGG 0.423656 8:-11221439 None:intergenic
TGACAGTAACTTCTTCTTCT+GGG 0.426473 8:-11222322 None:intergenic
AGCTAAGTCGGGGTCAGAAT+GGG 0.431013 8:+11220154 MsG0880042596.01.T01:CDS
TGAAAGATGATCGTGGGAAT+CGG 0.435042 8:+11221000 MsG0880042596.01.T01:CDS
TGCGTTCTGGTCCTCACATA+GGG 0.441667 8:+11221370 MsG0880042596.01.T01:CDS
GTCCTACTTCCAAGGGATCC+AGG 0.448935 8:-11220215 None:intergenic
GGTTTCCCAACTGCCTCTCA+TGG 0.451422 8:-11221079 None:intergenic
TCGGAGCTTGTAGGTTTCAC+TGG 0.460462 8:+11222352 MsG0880042596.01.T01:three_prime_UTR
GTTGGACAGCCTGGATCCCT+TGG 0.462251 8:+11220206 MsG0880042596.01.T01:CDS
CCTTTGCAGTCCTACTTCCA+AGG 0.466945 8:-11220223 None:intergenic
CAGCTAAGTCGGGGTCAGAA+TGG 0.467971 8:+11220153 MsG0880042596.01.T01:CDS
TTGATGCCTGTACCTGGTGC+CGG 0.468596 8:+11221176 MsG0880042596.01.T01:CDS
TGATGCCTGTACCTGGTGCC+GGG 0.471237 8:+11221177 MsG0880042596.01.T01:CDS
CATGAAGAAACAGCTAAGTC+GGG 0.472186 8:+11220143 MsG0880042596.01.T01:CDS
GATAGGAGCGACAGAACAAA+TGG 0.472382 8:+11221032 MsG0880042596.01.T01:CDS
ATCGCAACTTCTGGTGGAGC+AGG 0.479254 8:-11221294 None:intergenic
TCCCACGATCATCTTTCAAT+CGG 0.481981 8:-11220995 None:intergenic
CCATCCCATGAGAGGCAGTT+GGG 0.495045 8:+11221074 MsG0880042596.01.T01:CDS
TCGTGGGAATCGGCGAGACC+AGG 0.497837 8:+11221010 MsG0880042596.01.T01:CDS
CCATCTTCGTATGATCCATC+AGG 0.498285 8:+11221339 MsG0880042596.01.T01:CDS
TATATTCCGATCCCACTTAG+TGG 0.503793 8:+11222650 MsG0880042596.01.T01:three_prime_UTR
GCATGAAGAAACAGCTAAGT+CGG 0.504054 8:+11220142 MsG0880042596.01.T01:CDS
ATGCGTTCTGGTCCTCACAT+AGG 0.506680 8:+11221369 MsG0880042596.01.T01:CDS
GGCATCAAAACTGGAGGAGG+GGG 0.507533 8:-11221161 None:intergenic
ATGCAGATGTTTAGGGATCA+AGG 0.515375 8:+11221315 MsG0880042596.01.T01:CDS
ATCTGCATCGCAACTTCTGG+TGG 0.515886 8:-11221300 None:intergenic
ACCAACCCGGCACCAGGTAC+AGG 0.516357 8:-11221182 None:intergenic
CTTTGCAGTCCTACTTCCAA+GGG 0.525262 8:-11220222 None:intergenic
CCCAACTGCCTCTCATGGGA+TGG 0.526209 8:-11221074 None:intergenic
TAACCTGAGTTAGTGATCAA+AGG 0.528372 8:+11220096 MsG0880042596.01.T01:intron
GAAACAATGTTCGATGCATA+TGG 0.530275 8:+11221107 MsG0880042596.01.T01:CDS
TTGGCTCATTGAGATTGGAT+TGG 0.531912 8:+11222376 MsG0880042596.01.T01:three_prime_UTR
TCTGGTGGAGCAGGAACAAA+GGG 0.532051 8:-11221285 None:intergenic
TTCCCGAGCAAAATGCTACC+TGG 0.532763 8:+11222515 MsG0880042596.01.T01:three_prime_UTR
ACAGGCATCAAAACTGGAGG+AGG 0.544938 8:-11221164 None:intergenic
ATATTCCGATCCCACTTAGT+GGG 0.545296 8:+11222651 MsG0880042596.01.T01:three_prime_UTR
GGAAACAACTAATCTCAAAC+CGG 0.546844 8:+11218307 MsG0880042596.01.T01:CDS
CCGTCGGGGATCAGGTCTAA+AGG 0.547560 8:-11221424 None:intergenic
GAACGCATCGTCATTCCTGA+TGG 0.548956 8:-11221354 None:intergenic
ATCAATCAAAACTACCTCCC+CGG 0.552557 8:+11222596 MsG0880042596.01.T01:three_prime_UTR
GACCTGATCCCCGACGGATG+CGG 0.552652 8:+11221430 MsG0880042596.01.T01:CDS
GTTTCCCAACTGCCTCTCAT+GGG 0.553750 8:-11221078 None:intergenic
AGAGAAACCAACCCGGCACC+AGG 0.556392 8:-11221188 None:intergenic
CCTGATGGATCATACGAAGA+TGG 0.561638 8:-11221339 None:intergenic
TTATACCTATTCAGGCCTCT+GGG 0.561914 8:+11221261 MsG0880042596.01.T01:intron
AGGACAAGCCTTTAAAGCGA+AGG 0.563691 8:+11220961 MsG0880042596.01.T01:intron
GCCATCCCATGAGAGGCAGT+TGG 0.567581 8:+11221073 MsG0880042596.01.T01:CDS
TTCTGGTGGAGCAGGAACAA+AGG 0.568203 8:-11221286 None:intergenic
TAAAATAAGATATAGCAGCC+AGG 0.569772 8:-11222533 None:intergenic
TGCTGCAGCAGCTGACATGT+TGG 0.575171 8:+11220256 MsG0880042596.01.T01:CDS
TACTGAGACCAGAAGGAGCA+AGG 0.577572 8:+11220120 MsG0880042596.01.T01:CDS
ATAAGTACCTCCGCATCCGT+CGG 0.578460 8:-11221440 None:intergenic
GGAATCGGCGAGACCAGGAT+AGG 0.578499 8:+11221015 MsG0880042596.01.T01:CDS
GTAATCTAGTTGTAATAATG+GGG 0.578512 8:+11222444 MsG0880042596.01.T01:three_prime_UTR
CATCGAACATTGTTTCATCA+CGG 0.580490 8:-11221100 None:intergenic
AAGTTACTGTCATAGACTAT+CGG 0.585625 8:+11222333 MsG0880042596.01.T01:exon
GCCGATTGAAAGATGATCGT+GGG 0.585756 8:+11220994 MsG0880042596.01.T01:CDS
TCTGAGTTGAATGATACAGC+AGG 0.589557 8:-11221134 None:intergenic
CGGGGATCAGGTCTAAAGGT+GGG 0.597507 8:-11221420 None:intergenic
TCGGGGATCAGGTCTAAAGG+TGG 0.610998 8:-11221421 None:intergenic
CTGATCCCCGACGGATGCGG+AGG 0.614753 8:+11221433 MsG0880042596.01.T01:CDS
CAGGCATCAAAACTGGAGGA+GGG 0.615388 8:-11221163 None:intergenic
AGCCTGGATCCCTTGGAAGT+AGG 0.617314 8:+11220213 MsG0880042596.01.T01:CDS
TATTCCGATCCCACTTAGTG+GGG 0.621115 8:+11222652 MsG0880042596.01.T01:three_prime_UTR
CAAAGGTTACTGAGACCAGA+AGG 0.622241 8:+11220113 MsG0880042596.01.T01:CDS
GTGGTGCAGTTATCAAGACT+TGG 0.626723 8:+11222296 MsG0880042596.01.T01:intron
CCTTGGAAGTAGGACTGCAA+AGG 0.633501 8:+11220223 MsG0880042596.01.T01:CDS
CCTTTAGACCTGATCCCCGA+CGG 0.633767 8:+11221424 MsG0880042596.01.T01:CDS
AAGTACCTCCGCATCCGTCG+GGG 0.635573 8:-11221438 None:intergenic
GGCCGATTGAAAGATGATCG+TGG 0.636197 8:+11220993 MsG0880042596.01.T01:CDS
ATAGTTCGCCATCCCATGAG+AGG 0.637985 8:+11221066 MsG0880042596.01.T01:CDS
TTAAAGCGAAGGTTACTGGA+AGG 0.638659 8:+11220972 MsG0880042596.01.T01:CDS
CGTTCTGGTCCTCACATAGG+GGG 0.645123 8:+11221372 MsG0880042596.01.T01:CDS
GCGTTCTGGTCCTCACATAG+GGG 0.645525 8:+11221371 MsG0880042596.01.T01:CDS
GGGAGGAACAGCAATCATAG+AGG 0.652456 8:-11221400 None:intergenic
AGGCATCAAAACTGGAGGAG+GGG 0.658058 8:-11221162 None:intergenic
TAATCTAGTTGTAATAATGG+GGG 0.662924 8:+11222445 MsG0880042596.01.T01:three_prime_UTR
ATTCCGATCCCACTTAGTGG+GGG 0.677008 8:+11222653 MsG0880042596.01.T01:three_prime_UTR
ACAATGTTCGATGCATATGG+TGG 0.677228 8:+11221110 MsG0880042596.01.T01:CDS
ATGAAGAAACAGCTAAGTCG+GGG 0.681698 8:+11220144 MsG0880042596.01.T01:CDS
GGATCAGGTCTAAAGGTGGG+AGG 0.688645 8:-11221417 None:intergenic
TGTTGTGGATAATCAAACCA+TGG 0.692952 8:+11222698 MsG0880042596.01.T01:three_prime_UTR
GCAGGAACAAAGGGTCCCAG+AGG 0.699153 8:-11221276 None:intergenic
GGTACAGGCATCAAAACTGG+AGG 0.702355 8:-11221167 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATAATTAAATAAA+AGG - Chr8:11219417-11219436 None:intergenic 0.0%
!! AAAAATAATTAAATAAAAGG+AGG - Chr8:11219414-11219433 None:intergenic 10.0%
!! AAAATAATTAAATAAAAGGA+GGG - Chr8:11219413-11219432 None:intergenic 10.0%
!! ATAAAACGATAAAAAATTAT+TGG + Chr8:11221612-11221631 MsG0880042596.01.T01:intron 10.0%
!! TAAAATACAATAAAATAACA+TGG - Chr8:11221850-11221869 None:intergenic 10.0%
!! TATAAACAAAAAAATTGATT+TGG - Chr8:11221506-11221525 None:intergenic 10.0%
!!! ATTTTTTCATTATTTTATGT+TGG - Chr8:11219231-11219250 None:intergenic 10.0%
!! AAAAAAAAATTAATGATGGT+GGG + Chr8:11218505-11218524 MsG0880042596.01.T01:intron 15.0%
!! ACATAAAAAATAGTATGATT+TGG - Chr8:11221786-11221805 None:intergenic 15.0%
!! AGACAAAAAAAAATTAATGA+TGG + Chr8:11218501-11218520 MsG0880042596.01.T01:intron 15.0%
!! TATATAATTTATACCTATTC+AGG + Chr8:11221253-11221272 MsG0880042596.01.T01:intron 15.0%
!! TCTAAAAATCACATAAAAAA+GGG - Chr8:11221810-11221829 None:intergenic 15.0%
!!! AGTGTTATTATTTAATTATG+TGG + Chr8:11219475-11219494 MsG0880042596.01.T01:intron 15.0%
!!! ATATTATTTCTCCTTATTTT+TGG + Chr8:11221570-11221589 MsG0880042596.01.T01:intron 15.0%
!!! GGTTTATACTATTTTTTAAT+TGG + Chr8:11221633-11221652 MsG0880042596.01.T01:intron 15.0%
!!! TTATTTTATTGTATTTTACC+TGG + Chr8:11221852-11221871 MsG0880042596.01.T01:intron 15.0%
!! AAAAGGAACATATATAAACA+AGG - Chr8:11221476-11221495 None:intergenic 20.0%
!! AAAGGAACATATATAAACAA+GGG - Chr8:11221475-11221494 None:intergenic 20.0%
!! AACCACTAAACAAAAATAAA+AGG - Chr8:11220486-11220505 None:intergenic 20.0%
!! ACAATCGAATAAAAAACATA+TGG + Chr8:11218409-11218428 MsG0880042596.01.T01:intron 20.0%
!! ACATTGAATCATAAAATAGA+AGG + Chr8:11218852-11218871 MsG0880042596.01.T01:intron 20.0%
!! ATAGAAAAGGATATAAATAG+AGG + Chr8:11219605-11219624 MsG0880042596.01.T01:intron 20.0%
!! ATCCATATGTTAGAAAATTA+GGG + Chr8:11220279-11220298 MsG0880042596.01.T01:CDS 20.0%
!! ATTATTAAAATAACATGTGG+TGG + Chr8:11222131-11222150 MsG0880042596.01.T01:intron 20.0%
!! ATTATTAGTGTAAGTAGAAT+TGG + Chr8:11219528-11219547 MsG0880042596.01.T01:intron 20.0%
!! CAAAAAAAAATTAATGATGG+TGG + Chr8:11218504-11218523 MsG0880042596.01.T01:intron 20.0%
!! CAATCGAATAAAAAACATAT+GGG + Chr8:11218410-11218429 MsG0880042596.01.T01:intron 20.0%
!! CTTCTAGATATAAAATTGTA+TGG - Chr8:11220630-11220649 None:intergenic 20.0%
!! TGGATTATTAAAATAACATG+TGG + Chr8:11222128-11222147 MsG0880042596.01.T01:intron 20.0%
!! TGTAATCTAGTTGTAATAAT+GGG + Chr8:11222443-11222462 MsG0880042596.01.T01:three_prime_UTR 20.0%
!! TGTAATTATTGCCAAAAATA+AGG - Chr8:11221584-11221603 None:intergenic 20.0%
!! TTATTAAAATAACATGTGGT+GGG + Chr8:11222132-11222151 MsG0880042596.01.T01:intron 20.0%
!!! ACCATTTTAATATCAAATGT+CGG - Chr8:11219983-11220002 None:intergenic 20.0%
!!! ACGATTTATTTCTCTTATTT+TGG - Chr8:11221696-11221715 None:intergenic 20.0%
!!! ATAAAGTTGATTGACATTTT+GGG + Chr8:11221918-11221937 MsG0880042596.01.T01:intron 20.0%
!!! ATTCTTTCTAAACCTATTTT+GGG - Chr8:11219587-11219606 None:intergenic 20.0%
!!! CTCTAAAAATCACATAAAAA+AGG - Chr8:11221811-11221830 None:intergenic 20.0%
!!! GATAATTATAATCAGTTTTG+AGG + Chr8:11219913-11219932 MsG0880042596.01.T01:intron 20.0%
!!! TAATTTTAGTCAACTATACT+CGG + Chr8:11222413-11222432 MsG0880042596.01.T01:three_prime_UTR 20.0%
!!! TATTCTTTCTAAACCTATTT+TGG - Chr8:11219588-11219607 None:intergenic 20.0%
!!! TCAATTTTATAAAACACATG+TGG + Chr8:11222108-11222127 MsG0880042596.01.T01:intron 20.0%
!!! TTGTGAGAATTTGATAATTA+GGG + Chr8:11219804-11219823 MsG0880042596.01.T01:intron 20.0%
!!! TTGTTTATATATGTTCCTTT+TGG + Chr8:11221475-11221494 MsG0880042596.01.T01:intron 20.0%
!!! TTTGTGAGAATTTGATAATT+AGG + Chr8:11219803-11219822 MsG0880042596.01.T01:intron 20.0%
! AAAACATATGGGTAATAGTA+CGG + Chr8:11218421-11218440 MsG0880042596.01.T01:intron 25.0%
! AAAATTAGGGATGAAAAGTA+TGG + Chr8:11220292-11220311 MsG0880042596.01.T01:CDS 25.0%
! AGGTTTAGAAAGAATAGAAA+AGG + Chr8:11219592-11219611 MsG0880042596.01.T01:intron 25.0%
! CAAAATGTCAATCAACTTTA+TGG - Chr8:11221919-11221938 None:intergenic 25.0%
! CAAATGGAACAAATTACAAA+TGG - Chr8:11218462-11218481 None:intergenic 25.0%
! CAACTCAATATGTTAGATAA+TGG - Chr8:11222223-11222242 None:intergenic 25.0%
! CTGTAATCTAGTTGTAATAA+TGG + Chr8:11222442-11222461 MsG0880042596.01.T01:three_prime_UTR 25.0%
! GAGTAAAAGATTATGCATAT+AGG - Chr8:11222009-11222028 None:intergenic 25.0%
! GATAGACACAAAAAAATAAG+TGG - Chr8:11218553-11218572 None:intergenic 25.0%
! GATCCATATGTTAGAAAATT+AGG + Chr8:11220278-11220297 MsG0880042596.01.T01:CDS 25.0%
! GATTCTTTATCATGTTGTAA+TGG - Chr8:11218661-11218680 None:intergenic 25.0%
! GTAATCTAGTTGTAATAATG+GGG + Chr8:11222444-11222463 MsG0880042596.01.T01:three_prime_UTR 25.0%
! TAATCTAGTTGTAATAATGG+GGG + Chr8:11222445-11222464 MsG0880042596.01.T01:three_prime_UTR 25.0%
! TGGAATTAACATCAAAATTG+CGG + Chr8:11220412-11220431 MsG0880042596.01.T01:intron 25.0%
! TTAAACTAATTTCCTAATCG+TGG + Chr8:11222277-11222296 MsG0880042596.01.T01:intron 25.0%
! TTCTAATGTTACAACATCTA+TGG - Chr8:11222492-11222511 None:intergenic 25.0%
!! ATCCCTAATTTTCTAACATA+TGG - Chr8:11220284-11220303 None:intergenic 25.0%
!!! AGCCTTTTATTTTTGTTTAG+TGG + Chr8:11220481-11220500 MsG0880042596.01.T01:intron 25.0%
!!! AGTATTTCTATTTTCTACTG+TGG + Chr8:11222155-11222174 MsG0880042596.01.T01:intron 25.0%
!!! CACATGTTTTGAAAACATTT+TGG + Chr8:11220694-11220713 MsG0880042596.01.T01:intron 25.0%
!!! CATAAAGTTGATTGACATTT+TGG + Chr8:11221917-11221936 MsG0880042596.01.T01:intron 25.0%
!!! CCATTTTAATATCAAATGTC+GGG - Chr8:11219982-11220001 None:intergenic 25.0%
!!! GAGAAAAAACTGATTCATTT+TGG + Chr8:11220176-11220195 MsG0880042596.01.T01:CDS 25.0%
!!! GTATTTTTTATGTTCCCTTT+TGG + Chr8:11221755-11221774 MsG0880042596.01.T01:intron 25.0%
!!! TCAATATGTTAGATAATGGA+TGG - Chr8:11222219-11222238 None:intergenic 25.0%
AAAAAGAATGTGTAAGGTAC+TGG + Chr8:11218332-11218351 MsG0880042596.01.T01:intron 30.0%
AAAAATACCCCATACAAACA+TGG - Chr8:11221743-11221762 None:intergenic 30.0%
AAACATATGGGTAATAGTAC+GGG + Chr8:11218422-11218441 MsG0880042596.01.T01:intron 30.0%
AAATATATGCTGCTGTCTAT+GGG + Chr8:11220815-11220834 MsG0880042596.01.T01:intron 30.0%
AAGATTATGCATATAGGCAA+AGG - Chr8:11222003-11222022 None:intergenic 30.0%
AAGTTACTGTCATAGACTAT+CGG + Chr8:11222333-11222352 MsG0880042596.01.T01:exon 30.0%
ACAAACCTTAGCTAATCATT+AGG + Chr8:11219888-11219907 MsG0880042596.01.T01:intron 30.0%
ATAGATTACATCTAACGTTG+GGG + Chr8:11219776-11219795 MsG0880042596.01.T01:intron 30.0%
ATCATGTTTATGTGAACTCT+AGG - Chr8:11219286-11219305 None:intergenic 30.0%
ATTAGTGTAAGTAGAATTGG+AGG + Chr8:11219531-11219550 MsG0880042596.01.T01:intron 30.0%
ATTTCTGCACAAAGTCATTA+TGG + Chr8:11220889-11220908 MsG0880042596.01.T01:intron 30.0%
CACATAAACATGATGAGTTA+TGG + Chr8:11219292-11219311 MsG0880042596.01.T01:intron 30.0%
CATAGATTACATCTAACGTT+GGG + Chr8:11219775-11219794 MsG0880042596.01.T01:intron 30.0%
CCCGACATTTGATATTAAAA+TGG + Chr8:11219979-11219998 MsG0880042596.01.T01:intron 30.0%
CTCTTCAATCTATACAATTG+AGG + Chr8:11221218-11221237 MsG0880042596.01.T01:intron 30.0%
GACACAAAAAAATAAGTGGT+AGG - Chr8:11218549-11218568 None:intergenic 30.0%
GACTTTGTGCAGAAATATAT+TGG - Chr8:11220885-11220904 None:intergenic 30.0%
GCTTGTAAAATCCTATATCA+AGG - Chr8:11220731-11220750 None:intergenic 30.0%
GGAATTAACATCAAAATTGC+GGG + Chr8:11220413-11220432 MsG0880042596.01.T01:intron 30.0%
TAAAATAAGATATAGCAGCC+AGG - Chr8:11222536-11222555 None:intergenic 30.0%
TCATAGATTACATCTAACGT+TGG + Chr8:11219774-11219793 MsG0880042596.01.T01:intron 30.0%
TCATGTTTATGTGAACTCTA+GGG - Chr8:11219285-11219304 None:intergenic 30.0%
TGGAACAAATTACAATTGAG+AGG + Chr8:11218593-11218612 MsG0880042596.01.T01:intron 30.0%
TTATATACCCCATACAAACA+TGG + Chr8:11221521-11221540 MsG0880042596.01.T01:intron 30.0%
TTTGAATATGCATAACACAG+TGG - Chr8:11218359-11218378 None:intergenic 30.0%
! ATCATCCTAATGATTAGCTA+AGG - Chr8:11219896-11219915 None:intergenic 30.0%
! ATGATTTGGAGATACCAAAA+GGG - Chr8:11221772-11221791 None:intergenic 30.0%
! TATGATTTGGAGATACCAAA+AGG - Chr8:11221773-11221792 None:intergenic 30.0%
! TGTTGATTATTCTGAGTTTG+AGG - Chr8:11219348-11219367 None:intergenic 30.0%
! TTCCACATATTCCAAAGTTT+TGG - Chr8:11218291-11218310 None:intergenic 30.0%
! TTGTTCCATTTGTTGCAATT+TGG + Chr8:11218470-11218489 MsG0880042596.01.T01:intron 30.0%
! TTGTTCCATTTGTTGCAATT+TGG - Chr8:11218489-11218470 None:intergenic 30.0%
!! ATTGATTTGGAGATACCAAA+AGG - Chr8:11221493-11221512 None:intergenic 30.0%
!! GTTCTATTGACTCTCTATAA+GGG + Chr8:11221714-11221733 MsG0880042596.01.T01:intron 30.0%
!! TTAAAATGGTATTGATCGTG+CGG + Chr8:11219993-11220012 MsG0880042596.01.T01:intron 30.0%
!! TTCCAAAACTTTGGAATATG+TGG + Chr8:11218286-11218305 MsG0880042596.01.T01:CDS 30.0%
!!! TTTTGGAACTGTTCTAACTT+GGG + Chr8:11221965-11221984 MsG0880042596.01.T01:intron 30.0%
AACATATGGGTAATAGTACG+GGG + Chr8:11218423-11218442 MsG0880042596.01.T01:intron 35.0%
AAGTAAAAGAGAAACCAACC+CGG - Chr8:11221198-11221217 None:intergenic 35.0%
AATATATGCTGCTGTCTATG+GGG + Chr8:11220816-11220835 MsG0880042596.01.T01:intron 35.0%
ACGGGTGACATATGTAAAAT+TGG + Chr8:11218631-11218650 MsG0880042596.01.T01:intron 35.0%
AGACAGCAGCATATATTTCA+AGG - Chr8:11220813-11220832 None:intergenic 35.0%
ATGACAGTAACTTCTTCTTC+TGG - Chr8:11222326-11222345 None:intergenic 35.0%
CAAAACCAAAACCATTCTAC+TGG - Chr8:11221950-11221969 None:intergenic 35.0%
CAAGAAAGAAGAAAGAAGAG+AGG + Chr8:11219690-11219709 MsG0880042596.01.T01:intron 35.0%
CATCGAACATTGTTTCATCA+CGG - Chr8:11221103-11221122 None:intergenic 35.0%
CGGGTGACATATGTAAAATT+GGG + Chr8:11218632-11218651 MsG0880042596.01.T01:intron 35.0%
CTCTCTTCTTTCTTCTTTCT+TGG - Chr8:11219692-11219711 None:intergenic 35.0%
CTTTCTTCCCTCTCTATTTA+AGG + Chr8:11220941-11220960 MsG0880042596.01.T01:intron 35.0%
GAAACAATGTTCGATGCATA+TGG + Chr8:11221107-11221126 MsG0880042596.01.T01:CDS 35.0%
GAAATATATGCTGCTGTCTA+TGG + Chr8:11220814-11220833 MsG0880042596.01.T01:intron 35.0%
GAGCATGATGTTTCACAATT+GGG + Chr8:11220843-11220862 MsG0880042596.01.T01:intron 35.0%
GATTTCTGCAAATTAAGGTG+AGG + Chr8:11219717-11219736 MsG0880042596.01.T01:intron 35.0%
GCACAAACTTTCCAAAACTT+TGG + Chr8:11218277-11218296 MsG0880042596.01.T01:CDS 35.0%
GGAAACAACTAATCTCAAAC+CGG + Chr8:11218307-11218326 MsG0880042596.01.T01:CDS 35.0%
GGAACAAATTACAAATGGAG+AGG - Chr8:11218457-11218476 None:intergenic 35.0%
GGAAGAAAGAAAATGGAGAA+TGG - Chr8:11220930-11220949 None:intergenic 35.0%
GGATATAAATAGAGGAAGCT+AGG + Chr8:11219613-11219632 MsG0880042596.01.T01:intron 35.0%
GTATGTGATTGACTGTTTAG+TGG + Chr8:11222249-11222268 MsG0880042596.01.T01:intron 35.0%
GTCAATCAACTTTATGGAAC+TGG - Chr8:11221913-11221932 None:intergenic 35.0%
TAACCTGAGTTAGTGATCAA+AGG + Chr8:11220096-11220115 MsG0880042596.01.T01:intron 35.0%
TAACCTTTGATCACTAACTC+AGG - Chr8:11220102-11220121 None:intergenic 35.0%
TAAGTTGTTGTGCCCAAAAT+AGG + Chr8:11219572-11219591 MsG0880042596.01.T01:intron 35.0%
TAGAGAGGGAAGAAAGAAAA+TGG - Chr8:11220937-11220956 None:intergenic 35.0%
TCAGTTTCACCTAATCTCAT+GGG - Chr8:11219943-11219962 None:intergenic 35.0%
TCTATACAATTGAGGTTTGC+TGG + Chr8:11221226-11221245 MsG0880042596.01.T01:intron 35.0%
TCTCTCCAAATTGCAACAAA+TGG + Chr8:11218573-11218592 MsG0880042596.01.T01:intron 35.0%
TCTCTCCAAATTGCAACAAA+TGG - Chr8:11218592-11218573 None:intergenic 35.0%
TCTCTTGTCTACCTTGATAT+AGG + Chr8:11220717-11220736 MsG0880042596.01.T01:intron 35.0%
TGACAGTAACTTCTTCTTCT+GGG - Chr8:11222325-11222344 None:intergenic 35.0%
TGTAACACGAAAGTTGAGTA+TGG + Chr8:11220029-11220048 MsG0880042596.01.T01:intron 35.0%
TGTTGTGGATAATCAAACCA+TGG + Chr8:11222698-11222717 MsG0880042596.01.T01:three_prime_UTR 35.0%
TTAATTCCAACACAAGCTCT+GGG - Chr8:11220401-11220420 None:intergenic 35.0%
TTCAGTTTCACCTAATCTCA+TGG - Chr8:11219944-11219963 None:intergenic 35.0%
TTTAGTGGTTATCTTGCAAG+TGG + Chr8:11220496-11220515 MsG0880042596.01.T01:intron 35.0%
! AAAAAGCTTTGTGCAACTCT+TGG - Chr8:11220337-11220356 None:intergenic 35.0%
! ACGAAAACCTTTTTCTGTTC+CGG - Chr8:11222618-11222637 None:intergenic 35.0%
! GAAAAGTATGGTTGGAAGTA+TGG + Chr8:11220304-11220323 MsG0880042596.01.T01:intron 35.0%
! TTAGGGATGAAAAGTATGGT+TGG + Chr8:11220296-11220315 MsG0880042596.01.T01:intron 35.0%
!! ACTGATTCATTTTGGCAGAA+AGG + Chr8:11220184-11220203 MsG0880042596.01.T01:CDS 35.0%
!! ATTCATTTTGGCAGAAAGGT+TGG + Chr8:11220188-11220207 MsG0880042596.01.T01:CDS 35.0%
!! CCTTACACATTCTTTTTCAC+CGG - Chr8:11218329-11218348 None:intergenic 35.0%
!! CGTTCTATTGACTCTCTATA+AGG + Chr8:11221713-11221732 MsG0880042596.01.T01:intron 35.0%
!! CGTTCTATTGACTCTCTATA+GGG - Chr8:11221732-11221713 None:intergenic 35.0%
!! CTTTGTTGTTGTTGTTGTTG+TGG + Chr8:11222683-11222702 MsG0880042596.01.T01:three_prime_UTR 35.0%
!! TCGTTCTATTGACTCTCTAT+AGG - Chr8:11221731-11221712 None:intergenic 35.0%
!!! CAGTAGAATGGTTTTGGTTT+TGG + Chr8:11221948-11221967 MsG0880042596.01.T01:intron 35.0%
!!! GTTTTGGAACTGTTCTAACT+TGG + Chr8:11221964-11221983 MsG0880042596.01.T01:intron 35.0%
AAGGGACACCATGTTTGTAT+GGG + Chr8:11221732-11221751 MsG0880042596.01.T01:intron 40.0%
AAGTTGCGATGCAGATGTTT+AGG + Chr8:11221307-11221326 MsG0880042596.01.T01:CDS 40.0%
ACAATGTTCGATGCATATGG+TGG + Chr8:11221110-11221129 MsG0880042596.01.T01:CDS 40.0%
ACATATGGGTAATAGTACGG+GGG + Chr8:11218424-11218443 MsG0880042596.01.T01:intron 40.0%
ACATATGTCACCCGTACTAT+GGG - Chr8:11218626-11218645 None:intergenic 40.0%
AGGATCTTAACCCATAGTAC+GGG + Chr8:11218613-11218632 MsG0880042596.01.T01:intron 40.0%
AGGCTTGTCCTTAAATAGAG+AGG - Chr8:11220952-11220971 None:intergenic 40.0%
AGTTGCGATGCAGATGTTTA+GGG + Chr8:11221308-11221327 MsG0880042596.01.T01:CDS 40.0%
ATAGGGACACCATGTTTGTA+TGG - Chr8:11221533-11221552 None:intergenic 40.0%
ATATGTCTGACAGACCAAAG+AGG - Chr8:11219203-11219222 None:intergenic 40.0%
ATATTCCGATCCCACTTAGT+GGG + Chr8:11222651-11222670 MsG0880042596.01.T01:three_prime_UTR 40.0%
ATCAATCAAAACTACCTCCC+CGG + Chr8:11222596-11222615 MsG0880042596.01.T01:three_prime_UTR 40.0%
ATGAAGAAACAGCTAAGTCG+GGG + Chr8:11220144-11220163 MsG0880042596.01.T01:CDS 40.0%
ATGCAGATGTTTAGGGATCA+AGG + Chr8:11221315-11221334 MsG0880042596.01.T01:CDS 40.0%
CATCAGGATCACTACAATGA+AGG - Chr8:11220551-11220570 None:intergenic 40.0%
CATGAAGAAACAGCTAAGTC+GGG + Chr8:11220143-11220162 MsG0880042596.01.T01:CDS 40.0%
CCGGTGAAAAAGAATGTGTA+AGG + Chr8:11218326-11218345 MsG0880042596.01.T01:intron 40.0%
GAGGATCTTAACCCATAGTA+CGG + Chr8:11218612-11218631 MsG0880042596.01.T01:intron 40.0%
GCATGAAGAAACAGCTAAGT+CGG + Chr8:11220142-11220161 MsG0880042596.01.T01:CDS 40.0%
GCTGCGATTTCTGCAAATTA+AGG + Chr8:11219712-11219731 MsG0880042596.01.T01:intron 40.0%
GGAGCATGATGTTTCACAAT+TGG + Chr8:11220842-11220861 MsG0880042596.01.T01:intron 40.0%
GGCTTGTCCTTAAATAGAGA+GGG - Chr8:11220951-11220970 None:intergenic 40.0%
GTTAATTCCAACACAAGCTC+TGG - Chr8:11220402-11220421 None:intergenic 40.0%
TAAGGGACACCATGTTTGTA+TGG + Chr8:11221731-11221750 MsG0880042596.01.T01:intron 40.0%
TACAAGCAACTTTGCAGATG+TGG + Chr8:11220744-11220763 MsG0880042596.01.T01:intron 40.0%
TACATATGTCACCCGTACTA+TGG - Chr8:11218627-11218646 None:intergenic 40.0%
TAGGGACACCATGTTTGTAT+GGG - Chr8:11221532-11221551 None:intergenic 40.0%
TATATTCCGATCCCACTTAG+TGG + Chr8:11222650-11222669 MsG0880042596.01.T01:three_prime_UTR 40.0%
TCCAGTAACCTTCGCTTTAA+AGG - Chr8:11220972-11220991 None:intergenic 40.0%
TCCCAAGAAAACATCTGATC+CGG + Chr8:11218947-11218966 MsG0880042596.01.T01:intron 40.0%
TCCCACGATCATCTTTCAAT+CGG - Chr8:11220998-11221017 None:intergenic 40.0%
TGAAAGATGATCGTGGGAAT+CGG + Chr8:11221000-11221019 MsG0880042596.01.T01:CDS 40.0%
TTAAAGCGAAGGTTACTGGA+AGG + Chr8:11220972-11220991 MsG0880042596.01.T01:CDS 40.0%
TTATACCTATTCAGGCCTCT+GGG + Chr8:11221261-11221280 MsG0880042596.01.T01:intron 40.0%
TTGGCTCATTGAGATTGGAT+TGG + Chr8:11222376-11222395 MsG0880042596.01.T01:three_prime_UTR 40.0%
TTGTGCGCTCTTTGTTAGAA+GGG - Chr8:11219128-11219147 None:intergenic 40.0%
TTTATACCTATTCAGGCCTC+TGG + Chr8:11221260-11221279 MsG0880042596.01.T01:intron 40.0%
! ACCGGATCAGATGTTTTCTT+GGG - Chr8:11218951-11218970 None:intergenic 40.0%
! ATTCTGAGTTTGAGGCAATG+TGG - Chr8:11219340-11219359 None:intergenic 40.0%
! CGAAAACCTTTTTCTGTTCC+GGG - Chr8:11222617-11222636 None:intergenic 40.0%
! GAAAACCTTTTTCTGTTCCG+GGG - Chr8:11222616-11222635 None:intergenic 40.0%
! GGAACAGAAAAAGGTTTTCG+TGG + Chr8:11222617-11222636 MsG0880042596.01.T01:three_prime_UTR 40.0%
! TCTGAGTTGAATGATACAGC+AGG - Chr8:11221137-11221156 None:intergenic 40.0%
! TTGATAACTGCACCACGATT+AGG - Chr8:11222292-11222311 None:intergenic 40.0%
!! GACAACGTACGTTCAAGTTT+TGG + Chr8:11219650-11219669 MsG0880042596.01.T01:intron 40.0%
!! GTTTATGTGAACTCTAGGGT+TGG - Chr8:11219281-11219300 None:intergenic 40.0%
AAAACACCCAGAGCTTGTGT+TGG + Chr8:11220392-11220411 MsG0880042596.01.T01:intron 45.0%
AACATCTGCATCGCAACTTC+TGG - Chr8:11221306-11221325 None:intergenic 45.0%
AACTAAGCAGCCGTATCATC+AGG - Chr8:11219012-11219031 None:intergenic 45.0%
AGGGACACCATGTTTGTATG+GGG + Chr8:11221733-11221752 MsG0880042596.01.T01:intron 45.0%
AGGGACACCATGTTTGTATG+GGG - Chr8:11221752-11221733 None:intergenic 45.0%
AGTGGTTATCTTGCAAGTGG+TGG + Chr8:11220499-11220518 MsG0880042596.01.T01:intron 45.0%
ATGACGTTTGTCTCACGTCA+TGG + Chr8:11220065-11220084 MsG0880042596.01.T01:intron 45.0%
CAAAGGTTACTGAGACCAGA+AGG + Chr8:11220113-11220132 MsG0880042596.01.T01:CDS 45.0%
CATAGACTATCGGAGCTTGT+AGG + Chr8:11222343-11222362 MsG0880042596.01.T01:exon 45.0%
CCATCTTCGTATGATCCATC+AGG + Chr8:11221339-11221358 MsG0880042596.01.T01:CDS 45.0%
CTCTTTGTTAGAAGGGGATG+CGG - Chr8:11219121-11219140 None:intergenic 45.0%
CTTTGCAGTCCTACTTCCAA+GGG - Chr8:11220225-11220244 None:intergenic 45.0%
GATAGGAGCGACAGAACAAA+TGG + Chr8:11221032-11221051 MsG0880042596.01.T01:CDS 45.0%
GCCGATTGAAAGATGATCGT+GGG + Chr8:11220994-11221013 MsG0880042596.01.T01:CDS 45.0%
GTGGTGCAGTTATCAAGACT+TGG + Chr8:11222296-11222315 MsG0880042596.01.T01:intron 45.0%
GTTGTGCGCTCTTTGTTAGA+AGG - Chr8:11219129-11219148 None:intergenic 45.0%
TATTCCGATCCCACTTAGTG+GGG + Chr8:11222652-11222671 MsG0880042596.01.T01:three_prime_UTR 45.0%
TGCAGCAATCTCAGGTAGAA+TGG + Chr8:11220592-11220611 MsG0880042596.01.T01:intron 45.0%
TGCATGCACTAAGCATTCTG+AGG - Chr8:11221878-11221897 None:intergenic 45.0%
TGGTAGGTCCTATCACTAAG+TGG - Chr8:11218533-11218552 None:intergenic 45.0%
TGTGCGCTCTTTGTTAGAAG+GGG - Chr8:11219127-11219146 None:intergenic 45.0%
! CACCGGATCAGATGTTTTCT+TGG - Chr8:11218952-11218971 None:intergenic 45.0%
! CCTGATGGATCATACGAAGA+TGG - Chr8:11221342-11221361 None:intergenic 45.0%
! GCTCTCCAGTAGAATGGTTT+TGG + Chr8:11221942-11221961 MsG0880042596.01.T01:intron 45.0%
! GCTTGTAGGTTTCACTGGTT+TGG + Chr8:11222357-11222376 MsG0880042596.01.T01:three_prime_UTR 45.0%
! TATGGTTGGAAGTATGGCTG+TGG + Chr8:11220310-11220329 MsG0880042596.01.T01:intron 45.0%
! TGAGGTTAGCCCATGAGATT+AGG + Chr8:11219931-11219950 MsG0880042596.01.T01:intron 45.0%
! TGATACGGCTGCTTAGTTTG+AGG + Chr8:11219014-11219033 MsG0880042596.01.T01:intron 45.0%
!! AGGACAAGCCTTTAAAGCGA+AGG + Chr8:11220961-11220980 MsG0880042596.01.T01:intron 45.0%
!! CTGGTTTGGCTCATTGAGAT+TGG + Chr8:11222371-11222390 MsG0880042596.01.T01:three_prime_UTR 45.0%
!! GCCTTTAAAGCGAAGGTTAC+TGG + Chr8:11220968-11220987 MsG0880042596.01.T01:CDS 45.0%
!! TGGTATTGATCGTGCGGAAT+TGG + Chr8:11219999-11220018 MsG0880042596.01.T01:intron 45.0%
!!! TTATATGTTTATTTTAATTA+TGG - Chr8:11218819-11218838 None:intergenic 5.0%
ACAGGCATCAAAACTGGAGG+AGG - Chr8:11221167-11221186 None:intergenic 50.0%
ACCTGAGATTGCTGCATGAC+AGG - Chr8:11220588-11220607 None:intergenic 50.0%
AGACGATGACCATGAGTGCA+TGG - Chr8:11219164-11219183 None:intergenic 50.0%
AGCTAAGTCGGGGTCAGAAT+GGG + Chr8:11220154-11220173 MsG0880042596.01.T01:CDS 50.0%
AGGCATCAAAACTGGAGGAG+GGG - Chr8:11221165-11221184 None:intergenic 50.0%
ATAAGTACCTCCGCATCCGT+CGG - Chr8:11221443-11221462 None:intergenic 50.0%
ATAGTTCGCCATCCCATGAG+AGG + Chr8:11221066-11221085 MsG0880042596.01.T01:CDS 50.0%
ATCCCACTTAGTGGGGGATA+AGG + Chr8:11222659-11222678 MsG0880042596.01.T01:three_prime_UTR 50.0%
ATCTGATCCGGTGCAAACTC+CGG + Chr8:11218959-11218978 MsG0880042596.01.T01:intron 50.0%
ATCTGCATCGCAACTTCTGG+TGG - Chr8:11221303-11221322 None:intergenic 50.0%
ATGCGTTCTGGTCCTCACAT+AGG + Chr8:11221369-11221388 MsG0880042596.01.T01:CDS 50.0%
ATTCCGATCCCACTTAGTGG+GGG + Chr8:11222653-11222672 MsG0880042596.01.T01:three_prime_UTR 50.0%
CAGGCATCAAAACTGGAGGA+GGG - Chr8:11221166-11221185 None:intergenic 50.0%
CCAGGTACAGGCATCAAAAC+TGG - Chr8:11221173-11221192 None:intergenic 50.0%
CCCTCATCCTCCTGATGATA+CGG + Chr8:11218999-11219018 MsG0880042596.01.T01:intron 50.0%
CCGTATCATCAGGAGGATGA+GGG - Chr8:11219002-11219021 None:intergenic 50.0%
CCTTGGAAGTAGGACTGCAA+AGG + Chr8:11220223-11220242 MsG0880042596.01.T01:CDS 50.0%
CCTTTGCAGTCCTACTTCCA+AGG - Chr8:11220226-11220245 None:intergenic 50.0%
GAACGCATCGTCATTCCTGA+TGG - Chr8:11221357-11221376 None:intergenic 50.0%
GACGATGACCATGAGTGCAT+GGG - Chr8:11219163-11219182 None:intergenic 50.0%
GACGTCAGTCCAAAACAAGC+AGG + Chr8:11218907-11218926 MsG0880042596.01.T01:intron 50.0%
GGCCGATTGAAAGATGATCG+TGG + Chr8:11220993-11221012 MsG0880042596.01.T01:CDS 50.0%
GGGAGGAACAGCAATCATAG+AGG - Chr8:11221403-11221422 None:intergenic 50.0%
GGTACAGGCATCAAAACTGG+AGG - Chr8:11221170-11221189 None:intergenic 50.0%
GGTGGGATCCACTTAGTGAT+AGG + Chr8:11218522-11218541 MsG0880042596.01.T01:intron 50.0%
GGTTATCTTGCAAGTGGTGG+TGG + Chr8:11220502-11220521 MsG0880042596.01.T01:intron 50.0%
GTTTCCCAACTGCCTCTCAT+GGG - Chr8:11221081-11221100 None:intergenic 50.0%
TAAGCAGCCGTATCATCAGG+AGG - Chr8:11219009-11219028 None:intergenic 50.0%
TACCTCCCCGGAACAGAAAA+AGG + Chr8:11222608-11222627 MsG0880042596.01.T01:three_prime_UTR 50.0%
TACTGAGACCAGAAGGAGCA+AGG + Chr8:11220120-11220139 MsG0880042596.01.T01:CDS 50.0%
TATCCCCCACTAAGTGGGAT+CGG - Chr8:11222659-11222678 None:intergenic 50.0%
TCAGGAATGACGATGCGTTC+TGG + Chr8:11221357-11221376 MsG0880042596.01.T01:CDS 50.0%
TCATGGGATGGCGAACTATC+AGG - Chr8:11221065-11221084 None:intergenic 50.0%
TCCCACTTAGTGGGGGATAA+GGG + Chr8:11222660-11222679 MsG0880042596.01.T01:three_prime_UTR 50.0%
TCGGAGCTTGTAGGTTTCAC+TGG + Chr8:11222352-11222371 MsG0880042596.01.T01:three_prime_UTR 50.0%
TCGTGTAGGGTCCACTATCT+GGG + Chr8:11219050-11219069 MsG0880042596.01.T01:intron 50.0%
TCTGGTGGAGCAGGAACAAA+GGG - Chr8:11221288-11221307 None:intergenic 50.0%
TCTTCATGCCTTGCTCCTTC+TGG - Chr8:11220131-11220150 None:intergenic 50.0%
TGCGTTCTGGTCCTCACATA+GGG + Chr8:11221370-11221389 MsG0880042596.01.T01:CDS 50.0%
TGTAGTGATCCTGATGCTCC+TGG + Chr8:11220555-11220574 MsG0880042596.01.T01:intron 50.0%
TTCCCGAGCAAAATGCTACC+TGG + Chr8:11222515-11222534 MsG0880042596.01.T01:three_prime_UTR 50.0%
TTCTGGTGGAGCAGGAACAA+AGG - Chr8:11221289-11221308 None:intergenic 50.0%
TTGGGTGCTCTCCAGTAGAA+TGG + Chr8:11221936-11221955 MsG0880042596.01.T01:intron 50.0%
TTGTTCTGTCGCTCCTATCC+TGG - Chr8:11221031-11221050 None:intergenic 50.0%
TTTGTTAGAAGGGGATGCGG+TGG - Chr8:11219118-11219137 None:intergenic 50.0%
! AACCTTTTTCTGTTCCGGGG+AGG - Chr8:11222613-11222632 None:intergenic 50.0%
! AGCCAGGTAGCATTTTGCTC+GGG - Chr8:11222520-11222539 None:intergenic 50.0%
! CAGCCAGGTAGCATTTTGCT+CGG - Chr8:11222521-11222540 None:intergenic 50.0%
! GATCTCTCGCCTGCTTGTTT+TGG - Chr8:11218919-11218938 None:intergenic 50.0%
!! CCAGTTTTGATGCCTGTACC+TGG + Chr8:11221170-11221189 MsG0880042596.01.T01:CDS 50.0%
!! GATCGTGCGGAATTGGTCTT+AGG + Chr8:11220006-11220025 MsG0880042596.01.T01:intron 50.0%
AGAGGGTTCGTCCCAGATAG+TGG - Chr8:11219064-11219083 None:intergenic 55.0%
AGCCCTTATCCCCCACTAAG+TGG - Chr8:11222665-11222684 None:intergenic 55.0%
AGCCTGGATCCCTTGGAAGT+AGG + Chr8:11220213-11220232 MsG0880042596.01.T01:CDS 55.0%
AGTGATCCTGATGCTCCTGG+TGG + Chr8:11220558-11220577 MsG0880042596.01.T01:intron 55.0%
ATCGCAACTTCTGGTGGAGC+AGG - Chr8:11221297-11221316 None:intergenic 55.0%
ATGCTGCTGTCTATGGGGCA+AGG + Chr8:11220821-11220840 MsG0880042596.01.T01:intron 55.0%
CAGCTAAGTCGGGGTCAGAA+TGG + Chr8:11220153-11220172 MsG0880042596.01.T01:CDS 55.0%
CCATCCCATGAGAGGCAGTT+GGG + Chr8:11221074-11221093 MsG0880042596.01.T01:CDS 55.0%
CCATGAGTGCATGGGCACAT+AGG - Chr8:11219155-11219174 None:intergenic 55.0%
CCTATGTGCCCATGCACTCA+TGG + Chr8:11219152-11219171 MsG0880042596.01.T01:intron 55.0%
CCTTTAGACCTGATCCCCGA+CGG + Chr8:11221424-11221443 MsG0880042596.01.T01:CDS 55.0%
CGGGGATCAGGTCTAAAGGT+GGG - Chr8:11221423-11221442 None:intergenic 55.0%
CGTTCTGGTCCTCACATAGG+GGG + Chr8:11221372-11221391 MsG0880042596.01.T01:CDS 55.0%
CTCCCTCGTGATGTCGTGTA+GGG + Chr8:11219037-11219056 MsG0880042596.01.T01:intron 55.0%
CTGACAGACCAAAGAGGCAG+AGG - Chr8:11219197-11219216 None:intergenic 55.0%
GACCCTACACGACATCACGA+GGG - Chr8:11219042-11219061 None:intergenic 55.0%
GACGATACCGGAGTTTGCAC+CGG - Chr8:11218969-11218988 None:intergenic 55.0%
GCCCTTATCCCCCACTAAGT+GGG - Chr8:11222664-11222683 None:intergenic 55.0%
GCCGTATCATCAGGAGGATG+AGG - Chr8:11219003-11219022 None:intergenic 55.0%
GCCTGTCATGCAGCAATCTC+AGG + Chr8:11220584-11220603 MsG0880042596.01.T01:intron 55.0%
GCGTTCTGGTCCTCACATAG+GGG + Chr8:11221371-11221390 MsG0880042596.01.T01:CDS 55.0%
GGATCAGGTCTAAAGGTGGG+AGG - Chr8:11221420-11221439 None:intergenic 55.0%
GGATGAGCAGCAGACGATAC+CGG - Chr8:11218981-11219000 None:intergenic 55.0%
GGCATCAAAACTGGAGGAGG+GGG - Chr8:11221164-11221183 None:intergenic 55.0%
GGTTTCCCAACTGCCTCTCA+TGG - Chr8:11221082-11221101 None:intergenic 55.0%
GTCCTACTTCCAAGGGATCC+AGG - Chr8:11220218-11220237 None:intergenic 55.0%
GTCGTGTAGGGTCCACTATC+TGG + Chr8:11219049-11219068 MsG0880042596.01.T01:intron 55.0%
TAAGTACCTCCGCATCCGTC+GGG - Chr8:11221442-11221461 None:intergenic 55.0%
TCGGGGATCAGGTCTAAAGG+TGG - Chr8:11221424-11221443 None:intergenic 55.0%
TGCTGCAGCAGCTGACATGT+TGG + Chr8:11220256-11220275 MsG0880042596.01.T01:CDS 55.0%
TTGATGCCTGTACCTGGTGC+CGG + Chr8:11221176-11221195 MsG0880042596.01.T01:CDS 55.0%
TTGTCGAGCCTCTGCCTCTT+TGG + Chr8:11219186-11219205 MsG0880042596.01.T01:intron 55.0%
!! GCACTAAGCATTCTGAGGCC+AGG - Chr8:11221873-11221892 None:intergenic 55.0%
AAGTACCTCCGCATCCGTCG+GGG - Chr8:11221441-11221460 None:intergenic 60.0%
AGAGAAACCAACCCGGCACC+AGG - Chr8:11221191-11221210 None:intergenic 60.0%
AGGGTCCCAGAGGCCTGAAT+AGG - Chr8:11221269-11221288 None:intergenic 60.0%
CCCAACTGCCTCTCATGGGA+TGG - Chr8:11221077-11221096 None:intergenic 60.0%
CCGTCGGGGATCAGGTCTAA+AGG - Chr8:11221427-11221446 None:intergenic 60.0%
GAGGCTTGTCCCCCTATGTG+AGG - Chr8:11221384-11221403 None:intergenic 60.0%
GAGTGCATGGGCACATAGGC+AGG - Chr8:11219151-11219170 None:intergenic 60.0%
GCAGGAACAAAGGGTCCCAG+AGG - Chr8:11221279-11221298 None:intergenic 60.0%
GCCATCCCATGAGAGGCAGT+TGG + Chr8:11221073-11221092 MsG0880042596.01.T01:CDS 60.0%
GCTCCCTCGTGATGTCGTGT+AGG + Chr8:11219036-11219055 MsG0880042596.01.T01:intron 60.0%
GGAATCGGCGAGACCAGGAT+AGG + Chr8:11221015-11221034 MsG0880042596.01.T01:CDS 60.0%
GGACCCTACACGACATCACG+AGG - Chr8:11219043-11219062 None:intergenic 60.0%
GGCAGAAAGGTTGGACAGCC+TGG + Chr8:11220197-11220216 MsG0880042596.01.T01:CDS 60.0%
GTTAGAAGGGGATGCGGTGG+CGG - Chr8:11219115-11219134 None:intergenic 60.0%
GTTGGACAGCCTGGATCCCT+TGG + Chr8:11220206-11220225 MsG0880042596.01.T01:CDS 60.0%
TGATGCCTGTACCTGGTGCC+GGG + Chr8:11221177-11221196 MsG0880042596.01.T01:CDS 60.0%
TGCATGACAGGCGTTCCACC+AGG - Chr8:11220576-11220595 None:intergenic 60.0%
ACCAACCCGGCACCAGGTAC+AGG - Chr8:11221185-11221204 None:intergenic 65.0%
GACCTGATCCCCGACGGATG+CGG + Chr8:11221430-11221449 MsG0880042596.01.T01:CDS 65.0%
TCGTGGGAATCGGCGAGACC+AGG + Chr8:11221010-11221029 MsG0880042596.01.T01:CDS 65.0%
! TGGCGGACGTAGGAATGGGG+GGG - Chr8:11219098-11219117 None:intergenic 65.0%
!! CGGTGGCGGACGTAGGAATG+GGG - Chr8:11219101-11219120 None:intergenic 65.0%
!! GCGGTGGCGGACGTAGGAAT+GGG - Chr8:11219102-11219121 None:intergenic 65.0%
!! GGCGTTCCACCAGGAGCATC+AGG - Chr8:11220567-11220586 None:intergenic 65.0%
!! GGTGGCGGACGTAGGAATGG+GGG - Chr8:11219100-11219119 None:intergenic 65.0%
!! GTGGCGGACGTAGGAATGGG+GGG - Chr8:11219099-11219118 None:intergenic 65.0%
!! TGCGGTGGCGGACGTAGGAA+TGG - Chr8:11219103-11219122 None:intergenic 65.0%
CTCCGCATCCGTCGGGGATC+AGG - Chr8:11221435-11221454 None:intergenic 70.0%
CTGATCCCCGACGGATGCGG+AGG + Chr8:11221433-11221452 MsG0880042596.01.T01:CDS 70.0%
GGCGGACGTAGGAATGGGGG+GGG - Chr8:11219097-11219116 None:intergenic 70.0%
GGGGGGGACGTCGTCTCAGA+GGG - Chr8:11219081-11219100 None:intergenic 70.0%
! GCCTGTACCTGGTGCCGGGT+TGG + Chr8:11221181-11221200 MsG0880042596.01.T01:intron 70.0%
GGGGGGGGACGTCGTCTCAG+AGG - Chr8:11219082-11219101 None:intergenic 75.0%
!! GGGGATGCGGTGGCGGACGT+AGG - Chr8:11219108-11219127 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 11218275 11222721 11218275 ID=MsG0880042596.01;Name=MsG0880042596.01
Chr8 mRNA 11218275 11222721 11218275 ID=MsG0880042596.01.T01;Parent=MsG0880042596.01;Name=MsG0880042596.01.T01;_AED=0.35;_eAED=0.48;_QI=0|0.5|0.6|0.8|1|1|5|374|243
Chr8 exon 11218275 11218342 11218275 ID=MsG0880042596.01.T01:exon:4618;Parent=MsG0880042596.01.T01
Chr8 exon 11220109 11220313 11220109 ID=MsG0880042596.01.T01:exon:4619;Parent=MsG0880042596.01.T01
Chr8 exon 11220963 11221198 11220963 ID=MsG0880042596.01.T01:exon:4620;Parent=MsG0880042596.01.T01
Chr8 exon 11221275 11221454 11221275 ID=MsG0880042596.01.T01:exon:4621;Parent=MsG0880042596.01.T01
Chr8 exon 11222305 11222721 11222305 ID=MsG0880042596.01.T01:exon:4622;Parent=MsG0880042596.01.T01
Chr8 CDS 11218275 11218342 11218275 ID=MsG0880042596.01.T01:cds;Parent=MsG0880042596.01.T01
Chr8 CDS 11220109 11220313 11220109 ID=MsG0880042596.01.T01:cds;Parent=MsG0880042596.01.T01
Chr8 CDS 11220963 11221198 11220963 ID=MsG0880042596.01.T01:cds;Parent=MsG0880042596.01.T01
Chr8 CDS 11221275 11221454 11221275 ID=MsG0880042596.01.T01:cds;Parent=MsG0880042596.01.T01
Chr8 CDS 11222305 11222347 11222305 ID=MsG0880042596.01.T01:cds;Parent=MsG0880042596.01.T01
Chr8 three_prime_UTR 11222348 11222721 11222348 ID=MsG0880042596.01.T01:three_prime_utr;Parent=MsG0880042596.01.T01
Gene Sequence

>MsG0880042596.01.T01

ATGCACAAACTTTCCAAAACTTTGGAATATGTGGAAACAACTAATCTCAAACCGGTGAAAAAGAATGTTGATCAAAGGTTACTGAGACCAGAAGGAGCAAGGCATGAAGAAACAGCTAAGTCGGGGTCAGAATGGGAGAAAAAACTGATTCATTTTGGCAGAAAGGTTGGACAGCCTGGATCCCTTGGAAGTAGGACTGCAAAGGAGAAGATAGATGCTGCAGCAGCTGACATGTTGGATCCATATGTTAGAAAATTAGGGATGAAAAGTATGGACAAGCCTTTAAAGCGAAGGTTACTGGAAGGCCGATTGAAAGATGATCGTGGGAATCGGCGAGACCAGGATAGGAGCGACAGAACAAATGGAGATAGACCTGATAGTTCGCCATCCCATGAGAGGCAGTTGGGAAACCGTGATGAAACAATGTTCGATGCATATGGTGGACCTGCTGTATCATTCAACTCAGATATGCCCCCTCCTCCAGTTTTGATGCCTGTACCTGGTGCCGGGCCTCTGGGACCCTTTGTTCCTGCTCCACCAGAAGTTGCGATGCAGATGTTTAGGGATCAAGGACCATCTTCGTATGATCCATCAGGAATGACGATGCGTTCTGGTCCTCACATAGGGGGACAAGCCTCTATGATTGCTGTTCCTCCCACCTTTAGACCTGATCCCCGACGGATGCGGAGTTATCAAGACTTGGATGCCCAGAAGAAGAAGTTACTGTCATAG
Protein sequence

>MsG0880042596.01.T01

MHKLSKTLEYVETTNLKPVKKNVDQRLLRPEGARHEETAKSGSEWEKKLIHFGRKVGQPGSLGSRTAKEKIDAAAADMLDPYVRKLGMKSMDKPLKRRLLEGRLKDDRGNRRDQDRSDRTNGDRPDSSPSHERQLGNRDETMFDAYGGPAVSFNSDMPPPPVLMPVPGAGPLGPFVPAPPEVAMQMFRDQGPSSYDPSGMTMRSGPHIGGQASMIAVPPTFRPDPRRMRSYQDLDAQKKKLLS*