Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042399.01.T02 | XP_013448606.1 | 91.925 | 161 | 13 | 0 | 1 | 161 | 232 | 392 | 2.90E-100 | 305 |
| MsG0880042399.01.T01 | XP_013448606.1 | 92.135 | 178 | 14 | 0 | 1 | 178 | 215 | 392 | 9.92E-112 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042399.01.T01 | A0A072U0F7 | 92.135 | 178 | 14 | 0 | 1 | 178 | 215 | 392 | 4.74e-112 | 335 |
| MsG0880042399.01.T02 | A0A072U0F7 | 91.925 | 161 | 13 | 0 | 1 | 161 | 232 | 392 | 1.39e-100 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048383.01 | MsG0880042399.01 | -0.819189 | 1.323751e-52 | 1.011602e-49 |
| MsG0080048968.01 | MsG0880042399.01 | -0.812382 | 4.359585e-51 | 2.767798e-48 |
| MsG0180000023.01 | MsG0880042399.01 | -0.800341 | 1.507925e-48 | 7.004363e-46 |
| MsG0180000144.01 | MsG0880042399.01 | -0.803546 | 3.310520e-49 | 1.668322e-46 |
| MsG0180000400.01 | MsG0880042399.01 | 0.850724 | 1.411022e-60 | 2.789764e-57 |
| MsG0180000611.01 | MsG0880042399.01 | -0.815592 | 8.544807e-52 | 5.916130e-49 |
| MsG0180001235.01 | MsG0880042399.01 | -0.808654 | 2.784403e-50 | 1.600981e-47 |
| MsG0180001599.01 | MsG0880042399.01 | -0.808491 | 3.017821e-50 | 1.727906e-47 |
| MsG0180002140.01 | MsG0880042399.01 | -0.806069 | 9.838914e-50 | 5.290267e-47 |
| MsG0180003181.01 | MsG0880042399.01 | -0.847622 | 1.029214e-59 | 1.840122e-56 |
| MsG0180003303.01 | MsG0880042399.01 | -0.814656 | 1.378797e-51 | 9.306074e-49 |
| MsG0180003379.01 | MsG0880042399.01 | -0.839592 | 1.445237e-57 | 2.005212e-54 |
| MsG0180003744.01 | MsG0880042399.01 | -0.820813 | 5.624209e-53 | 4.496814e-50 |
| MsG0180004016.01 | MsG0880042399.01 | -0.849482 | 3.142941e-60 | 5.966435e-57 |
| MsG0180004160.01 | MsG0880042399.01 | -0.822352 | 2.479841e-53 | 2.070646e-50 |
| MsG0180004437.01 | MsG0880042399.01 | -0.820226 | 7.669794e-53 | 6.033093e-50 |
| MsG0180004444.01 | MsG0880042399.01 | -0.814882 | 1.228194e-51 | 8.340146e-49 |
| MsG0180004645.01 | MsG0880042399.01 | -0.830744 | 2.471351e-55 | 2.627304e-52 |
| MsG0180004767.01 | MsG0880042399.01 | -0.800748 | 1.246231e-48 | 5.848434e-46 |
| MsG0180005049.01 | MsG0880042399.01 | -0.800820 | 1.204272e-48 | 5.661943e-46 |
| MsG0180005106.01 | MsG0880042399.01 | -0.850446 | 1.689522e-60 | 3.310402e-57 |
| MsG0180005787.01 | MsG0880042399.01 | -0.816986 | 4.167731e-52 | 2.997997e-49 |
| MsG0180006050.01 | MsG0880042399.01 | -0.819770 | 9.752150e-53 | 7.574996e-50 |
| MsG0280006367.01 | MsG0880042399.01 | -0.808428 | 3.113062e-50 | 1.779531e-47 |
| MsG0280006368.01 | MsG0880042399.01 | -0.842607 | 2.331784e-58 | 3.554332e-55 |
| MsG0780040424.01 | MsG0880042399.01 | -0.843251 | 1.572286e-58 | 2.445352e-55 |
| MsG0780040519.01 | MsG0880042399.01 | -0.828791 | 7.388162e-55 | 7.418788e-52 |
| MsG0780040569.01 | MsG0880042399.01 | -0.819325 | 1.232613e-52 | 9.454712e-50 |
| MsG0780040697.01 | MsG0880042399.01 | -0.801273 | 9.730371e-49 | 4.627688e-46 |
| MsG0780040742.01 | MsG0880042399.01 | -0.822187 | 2.708401e-53 | 2.250608e-50 |
| MsG0780041127.01 | MsG0880042399.01 | -0.803278 | 3.763015e-49 | 1.883203e-46 |
| MsG0780041268.01 | MsG0880042399.01 | -0.802505 | 5.435672e-49 | 2.667167e-46 |
| MsG0780041423.01 | MsG0880042399.01 | -0.809976 | 1.450046e-50 | 8.635521e-48 |
| MsG0780041482.01 | MsG0880042399.01 | -0.834855 | 2.354389e-56 | 2.829027e-53 |
| MsG0880042033.01 | MsG0880042399.01 | -0.826716 | 2.328228e-54 | 2.200748e-51 |
| MsG0880042206.01 | MsG0880042399.01 | -0.833716 | 4.545781e-56 | 5.278421e-53 |
| MsG0880042399.01 | MsG0880042596.01 | 0.807835 | 4.163610e-50 | 2.343086e-47 |
| MsG0880042399.01 | MsG0880042795.01 | -0.802873 | 4.562862e-49 | 2.260041e-46 |
| MsG0880042399.01 | MsG0880043162.01 | -0.826238 | 3.027587e-54 | 2.823193e-51 |
| MsG0880042399.01 | MsG0880043194.01 | -0.850547 | 1.582937e-60 | 3.111652e-57 |
| MsG0880042399.01 | MsG0880045165.01 | -0.815131 | 1.081958e-51 | 7.396605e-49 |
| MsG0880042399.01 | MsG0880045329.01 | -0.837320 | 5.573332e-57 | 7.212825e-54 |
| MsG0880042399.01 | MsG0880045399.01 | -0.823840 | 1.115451e-53 | 9.714503e-51 |
| MsG0880042399.01 | MsG0880045408.01 | -0.825698 | 4.068253e-54 | 3.735770e-51 |
| MsG0880042399.01 | MsG0880045422.01 | -0.807996 | 3.846507e-50 | 2.173910e-47 |
| MsG0880042399.01 | MsG0880045480.01 | 0.842201 | 2.987404e-58 | 4.495710e-55 |
| MsG0880042399.01 | MsG0880045656.01 | -0.837882 | 3.999244e-57 | 5.266626e-54 |
| MsG0880042399.01 | MsG0880045705.01 | 0.811093 | 8.318652e-51 | 5.102652e-48 |
| MsG0880042399.01 | MsG0880045914.01 | -0.801088 | 1.062029e-48 | 5.027539e-46 |
| MsG0880042399.01 | MsG0880045951.01 | -0.807327 | 5.336054e-50 | 2.963594e-47 |
| MsG0880042399.01 | MsG0880046068.01 | -0.840638 | 7.706131e-58 | 1.104516e-54 |
| MsG0880042399.01 | MsG0880046348.01 | 0.817884 | 2.616137e-52 | 1.928619e-49 |
| MsG0880042399.01 | MsG0880046517.01 | -0.813933 | 1.991723e-51 | 1.318189e-48 |
| MsG0880042399.01 | MsG0880046684.01 | -0.827424 | 1.576437e-54 | 1.521372e-51 |
| MsG0880042399.01 | MsG0880047328.01 | 0.822447 | 2.357680e-53 | 1.973932e-50 |
| MsG0280011287.01 | MsG0880042399.01 | -0.801747 | 7.782526e-49 | 3.745700e-46 |
| MsG0380011614.01 | MsG0880042399.01 | -0.806767 | 7.011781e-50 | 3.837943e-47 |
| MsG0380013579.01 | MsG0880042399.01 | -0.802823 | 4.671553e-49 | 2.311124e-46 |
| MsG0680031000.01 | MsG0880042399.01 | -0.800331 | 1.515103e-48 | 7.035847e-46 |
| MsG0680031051.01 | MsG0880042399.01 | -0.825239 | 5.223506e-54 | 4.734386e-51 |
| MsG0680031063.01 | MsG0880042399.01 | -0.828169 | 1.044129e-54 | 1.029728e-51 |
| MsG0680031194.01 | MsG0880042399.01 | 0.809598 | 1.748406e-50 | 1.030959e-47 |
| MsG0680031301.01 | MsG0880042399.01 | -0.801602 | 8.335210e-49 | 3.996824e-46 |
| MsG0680031536.01 | MsG0880042399.01 | -0.821419 | 4.077671e-53 | 3.315762e-50 |
| MsG0680031654.01 | MsG0880042399.01 | -0.800434 | 1.443907e-48 | 6.722613e-46 |
| MsG0680031805.01 | MsG0880042399.01 | 0.800817 | 1.206312e-48 | 5.670968e-46 |
| MsG0680032075.01 | MsG0880042399.01 | -0.809328 | 1.997521e-50 | 1.169406e-47 |
| MsG0680033926.01 | MsG0880042399.01 | -0.805357 | 1.388096e-49 | 7.328597e-47 |
| MsG0680034476.01 | MsG0880042399.01 | -0.813752 | 2.183690e-51 | 1.438174e-48 |
| MsG0480018479.01 | MsG0880042399.01 | -0.801738 | 7.813209e-49 | 3.759555e-46 |
| MsG0480019256.01 | MsG0880042399.01 | -0.804893 | 1.735690e-49 | 9.056069e-47 |
| MsG0480019445.01 | MsG0880042399.01 | -0.805597 | 1.235915e-49 | 6.565365e-47 |
| MsG0480019984.01 | MsG0880042399.01 | 0.833778 | 4.385700e-56 | 5.102536e-53 |
| MsG0480020719.01 | MsG0880042399.01 | -0.813039 | 3.131081e-51 | 2.022675e-48 |
| MsG0480021432.01 | MsG0880042399.01 | -0.826996 | 1.996281e-54 | 1.902467e-51 |
| MsG0480021735.01 | MsG0880042399.01 | -0.818156 | 2.270886e-52 | 1.686643e-49 |
| MsG0480021876.01 | MsG0880042399.01 | 0.857835 | 1.244956e-62 | 3.113844e-59 |
| MsG0480021986.01 | MsG0880042399.01 | -0.842586 | 2.362996e-58 | 3.599431e-55 |
| MsG0480022104.01 | MsG0880042399.01 | -0.801410 | 9.123282e-49 | 4.353806e-46 |
| MsG0480022108.01 | MsG0880042399.01 | -0.800578 | 1.349831e-48 | 6.307452e-46 |
| MsG0480022228.01 | MsG0880042399.01 | -0.809401 | 1.926753e-50 | 1.130179e-47 |
| MsG0480022672.01 | MsG0880042399.01 | -0.822428 | 2.381626e-53 | 1.992968e-50 |
| MsG0480022897.01 | MsG0880042399.01 | -0.819359 | 1.210816e-52 | 9.296313e-50 |
| MsG0480023136.01 | MsG0880042399.01 | 0.806762 | 7.028987e-50 | 3.846819e-47 |
| MsG0480023240.01 | MsG0880042399.01 | -0.867077 | 1.785080e-65 | 6.152546e-62 |
| MsG0480023377.01 | MsG0880042399.01 | -0.805045 | 1.613489e-49 | 8.450375e-47 |
| MsG0480023387.01 | MsG0880042399.01 | -0.826748 | 2.288276e-54 | 2.164977e-51 |
| MsG0480023841.01 | MsG0880042399.01 | 0.894683 | 1.958097e-75 | 1.967089e-71 |
| MsG0580024191.01 | MsG0880042399.01 | -0.826430 | 2.724018e-54 | 2.554177e-51 |
| MsG0580024311.01 | MsG0880042399.01 | -0.804007 | 2.655789e-49 | 1.354281e-46 |
| MsG0580024339.01 | MsG0880042399.01 | -0.802013 | 6.860564e-49 | 3.324440e-46 |
| MsG0580024581.01 | MsG0880042399.01 | -0.807915 | 4.002951e-50 | 2.257333e-47 |
| MsG0580025520.01 | MsG0880042399.01 | -0.825373 | 4.855990e-54 | 4.417828e-51 |
| MsG0580025922.01 | MsG0880042399.01 | -0.803293 | 3.736348e-49 | 1.870551e-46 |
| MsG0380015118.01 | MsG0880042399.01 | -0.831320 | 1.784996e-55 | 1.930202e-52 |
| MsG0380015186.01 | MsG0880042399.01 | -0.813439 | 2.558897e-51 | 1.671134e-48 |
| MsG0380015220.01 | MsG0880042399.01 | -0.818793 | 1.628670e-52 | 1.231085e-49 |
| MsG0380015289.01 | MsG0880042399.01 | -0.817010 | 4.116046e-52 | 2.962725e-49 |
| MsG0380015598.01 | MsG0880042399.01 | 0.824434 | 8.088081e-54 | 7.162891e-51 |
| MsG0380015607.01 | MsG0880042399.01 | -0.860642 | 1.791089e-63 | 4.930521e-60 |
| MsG0380016117.01 | MsG0880042399.01 | -0.833682 | 4.634036e-56 | 5.375557e-53 |
| MsG0380016178.01 | MsG0880042399.01 | 0.800496 | 1.402703e-48 | 6.540890e-46 |
| MsG0380017210.01 | MsG0880042399.01 | -0.813181 | 2.914877e-51 | 1.890142e-48 |
| MsG0380017229.01 | MsG0880042399.01 | -0.825510 | 4.508049e-54 | 4.117250e-51 |
| MsG0380017279.01 | MsG0880042399.01 | -0.801753 | 7.760839e-49 | 3.735733e-46 |
| MsG0380017433.01 | MsG0880042399.01 | -0.815138 | 1.077901e-51 | 7.370222e-49 |
| MsG0380017476.01 | MsG0880042399.01 | -0.842179 | 3.028971e-58 | 4.554939e-55 |
| MsG0380017511.01 | MsG0880042399.01 | -0.816250 | 6.092640e-52 | 4.295117e-49 |
| MsG0380017512.01 | MsG0880042399.01 | -0.819690 | 1.017449e-52 | 7.884595e-50 |
| MsG0380017719.01 | MsG0880042399.01 | -0.826090 | 3.282737e-54 | 3.048147e-51 |
| MsG0380017797.01 | MsG0880042399.01 | -0.840964 | 6.332739e-58 | 9.168598e-55 |
| MsG0380018033.01 | MsG0880042399.01 | -0.806515 | 7.923764e-50 | 4.309290e-47 |
| MsG0480018292.01 | MsG0880042399.01 | -0.850301 | 1.854640e-60 | 3.616729e-57 |
| MsG0580028094.01 | MsG0880042399.01 | -0.813676 | 2.269203e-51 | 1.491498e-48 |
| MsG0580028526.01 | MsG0880042399.01 | -0.837734 | 4.364033e-57 | 5.721396e-54 |
| MsG0580028597.01 | MsG0880042399.01 | -0.832532 | 8.960872e-56 | 1.004365e-52 |
| MsG0580028664.01 | MsG0880042399.01 | 0.848631 | 5.419772e-60 | 1.000769e-56 |
| MsG0580029231.01 | MsG0880042399.01 | -0.817750 | 2.804126e-52 | 2.059786e-49 |
| MsG0580029550.01 | MsG0880042399.01 | -0.804602 | 1.996160e-49 | 1.033593e-46 |
| MsG0580029628.01 | MsG0880042399.01 | -0.845844 | 3.152092e-59 | 5.322933e-56 |
| MsG0580029801.01 | MsG0880042399.01 | -0.852889 | 3.431621e-61 | 7.278085e-58 |
| MsG0580029919.01 | MsG0880042399.01 | -0.821383 | 4.158293e-53 | 3.377712e-50 |
| MsG0580030003.01 | MsG0880042399.01 | -0.817677 | 2.912575e-52 | 2.135024e-49 |
| MsG0580030100.01 | MsG0880042399.01 | -0.807861 | 4.110044e-50 | 2.314490e-47 |
| MsG0280006519.01 | MsG0880042399.01 | -0.842481 | 2.519500e-58 | 3.825636e-55 |
| MsG0280006679.01 | MsG0880042399.01 | -0.837367 | 5.420427e-57 | 7.025198e-54 |
| MsG0280006682.01 | MsG0880042399.01 | -0.855830 | 4.848036e-62 | 1.133955e-58 |
| MsG0280006892.01 | MsG0880042399.01 | -0.827694 | 1.358277e-54 | 1.320974e-51 |
| MsG0280006935.01 | MsG0880042399.01 | -0.805756 | 1.145009e-49 | 6.107749e-47 |
| MsG0280007775.01 | MsG0880042399.01 | -0.812320 | 4.499261e-51 | 2.851697e-48 |
| MsG0280007847.01 | MsG0880042399.01 | -0.810711 | 1.006477e-50 | 6.111391e-48 |
| MsG0280008234.01 | MsG0880042399.01 | -0.804595 | 2.003057e-49 | 1.036963e-46 |
| MsG0280008758.01 | MsG0880042399.01 | -0.812438 | 4.238739e-51 | 2.695304e-48 |
| MsG0280009554.01 | MsG0880042399.01 | -0.842998 | 1.835272e-58 | 2.831415e-55 |
| MsG0280009676.01 | MsG0880042399.01 | 0.804678 | 1.924629e-49 | 9.985240e-47 |
| MsG0280010185.01 | MsG0880042399.01 | -0.814863 | 1.240532e-51 | 8.419450e-49 |
| MsG0280010547.01 | MsG0880042399.01 | -0.800169 | 1.634504e-48 | 7.558822e-46 |
| MsG0780035937.01 | MsG0880042399.01 | -0.817463 | 3.254893e-52 | 2.372120e-49 |
| MsG0780036186.01 | MsG0880042399.01 | -0.808079 | 3.693897e-50 | 2.092195e-47 |
| MsG0780036247.01 | MsG0880042399.01 | 0.811468 | 6.896275e-51 | 4.272265e-48 |
| MsG0780036544.01 | MsG0880042399.01 | 0.823200 | 1.574310e-53 | 1.346439e-50 |
| MsG0780036716.01 | MsG0880042399.01 | -0.816852 | 4.466156e-52 | 3.200744e-49 |
| MsG0780036845.01 | MsG0880042399.01 | -0.851038 | 1.151334e-60 | 2.300135e-57 |
| MsG0780039340.01 | MsG0880042399.01 | -0.805599 | 1.234781e-49 | 6.559659e-47 |
| MsG0780039587.01 | MsG0880042399.01 | -0.814877 | 1.231357e-51 | 8.360406e-49 |
| MsG0780039943.01 | MsG0880042399.01 | -0.804049 | 2.603460e-49 | 1.329011e-46 |
| MsG0780040070.01 | MsG0880042399.01 | -0.800829 | 1.199191e-48 | 5.639441e-46 |
| MsG0780040125.01 | MsG0880042399.01 | -0.815998 | 6.934232e-52 | 4.854788e-49 |
| MsG0780040182.01 | MsG0880042399.01 | -0.831211 | 1.898271e-55 | 2.046050e-52 |
| MsG0780040190.01 | MsG0880042399.01 | -0.845640 | 3.580823e-59 | 6.006450e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042399.01.T02 | MTR_7g056183 | 91.925 | 161 | 13 | 0 | 1 | 161 | 232 | 392 | 3.52e-104 | 305 |
| MsG0880042399.01.T02 | MTR_7g066710 | 93.506 | 154 | 10 | 0 | 1 | 154 | 233 | 386 | 8.23e-101 | 297 |
| MsG0880042399.01.T01 | MTR_7g056183 | 92.135 | 178 | 14 | 0 | 1 | 178 | 215 | 392 | 1.20e-115 | 335 |
| MsG0880042399.01.T01 | MTR_7g066710 | 93.567 | 171 | 11 | 0 | 1 | 171 | 216 | 386 | 2.75e-112 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTAACCCATTAATGAATT+TGG | 0.140474 | 8:-8174726 | None:intergenic |
| GGGTAATTTCCTTGAAAATT+TGG | 0.153373 | 8:-8174768 | None:intergenic |
| TGCCTGCTGCATTCCAGGGC+TGG | 0.207422 | 8:-8174791 | None:intergenic |
| CAGCATTGGGTTTGGGTGTG+GGG | 0.211301 | 8:-8174589 | None:intergenic |
| CCTTGAAAATTTGGGCCATT+TGG | 0.235231 | 8:-8174759 | None:intergenic |
| TTCAGCATTGGGTTTGGGTG+TGG | 0.242330 | 8:-8174591 | None:intergenic |
| GCCTGCTGCATTCCAGGGCT+GGG | 0.247983 | 8:-8174790 | None:intergenic |
| GGAACATTGGTGGGTTGTGC+AGG | 0.262651 | 8:-8174567 | None:intergenic |
| TGGAGACCCAAATTCATTAA+TGG | 0.271048 | 8:+8174719 | MsG0880042399.01.T01:CDS |
| GTGGGTTCAGCATTGGGTTT+GGG | 0.273827 | 8:-8174596 | None:intergenic |
| AGGAATGCCTGCTGCATTCC+AGG | 0.284694 | 8:-8174796 | None:intergenic |
| TCAGCATTGGGTTTGGGTGT+GGG | 0.290806 | 8:-8174590 | None:intergenic |
| CTTGAAAATTTGGGCCATTT+GGG | 0.292117 | 8:-8174758 | None:intergenic |
| GGCGGAGGTGGTGGTGGTGG+CGG | 0.295473 | 8:-8174900 | None:intergenic |
| GGTGGGTTCAGCATTGGGTT+TGG | 0.296312 | 8:-8174597 | None:intergenic |
| GGTAATTTCCTTGAAAATTT+GGG | 0.316309 | 8:-8174767 | None:intergenic |
| GGTGGTGGTGGTGGCGGGAG+AGG | 0.329052 | 8:-8174894 | None:intergenic |
| ATGGTTGAGCTCGGTCTTGC+GGG | 0.329657 | 8:-8174644 | None:intergenic |
| GTGGGCGGAGGTGGTGGTGG+TGG | 0.349989 | 8:-8174903 | None:intergenic |
| GGTAACCCATTAATGAATTT+GGG | 0.353294 | 8:-8174725 | None:intergenic |
| AAGGGATTCTAAAGGTATAT+TGG | 0.360516 | 8:+8174857 | MsG0880042399.01.T01:CDS |
| GCGGAGGTGGTGGTGGTGGC+GGG | 0.366755 | 8:-8174899 | None:intergenic |
| GGTTGTGCAGGGTGCATTGT+TGG | 0.367244 | 8:-8174555 | None:intergenic |
| TGAGCTCGGTCTTGCGGGAA+AGG | 0.367370 | 8:-8174639 | None:intergenic |
| GGAGACCCAAATTCATTAAT+GGG | 0.371180 | 8:+8174720 | MsG0880042399.01.T01:CDS |
| GCACAGGTGGGTTCAGCATT+GGG | 0.376338 | 8:-8174602 | None:intergenic |
| TCATAGGGAGCAGCATAAAA+TGG | 0.377461 | 8:-8174663 | None:intergenic |
| TACTCAGGAAATGAGTTATC+TGG | 0.380101 | 8:-8174531 | None:intergenic |
| CAACATGTGGGCGGAGGTGG+TGG | 0.382455 | 8:-8174909 | None:intergenic |
| TGGTGGTGGCGGGAGAGGCA+TGG | 0.384652 | 8:-8174889 | None:intergenic |
| GGCCATTTGGGACACCTTGT+GGG | 0.394238 | 8:-8174746 | None:intergenic |
| CATGTGGGCGGAGGTGGTGG+TGG | 0.396000 | 8:-8174906 | None:intergenic |
| GGTGGTGGCGGGAGAGGCAT+GGG | 0.397055 | 8:-8174888 | None:intergenic |
| CAGGACTCGTCTTCTGATAT+TGG | 0.415458 | 8:+8174696 | MsG0880042399.01.T01:CDS |
| CCTGCTGCATTCCAGGGCTG+GGG | 0.417288 | 8:-8174789 | None:intergenic |
| CCACCTTGTCCTTGTTCAAA+AGG | 0.417893 | 8:-8174816 | None:intergenic |
| GAGCTCGGTCTTGCGGGAAA+GGG | 0.418923 | 8:-8174638 | None:intergenic |
| GTCCTGCCTAGGCATATCAT+AGG | 0.422973 | 8:-8174679 | None:intergenic |
| GTGGTATGGCTGTGGATCCA+AGG | 0.425473 | 8:+8174838 | MsG0880042399.01.T01:CDS |
| GGCACAGGTGGGTTCAGCAT+TGG | 0.438653 | 8:-8174603 | None:intergenic |
| TTTCAACATGTGGGCGGAGG+TGG | 0.446334 | 8:-8174912 | None:intergenic |
| GCTGCATGTCGAAACTTTGC+TGG | 0.447803 | 8:-8174455 | None:intergenic |
| GGCGGGAGAGGCATGGGCTG+TGG | 0.452263 | 8:-8174882 | None:intergenic |
| GGGCCATTTGGGACACCTTG+TGG | 0.461980 | 8:-8174747 | None:intergenic |
| AATATACCTTTAGAATCCCT+TGG | 0.464167 | 8:-8174855 | None:intergenic |
| CCCCAGCCCTGGAATGCAGC+AGG | 0.472725 | 8:+8174789 | MsG0880042399.01.T01:CDS |
| AGCTCGGTCTTGCGGGAAAG+GGG | 0.473849 | 8:-8174637 | None:intergenic |
| CTCCCTTCAGATTCGATGAC+TGG | 0.474571 | 8:+8174402 | MsG0880042399.01.T01:CDS |
| TTCTGTCGGAGGTATGCAGC+AGG | 0.474582 | 8:+8174425 | MsG0880042399.01.T01:CDS |
| CTGAACCCACCTGTGCCATT+TGG | 0.475075 | 8:+8174609 | MsG0880042399.01.T01:CDS |
| GAACATTGGTGGGTTGTGCA+GGG | 0.476226 | 8:-8174566 | None:intergenic |
| CTGCTGCATTCCAGGGCTGG+GGG | 0.483882 | 8:-8174788 | None:intergenic |
| TGCTTGTCGGTAAACTGAAA+AGG | 0.484454 | 8:-8174495 | None:intergenic |
| AGCATTGGGTTTGGGTGTGG+GGG | 0.486521 | 8:-8174588 | None:intergenic |
| TGGTTTCAACATGTGGGCGG+AGG | 0.504759 | 8:-8174915 | None:intergenic |
| ACCAACTGATTGCTGCTTGT+CGG | 0.505779 | 8:-8174508 | None:intergenic |
| TAAACTGAAAAGGTTCTTGT+GGG | 0.518389 | 8:-8174485 | None:intergenic |
| GGGTGCATTGTTGGATACTC+AGG | 0.520311 | 8:-8174546 | None:intergenic |
| TCCCTATGATATGCCTAGGC+AGG | 0.521544 | 8:+8174677 | MsG0880042399.01.T01:CDS |
| TACCCACAAGGTGTCCCAAA+TGG | 0.522614 | 8:+8174744 | MsG0880042399.01.T01:CDS |
| AGTAGTTTGGTTTCAACATG+TGG | 0.526098 | 8:-8174922 | None:intergenic |
| GGATAACCAAATGGCACAGG+TGG | 0.535200 | 8:-8174615 | None:intergenic |
| AATGGTTGAGCTCGGTCTTG+CGG | 0.535415 | 8:-8174645 | None:intergenic |
| GACTCGTCTTCTGATATTGG+TGG | 0.536749 | 8:+8174699 | MsG0880042399.01.T01:CDS |
| CTGCTCCCTATGATATGCCT+AGG | 0.547789 | 8:+8174673 | MsG0880042399.01.T01:CDS |
| GGAATGCCTGCTGCATTCCA+GGG | 0.556867 | 8:-8174795 | None:intergenic |
| AATCTGAAGGGAGATGTTGT+TGG | 0.562250 | 8:-8174392 | None:intergenic |
| TGGTATGGCTGTGGATCCAA+GGG | 0.562473 | 8:+8174839 | MsG0880042399.01.T01:CDS |
| ACAAGGTGGTGGTATGGCTG+TGG | 0.564383 | 8:+8174830 | MsG0880042399.01.T01:CDS |
| GATTCGATGACTGGTTCTGT+CGG | 0.572719 | 8:+8174411 | MsG0880042399.01.T01:CDS |
| ACCGACAAGCAGCAATCAGT+TGG | 0.574383 | 8:+8174507 | MsG0880042399.01.T01:CDS |
| TCAGAAGACGAGTCCTGCCT+AGG | 0.578719 | 8:-8174690 | None:intergenic |
| CAGCATAAAATGGTTGAGCT+CGG | 0.584595 | 8:-8174653 | None:intergenic |
| GAACCAGTCATCGAATCTGA+AGG | 0.587407 | 8:-8174405 | None:intergenic |
| TTTGAACAAGGACAAGGTGG+TGG | 0.593926 | 8:+8174819 | MsG0880042399.01.T01:CDS |
| TCATTAATGGGTTACCCACA+AGG | 0.596190 | 8:+8174732 | MsG0880042399.01.T01:CDS |
| GCTCGGTCTTGCGGGAAAGG+GGG | 0.598520 | 8:-8174636 | None:intergenic |
| ACAAGGACAAGGTGGTGGTA+TGG | 0.600214 | 8:+8174824 | MsG0880042399.01.T01:CDS |
| TCCTGCCTAGGCATATCATA+GGG | 0.602568 | 8:-8174678 | None:intergenic |
| GTGGATCCAAGGGATTCTAA+AGG | 0.606288 | 8:+8174849 | MsG0880042399.01.T01:CDS |
| AACTGAAAAGGTTCTTGTGG+GGG | 0.606613 | 8:-8174483 | None:intergenic |
| TCGATGACTGGTTCTGTCGG+AGG | 0.607518 | 8:+8174414 | MsG0880042399.01.T01:CDS |
| GTAAACTGAAAAGGTTCTTG+TGG | 0.607779 | 8:-8174486 | None:intergenic |
| GTAGTTTGGTTTCAACATGT+GGG | 0.611949 | 8:-8174921 | None:intergenic |
| AACCAGTCATCGAATCTGAA+GGG | 0.633497 | 8:-8174404 | None:intergenic |
| GATAACCAAATGGCACAGGT+GGG | 0.645127 | 8:-8174614 | None:intergenic |
| TCTGTCGGAGGTATGCAGCA+GGG | 0.647007 | 8:+8174426 | MsG0880042399.01.T01:CDS |
| ACTGAAAAGGTTCTTGTGGG+GGG | 0.662490 | 8:-8174482 | None:intergenic |
| GTTTGGTTTCAACATGTGGG+CGG | 0.668331 | 8:-8174918 | None:intergenic |
| AAACTGAAAAGGTTCTTGTG+GGG | 0.672282 | 8:-8174484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GGTAATTTCCTTGAAAATTT+GGG | - | Chr8:8174770-8174789 | None:intergenic | 25.0% |
| GGGTAATTTCCTTGAAAATT+TGG | - | Chr8:8174771-8174790 | None:intergenic | 30.0% | |
| GGTAACCCATTAATGAATTT+GGG | - | Chr8:8174728-8174747 | None:intergenic | 30.0% | |
| TAAACTGAAAAGGTTCTTGT+GGG | - | Chr8:8174488-8174507 | None:intergenic | 30.0% | |
| ! | AAGGGATTCTAAAGGTATAT+TGG | + | Chr8:8174857-8174876 | MsG0880042399.01.T01:CDS | 30.0% |
| !! | AATATACCTTTAGAATCCCT+TGG | - | Chr8:8174858-8174877 | None:intergenic | 30.0% |
| AAACTGAAAAGGTTCTTGTG+GGG | - | Chr8:8174487-8174506 | None:intergenic | 35.0% | |
| CTTGAAAATTTGGGCCATTT+GGG | - | Chr8:8174761-8174780 | None:intergenic | 35.0% | |
| GGAGACCCAAATTCATTAAT+GGG | + | Chr8:8174720-8174739 | MsG0880042399.01.T01:CDS | 35.0% | |
| GGGTAACCCATTAATGAATT+TGG | - | Chr8:8174729-8174748 | None:intergenic | 35.0% | |
| GTAAACTGAAAAGGTTCTTG+TGG | - | Chr8:8174489-8174508 | None:intergenic | 35.0% | |
| TACTCAGGAAATGAGTTATC+TGG | - | Chr8:8174534-8174553 | None:intergenic | 35.0% | |
| TGGAGACCCAAATTCATTAA+TGG | + | Chr8:8174719-8174738 | MsG0880042399.01.T01:CDS | 35.0% | |
| ! | ATTCCTTTTGAACAAGGACA+AGG | + | Chr8:8174813-8174832 | MsG0880042399.01.T01:CDS | 35.0% |
| AACCAGTCATCGAATCTGAA+GGG | - | Chr8:8174407-8174426 | None:intergenic | 40.0% | |
| AACTGAAAAGGTTCTTGTGG+GGG | - | Chr8:8174486-8174505 | None:intergenic | 40.0% | |
| AATCTGAAGGGAGATGTTGT+TGG | - | Chr8:8174395-8174414 | None:intergenic | 40.0% | |
| AGATGTTGTTGGCCGAAAAA+TGG | - | Chr8:8174384-8174403 | None:intergenic | 40.0% | |
| CAGCATAAAATGGTTGAGCT+CGG | - | Chr8:8174656-8174675 | None:intergenic | 40.0% | |
| CCTTGAAAATTTGGGCCATT+TGG | - | Chr8:8174762-8174781 | None:intergenic | 40.0% | |
| TCATAGGGAGCAGCATAAAA+TGG | - | Chr8:8174666-8174685 | None:intergenic | 40.0% | |
| TGCTTGTCGGTAAACTGAAA+AGG | - | Chr8:8174498-8174517 | None:intergenic | 40.0% | |
| ! | CCAAATGGCCCAAATTTTCA+AGG | + | Chr8:8174759-8174778 | MsG0880042399.01.T01:CDS | 40.0% |
| !! | CAGCAAAAGCCACCATTTTT+CGG | + | Chr8:8174369-8174388 | MsG0880042399.01.T01:CDS | 40.0% |
| !! | TCATTAATGGGTTACCCACA+AGG | + | Chr8:8174732-8174751 | MsG0880042399.01.T01:CDS | 40.0% |
| ACTGAAAAGGTTCTTGTGGG+GGG | - | Chr8:8174485-8174504 | None:intergenic | 45.0% | |
| CAGGACTCGTCTTCTGATAT+TGG | + | Chr8:8174696-8174715 | MsG0880042399.01.T01:CDS | 45.0% | |
| CCACCTTGTCCTTGTTCAAA+AGG | - | Chr8:8174819-8174838 | None:intergenic | 45.0% | |
| GAACCAGTCATCGAATCTGA+AGG | - | Chr8:8174408-8174427 | None:intergenic | 45.0% | |
| GACTCGTCTTCTGATATTGG+TGG | + | Chr8:8174699-8174718 | MsG0880042399.01.T01:CDS | 45.0% | |
| GATAACCAAATGGCACAGGT+GGG | - | Chr8:8174617-8174636 | None:intergenic | 45.0% | |
| GTGGATCCAAGGGATTCTAA+AGG | + | Chr8:8174849-8174868 | MsG0880042399.01.T01:CDS | 45.0% | |
| TCCTGCCTAGGCATATCATA+GGG | - | Chr8:8174681-8174700 | None:intergenic | 45.0% | |
| TGTTGTTGGCCGAAAAATGG+TGG | - | Chr8:8174381-8174400 | None:intergenic | 45.0% | |
| TTTGAACAAGGACAAGGTGG+TGG | + | Chr8:8174819-8174838 | MsG0880042399.01.T01:CDS | 45.0% | |
| ! | ACCAACTGATTGCTGCTTGT+CGG | - | Chr8:8174511-8174530 | None:intergenic | 45.0% |
| ! | CCTTTTGAACAAGGACAAGG+TGG | + | Chr8:8174816-8174835 | MsG0880042399.01.T01:CDS | 45.0% |
| ! | GCAGGCATTCCTTTTGAACA+AGG | + | Chr8:8174807-8174826 | MsG0880042399.01.T01:CDS | 45.0% |
| !! | GATTCGATGACTGGTTCTGT+CGG | + | Chr8:8174411-8174430 | MsG0880042399.01.T01:CDS | 45.0% |
| AATGGTTGAGCTCGGTCTTG+CGG | - | Chr8:8174648-8174667 | None:intergenic | 50.0% | |
| ACCGACAAGCAGCAATCAGT+TGG | + | Chr8:8174507-8174526 | MsG0880042399.01.T01:CDS | 50.0% | |
| CTCCCTTCAGATTCGATGAC+TGG | + | Chr8:8174402-8174421 | MsG0880042399.01.T01:CDS | 50.0% | |
| CTGCTCCCTATGATATGCCT+AGG | + | Chr8:8174673-8174692 | MsG0880042399.01.T01:CDS | 50.0% | |
| GCTGCATGTCGAAACTTTGC+TGG | - | Chr8:8174458-8174477 | None:intergenic | 50.0% | |
| GGATAACCAAATGGCACAGG+TGG | - | Chr8:8174618-8174637 | None:intergenic | 50.0% | |
| GGGAAAGGGGGATAACCAAA+TGG | - | Chr8:8174627-8174646 | None:intergenic | 50.0% | |
| GGGTGCATTGTTGGATACTC+AGG | - | Chr8:8174549-8174568 | None:intergenic | 50.0% | |
| GTCCTGCCTAGGCATATCAT+AGG | - | Chr8:8174682-8174701 | None:intergenic | 50.0% | |
| TCCCTATGATATGCCTAGGC+AGG | + | Chr8:8174677-8174696 | MsG0880042399.01.T01:CDS | 50.0% | |
| TGGTATGGCTGTGGATCCAA+GGG | + | Chr8:8174839-8174858 | MsG0880042399.01.T01:CDS | 50.0% | |
| ! | ACAAGGACAAGGTGGTGGTA+TGG | + | Chr8:8174824-8174843 | MsG0880042399.01.T01:CDS | 50.0% |
| ! | GTGGGTTCAGCATTGGGTTT+GGG | - | Chr8:8174599-8174618 | None:intergenic | 50.0% |
| ! | TACCCACAAGGTGTCCCAAA+TGG | + | Chr8:8174744-8174763 | MsG0880042399.01.T01:CDS | 50.0% |
| ! | TCAGCATTGGGTTTGGGTGT+GGG | - | Chr8:8174593-8174612 | None:intergenic | 50.0% |
| ! | TTCAGCATTGGGTTTGGGTG+TGG | - | Chr8:8174594-8174613 | None:intergenic | 50.0% |
| !! | GAACATTGGTGGGTTGTGCA+GGG | - | Chr8:8174569-8174588 | None:intergenic | 50.0% |
| AAGGAAATTACCCCCAGCCC+TGG | + | Chr8:8174778-8174797 | MsG0880042399.01.T01:CDS | 55.0% | |
| AGGAATGCCTGCTGCATTCC+AGG | - | Chr8:8174799-8174818 | None:intergenic | 55.0% | |
| ATGGTTGAGCTCGGTCTTGC+GGG | - | Chr8:8174647-8174666 | None:intergenic | 55.0% | |
| GGAATGCCTGCTGCATTCCA+GGG | - | Chr8:8174798-8174817 | None:intergenic | 55.0% | |
| GGGGGATAACCAAATGGCAC+AGG | - | Chr8:8174621-8174640 | None:intergenic | 55.0% | |
| GGTTGTGCAGGGTGCATTGT+TGG | - | Chr8:8174558-8174577 | None:intergenic | 55.0% | |
| GTGGTATGGCTGTGGATCCA+AGG | + | Chr8:8174838-8174857 | MsG0880042399.01.T01:CDS | 55.0% | |
| GTTTGGGTGTGGGGGAACAT+TGG | - | Chr8:8174583-8174602 | None:intergenic | 55.0% | |
| TCAGAAGACGAGTCCTGCCT+AGG | - | Chr8:8174693-8174712 | None:intergenic | 55.0% | |
| ! | ACAAGGTGGTGGTATGGCTG+TGG | + | Chr8:8174830-8174849 | MsG0880042399.01.T01:CDS | 55.0% |
| ! | AGCATTGGGTTTGGGTGTGG+GGG | - | Chr8:8174591-8174610 | None:intergenic | 55.0% |
| ! | CAGCATTGGGTTTGGGTGTG+GGG | - | Chr8:8174592-8174611 | None:intergenic | 55.0% |
| ! | CTGAACCCACCTGTGCCATT+TGG | + | Chr8:8174609-8174628 | MsG0880042399.01.T01:CDS | 55.0% |
| ! | GCACAGGTGGGTTCAGCATT+GGG | - | Chr8:8174605-8174624 | None:intergenic | 55.0% |
| ! | GGCCATTTGGGACACCTTGT+GGG | - | Chr8:8174749-8174768 | None:intergenic | 55.0% |
| ! | GGTGGGTTCAGCATTGGGTT+TGG | - | Chr8:8174600-8174619 | None:intergenic | 55.0% |
| ! | TCTGTCGGAGGTATGCAGCA+GGG | + | Chr8:8174426-8174445 | MsG0880042399.01.T01:CDS | 55.0% |
| ! | TTCTGTCGGAGGTATGCAGC+AGG | + | Chr8:8174425-8174444 | MsG0880042399.01.T01:CDS | 55.0% |
| !! | GGAACATTGGTGGGTTGTGC+AGG | - | Chr8:8174570-8174589 | None:intergenic | 55.0% |
| !! | TCGATGACTGGTTCTGTCGG+AGG | + | Chr8:8174414-8174433 | MsG0880042399.01.T01:CDS | 55.0% |
| AGCTCGGTCTTGCGGGAAAG+GGG | - | Chr8:8174640-8174659 | None:intergenic | 60.0% | |
| GAGCTCGGTCTTGCGGGAAA+GGG | - | Chr8:8174641-8174660 | None:intergenic | 60.0% | |
| GGGTGTGGGGGAACATTGGT+GGG | - | Chr8:8174579-8174598 | None:intergenic | 60.0% | |
| TGAGCTCGGTCTTGCGGGAA+AGG | - | Chr8:8174642-8174661 | None:intergenic | 60.0% | |
| TGGGTGTGGGGGAACATTGG+TGG | - | Chr8:8174580-8174599 | None:intergenic | 60.0% | |
| ! | GGCACAGGTGGGTTCAGCAT+TGG | - | Chr8:8174606-8174625 | None:intergenic | 60.0% |
| ! | GGGCCATTTGGGACACCTTG+TGG | - | Chr8:8174750-8174769 | None:intergenic | 60.0% |
| CAACATGTGGGCGGAGGTGG+TGG | - | Chr8:8174912-8174931 | None:intergenic | 65.0% | |
| CCTGCTGCATTCCAGGGCTG+GGG | - | Chr8:8174792-8174811 | None:intergenic | 65.0% | |
| CTGCTGCATTCCAGGGCTGG+GGG | - | Chr8:8174791-8174810 | None:intergenic | 65.0% | |
| GCCTGCTGCATTCCAGGGCT+GGG | - | Chr8:8174793-8174812 | None:intergenic | 65.0% | |
| GCTCGGTCTTGCGGGAAAGG+GGG | - | Chr8:8174639-8174658 | None:intergenic | 65.0% | |
| TGCCTGCTGCATTCCAGGGC+TGG | - | Chr8:8174794-8174813 | None:intergenic | 65.0% | |
| CCCCAGCCCTGGAATGCAGC+AGG | + | Chr8:8174789-8174808 | MsG0880042399.01.T01:CDS | 70.0% | |
| ! | CATGTGGGCGGAGGTGGTGG+TGG | - | Chr8:8174909-8174928 | None:intergenic | 70.0% |
| !! | GGTGGTGGCGGGAGAGGCAT+GGG | - | Chr8:8174891-8174910 | None:intergenic | 70.0% |
| !! | TGGTGGTGGCGGGAGAGGCA+TGG | - | Chr8:8174892-8174911 | None:intergenic | 70.0% |
| ! | GGCGGGAGAGGCATGGGCTG+TGG | - | Chr8:8174885-8174904 | None:intergenic | 75.0% |
| !! | GCGGAGGTGGTGGTGGTGGC+GGG | - | Chr8:8174902-8174921 | None:intergenic | 75.0% |
| !! | GGCGGAGGTGGTGGTGGTGG+CGG | - | Chr8:8174903-8174922 | None:intergenic | 75.0% |
| !! | GGTGGTGGTGGTGGCGGGAG+AGG | - | Chr8:8174897-8174916 | None:intergenic | 75.0% |
| !! | GTGGGCGGAGGTGGTGGTGG+TGG | - | Chr8:8174906-8174925 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 8174366 | 8174932 | 8174366 | ID=MsG0880042399.01;Name=MsG0880042399.01 |
| Chr8 | mRNA | 8174366 | 8174932 | 8174366 | ID=MsG0880042399.01.T01;Parent=MsG0880042399.01;Name=MsG0880042399.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|188 |
| Chr8 | exon | 8174366 | 8174932 | 8174366 | ID=MsG0880042399.01.T01:exon:13361;Parent=MsG0880042399.01.T01 |
| Chr8 | CDS | 8174366 | 8174932 | 8174366 | ID=MsG0880042399.01.T01:cds;Parent=MsG0880042399.01.T01 |
| Chr8 | mRNA | 8174417 | 8174932 | 8174417 | ID=MsG0880042399.01.T02;Parent=MsG0880042399.01;Name=MsG0880042399.01.T02;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|171 |
| Chr8 | exon | 8174417 | 8174932 | 8174417 | ID=MsG0880042399.01.T02:exon:13362;Parent=MsG0880042399.01.T02 |
| Chr8 | CDS | 8174417 | 8174932 | 8174417 | ID=MsG0880042399.01.T02:cds;Parent=MsG0880042399.01.T02 |
| Gene Sequence |
| Protein sequence |
