AlfalfaGEDB | MsG0380016353.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016353.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016353.01.T01	XP_039687572.1	90.055	181	0	1	1	163	1	181	3.49E-113	330
MsG0380016353.01.T02	XP_003602028.1	99.454	183	0	1	37	219	1	182	1.01E-127	369
MsG0380016353.01.T03	XP_003602028.1	94.301	193	0	2	37	229	1	182	2.14E-124	361
MsG0380016353.01.T04	AFK33700.1	96.471	85	2	1	1	85	1	84	4.00E-46	153

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016353.01.T01	G7J4F6	89.560	182	0	2	1	163	1	182	1.11e-111	325
MsG0380016353.01.T02	G7J4F6	99.454	183	0	1	37	219	1	182	4.83e-128	369
MsG0380016353.01.T03	G7J4F6	94.301	193	0	2	37	229	1	182	1.02e-124	361
MsG0380016353.01.T04	I3S0A8	96.471	85	2	1	1	85	1	84	1.91e-46	153

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004493.01	MsG0380016353.01	0.802479	5.502668e-49	2.698217e-46
MsG0180005330.01	MsG0380016353.01	-0.829686	4.479633e-55	4.618561e-52
MsG0180006025.01	MsG0380016353.01	0.838695	2.467707e-57	3.331417e-54
MsG0280007165.01	MsG0380016353.01	-0.850542	1.587666e-60	3.120425e-57
MsG0380013686.01	MsG0380016353.01	0.803418	3.518898e-49	1.767439e-46
MsG0380016353.01	MsG0480018292.01	0.821120	4.780160e-53	3.854813e-50
MsG0380016353.01	MsG0480018911.01	0.809812	1.572810e-50	9.326510e-48
MsG0380016353.01	MsG0480021876.01	-0.811616	6.405936e-51	3.983768e-48
MsG0380016353.01	MsG0480022245.01	0.803832	2.887485e-49	1.465850e-46
MsG0380016353.01	MsG0480022248.01	0.811475	6.872297e-51	4.258265e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016353.01.T01	MTR_3g088010	89.560	182	2	1	163	1	182	2.82e-115	325
MsG0380016353.01.T02	MTR_3g088010	99.454	183	1	37	219	1	182	1.22e-131	369
MsG0380016353.01.T03	MTR_3g088010	94.301	193	2	37	229	1	182	2.59e-128	361

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016353.01.T01	AT1G21830	46.341	164	74	4	8	163	7	164	1.27e-32	115
MsG0380016353.01.T01	AT1G44608	38.065	155	76	4	13	162	12	151	1.28e-17	75.9
MsG0380016353.01.T02	AT1G21830	41.304	184	74	5	44	219	7	164	8.66e-28	105
MsG0380016353.01.T02	AT1G44608	35.838	173	75	7	49	218	12	151	3.91e-14	68.2
MsG0380016353.01.T03	AT1G21830	40.000	195	71	6	44	229	7	164	2.00e-26	101
MsG0380016353.01.T03	AT1G44608	31.868	182	80	5	49	228	12	151	1.39e-13	67.0

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Find 45 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAACGGTGGTTATGATGG+TGG	0.643533	3:-82383718	None:intergenic
AAGAAGAACGGTGGTTATGA+TGG	0.478238	3:-82383721	None:intergenic
AAGATGAAGAAGAAGAACGG+TGG	0.658130	3:-82383730	None:intergenic
AAGGAAATGGGGTAGCCTCG+TGG	0.628547	3:+82385756	MsG0380016353.01.T01:CDS
AATCAAGTTTGAAGGAAATG+GGG	0.642471	3:+82385745	MsG0380016353.01.T01:CDS
ACACATTCAGGTGGAGAAAG+AGG	0.548112	3:+82385885	MsG0380016353.01.T01:CDS
ACACCAACAACTACTTGTTT+AGG	0.281173	3:-82383638	None:intergenic
ACATGAATAGGAATGGATAT+AGG	0.360762	3:+82383588	MsG0380016353.01.T03:CDS
AGCCTCGTGGGAAAAGAGCA+CGG	0.642699	3:+82385769	MsG0380016353.01.T01:CDS
AGCCTTTCATTCAAGCATAA+AGG	0.335003	3:-82383665	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTATGGTATGTGGATT+TGG	+	Chr3:82385023-82385042	MsG0380016353.01.T01:intron	30.0%
AAGTGTAAGACCATTTACAA+TGG	+	Chr3:82384477-82384496	MsG0380016353.01.T01:intron	30.0%
AATCAAGTTTGAAGGAAATG+GGG	+	Chr3:82385745-82385764	MsG0380016353.01.T01:CDS	30.0%
ACATGAATAGGAATGGATAT+AGG	+	Chr3:82383588-82383607	MsG0380016353.01.T03:CDS	30.0%
ACTAGTAGTAGTAAGACATA+AGG	+	Chr3:82384885-82384904	MsG0380016353.01.T01:intron	30.0%
AGTAGCTGAGCATAAAAATT+AGG	+	Chr3:82385444-82385463	MsG0380016353.01.T01:intron	30.0%
ATCTGACATTCAACACAAAA+AGG	-	Chr3:82384840-82384859	None:intergenic	30.0%
ATTAGGGTACACAACTAATT+TGG	+	Chr3:82385052-82385071	MsG0380016353.01.T01:intron	30.0%
ATTCTCATTTCTCATTCCAA+GGG	-	Chr3:82385687-82385706	None:intergenic	30.0%
CAATCAAGTTTGAAGGAAAT+GGG	+	Chr3:82385744-82385763	MsG0380016353.01.T01:CDS	30.0%

Showing 1 to 10 of 149 entries

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	82383482	82385937	82383482	ID=MsG0380016353.01;Name=MsG0380016353.01
Chr3	mRNA	82383590	82385937	82383590	ID=MsG0380016353.01.T01;Parent=MsG0380016353.01;Name=MsG0380016353.01.T01;_AED=0.40;_eAED=0.40;_QI=0\|0\|0\|1\|0\|0\|3\|0\|163
Chr3	exon	82383590	82383745	82383590	ID=MsG0380016353.01.T01:exon:33094;Parent=MsG0380016353.01.T01
Chr3	exon	82383803	82383932	82383803	ID=MsG0380016353.01.T01:exon:33095;Parent=MsG0380016353.01.T01
Chr3	exon	82385732	82385937	82385732	ID=MsG0380016353.01.T01:exon:33096;Parent=MsG0380016353.01.T01
Chr3	CDS	82383590	82383745	82383590	ID=MsG0380016353.01.T01:cds;Parent=MsG0380016353.01.T01
Chr3	CDS	82383803	82383932	82383803	ID=MsG0380016353.01.T01:cds;Parent=MsG0380016353.01.T01
Chr3	CDS	82385732	82385937	82385732	ID=MsG0380016353.01.T01:cds;Parent=MsG0380016353.01.T01
Chr3	mRNA	82383482	82385937	82383482	ID=MsG0380016353.01.T02;Parent=MsG0380016353.01;Name=MsG0380016353.01.T02;_AED=0.39;_eAED=0.39;_QI=0\|1\|0.5\|1\|0\|0.5\|2\|0\|219
Chr3	exon	82385729	82385937	82385729	ID=MsG0380016353.01.T02:exon:33098;Parent=MsG0380016353.01.T02
Chr3	CDS	82383482	82383932	82383482	ID=MsG0380016353.01.T02:cds;Parent=MsG0380016353.01.T02
Chr3	CDS	82385729	82385937	82385729	ID=MsG0380016353.01.T02:cds;Parent=MsG0380016353.01.T02
Chr3	mRNA	82383482	82385937	82383482	ID=MsG0380016353.01.T03;Parent=MsG0380016353.01;Name=MsG0380016353.01.T03;_AED=0.42;_eAED=0.42;_QI=0\|0\|0\|1\|0\|0.5\|2\|0\|229
Chr3	exon	82385699	82385937	82385699	ID=MsG0380016353.01.T03:exon:33099;Parent=MsG0380016353.01.T03
Chr3	CDS	82383482	82383932	82383482	ID=MsG0380016353.01.T03:cds;Parent=MsG0380016353.01.T03
Chr3	CDS	82385699	82385937	82385699	ID=MsG0380016353.01.T03:cds;Parent=MsG0380016353.01.T03
Chr3	mRNA	82383678	82383956	82383678	ID=MsG0380016353.01.T04;Parent=MsG0380016353.01;Name=MsG0380016353.01.T04;_AED=0.47;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|92
Chr3	exon	82383678	82383956	82383678	ID=MsG0380016353.01.T04:exon:33100;Parent=MsG0380016353.01.T04
Chr3	CDS	82383678	82383956	82383678	ID=MsG0380016353.01.T04:cds;Parent=MsG0380016353.01.T04

Gene Sequence

>MsG0380016353.01.T03

CATCACTTTTGTTTAATTAATTTTAAACTTCCCTCTTCTTTCTTTCCTTTTTCACAATTCACTTTCTTCATTCTTCATAGTGTACCAAAAAAACCTTTATTAACAAACATGAATAGGAATGGATATAGGGATGAAAAACCATGTTGCAATTTCCACCCTAAACAAGTAGTTGTTGGTGTATGCCCTTTATGCTTGAATGAAAGGCTTCTTCTATTGGCTGCAAAACAAGGTCGGCGCCACCATCATAACCACCGTTCTTCTTCTTCATCTTCTACCTCCAAAAAAGTTGCTAGTTCACAAAAGCTTCAAAGTTCCGTACACACAAAGCCACCAAATTCTTCTTCTATTCATAAGATCTTTGCTTTTGGTTCTCTCTTCACTCGTCTTGAATCTCGTCACTGCAAATCTCATGGCAACTTTCACTATGATGATATCTCTCCTAGTCCAGAAGATGAGAATGACTTTAATGTAACTTTTACAGAAGACTCATTCATATCAATCAAGTTTGAAGGAAATGGGGTAGCCTCGTGGGAAAAGAGCACGGTCTCAAAGGTGTCCTCCTCCCTAGAGAATTGCAAGAAGAACCATGAGGACAAATTAGAGACCAAGAGTGTGATAGAGCATGCAAAGTCACGTGACACATTCAGGTGGAGAAAGAGGATTGGTCACATGTTCCAGCTCATAAGGTGA

>MsG0380016353.01.T01

ATGAATAGGAATGGATATAGGGATGAAAAACCATGTTGCAATTTCCACCCTAAACAAGTAGTTGTTGGTGTATGCCCTTTATGCTTGAATGAAAGGCTTCTTCTATTGGCTGCAAAACAAGGTCGGCGCCACCATCATAACCACCGTTCTTCTTCTACAAAGCCACCAAATTCTTCTTCTATTCATAAGATCTTTGCTTTTGGTTCTCTCTTCACTCGTCTTGAATCTCGTCACTGCAAATCTCATGGCAACTTTCACTATGATGATATCTCTCCTAGTCCAGAAGACTCATTCATATCAATCAAGTTTGAAGGAAATGGGGTAGCCTCGTGGGAAAAGAGCACGGTCTCAAAGGTGTCCTCCTCCCTAGAGAATTGCAAGAAGAACCATGAGGACAAATTAGAGACCAAGAGTGTGATAGAGCATGCAAAGTCACGTGACACATTCAGGTGGAGAAAGAGGATTGGTCACATGTTCCAGCTCATAAGGTGA

>MsG0380016353.01.T04

ATGAAAGGCTTCTTCTATTGGCTGCAAAACAAGGTCGGCGCCACCATCATAACCACCGTTCTTCTTCTTCATCTTCTACCTCCAAAAAAGTTGCTAGTTCACAAAAGCTTCAAAGTTCCGTACACACAAAGCCACCAAATTCTTCTTCTATTCATAAGATCTTTGCTTTTGGTTCTCTCTTCACTCGTCTTGAATCTCGTCACTGCAAATCTCATGGCAACTTTCACTATGATGATATCTCTCCTAGTCCAGAAGGTAAAATCATTAATATTAATATAA

>MsG0380016353.01.T02

CATCACTTTTGTTTAATTAATTTTAAACTTCCCTCTTCTTTCTTTCCTTTTTCACAATTCACTTTCTTCATTCTTCATAGTGTACCAAAAAAACCTTTATTAACAAACATGAATAGGAATGGATATAGGGATGAAAAACCATGTTGCAATTTCCACCCTAAACAAGTAGTTGTTGGTGTATGCCCTTTATGCTTGAATGAAAGGCTTCTTCTATTGGCTGCAAAACAAGGTCGGCGCCACCATCATAACCACCGTTCTTCTTCTTCATCTTCTACCTCCAAAAAAGTTGCTAGTTCACAAAAGCTTCAAAGTTCCGTACACACAAAGCCACCAAATTCTTCTTCTATTCATAAGATCTTTGCTTTTGGTTCTCTCTTCACTCGTCTTGAATCTCGTCACTGCAAATCTCATGGCAACTTTCACTATGATGATATCTCTCCTAGTCCAGAAGAAGACTCATTCATATCAATCAAGTTTGAAGGAAATGGGGTAGCCTCGTGGGAAAAGAGCACGGTCTCAAAGGTGTCCTCCTCCCTAGAGAATTGCAAGAAGAACCATGAGGACAAATTAGAGACCAAGAGTGTGATAGAGCATGCAAAGTCACGTGACACATTCAGGTGGAGAAAGAGGATTGGTCACATGTTCCAGCTCATAAGGTGA

Protein sequence

>MsG0380016353.01.T03

HHFCLINFKLPSSFFPFSQFTFFILHSVPKKPLLTNMNRNGYRDEKPCCNFHPKQVVVGVCPLCLNERLLLLAAKQGRRHHHNHRSSSSSSTSKKVASSQKLQSSVHTKPPNSSSIHKIFAFGSLFTRLESRHCKSHGNFHYDDISPSPEDENDFNVTFTEDSFISIKFEGNGVASWEKSTVSKVSSSLENCKKNHEDKLETKSVIEHAKSRDTFRWRKRIGHMFQLIR*

>MsG0380016353.01.T01

MNRNGYRDEKPCCNFHPKQVVVGVCPLCLNERLLLLAAKQGRRHHHNHRSSSTKPPNSSSIHKIFAFGSLFTRLESRHCKSHGNFHYDDISPSPEDSFISIKFEGNGVASWEKSTVSKVSSSLENCKKNHEDKLETKSVIEHAKSRDTFRWRKRIGHMFQLIR*

>MsG0380016353.01.T04

MKGFFYWLQNKVGATIITTVLLLHLLPPKKLLVHKSFKVPYTQSHQILLLFIRSLLLVLSSLVLNLVTANLMATFTMMISLLVQKVKSLILI*

>MsG0380016353.01.T02

HHFCLINFKLPSSFFPFSQFTFFILHSVPKKPLLTNMNRNGYRDEKPCCNFHPKQVVVGVCPLCLNERLLLLAAKQGRRHHHNHRSSSSSSTSKKVASSQKLQSSVHTKPPNSSSIHKIFAFGSLFTRLESRHCKSHGNFHYDDISPSPEEDSFISIKFEGNGVASWEKSTVSKVSSSLENCKKNHEDKLETKSVIEHAKSRDTFRWRKRIGHMFQLIR*