Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029550.01.T01 | XP_003617144.2 | 97.535 | 284 | 7 | 0 | 1 | 284 | 1 | 284 | 0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029550.01.T01 | Q9LTR2 | 63.763 | 287 | 97 | 4 | 1 | 284 | 1 | 283 | 2.58E-123 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029550.01.T01 | G7K7Q7 | 97.535 | 284 | 7 | 0 | 1 | 284 | 1 | 284 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048928.01 | MsG0580029550.01 | 0.803749 | 3.004581e-49 | 1.522005e-46 |
| MsG0180000091.01 | MsG0580029550.01 | 0.804017 | 2.643165e-49 | 1.348197e-46 |
| MsG0180000604.01 | MsG0580029550.01 | 0.822706 | 2.052033e-53 | 1.730725e-50 |
| MsG0180000680.01 | MsG0580029550.01 | 0.803754 | 2.998256e-49 | 1.518975e-46 |
| MsG0180001311.01 | MsG0580029550.01 | 0.835812 | 1.349745e-56 | 1.669035e-53 |
| MsG0180002664.01 | MsG0580029550.01 | 0.805182 | 1.510314e-49 | 7.937988e-47 |
| MsG0180002799.01 | MsG0580029550.01 | 0.822917 | 1.832835e-53 | 1.555137e-50 |
| MsG0180002992.01 | MsG0580029550.01 | 0.806503 | 7.968638e-50 | 4.332373e-47 |
| MsG0180003181.01 | MsG0580029550.01 | 0.802393 | 5.730197e-49 | 2.803854e-46 |
| MsG0180003807.01 | MsG0580029550.01 | 0.804553 | 2.043817e-49 | 1.056913e-46 |
| MsG0180003821.01 | MsG0580029550.01 | 0.804708 | 1.897212e-49 | 9.850671e-47 |
| MsG0180003885.01 | MsG0580029550.01 | 0.812584 | 3.938659e-51 | 2.513965e-48 |
| MsG0180004160.01 | MsG0580029550.01 | 0.809287 | 2.038712e-50 | 1.192206e-47 |
| MsG0180004390.01 | MsG0580029550.01 | 0.823016 | 1.738103e-53 | 1.478918e-50 |
| MsG0180004437.01 | MsG0580029550.01 | 0.808696 | 2.727706e-50 | 1.570111e-47 |
| MsG0180004493.01 | MsG0580029550.01 | 0.810427 | 1.158727e-50 | 6.982504e-48 |
| MsG0180005205.01 | MsG0580029550.01 | 0.826662 | 2.398220e-54 | 2.263552e-51 |
| MsG0180005787.01 | MsG0580029550.01 | 0.825164 | 5.442860e-54 | 4.922810e-51 |
| MsG0180006025.01 | MsG0580029550.01 | 0.814115 | 1.815917e-51 | 1.207814e-48 |
| MsG0180006104.01 | MsG0580029550.01 | 0.826528 | 2.581566e-54 | 2.427188e-51 |
| MsG0180006225.01 | MsG0580029550.01 | 0.818140 | 2.289090e-52 | 1.699454e-49 |
| MsG0280010916.01 | MsG0580029550.01 | 0.836028 | 1.189634e-56 | 1.480691e-53 |
| MsG0280011027.01 | MsG0580029550.01 | 0.804999 | 1.649906e-49 | 8.630856e-47 |
| MsG0380013686.01 | MsG0580029550.01 | 0.837494 | 5.027651e-57 | 6.542617e-54 |
| MsG0380014727.01 | MsG0580029550.01 | 0.804900 | 1.729802e-49 | 9.026924e-47 |
| MsG0380014866.01 | MsG0580029550.01 | 0.810723 | 1.000066e-50 | 6.074497e-48 |
| MsG0480018606.01 | MsG0580029550.01 | 0.833290 | 5.806775e-56 | 6.657557e-53 |
| MsG0480018911.01 | MsG0580029550.01 | 0.816385 | 5.683576e-52 | 4.021435e-49 |
| MsG0480019453.01 | MsG0580029550.01 | 0.800300 | 1.537281e-48 | 7.133351e-46 |
| MsG0480019984.01 | MsG0580029550.01 | -0.818403 | 1.996323e-52 | 1.493000e-49 |
| MsG0480020024.01 | MsG0580029550.01 | 0.856381 | 3.343565e-62 | 7.965711e-59 |
| MsG0480021492.01 | MsG0580029550.01 | 0.800563 | 1.359194e-48 | 6.348821e-46 |
| MsG0480022203.01 | MsG0580029550.01 | 0.806338 | 8.635114e-50 | 4.674877e-47 |
| MsG0480023172.01 | MsG0580029550.01 | 0.801674 | 8.053957e-49 | 3.869195e-46 |
| MsG0480023377.01 | MsG0580029550.01 | 0.861935 | 7.231679e-64 | 2.080768e-60 |
| MsG0480023638.01 | MsG0580029550.01 | 0.806825 | 6.813951e-50 | 3.735364e-47 |
| MsG0580024421.01 | MsG0580029550.01 | 0.839083 | 1.959107e-57 | 2.676084e-54 |
| MsG0580025458.01 | MsG0580029550.01 | 0.814408 | 1.564249e-51 | 1.048813e-48 |
| MsG0580025460.01 | MsG0580029550.01 | 0.810389 | 1.181259e-50 | 7.110823e-48 |
| MsG0580025922.01 | MsG0580029550.01 | 0.808565 | 2.910138e-50 | 1.669429e-47 |
| MsG0380015220.01 | MsG0580029550.01 | 0.834958 | 2.217804e-56 | 2.673408e-53 |
| MsG0380016117.01 | MsG0580029550.01 | 0.804053 | 2.597655e-49 | 1.326238e-46 |
| MsG0380016407.01 | MsG0580029550.01 | 0.800786 | 1.223791e-48 | 5.748624e-46 |
| MsG0380016740.01 | MsG0580029550.01 | 0.848673 | 5.274898e-60 | 9.754773e-57 |
| MsG0380017201.01 | MsG0580029550.01 | 0.801624 | 8.245442e-49 | 3.956128e-46 |
| MsG0380017229.01 | MsG0580029550.01 | 0.819294 | 1.252295e-52 | 9.597760e-50 |
| MsG0380017244.01 | MsG0580029550.01 | 0.820813 | 5.625315e-53 | 4.497640e-50 |
| MsG0380017335.01 | MsG0580029550.01 | 0.823273 | 1.513982e-53 | 1.297492e-50 |
| MsG0380017401.01 | MsG0580029550.01 | 0.802402 | 5.706284e-49 | 2.792766e-46 |
| MsG0380017433.01 | MsG0580029550.01 | 0.823418 | 1.399741e-53 | 1.204461e-50 |
| MsG0380017498.01 | MsG0580029550.01 | 0.800509 | 1.394025e-48 | 6.502580e-46 |
| MsG0480018292.01 | MsG0580029550.01 | 0.811493 | 6.810473e-51 | 4.222008e-48 |
| MsG0480018402.01 | MsG0580029550.01 | 0.800215 | 1.599933e-48 | 7.407739e-46 |
| MsG0580027411.01 | MsG0580029550.01 | 0.825294 | 5.069243e-54 | 4.601776e-51 |
| MsG0580028148.01 | MsG0580029550.01 | 0.808383 | 3.181373e-50 | 1.816500e-47 |
| MsG0580028175.01 | MsG0580029550.01 | 0.823896 | 1.081865e-53 | 9.437006e-51 |
| MsG0580029327.01 | MsG0580029550.01 | 0.810574 | 1.077187e-50 | 6.516650e-48 |
| MsG0580029549.01 | MsG0580029550.01 | 0.839306 | 1.714476e-57 | 2.358062e-54 |
| MsG0580029550.01 | MsG0580029628.01 | 0.823276 | 1.511571e-53 | 1.295551e-50 |
| MsG0580029550.01 | MsG0580029647.01 | 0.809875 | 1.523878e-50 | 9.051414e-48 |
| MsG0580029550.01 | MsG0580029801.01 | 0.814841 | 1.254741e-51 | 8.510984e-49 |
| MsG0580029550.01 | MsG0580029879.01 | 0.814779 | 1.294918e-51 | 8.768863e-49 |
| MsG0580029550.01 | MsG0580029919.01 | 0.884508 | 1.806148e-71 | 1.194635e-67 |
| MsG0580029550.01 | MsG0580030142.01 | 0.819735 | 9.933398e-53 | 7.707801e-50 |
| MsG0580029550.01 | MsG0580030144.01 | 0.821285 | 4.380465e-53 | 3.548469e-50 |
| MsG0580029550.01 | MsG0680033465.01 | 0.818319 | 2.085443e-52 | 1.555909e-49 |
| MsG0580029550.01 | MsG0680033926.01 | 0.815572 | 8.628795e-52 | 5.971149e-49 |
| MsG0580029550.01 | MsG0680034235.01 | 0.833818 | 4.286021e-56 | 4.992718e-53 |
| MsG0580029550.01 | MsG0780035937.01 | 0.856371 | 3.365780e-62 | 8.016137e-59 |
| MsG0580029550.01 | MsG0780038644.01 | 0.805568 | 1.253768e-49 | 6.655116e-47 |
| MsG0580029550.01 | MsG0780040794.01 | 0.807087 | 5.999600e-50 | 3.311187e-47 |
| MsG0580029550.01 | MsG0780041192.01 | 0.804777 | 1.835622e-49 | 9.547962e-47 |
| MsG0580029550.01 | MsG0780041229.01 | 0.831544 | 1.571786e-55 | 1.711199e-52 |
| MsG0580029550.01 | MsG0780041300.01 | 0.821273 | 4.406913e-53 | 3.568695e-50 |
| MsG0580029550.01 | MsG0780041482.01 | 0.830574 | 2.720587e-55 | 2.877611e-52 |
| MsG0580029550.01 | MsG0780041729.01 | -0.819899 | 9.116374e-53 | 7.106146e-50 |
| MsG0580029550.01 | MsG0780041734.01 | -0.812160 | 4.874278e-51 | 3.076121e-48 |
| MsG0580029550.01 | MsG0880042399.01 | -0.804602 | 1.996160e-49 | 1.033593e-46 |
| MsG0580029550.01 | MsG0880042596.01 | -0.811162 | 8.037431e-51 | 4.938975e-48 |
| MsG0580029550.01 | MsG0880042795.01 | 0.815971 | 7.032823e-52 | 4.920120e-49 |
| MsG0580029550.01 | MsG0880045329.01 | 0.802022 | 6.833216e-49 | 3.311896e-46 |
| MsG0580029550.01 | MsG0880046538.01 | 0.802543 | 5.336814e-49 | 2.621240e-46 |
| MsG0580029550.01 | MsG0880046921.01 | 0.806753 | 7.059785e-50 | 3.862815e-47 |
| MsG0580029550.01 | MsG0880047696.01 | 0.837799 | 4.198530e-57 | 5.515234e-54 |
| MsG0280006679.01 | MsG0580029550.01 | 0.812831 | 3.477933e-51 | 2.234157e-48 |
| MsG0280006852.01 | MsG0580029550.01 | 0.802270 | 6.075562e-49 | 2.963413e-46 |
| MsG0280007775.01 | MsG0580029550.01 | 0.802162 | 6.394760e-49 | 3.110517e-46 |
| MsG0280007903.01 | MsG0580029550.01 | 0.834848 | 2.364366e-56 | 2.840387e-53 |
| MsG0280008765.01 | MsG0580029550.01 | 0.805630 | 1.216563e-49 | 6.468153e-47 |
| MsG0280009270.01 | MsG0580029550.01 | 0.808206 | 3.470611e-50 | 1.972425e-47 |
| MsG0280010109.01 | MsG0580029550.01 | 0.813604 | 2.353478e-51 | 1.543868e-48 |
| MsG0280010158.01 | MsG0580029550.01 | 0.825436 | 4.693239e-54 | 4.277255e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029550.01.T01 | MTR_5g088340 | 97.535 | 284 | 7 | 0 | 1 | 284 | 1 | 284 | 0.0 | 569 |
| MsG0580029550.01.T01 | MTR_3g040090 | 69.231 | 286 | 75 | 3 | 1 | 283 | 1 | 276 | 2.09e-133 | 379 |
| MsG0580029550.01.T01 | MTR_3g040090 | 68.990 | 287 | 76 | 3 | 1 | 284 | 1 | 277 | 2.82e-133 | 382 |
| MsG0580029550.01.T01 | MTR_3g040090 | 68.990 | 287 | 76 | 3 | 1 | 284 | 1 | 277 | 6.04e-133 | 380 |
| MsG0580029550.01.T01 | MTR_3g040090 | 68.990 | 287 | 76 | 3 | 1 | 284 | 1 | 277 | 9.45e-133 | 384 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029550.01.T01 | AT3G20320 | 63.986 | 286 | 96 | 4 | 1 | 283 | 1 | 282 | 8.66e-125 | 357 |
| MsG0580029550.01.T01 | AT3G20320 | 63.986 | 286 | 96 | 4 | 1 | 283 | 1 | 282 | 8.66e-125 | 357 |
| MsG0580029550.01.T01 | AT3G20320 | 63.763 | 287 | 97 | 4 | 1 | 284 | 1 | 283 | 2.63e-124 | 360 |
Find 84 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAATTTGGAATTTATT+TGG | 0.110769 | 5:+98433582 | None:intergenic |
| TGCCGTGTACTTTCTGAATT+TGG | 0.116083 | 5:+98433571 | None:intergenic |
| CTGGTTCCATTAAGTGATTT+TGG | 0.187008 | 5:-98433701 | MsG0580029550.01.T01:CDS |
| CCGAACCCAAAATCACTTAA+TGG | 0.259393 | 5:+98433695 | None:intergenic |
| TCGACATTCCTAGACGTATT+TGG | 0.262993 | 5:-98433733 | MsG0580029550.01.T01:CDS |
| GGTTCGGTCGTAATAGTGTC+TGG | 0.356449 | 5:-98433679 | MsG0580029550.01.T01:CDS |
| ACCTCAACGAATGAGTTCTT+TGG | 0.362103 | 5:+98432980 | None:intergenic |
| CCAACTGAAGGTGTCGGAAT+TGG | 0.367176 | 5:+98432905 | None:intergenic |
| CTCTTCTCGTCTCTTCGATT+CGG | 0.370282 | 5:-98435071 | MsG0580029550.01.T01:five_prime_UTR |
| TCTGATTCTCACAGGTGTTC+CGG | 0.373808 | 5:+98433514 | None:intergenic |
| GATACTATTTGTGCTCAGTA+TGG | 0.382900 | 5:-98433621 | MsG0580029550.01.T01:CDS |
| CGCCGCTTTCAATTCGAAAT+CGG | 0.390643 | 5:-98433853 | MsG0580029550.01.T01:CDS |
| GGGTCACCAAGGAGTAAGTT+TGG | 0.410151 | 5:-98432822 | MsG0580029550.01.T01:CDS |
| AGGTTGGTTTGAAGATGGTT+GGG | 0.416348 | 5:-98433958 | MsG0580029550.01.T01:exon |
| GGACGAGATGTAGAGGGAAT+TGG | 0.419956 | 5:-98432770 | MsG0580029550.01.T01:CDS |
| TACGTACCTTACAGTGTTGA+TGG | 0.425707 | 5:+98435001 | None:intergenic |
| GTAATAGTGTCTGGGAAGGC+GGG | 0.428287 | 5:-98433670 | MsG0580029550.01.T01:CDS |
| AGGAGTAAGTTTGGATGAAA+TGG | 0.434275 | 5:-98432813 | MsG0580029550.01.T01:CDS |
| TGGTTGGGATAGATATTAAG+AGG | 0.436953 | 5:+98435152 | None:intergenic |
| TTCGTTGAGGTTAACCAGTC+AGG | 0.437205 | 5:-98432968 | MsG0580029550.01.T01:CDS |
| GAGGTTGGTTTGAAGATGGT+TGG | 0.449335 | 5:-98433959 | MsG0580029550.01.T01:exon |
| ACCGACCTGTCTGGTGAAAA+CGG | 0.454976 | 5:+98435224 | None:intergenic |
| ATCTAAGAAGCATGAATCAT+AGG | 0.458575 | 5:+98435037 | None:intergenic |
| CGTAATAGTGTCTGGGAAGG+CGG | 0.459666 | 5:-98433671 | MsG0580029550.01.T01:CDS |
| AGTGTCTGGGAAGGCGGGGT+TGG | 0.460852 | 5:-98433665 | MsG0580029550.01.T01:CDS |
| GATATTAAGAGGAAAGAAAG+TGG | 0.462883 | 5:+98435163 | None:intergenic |
| GTCACATTCGAACATTCATT+CGG | 0.463561 | 5:+98435121 | None:intergenic |
| AATGATGAGAGATGGATTGC+AGG | 0.470223 | 5:+98433932 | None:intergenic |
| AGAAGATATAGCTCTAATCT+TGG | 0.470549 | 5:+98433820 | None:intergenic |
| CTCTACATCTCGTCCGAGAC+GGG | 0.476394 | 5:+98432778 | None:intergenic |
| TTTCATCCAAACTTACTCCT+TGG | 0.476894 | 5:+98432816 | None:intergenic |
| CTCAACAGTTCTATCTATCA+AGG | 0.484924 | 5:+98433993 | None:intergenic |
| CAAGGAGGTTGGTTTGAAGA+TGG | 0.491554 | 5:-98433963 | MsG0580029550.01.T01:exon |
| GGTCGGTATTTCACAAAGAT+CGG | 0.493382 | 5:-98435208 | MsG0580029550.01.T01:five_prime_UTR |
| TCTCTTCCATCAACACTGTA+AGG | 0.496355 | 5:-98435007 | MsG0580029550.01.T01:intron |
| TATCGTCAACAGCTACTCAT+TGG | 0.501193 | 5:-98432747 | MsG0580029550.01.T01:CDS |
| TTCGAGTTTGCTCAAGCTTG+TGG | 0.510719 | 5:-98433545 | MsG0580029550.01.T01:CDS |
| CCTCTACATCTCGTCCGAGA+CGG | 0.518019 | 5:+98432777 | None:intergenic |
| GTCGGTATTTCACAAAGATC+GGG | 0.522515 | 5:-98435207 | MsG0580029550.01.T01:five_prime_UTR |
| AGTAAGTTTGGATGAAATGG+TGG | 0.526004 | 5:-98432810 | MsG0580029550.01.T01:CDS |
| TATTTGTGCTCAGTATGGCT+TGG | 0.529985 | 5:-98433616 | MsG0580029550.01.T01:CDS |
| TCCTTCCTTGAAAAGTATTG+AGG | 0.533072 | 5:-98433459 | MsG0580029550.01.T01:CDS |
| GACGAAGAATGTGCTAAAGA+AGG | 0.539788 | 5:-98432875 | MsG0580029550.01.T01:CDS |
| GAATGTGACTACATAGTACT+TGG | 0.541180 | 5:-98435107 | MsG0580029550.01.T01:five_prime_UTR |
| GCAAACTTTAATGAGTTGCC+TGG | 0.541843 | 5:+98433875 | None:intergenic |
| TTAGCACATTCTTCGTCAAG+AGG | 0.542683 | 5:+98432881 | None:intergenic |
| AGACATGAAGAAACAGAAGT+TGG | 0.546046 | 5:+98433908 | None:intergenic |
| TTGTGAAATACCGACCTGTC+TGG | 0.546379 | 5:+98435215 | None:intergenic |
| GTTTGCTTCCAAATACGTCT+AGG | 0.553355 | 5:+98433725 | None:intergenic |
| TTTCCATCAAAAGACCTGAC+TGG | 0.561040 | 5:+98432954 | None:intergenic |
| CAAGCTTGTGGTATAAGCAC+CGG | 0.567613 | 5:-98433533 | MsG0580029550.01.T01:CDS |
| TCATGTCTGATTTCTCTACC+AGG | 0.568622 | 5:-98433893 | MsG0580029550.01.T01:CDS |
| AAGTTGGTAATGATGAGAGA+TGG | 0.569327 | 5:+98433924 | None:intergenic |
| CCGTCTCGGACGAGATGTAG+AGG | 0.578909 | 5:-98432777 | MsG0580029550.01.T01:CDS |
| AGAATCAGAGGGGTCACTGT+TGG | 0.578987 | 5:-98433500 | MsG0580029550.01.T01:CDS |
| AGCAAGACCGCTTCTTACAC+AGG | 0.579688 | 5:-98432696 | MsG0580029550.01.T01:CDS |
| ACCAAAGAACTCATTCGTTG+AGG | 0.582607 | 5:-98432981 | MsG0580029550.01.T01:CDS |
| ACGTATTTGGAAGCAAACAC+TGG | 0.584425 | 5:-98433720 | MsG0580029550.01.T01:CDS |
| TTCCGATTTCGAATTGAAAG+CGG | 0.589796 | 5:+98433851 | None:intergenic |
| ATGATGAGAGATGGATTGCA+GGG | 0.591195 | 5:+98433933 | None:intergenic |
| AAGTATTGAGGCAGTTGTCG+AGG | 0.591258 | 5:-98433447 | MsG0580029550.01.T01:intron |
| GTGCGATAGAGAAAAGATCA+AGG | 0.594027 | 5:-98432843 | MsG0580029550.01.T01:CDS |
| ATGTCGAATACAACTGCAAG+TGG | 0.594100 | 5:+98433749 | None:intergenic |
| GTTCGGTCGTAATAGTGTCT+GGG | 0.600508 | 5:-98433678 | MsG0580029550.01.T01:CDS |
| TAATAGTGTCTGGGAAGGCG+GGG | 0.601222 | 5:-98433669 | MsG0580029550.01.T01:CDS |
| CCAATTCCGACACCTTCAGT+TGG | 0.606380 | 5:-98432905 | MsG0580029550.01.T01:CDS |
| GTGACCCCTCTGATTCTCAC+AGG | 0.607320 | 5:+98433506 | None:intergenic |
| CAGTGTTGATGGAAGAGAGA+GGG | 0.607639 | 5:+98435012 | None:intergenic |
| GAAAAGATCAAGGGTCACCA+AGG | 0.610061 | 5:-98432833 | MsG0580029550.01.T01:CDS |
| GGAACACCTGTGAGAATCAG+AGG | 0.623624 | 5:-98433512 | MsG0580029550.01.T01:CDS |
| GTAAGTTTGGATGAAATGGT+GGG | 0.624337 | 5:-98432809 | MsG0580029550.01.T01:CDS |
| GGTCGTAATAGTGTCTGGGA+AGG | 0.624828 | 5:-98433674 | MsG0580029550.01.T01:CDS |
| TCGTCAAGAGGACCAACTGA+AGG | 0.630553 | 5:+98432893 | None:intergenic |
| GAACACCTGTGAGAATCAGA+GGG | 0.634134 | 5:-98433511 | MsG0580029550.01.T01:CDS |
| AGAGGACCAACTGAAGGTGT+CGG | 0.635149 | 5:+98432899 | None:intergenic |
| CATCACACCTGTGTAAGAAG+CGG | 0.635877 | 5:+98432689 | None:intergenic |
| TTCCAAATTCAGAAAGTACA+CGG | 0.638247 | 5:-98433573 | MsG0580029550.01.T01:CDS |
| TGCGATAGAGAAAAGATCAA+GGG | 0.640269 | 5:-98432842 | MsG0580029550.01.T01:CDS |
| CGTCTCGGACGAGATGTAGA+GGG | 0.646951 | 5:-98432776 | MsG0580029550.01.T01:CDS |
| GTGGGAATATACACCCGTCT+CGG | 0.650124 | 5:-98432791 | MsG0580029550.01.T01:CDS |
| GGTGTCGGAATTGGATCACG+AGG | 0.685334 | 5:+98432914 | None:intergenic |
| ACAGTGTTGATGGAAGAGAG+AGG | 0.720353 | 5:+98435011 | None:intergenic |
| AGTCATCTAGTTCAGAAACG+AGG | 0.735522 | 5:-98433775 | MsG0580029550.01.T01:CDS |
| AACACCTGTGAGAATCAGAG+GGG | 0.773848 | 5:-98433510 | MsG0580029550.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCATAAAAATTGAAAAA+GGG | + | Chr5:98433847-98433866 | None:intergenic | 10.0% |
| !! | CAAGAAAAAAAATTAAAATT+GGG | + | Chr5:98433117-98433136 | None:intergenic | 10.0% |
| !!! | ATAATTGATTAATGTTATTT+TGG | - | Chr5:98433364-98433383 | MsG0580029550.01.T01:intron | 10.0% |
| !! | AAAATCATATAATCTTAATC+GGG | + | Chr5:98433874-98433893 | None:intergenic | 15.0% |
| !! | AAAGTAATTTAACACAAAAA+AGG | + | Chr5:98433754-98433773 | None:intergenic | 15.0% |
| !! | ATCATTTAATTCCAAATAAT+CGG | + | Chr5:98433783-98433802 | None:intergenic | 15.0% |
| !! | ATTCATAAAAATTGAAAAAG+GGG | + | Chr5:98433846-98433865 | None:intergenic | 15.0% |
| !! | CAAAATCATATAATCTTAAT+CGG | + | Chr5:98433875-98433894 | None:intergenic | 15.0% |
| !! | CAATTCATAAAAATTGAAAA+AGG | + | Chr5:98433848-98433867 | None:intergenic | 15.0% |
| !! | CCAAGAAAAAAAATTAAAAT+TGG | + | Chr5:98433118-98433137 | None:intergenic | 15.0% |
| !! | TTATTATTCACATTATGAAA+AGG | - | Chr5:98433219-98433238 | MsG0580029550.01.T01:intron | 15.0% |
| !!! | ACTTTCATTTTTTTAGTTTT+TGG | - | Chr5:98434875-98434894 | MsG0580029550.01.T01:intron | 15.0% |
| !!! | CCAATTTTAATTTTTTTTCT+TGG | - | Chr5:98433115-98433134 | MsG0580029550.01.T01:intron | 15.0% |
| !! | AATTATAGCAGAAATGAAAA+AGG | + | Chr5:98433199-98433218 | None:intergenic | 20.0% |
| !! | ATGAAAAGTTTAGATAGAAA+AGG | + | Chr5:98433018-98433037 | None:intergenic | 20.0% |
| !! | GACATAACAAAATTATATGT+TGG | + | Chr5:98434705-98434724 | None:intergenic | 20.0% |
| !! | TGAAAAGTTTAGATAGAAAA+GGG | + | Chr5:98433017-98433036 | None:intergenic | 20.0% |
| !! | TTAATCATAAGCATGATATT+AGG | - | Chr5:98433276-98433295 | MsG0580029550.01.T01:intron | 20.0% |
| !!! | AATTTCATCTTTTCTCTAAT+TGG | - | Chr5:98432986-98433005 | MsG0580029550.01.T01:CDS | 20.0% |
| !!! | ACTTGTGTTATTAGAATATT+TGG | - | Chr5:98433335-98433354 | MsG0580029550.01.T01:intron | 20.0% |
| !!! | ATGAAAAGGTGAAATTTTTA+AGG | - | Chr5:98433233-98433252 | MsG0580029550.01.T01:intron | 20.0% |
| !!! | ATGATTGATTAGTGTTATTT+TGG | - | Chr5:98433798-98433817 | MsG0580029550.01.T01:CDS | 20.0% |
| !!! | ATTTGAGACTAGAATAATAA+TGG | + | Chr5:98433171-98433190 | None:intergenic | 20.0% |
| !!! | CATCTTAATAGTTTTTCTTA+TGG | + | Chr5:98433609-98433628 | None:intergenic | 20.0% |
| !!! | TAGTGTTATTTTGGTTTATT+TGG | - | Chr5:98433807-98433826 | MsG0580029550.01.T01:CDS | 20.0% |
| !!! | TGAAAAGGTGAAATTTTTAA+GGG | - | Chr5:98433234-98433253 | MsG0580029550.01.T01:intron | 20.0% |
| !!! | TTATTTTGGTTTATTATGTG+TGG | - | Chr5:98433378-98433397 | MsG0580029550.01.T01:intron | 20.0% |
| !!! | TTCTGAATTTGGAATTTATT+TGG | + | Chr5:98434354-98434373 | None:intergenic | 20.0% |
| !!! | TTTGAGACTAGAATAATAAT+GGG | + | Chr5:98433170-98433189 | None:intergenic | 20.0% |
| ! | AATAAATTGGGATTCACAAT+GGG | + | Chr5:98434654-98434673 | None:intergenic | 25.0% |
| ! | AATTGAAAAAGGGGATAAAA+AGG | + | Chr5:98433837-98433856 | None:intergenic | 25.0% |
| ! | AGAACATATAGTAGAAAAGA+TGG | - | Chr5:98433456-98433475 | MsG0580029550.01.T01:CDS | 25.0% |
| ! | AGAATGATGTATAGACATAA+AGG | + | Chr5:98433083-98433102 | None:intergenic | 25.0% |
| ! | ATAAGCATGATATTAGGATT+TGG | - | Chr5:98433282-98433301 | MsG0580029550.01.T01:intron | 25.0% |
| ! | GAAAAACTATTAAGATGTAG+AGG | - | Chr5:98433612-98433631 | MsG0580029550.01.T01:CDS | 25.0% |
| ! | TAGAGTCATCAATGAAATTA+TGG | + | Chr5:98434524-98434543 | None:intergenic | 25.0% |
| ! | TATTCAGTTGGATTGAAATA+CGG | - | Chr5:98433636-98433655 | MsG0580029550.01.T01:CDS | 25.0% |
| ! | TCATAATAAGATTCGATACA+CGG | - | Chr5:98434787-98434806 | MsG0580029550.01.T01:intron | 25.0% |
| ! | TTGAGACTAGAATAATAATG+GGG | + | Chr5:98433169-98433188 | None:intergenic | 25.0% |
| !! | TGAATGTTGATTATGTAGTA+AGG | - | Chr5:98433525-98433544 | MsG0580029550.01.T01:CDS | 25.0% |
| !!! | ACTTTTGTTATCCGATTATT+TGG | - | Chr5:98433769-98433788 | MsG0580029550.01.T01:CDS | 25.0% |
| !!! | ATTAGGATTTGGTTTGTTAT+TGG | - | Chr5:98433293-98433312 | MsG0580029550.01.T01:intron | 25.0% |
| !!! | ATTTCTAGTGTGTATCTATT+TGG | - | Chr5:98434620-98434639 | MsG0580029550.01.T01:intron | 25.0% |
| AAACAAACAACAACAACAAC+CGG | + | Chr5:98433707-98433726 | None:intergenic | 30.0% | |
| ACATATAGTAGAAAAGATGG+TGG | - | Chr5:98433459-98433478 | MsG0580029550.01.T01:CDS | 30.0% | |
| ATTGAAGTGTAGAAAAACAG+TGG | + | Chr5:98432969-98432988 | None:intergenic | 30.0% | |
| CAATAAATTGGGATTCACAA+TGG | + | Chr5:98434655-98434674 | None:intergenic | 30.0% | |
| CGCAAGATATTATTAACACT+TGG | + | Chr5:98434847-98434866 | None:intergenic | 30.0% | |
| CGGTTTATGATAGAACATTA+TGG | - | Chr5:98433656-98433675 | MsG0580029550.01.T01:CDS | 30.0% | |
| GACATTAGAGAGTGAAATTT+GGG | - | Chr5:98433432-98433451 | MsG0580029550.01.T01:intron | 30.0% | |
| GATATTAAGAGGAAAGAAAG+TGG | + | Chr5:98432773-98432792 | None:intergenic | 30.0% | |
| GGAATTCATCGCAATAAATT+GGG | + | Chr5:98434666-98434685 | None:intergenic | 30.0% | |
| GTGTTAATAATATCTTGCGT+TGG | - | Chr5:98434848-98434867 | MsG0580029550.01.T01:intron | 30.0% | |
| GTTGGTATATCATAGTGAAT+CGG | + | Chr5:98434687-98434706 | None:intergenic | 30.0% | |
| TTGAAGTGTAGAAAAACAGT+GGG | + | Chr5:98432968-98432987 | None:intergenic | 30.0% | |
| ! | ACATAAAGGTATGAGATTGA+AGG | + | Chr5:98433069-98433088 | None:intergenic | 30.0% |
| ! | ACATTCATTCGGTTTTTGTT+TGG | + | Chr5:98432804-98432823 | None:intergenic | 30.0% |
| ! | ATCTAAGAAGCATGAATCAT+AGG | + | Chr5:98432899-98432918 | None:intergenic | 30.0% |
| ! | CACTAGAAATTCGTATTGAT+TGG | + | Chr5:98434610-98434629 | None:intergenic | 30.0% |
| ! | TCATTGATGACTCTAATACA+TGG | - | Chr5:98434529-98434548 | MsG0580029550.01.T01:intron | 30.0% |
| ! | TGGTTCCATTAAGTGATTTT+GGG | - | Chr5:98434233-98434252 | MsG0580029550.01.T01:intron | 30.0% |
| ! | TTCCAAATTCAGAAAGTACA+CGG | - | Chr5:98434360-98434379 | MsG0580029550.01.T01:intron | 30.0% |
| !! | AGAAGATATAGCTCTAATCT+TGG | + | Chr5:98434116-98434135 | None:intergenic | 30.0% |
| !! | TAGAAAAGATGGTGGAAAAT+AGG | - | Chr5:98433467-98433486 | MsG0580029550.01.T01:CDS | 30.0% |
| !! | TGATTTCTAGTTCAATTGTG+CGG | - | Chr5:98433893-98433912 | MsG0580029550.01.T01:CDS | 30.0% |
| AACAAACAACAACAACAACC+GGG | + | Chr5:98433706-98433725 | None:intergenic | 35.0% | |
| AGACATGAAGAAACAGAAGT+TGG | + | Chr5:98434028-98434047 | None:intergenic | 35.0% | |
| AGATGTAGAGGTTATTCAGT+TGG | - | Chr5:98433624-98433643 | MsG0580029550.01.T01:CDS | 35.0% | |
| AGGAGTAAGTTTGGATGAAA+TGG | - | Chr5:98435120-98435139 | MsG0580029550.01.T01:five_prime_UTR | 35.0% | |
| AGTAAGTTTGGATGAAATGG+TGG | - | Chr5:98435123-98435142 | MsG0580029550.01.T01:five_prime_UTR | 35.0% | |
| CGACATTAGAGAGTGAAATT+TGG | - | Chr5:98433431-98433450 | MsG0580029550.01.T01:intron | 35.0% | |
| CGGAATTCATCGCAATAAAT+TGG | + | Chr5:98434667-98434686 | None:intergenic | 35.0% | |
| CTCAACAGTTCTATCTATCA+AGG | + | Chr5:98433943-98433962 | None:intergenic | 35.0% | |
| GAATGTGACTACATAGTACT+TGG | - | Chr5:98432826-98432845 | MsG0580029550.01.T01:CDS | 35.0% | |
| GATACTATTTGTGCTCAGTA+TGG | - | Chr5:98434312-98434331 | MsG0580029550.01.T01:intron | 35.0% | |
| GTAAGTTTGGATGAAATGGT+GGG | - | Chr5:98435124-98435143 | MsG0580029550.01.T01:five_prime_UTR | 35.0% | |
| GTCACATTCGAACATTCATT+CGG | + | Chr5:98432815-98432834 | None:intergenic | 35.0% | |
| TGCGATAGAGAAAAGATCAA+GGG | - | Chr5:98435091-98435110 | MsG0580029550.01.T01:five_prime_UTR | 35.0% | |
| TGGTTGGGATAGATATTAAG+AGG | + | Chr5:98432784-98432803 | None:intergenic | 35.0% | |
| TTCCGATTTCGAATTGAAAG+CGG | + | Chr5:98434085-98434104 | None:intergenic | 35.0% | |
| TTTAGCATCAATTGAGACAC+TGG | + | Chr5:98434581-98434600 | None:intergenic | 35.0% | |
| TTTCATCCAAACTTACTCCT+TGG | + | Chr5:98435120-98435139 | None:intergenic | 35.0% | |
| ! | AACTGCCTCAATACTTTTCA+AGG | + | Chr5:98434482-98434501 | None:intergenic | 35.0% |
| ! | CTGGTTCCATTAAGTGATTT+TGG | - | Chr5:98434232-98434251 | MsG0580029550.01.T01:intron | 35.0% |
| !! | AAGTTGGTAATGATGAGAGA+TGG | + | Chr5:98434012-98434031 | None:intergenic | 35.0% |
| !! | CATTCGGTTTTTGTTTGGTT+GGG | + | Chr5:98432799-98432818 | None:intergenic | 35.0% |
| !! | TCATTCGGTTTTTGTTTGGT+TGG | + | Chr5:98432800-98432819 | None:intergenic | 35.0% |
| !! | TCCTTCCTTGAAAAGTATTG+AGG | - | Chr5:98434474-98434493 | MsG0580029550.01.T01:intron | 35.0% |
| !!! | CCATTAAGTGATTTTGGGTT+CGG | - | Chr5:98434238-98434257 | MsG0580029550.01.T01:intron | 35.0% |
| !!! | TGAACGAGTTTTTGCTGTTA+TGG | - | Chr5:98435210-98435229 | MsG0580029550.01.T01:five_prime_UTR | 35.0% |
| AAAATAGGCTTGGGTGGTTT+GGG | - | Chr5:98433482-98433501 | MsG0580029550.01.T01:CDS | 40.0% | |
| AAGGAGAGTAGAACAGATGA+AGG | - | Chr5:98433544-98433563 | MsG0580029550.01.T01:CDS | 40.0% | |
| ACAAACAACAACAACAACCG+GGG | + | Chr5:98433705-98433724 | None:intergenic | 40.0% | |
| ACCAAAGAACTCATTCGTTG+AGG | - | Chr5:98434952-98434971 | MsG0580029550.01.T01:intron | 40.0% | |
| ACCTCAACGAATGAGTTCTT+TGG | + | Chr5:98434956-98434975 | None:intergenic | 40.0% | |
| ACGTATTTGGAAGCAAACAC+TGG | - | Chr5:98434213-98434232 | MsG0580029550.01.T01:intron | 40.0% | |
| AGGAGAGTAGAACAGATGAA+GGG | - | Chr5:98433545-98433564 | MsG0580029550.01.T01:CDS | 40.0% | |
| ATGTCGAATACAACTGCAAG+TGG | + | Chr5:98434187-98434206 | None:intergenic | 40.0% | |
| CCGAACCCAAAATCACTTAA+TGG | + | Chr5:98434241-98434260 | None:intergenic | 40.0% | |
| GACGAAGAATGTGCTAAAGA+AGG | - | Chr5:98435058-98435077 | MsG0580029550.01.T01:five_prime_UTR | 40.0% | |
| GCAAACTTTAATGAGTTGCC+TGG | + | Chr5:98434061-98434080 | None:intergenic | 40.0% | |
| GGTCGGTATTTCACAAAGAT+CGG | - | Chr5:98432725-98432744 | MsG0580029550.01.T01:CDS | 40.0% | |
| GTCGGTATTTCACAAAGATC+GGG | - | Chr5:98432726-98432745 | MsG0580029550.01.T01:CDS | 40.0% | |
| GTGCGATAGAGAAAAGATCA+AGG | - | Chr5:98435090-98435109 | MsG0580029550.01.T01:five_prime_UTR | 40.0% | |
| GTTTGCTTCCAAATACGTCT+AGG | + | Chr5:98434211-98434230 | None:intergenic | 40.0% | |
| TATCGTCAACAGCTACTCAT+TGG | - | Chr5:98435186-98435205 | MsG0580029550.01.T01:five_prime_UTR | 40.0% | |
| TATTTGTGCTCAGTATGGCT+TGG | - | Chr5:98434317-98434336 | MsG0580029550.01.T01:intron | 40.0% | |
| TCATGTCTGATTTCTCTACC+AGG | - | Chr5:98434040-98434059 | MsG0580029550.01.T01:intron | 40.0% | |
| TCGACATTCCTAGACGTATT+TGG | - | Chr5:98434200-98434219 | MsG0580029550.01.T01:intron | 40.0% | |
| TCTCTTCCATCAACACTGTA+AGG | - | Chr5:98432926-98432945 | MsG0580029550.01.T01:CDS | 40.0% | |
| TGCCGTGTACTTTCTGAATT+TGG | + | Chr5:98434365-98434384 | None:intergenic | 40.0% | |
| TTAGCACATTCTTCGTCAAG+AGG | + | Chr5:98435055-98435074 | None:intergenic | 40.0% | |
| TTTCCATCAAAAGACCTGAC+TGG | + | Chr5:98434982-98435001 | None:intergenic | 40.0% | |
| ! | AGTCATCTAGTTCAGAAACG+AGG | - | Chr5:98434158-98434177 | MsG0580029550.01.T01:intron | 40.0% |
| ! | TAACCAGTCAGGTCTTTTGA+TGG | - | Chr5:98434976-98434995 | MsG0580029550.01.T01:intron | 40.0% |
| ! | TACGTACCTTACAGTGTTGA+TGG | + | Chr5:98432935-98432954 | None:intergenic | 40.0% |
| !! | AAGATGGTGGAAAATAGGCT+TGG | - | Chr5:98433472-98433491 | MsG0580029550.01.T01:CDS | 40.0% |
| !! | AATGATGAGAGATGGATTGC+AGG | + | Chr5:98434004-98434023 | None:intergenic | 40.0% |
| !! | AGATGGTGGAAAATAGGCTT+GGG | - | Chr5:98433473-98433492 | MsG0580029550.01.T01:CDS | 40.0% |
| !! | AGGTTGGTTTGAAGATGGTT+GGG | - | Chr5:98433975-98433994 | MsG0580029550.01.T01:five_prime_UTR | 40.0% |
| !! | ATGATGAGAGATGGATTGCA+GGG | + | Chr5:98434003-98434022 | None:intergenic | 40.0% |
| !! | GCCTCAATACTTTTCAAGGA+AGG | + | Chr5:98434478-98434497 | None:intergenic | 40.0% |
| !!! | GAACTGTTGAGTTTTGAGCA+AGG | - | Chr5:98433952-98433971 | MsG0580029550.01.T01:exon | 40.0% |
| !!! | GTTGGACTGTTTTTGGTATC+TGG | - | Chr5:98434286-98434305 | MsG0580029550.01.T01:intron | 40.0% |
| AACACCTGTGAGAATCAGAG+GGG | - | Chr5:98434423-98434442 | MsG0580029550.01.T01:intron | 45.0% | |
| ACACTGGTCGCATGTATCAT+AGG | + | Chr5:98434565-98434584 | None:intergenic | 45.0% | |
| CAAGCTTGTGGTATAAGCAC+CGG | - | Chr5:98434400-98434419 | MsG0580029550.01.T01:intron | 45.0% | |
| CTCTTCTCGTCTCTTCGATT+CGG | - | Chr5:98432862-98432881 | MsG0580029550.01.T01:CDS | 45.0% | |
| GAAAAGATCAAGGGTCACCA+AGG | - | Chr5:98435100-98435119 | MsG0580029550.01.T01:five_prime_UTR | 45.0% | |
| GAAAATAGGCTTGGGTGGTT+TGG | - | Chr5:98433481-98433500 | MsG0580029550.01.T01:CDS | 45.0% | |
| GAACACCTGTGAGAATCAGA+GGG | - | Chr5:98434422-98434441 | MsG0580029550.01.T01:intron | 45.0% | |
| GTGGTAAGACTAGACGAGAT+AGG | - | Chr5:98433397-98433416 | MsG0580029550.01.T01:intron | 45.0% | |
| GTTCGGTCGTAATAGTGTCT+GGG | - | Chr5:98434255-98434274 | MsG0580029550.01.T01:intron | 45.0% | |
| TCTGATTCTCACAGGTGTTC+CGG | + | Chr5:98434422-98434441 | None:intergenic | 45.0% | |
| TTCGTTGAGGTTAACCAGTC+AGG | - | Chr5:98434965-98434984 | MsG0580029550.01.T01:intron | 45.0% | |
| TTGTGAAATACCGACCTGTC+TGG | + | Chr5:98432721-98432740 | None:intergenic | 45.0% | |
| ! | CGCCGCTTTCAATTCGAAAT+CGG | - | Chr5:98434080-98434099 | MsG0580029550.01.T01:intron | 45.0% |
| ! | GCAGTTGTCGAGGTTTGTTT+CGG | - | Chr5:98434496-98434515 | MsG0580029550.01.T01:intron | 45.0% |
| ! | TTCGAGTTTGCTCAAGCTTG+TGG | - | Chr5:98434388-98434407 | MsG0580029550.01.T01:intron | 45.0% |
| !! | AAGTATTGAGGCAGTTGTCG+AGG | - | Chr5:98434486-98434505 | MsG0580029550.01.T01:intron | 45.0% |
| !! | ACAGTGTTGATGGAAGAGAG+AGG | + | Chr5:98432925-98432944 | None:intergenic | 45.0% |
| !! | CAAGGAGGTTGGTTTGAAGA+TGG | - | Chr5:98433970-98433989 | MsG0580029550.01.T01:five_prime_UTR | 45.0% |
| !! | CAGTGTTGATGGAAGAGAGA+GGG | + | Chr5:98432924-98432943 | None:intergenic | 45.0% |
| !! | GAGGTTGGTTTGAAGATGGT+TGG | - | Chr5:98433974-98433993 | MsG0580029550.01.T01:five_prime_UTR | 45.0% |
| !!! | CTGTTGAGTTTTGAGCAAGG+AGG | - | Chr5:98433955-98433974 | MsG0580029550.01.T01:exon | 45.0% |
| !!! | TGAGTTTTGAGCAAGGAGGT+TGG | - | Chr5:98433959-98433978 | MsG0580029550.01.T01:exon | 45.0% |
| ACAACAACAACAACCGGGGT+CGG | + | Chr5:98433701-98433720 | None:intergenic | 50.0% | |
| ACCGACCTGTCTGGTGAAAA+CGG | + | Chr5:98432712-98432731 | None:intergenic | 50.0% | |
| AGAATCAGAGGGGTCACTGT+TGG | - | Chr5:98434433-98434452 | MsG0580029550.01.T01:intron | 50.0% | |
| AGCAAGACCGCTTCTTACAC+AGG | - | Chr5:98435237-98435256 | MsG0580029550.01.T01:five_prime_UTR | 50.0% | |
| CCAATTCCGACACCTTCAGT+TGG | - | Chr5:98435028-98435047 | MsG0580029550.01.T01:five_prime_UTR | 50.0% | |
| CGTAATAGTGTCTGGGAAGG+CGG | - | Chr5:98434262-98434281 | MsG0580029550.01.T01:intron | 50.0% | |
| GGAACACCTGTGAGAATCAG+AGG | - | Chr5:98434421-98434440 | MsG0580029550.01.T01:intron | 50.0% | |
| GGACGAGATGTAGAGGGAAT+TGG | - | Chr5:98435163-98435182 | MsG0580029550.01.T01:five_prime_UTR | 50.0% | |
| GGGTCACCAAGGAGTAAGTT+TGG | - | Chr5:98435111-98435130 | MsG0580029550.01.T01:five_prime_UTR | 50.0% | |
| GGTCGTAATAGTGTCTGGGA+AGG | - | Chr5:98434259-98434278 | MsG0580029550.01.T01:intron | 50.0% | |
| GTAATAGTGTCTGGGAAGGC+GGG | - | Chr5:98434263-98434282 | MsG0580029550.01.T01:intron | 50.0% | |
| GTGGGAATATACACCCGTCT+CGG | - | Chr5:98435142-98435161 | MsG0580029550.01.T01:five_prime_UTR | 50.0% | |
| TAATAGTGTCTGGGAAGGCG+GGG | - | Chr5:98434264-98434283 | MsG0580029550.01.T01:intron | 50.0% | |
| TCGTCAAGAGGACCAACTGA+AGG | + | Chr5:98435043-98435062 | None:intergenic | 50.0% | |
| TGGTGGAAAATAGGCTTGGG+TGG | - | Chr5:98433476-98433495 | MsG0580029550.01.T01:CDS | 50.0% | |
| ! | ACCGTTTTCACCAGACAGGT+CGG | - | Chr5:98432708-98432727 | MsG0580029550.01.T01:CDS | 50.0% |
| ! | AGAGGACCAACTGAAGGTGT+CGG | + | Chr5:98435037-98435056 | None:intergenic | 50.0% |
| ! | GGAAACCGTTTTCACCAGAC+AGG | - | Chr5:98432704-98432723 | MsG0580029550.01.T01:CDS | 50.0% |
| ! | GGTTCGGTCGTAATAGTGTC+TGG | - | Chr5:98434254-98434273 | MsG0580029550.01.T01:intron | 50.0% |
| !! | CCAACTGAAGGTGTCGGAAT+TGG | + | Chr5:98435031-98435050 | None:intergenic | 50.0% |
| CCTCTACATCTCGTCCGAGA+CGG | + | Chr5:98435159-98435178 | None:intergenic | 55.0% | |
| CGTCTCGGACGAGATGTAGA+GGG | - | Chr5:98435157-98435176 | MsG0580029550.01.T01:five_prime_UTR | 55.0% | |
| CTCTACATCTCGTCCGAGAC+GGG | + | Chr5:98435158-98435177 | None:intergenic | 55.0% | |
| GTGACCCCTCTGATTCTCAC+AGG | + | Chr5:98434430-98434449 | None:intergenic | 55.0% | |
| TTGATCCATGTAGCCGACCC+CGG | - | Chr5:98433685-98433704 | MsG0580029550.01.T01:CDS | 55.0% | |
| ! | AGGCGGGGTTGGACTGTTTT+TGG | - | Chr5:98434279-98434298 | MsG0580029550.01.T01:intron | 55.0% |
| ! | GGTGTCGGAATTGGATCACG+AGG | + | Chr5:98435022-98435041 | None:intergenic | 55.0% |
| AACAACCGGGGTCGGCTACA+TGG | + | Chr5:98433693-98433712 | None:intergenic | 60.0% | |
| CCGTCTCGGACGAGATGTAG+AGG | - | Chr5:98435156-98435175 | MsG0580029550.01.T01:five_prime_UTR | 60.0% | |
| AGTGTCTGGGAAGGCGGGGT+TGG | - | Chr5:98434268-98434287 | MsG0580029550.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 98432691 | 98435264 | 98432691 | ID=MsG0580029550.01;Name=MsG0580029550.01 |
| Chr5 | mRNA | 98432691 | 98435264 | 98432691 | ID=MsG0580029550.01.T01;Parent=MsG0580029550.01;Name=MsG0580029550.01.T01;_AED=0.49;_eAED=0.50;_QI=321|1|0.66|1|0.5|0.33|3|0|284 |
| Chr5 | exon | 98432691 | 98433026 | 98432691 | ID=MsG0580029550.01.T01:exon:25720;Parent=MsG0580029550.01.T01 |
| Chr5 | exon | 98433448 | 98434030 | 98433448 | ID=MsG0580029550.01.T01:exon:25719;Parent=MsG0580029550.01.T01 |
| Chr5 | exon | 98435008 | 98435264 | 98435008 | ID=MsG0580029550.01.T01:exon:25718;Parent=MsG0580029550.01.T01 |
| Chr5 | five_prime_UTR | 98435008 | 98435264 | 98435008 | ID=MsG0580029550.01.T01:five_prime_utr;Parent=MsG0580029550.01.T01 |
| Chr5 | five_prime_UTR | 98433967 | 98434030 | 98433967 | ID=MsG0580029550.01.T01:five_prime_utr;Parent=MsG0580029550.01.T01 |
| Chr5 | CDS | 98433448 | 98433966 | 98433448 | ID=MsG0580029550.01.T01:cds;Parent=MsG0580029550.01.T01 |
| Chr5 | CDS | 98432691 | 98433026 | 98432691 | ID=MsG0580029550.01.T01:cds;Parent=MsG0580029550.01.T01 |
| Gene Sequence |
| Protein sequence |
