AlfalfaGEDB | MsG0080048656.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048656.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048656.01.T01	RHN42763.1	96.296	108	4	0	1	108	1	108	2.72E-68	211

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048656.01.T01	A0A396GQG2	96.296	108	4	0	1	108	1	108	1.30e-68	211

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048197.01	MsG0080048656.01	0.801174	1.019794e-48	4.837882e-46
MsG0080048656.01	MsG0080048764.01	0.831207	1.903074e-55	2.050943e-52
MsG0080048656.01	MsG0080048843.01	0.801649	8.149125e-49	3.912421e-46
MsG0080048656.01	MsG0180000157.01	0.831833	1.334349e-55	1.465212e-52
MsG0080048656.01	MsG0180000673.01	0.806554	7.775779e-50	4.233082e-47
MsG0080048656.01	MsG0180000739.01	0.823605	1.265763e-53	1.095032e-50
MsG0080048656.01	MsG0180001043.01	0.871775	5.285816e-67	2.158471e-63
MsG0080048656.01	MsG0180001921.01	0.826670	2.388242e-54	2.254639e-51
MsG0080048656.01	MsG0180002482.01	0.811651	6.293671e-51	3.917510e-48
MsG0080048656.01	MsG0180002491.01	0.804233	2.383631e-49	1.222475e-46
MsG0080048656.01	MsG0180003088.01	0.828465	8.856248e-55	8.809874e-52
MsG0080048656.01	MsG0180003174.01	0.814979	1.169091e-51	7.959752e-49
MsG0080048656.01	MsG0180004388.01	0.808943	2.415179e-50	1.399354e-47
MsG0080048656.01	MsG0180004886.01	-0.806605	7.586319e-50	4.135157e-47
MsG0080048656.01	MsG0180005125.01	0.837611	4.693405e-57	6.129513e-54
MsG0080048656.01	MsG0180005424.01	0.801037	1.087578e-48	5.141909e-46
MsG0080048656.01	MsG0180006016.01	0.814878	1.231232e-51	8.359664e-49
MsG0080048656.01	MsG0280006518.01	0.812003	5.274502e-51	3.314395e-48
MsG0080048656.01	MsG0280006596.01	0.805624	1.219959e-49	6.485286e-47
MsG0080048656.01	MsG0280007439.01	0.855651	5.468271e-62	1.271460e-58
MsG0080048656.01	MsG0280007609.01	0.828837	7.201701e-55	7.240891e-52
MsG0080048656.01	MsG0280008971.01	0.836936	6.986717e-57	8.937869e-54
MsG0080048656.01	MsG0280009235.01	0.822229	2.649243e-53	2.204209e-50
MsG0080048656.01	MsG0280010389.01	0.804420	2.178433e-49	1.122666e-46
MsG0080048656.01	MsG0280011235.01	0.813954	1.970098e-51	1.304677e-48
MsG0080048656.01	MsG0380011754.01	0.833612	4.826346e-56	5.586819e-53
MsG0080048656.01	MsG0380012661.01	-0.821084	4.873247e-53	3.926037e-50
MsG0080048656.01	MsG0380014680.01	0.806848	6.740316e-50	3.697264e-47
MsG0080048656.01	MsG0380015686.01	0.805673	1.191408e-49	6.341535e-47
MsG0080048656.01	MsG0380015779.01	0.837678	4.511904e-57	5.905125e-54
MsG0080048656.01	MsG0380016227.01	0.806936	6.457101e-50	3.549858e-47
MsG0080048656.01	MsG0380016828.01	-0.811958	5.395877e-51	3.386408e-48
MsG0080048656.01	MsG0380017226.01	0.839879	1.216483e-57	1.702895e-54
MsG0080048656.01	MsG0380017286.01	0.826962	2.033889e-54	1.936505e-51
MsG0080048656.01	MsG0380017403.01	0.800312	1.529185e-48	7.097808e-46
MsG0080048656.01	MsG0380017998.01	0.809628	1.722799e-50	1.016697e-47
MsG0080048656.01	MsG0380018001.01	0.813941	1.984005e-51	1.313348e-48
MsG0080048656.01	MsG0480018213.01	0.801596	8.355281e-49	4.005925e-46
MsG0080048656.01	MsG0480018603.01	0.806049	9.933202e-50	5.338389e-47
MsG0080048656.01	MsG0480018906.01	0.803189	3.926081e-49	1.960383e-46
MsG0080048656.01	MsG0480018970.01	0.815226	1.030334e-51	7.062099e-49
MsG0080048656.01	MsG0480019163.01	-0.827976	1.161584e-54	1.139194e-51
MsG0080048656.01	MsG0480020445.01	0.824907	6.259081e-54	5.619825e-51
MsG0080048656.01	MsG0480020791.01	0.824051	9.949798e-54	8.716133e-51
MsG0080048656.01	MsG0480021731.01	0.807466	4.985539e-50	2.779020e-47
MsG0080048656.01	MsG0480022035.01	0.801264	9.774319e-49	4.647444e-46
MsG0080048656.01	MsG0480022052.01	-0.808917	2.446572e-50	1.416537e-47
MsG0080048656.01	MsG0480022480.01	0.808469	3.050542e-50	1.745690e-47
MsG0080048656.01	MsG0480022707.01	0.827013	1.977306e-54	1.885296e-51
MsG0080048656.01	MsG0480022768.01	0.828027	1.129596e-54	1.109456e-51
MsG0080048656.01	MsG0480023088.01	0.812259	4.638910e-51	2.935406e-48
MsG0080048656.01	MsG0480023417.01	0.801160	1.026694e-48	4.868955e-46
MsG0080048656.01	MsG0480023517.01	0.828926	6.852334e-55	6.907891e-52
MsG0080048656.01	MsG0580024191.01	0.812726	3.666729e-51	2.349155e-48
MsG0080048656.01	MsG0580024458.01	-0.806367	8.516223e-50	4.613859e-47
MsG0080048656.01	MsG0580025134.01	0.845652	3.552883e-59	5.962438e-56
MsG0080048656.01	MsG0580025278.01	0.805280	1.440377e-49	7.589260e-47
MsG0080048656.01	MsG0580025328.01	0.802209	6.253356e-49	3.045301e-46
MsG0080048656.01	MsG0580025769.01	0.817878	2.623574e-52	1.933850e-49
MsG0080048656.01	MsG0580027034.01	0.837598	4.728451e-57	6.172875e-54
MsG0080048656.01	MsG0580027345.01	0.805113	1.561227e-49	8.191045e-47
MsG0080048656.01	MsG0580028185.01	0.829818	4.161206e-55	4.307190e-52
MsG0080048656.01	MsG0580029148.01	0.805444	1.331340e-49	7.044472e-47
MsG0080048656.01	MsG0580029189.01	0.804484	2.112669e-49	1.090566e-46
MsG0080048656.01	MsG0580029258.01	0.826531	2.577086e-54	2.423240e-51
MsG0080048656.01	MsG0580030235.01	0.813909	2.015973e-51	1.333402e-48
MsG0080048656.01	MsG0680030685.01	0.808294	3.324459e-50	1.893690e-47
MsG0080048656.01	MsG0680030841.01	0.805806	1.117524e-49	5.968563e-47
MsG0080048656.01	MsG0680031538.01	0.829208	5.853339e-55	5.951115e-52
MsG0080048656.01	MsG0680031694.01	0.850273	1.888666e-60	3.679674e-57
MsG0080048656.01	MsG0680031712.01	0.814414	1.559460e-51	1.045778e-48
MsG0080048656.01	MsG0680032430.01	0.811518	6.725270e-51	4.171954e-48
MsG0080048656.01	MsG0680034450.01	0.828005	1.143151e-54	1.122070e-51
MsG0080048656.01	MsG0680034672.01	0.810461	1.139427e-50	6.872394e-48
MsG0080048656.01	MsG0780036291.01	0.829976	3.808576e-55	3.959413e-52
MsG0080048656.01	MsG0780036550.01	0.809639	1.712772e-50	1.011094e-47
MsG0080048656.01	MsG0780037503.01	0.801147	1.032891e-48	4.896724e-46
MsG0080048656.01	MsG0780038444.01	0.834997	2.167857e-56	2.616155e-53
MsG0080048656.01	MsG0780038495.01	0.812391	4.340485e-51	2.756392e-48
MsG0080048656.01	MsG0780039841.01	0.803686	3.096503e-49	1.566010e-46
MsG0080048656.01	MsG0780040726.01	0.840029	1.111846e-57	1.564028e-54
MsG0080048656.01	MsG0780040861.01	0.834669	2.622980e-56	3.133989e-53
MsG0080048656.01	MsG0780040929.01	0.843983	1.001330e-58	1.593715e-55
MsG0080048656.01	MsG0780041399.01	0.808078	3.694956e-50	2.092771e-47
MsG0080048656.01	MsG0880041969.01	0.823935	1.059256e-53	9.249966e-51
MsG0080048656.01	MsG0880042611.01	0.809870	1.528235e-50	9.075898e-48
MsG0080048656.01	MsG0880042811.01	0.811205	7.866797e-51	4.839659e-48
MsG0080048656.01	MsG0880042843.01	0.805101	1.570352e-49	8.236400e-47
MsG0080048656.01	MsG0880043002.01	0.810552	1.089310e-50	6.586047e-48
MsG0080048656.01	MsG0880043082.01	0.814378	1.588729e-51	1.064312e-48
MsG0080048656.01	MsG0880043303.01	0.801261	9.787085e-49	4.653189e-46
MsG0080048656.01	MsG0880043456.01	0.810032	1.410215e-50	8.411008e-48
MsG0080048656.01	MsG0880043465.01	0.802075	6.663026e-49	3.233844e-46
MsG0080048656.01	MsG0880044415.01	0.805395	1.362624e-49	7.200996e-47
MsG0080048656.01	MsG0880045583.01	0.817137	3.853707e-52	2.783471e-49
MsG0080048656.01	MsG0880045631.01	0.820002	8.633158e-53	6.749046e-50
MsG0080048656.01	MsG0880045803.01	0.800677	1.288317e-48	6.035254e-46
MsG0080048656.01	MsG0880046058.01	0.833552	4.994480e-56	5.771598e-53
MsG0080048656.01	MsG0880046091.01	0.800870	1.176762e-48	5.539783e-46
MsG0080048656.01	MsG0880046731.01	0.845655	3.546893e-59	5.953046e-56
MsG0080048656.01	MsG0880046733.01	0.819285	1.258486e-52	9.642773e-50
MsG0080048656.01	MsG0880047191.01	0.806489	8.023882e-50	4.360842e-47
MsG0080048656.01	MsG0880047590.01	0.805200	1.497182e-49	7.872696e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048656.01.T01	MTR_8g088460	94.495	109	6	0	1	109	1	109	9.93e-72	210

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048656.01.T01	AT1G55365	49.275	69	33	1	1	67	1	69	6.26e-16	68.6

Find 12 sgRNAs with CRISPR-Local

Find 11 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTGATGATGCTTCTGCTTC+TGG	0.168743	contig393end:+10201	MsG0080048656.01.T01:CDS
AAAAGCTGATCACTGTTTAT+TGG	0.179925	contig393end:-10045	None:intergenic
AAGAAGATAAGAAGAGTAAA+AGG	0.234240	contig393end:-10154	None:intergenic
AATAAACAGTGATCAGCTTT+TGG	0.289636	contig393end:+10047	MsG0080048656.01.T01:CDS
TAAGAAGAGTAAAAGGAATA+AGG	0.294983	contig393end:-10147	None:intergenic
TGTTTCCCTCTTCATCAACT+TGG	0.458525	contig393end:+10081	MsG0080048656.01.T01:CDS
GAGTAAAAGGAATAAGGTTG+AGG	0.501247	contig393end:-10141	None:intergenic
AGACGACCAAGTTGATGAAG+AGG	0.585076	contig393end:-10087	None:intergenic
GACGACCAAGTTGATGAAGA+GGG	0.605275	contig393end:-10086	None:intergenic
TGTCTGCACAAACGTGGCAA+TGG	0.611212	contig393end:+10004	MsG0080048656.01.T01:CDS
GAAAATGGTGTTGAACACTC+AGG	0.614987	contig393end:+9960	None:intergenic
CACGTGTGTCTGCACAAACG+TGG	0.716541	contig393end:+9998	MsG0080048656.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAGAAGATAAGAAGAGTAAA+AGG	-	contig393end:10157-10176	None:intergenic	25.0%
!	TAAGAAGAGTAAAAGGAATA+AGG	-	contig393end:10150-10169	None:intergenic	25.0%
	AAAAGCTGATCACTGTTTAT+TGG	-	contig393end:10048-10067	None:intergenic	30.0%
!	AATAAACAGTGATCAGCTTT+TGG	+	contig393end:10047-10066	MsG0080048656.01.T01:CDS	30.0%
	GAGTAAAAGGAATAAGGTTG+AGG	-	contig393end:10144-10163	None:intergenic	35.0%
	TGTTTCCCTCTTCATCAACT+TGG	+	contig393end:10081-10100	MsG0080048656.01.T01:CDS	40.0%
!	TCTGATGATGCTTCTGCTTC+TGG	+	contig393end:10201-10220	MsG0080048656.01.T01:CDS	45.0%
!!	AGACGACCAAGTTGATGAAG+AGG	-	contig393end:10090-10109	None:intergenic	45.0%
!!	GACGACCAAGTTGATGAAGA+GGG	-	contig393end:10089-10108	None:intergenic	45.0%
	TGTCTGCACAAACGTGGCAA+TGG	+	contig393end:10004-10023	MsG0080048656.01.T01:CDS	50.0%
	CACGTGTGTCTGCACAAACG+TGG	+	contig393end:9998-10017	MsG0080048656.01.T01:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
contig393end	gene	9964	10308	9964	ID=MsG0080048656.01;Name=MsG0080048656.01
contig393end	mRNA	9964	10308	9964	ID=MsG0080048656.01.T01;Parent=MsG0080048656.01;Name=MsG0080048656.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|114
contig393end	exon	9964	10308	9964	ID=MsG0080048656.01.T01:exon:9213;Parent=MsG0080048656.01.T01
contig393end	CDS	9964	10308	9964	ID=MsG0080048656.01.T01:cds;Parent=MsG0080048656.01.T01

Gene Sequence	>MsG0080048656.01.T01 ATGGTGTTGAACACTCAGGTTGTTGTTCGAGTTGCACGTGTGTCTGCACAAACGTGGCAATGGTTGTCGTGCATTCATGATCCAATAAACAGTGATCAGCTTTTGGATCTTCTTTTTTGTTTCCCTCTTCATCAACTTGGTCGTCTTACTCTTTGTCTTTGTTCTTTCTTCTGTCTTCCTCAACCTTATTCCTTTTACTCTTCTTATCTTCTTTCTGATTCTGAGTTTGATTCTGATTCTGATGATGCTTCTGCTTCTGGTTCTTCAACTTCTACTCTTCATCTTGAACATGATTATTATTATCATTCTCATTCTGATTGTAAGTTTTTCTTCATCTTTTTTTAA
Protein sequence	>MsG0080048656.01.T01 MVLNTQVVVRVARVSAQTWQWLSCIHDPINSDQLLDLLFCFPLHQLGRLTLCLCSFFCLPQPYSFYSSYLLSDSEFDSDSDDASASGSSTSTLHLEHDYYYHSHSDCKFFFIFF*