AlfalfaGEDB | MsG0080048915.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048915.01

KEGG: -
GO: -
PFAM: PF14309

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048915.01.T01	KEH39432.1	95.833	72	3	0	1	72	659	730	4.19E-37	141

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048915.01.T01	F4HSD5	50.685	73	33	2	1	70	477	549	3.10E-12	62.8

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048915.01.T01	A0A072VCE5	95.833	72	3	0	1	72	659	730	2.00e-37	141

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048205.01	MsG0080048915.01	0.825985	3.476365e-54	3.218575e-51
MsG0080048207.01	MsG0080048915.01	0.815608	8.472015e-52	5.868816e-49
MsG0080048915.01	MsG0180000235.01	0.804200	2.421278e-49	1.240779e-46
MsG0080048915.01	MsG0180000266.01	0.821304	4.336080e-53	3.514466e-50
MsG0080048915.01	MsG0180000267.01	0.822672	2.090314e-53	1.761321e-50
MsG0080048915.01	MsG0180000585.01	0.817290	3.560214e-52	2.582182e-49
MsG0080048915.01	MsG0180000822.01	0.807511	4.876336e-50	2.721319e-47
MsG0080048915.01	MsG0180001663.01	0.810262	1.258193e-50	7.549023e-48
MsG0080048915.01	MsG0180001921.01	0.815631	8.372078e-52	5.803246e-49
MsG0080048915.01	MsG0180002894.01	0.803090	4.114210e-49	2.048991e-46
MsG0080048915.01	MsG0180002912.01	0.830670	2.577298e-55	2.733994e-52
MsG0080048915.01	MsG0180004005.01	0.805758	1.143470e-49	6.099925e-47
MsG0080048915.01	MsG0180004060.01	0.812626	3.855849e-51	2.463813e-48
MsG0080048915.01	MsG0180004388.01	0.819732	9.951688e-53	7.721297e-50
MsG0080048915.01	MsG0180004762.01	0.810425	1.160265e-50	6.991178e-48
MsG0080048915.01	MsG0180005172.01	0.803395	3.558997e-49	1.786469e-46
MsG0080048915.01	MsG0180005842.01	0.803159	3.981723e-49	1.986627e-46
MsG0080048915.01	MsG0180005944.01	0.822020	2.962121e-53	2.449712e-50
MsG0080048915.01	MsG0180006016.01	0.815357	9.635332e-52	6.628353e-49
MsG0080048915.01	MsG0280006356.01	0.825111	5.600435e-54	5.057532e-51
MsG0080048915.01	MsG0280007481.01	0.827698	1.354783e-54	1.317782e-51
MsG0080048915.01	MsG0280007585.01	0.806841	6.763591e-50	3.709292e-47
MsG0080048915.01	MsG0280008039.01	0.829014	6.525053e-55	6.594953e-52
MsG0080048915.01	MsG0280008073.01	0.821357	4.216047e-53	3.422188e-50
MsG0080048915.01	MsG0280008220.01	0.823786	1.148092e-53	9.984283e-51
MsG0080048915.01	MsG0280008270.01	0.808273	3.358655e-50	1.912203e-47
MsG0080048915.01	MsG0280008295.01	0.837928	3.890361e-57	5.130384e-54
MsG0080048915.01	MsG0280008907.01	0.803067	4.160593e-49	2.070843e-46
MsG0080048915.01	MsG0280008970.01	0.804802	1.813576e-49	9.439637e-47
MsG0080048915.01	MsG0280008971.01	0.806777	6.976280e-50	3.819551e-47
MsG0080048915.01	MsG0280009024.01	0.831929	1.263234e-55	1.391077e-52
MsG0080048915.01	MsG0280009610.01	0.802942	4.414520e-49	2.190335e-46
MsG0080048915.01	MsG0280009642.01	0.812247	4.667091e-51	2.952317e-48
MsG0080048915.01	MsG0280010416.01	0.812271	4.610375e-51	2.918346e-48
MsG0080048915.01	MsG0280010459.01	0.820032	8.498112e-53	6.649330e-50
MsG0080048915.01	MsG0280010614.01	0.831509	1.603400e-55	1.743696e-52
MsG0080048915.01	MsG0280010739.01	0.826670	2.388807e-54	2.255135e-51
MsG0080048915.01	MsG0280010784.01	0.817505	3.184585e-52	2.323526e-49
MsG0080048915.01	MsG0280011024.01	0.998890	1.182761e-280	5.360490e-273
MsG0080048915.01	MsG0280011052.01	0.824415	8.172487e-54	7.233524e-51
MsG0080048915.01	MsG0280011131.01	0.819047	1.425748e-52	1.085380e-49
MsG0080048915.01	MsG0280011446.01	0.842503	2.485857e-58	3.776881e-55
MsG0080048915.01	MsG0380011663.01	0.816504	5.343994e-52	3.793363e-49
MsG0080048915.01	MsG0380011754.01	0.839367	1.653252e-57	2.278156e-54
MsG0080048915.01	MsG0380012020.01	0.802741	4.857182e-49	2.397836e-46
MsG0080048915.01	MsG0380012033.01	0.806449	8.180544e-50	4.441519e-47
MsG0080048915.01	MsG0380013047.01	0.831125	1.992350e-55	2.142070e-52
MsG0080048915.01	MsG0380013436.01	0.801858	7.384108e-49	3.564180e-46
MsG0080048915.01	MsG0380014573.01	0.837054	6.519391e-57	8.369376e-54
MsG0080048915.01	MsG0380014680.01	0.812005	5.270858e-51	3.312243e-48
MsG0080048915.01	MsG0380015181.01	0.810595	1.066261e-50	6.454203e-48
MsG0080048915.01	MsG0380015324.01	0.814687	1.356920e-51	9.166207e-49
MsG0080048915.01	MsG0380015779.01	0.801003	1.105313e-48	5.221303e-46
MsG0080048915.01	MsG0380015877.01	0.844419	7.647323e-59	1.233855e-55
MsG0080048915.01	MsG0380015931.01	0.825516	4.492461e-54	4.103818e-51
MsG0080048915.01	MsG0380015986.01	0.836349	9.861272e-57	1.239519e-53
MsG0080048915.01	MsG0380016227.01	0.813290	2.758708e-51	1.794272e-48
MsG0080048915.01	MsG0380016581.01	0.801724	7.867042e-49	3.784143e-46
MsG0080048915.01	MsG0380016624.01	0.801801	7.585475e-49	3.655964e-46
MsG0080048915.01	MsG0380016859.01	0.804022	2.636996e-49	1.345215e-46
MsG0080048915.01	MsG0380017140.01	0.831322	1.782707e-55	1.927857e-52
MsG0080048915.01	MsG0380017158.01	0.812931	3.307577e-51	2.130404e-48
MsG0080048915.01	MsG0380017286.01	0.829490	5.000323e-55	5.125388e-52
MsG0080048915.01	MsG0380017403.01	0.816578	5.146083e-52	3.660327e-49
MsG0080048915.01	MsG0380017631.01	0.811058	8.462290e-51	5.186178e-48
MsG0080048915.01	MsG0380017879.01	0.812351	4.429664e-51	2.809956e-48
MsG0080048915.01	MsG0380017940.01	0.812711	3.694109e-51	2.365763e-48
MsG0080048915.01	MsG0380018009.01	0.831492	1.619094e-55	1.759813e-52
MsG0080048915.01	MsG0480018635.01	0.805720	1.164824e-49	6.207779e-47
MsG0080048915.01	MsG0480018970.01	0.818077	2.366488e-52	1.753755e-49
MsG0080048915.01	MsG0480020445.01	0.842111	3.157109e-58	4.738202e-55
MsG0080048915.01	MsG0480020886.01	0.824250	8.934533e-54	7.871072e-51
MsG0080048915.01	MsG0480021021.01	0.809627	1.723459e-50	1.017068e-47
MsG0080048915.01	MsG0480022451.01	0.804807	1.809160e-49	9.417967e-47
MsG0080048915.01	MsG0480022480.01	0.825839	3.765625e-54	3.471963e-51
MsG0080048915.01	MsG0480023088.01	0.801442	8.987713e-49	4.292627e-46
MsG0080048915.01	MsG0480023224.01	0.830842	2.339101e-55	2.493924e-52
MsG0080048915.01	MsG0480023245.01	0.816130	6.479633e-52	4.552850e-49
MsG0080048915.01	MsG0480023248.01	0.805823	1.108130e-49	5.921014e-47
MsG0080048915.01	MsG0480023427.01	0.810904	9.140616e-51	5.579111e-48
MsG0080048915.01	MsG0480023517.01	0.816535	5.261152e-52	3.737719e-49
MsG0080048915.01	MsG0480023554.01	0.814313	1.641798e-51	1.097958e-48
MsG0080048915.01	MsG0480023581.01	0.800970	1.122655e-48	5.298689e-46
MsG0080048915.01	MsG0580024114.01	0.827343	1.648978e-54	1.587717e-51
MsG0080048915.01	MsG0580024204.01	0.800636	1.313128e-48	6.145108e-46
MsG0080048915.01	MsG0580024205.01	0.819325	1.232376e-52	9.453016e-50
MsG0080048915.01	MsG0580024305.01	0.811664	6.251105e-51	3.892369e-48
MsG0080048915.01	MsG0580024306.01	0.812754	3.614958e-51	2.317648e-48
MsG0080048915.01	MsG0580024682.01	0.810564	1.082587e-50	6.547624e-48
MsG0080048915.01	MsG0580024733.01	0.802384	5.755250e-49	2.815511e-46
MsG0080048915.01	MsG0580024853.01	0.803851	2.862083e-49	1.453656e-46
MsG0080048915.01	MsG0580025328.01	0.805049	1.610278e-49	8.434535e-47
MsG0080048915.01	MsG0580025907.01	0.812521	4.065507e-51	2.590700e-48
MsG0080048915.01	MsG0580026596.01	0.821063	4.926368e-53	3.966723e-50
MsG0080048915.01	MsG0580027129.01	0.845355	4.276374e-59	7.107817e-56
MsG0080048915.01	MsG0580027228.01	0.825638	4.203778e-54	3.853541e-51
MsG0080048915.01	MsG0580027345.01	0.824929	6.185052e-54	5.556696e-51
MsG0080048915.01	MsG0580027532.01	0.815645	8.312184e-52	5.763846e-49
MsG0080048915.01	MsG0580027847.01	0.830253	3.259643e-55	3.416113e-52
MsG0080048915.01	MsG0580028527.01	0.812715	3.686800e-51	2.361331e-48
MsG0080048915.01	MsG0580028969.01	0.831482	1.628225e-55	1.769250e-52
MsG0080048915.01	MsG0580029554.01	0.801231	9.926809e-49	4.716021e-46
MsG0080048915.01	MsG0580029758.01	0.803622	3.192865e-49	1.612100e-46
MsG0080048915.01	MsG0580030235.01	0.817379	3.400714e-52	2.472624e-49
MsG0080048915.01	MsG0680030316.01	0.801827	7.493666e-49	3.614108e-46
MsG0080048915.01	MsG0680030629.01	0.815789	7.720716e-52	5.374866e-49
MsG0080048915.01	MsG0680030685.01	0.824840	6.491725e-54	5.817284e-51
MsG0080048915.01	MsG0680031719.01	0.805221	1.481989e-49	7.796842e-47
MsG0080048915.01	MsG0680034036.01	0.803829	2.891941e-49	1.467967e-46
MsG0080048915.01	MsG0680034450.01	0.832808	7.649902e-56	8.645054e-53
MsG0080048915.01	MsG0680035460.01	0.815214	1.036609e-51	7.102644e-49
MsG0080048915.01	MsG0680035573.01	0.805539	1.271070e-49	6.741994e-47
MsG0080048915.01	MsG0680035656.01	0.813982	1.942487e-51	1.287331e-48
MsG0080048915.01	MsG0680035844.01	0.832098	1.147270e-55	1.269456e-52
MsG0080048915.01	MsG0780035958.01	0.818487	1.910756e-52	1.432235e-49
MsG0080048915.01	MsG0780036548.01	0.828582	8.300591e-55	8.284949e-52
MsG0080048915.01	MsG0780036630.01	0.811042	8.534049e-51	5.227870e-48
MsG0080048915.01	MsG0780037515.01	0.816060	6.718452e-52	4.711757e-49
MsG0080048915.01	MsG0780038117.01	0.822672	2.089511e-53	1.760694e-50
MsG0080048915.01	MsG0780038323.01	0.807318	5.358443e-50	2.975414e-47
MsG0080048915.01	MsG0780038829.01	0.818600	1.801058e-52	1.354150e-49
MsG0080048915.01	MsG0780038921.01	0.808377	3.190883e-50	1.821632e-47
MsG0080048915.01	MsG0780039875.01	0.821438	4.037457e-53	3.284680e-50
MsG0080048915.01	MsG0780040442.01	0.820295	7.395878e-53	5.828825e-50
MsG0080048915.01	MsG0780040505.01	0.822476	2.320582e-53	1.944490e-50
MsG0080048915.01	MsG0780040516.01	0.831428	1.678557e-55	1.820926e-52
MsG0080048915.01	MsG0780040679.01	0.825735	3.985179e-54	3.663434e-51
MsG0080048915.01	MsG0780040726.01	0.816454	5.485852e-52	3.888642e-49
MsG0080048915.01	MsG0780040758.01	0.804296	2.312985e-49	1.188228e-46
MsG0080048915.01	MsG0780040951.01	0.815155	1.068644e-51	7.310497e-49
MsG0080048915.01	MsG0780041161.01	0.835928	1.261088e-56	1.564926e-53
MsG0080048915.01	MsG0780041368.01	0.810928	9.031133e-51	5.515991e-48
MsG0080048915.01	MsG0780041485.01	0.835985	1.220061e-56	1.516673e-53
MsG0080048915.01	MsG0780041777.01	0.811146	8.099450e-51	4.975133e-48
MsG0080048915.01	MsG0880042611.01	0.819971	8.776232e-53	6.855125e-50
MsG0080048915.01	MsG0880042843.01	0.836413	9.498318e-57	1.196089e-53
MsG0080048915.01	MsG0880042967.01	0.837926	3.894626e-57	5.135710e-54
MsG0080048915.01	MsG0880043001.01	0.811081	8.368773e-51	5.131789e-48
MsG0080048915.01	MsG0880043287.01	0.802719	4.908569e-49	2.421820e-46
MsG0080048915.01	MsG0880043489.01	0.807728	4.387427e-50	2.462246e-47
MsG0080048915.01	MsG0880044346.01	0.809703	1.660078e-50	9.815723e-48
MsG0080048915.01	MsG0880045106.01	0.840162	1.026497e-57	1.449848e-54
MsG0080048915.01	MsG0880045518.01	0.808906	2.460180e-50	1.423989e-47
MsG0080048915.01	MsG0880046244.01	0.843928	1.035864e-58	1.646006e-55
MsG0080048915.01	MsG0880046329.01	0.847234	1.315650e-59	2.323180e-56
MsG0080048915.01	MsG0880046586.01	0.807018	6.203474e-50	3.417692e-47
MsG0080048915.01	MsG0880046642.01	0.830093	3.566292e-55	3.719774e-52
MsG0080048915.01	MsG0880046731.01	0.800851	1.187117e-48	5.585982e-46
MsG0080048915.01	MsG0880047019.01	0.829943	3.878654e-55	4.028551e-52
MsG0080048915.01	MsG0880047143.01	0.816346	5.797885e-52	4.098229e-49
MsG0080048915.01	MsG0880047425.01	0.812128	4.953688e-51	3.123473e-48
MsG0080048915.01	MsG0880047497.01	0.839302	1.718363e-57	2.363150e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048915.01.T01	MTR_2g096870	95.833	72	3	1	72	659	730	5.07e-41	141
MsG0080048915.01.T01	MTR_2g096870	95.833	72	3	1	72	621	692	5.43e-41	141
MsG0080048915.01.T01	MTR_1g047660	44.928	69	38	4	72	779	847	3.87e-14	65.5
MsG0080048915.01.T01	MTR_4g021865	44.118	68	38	4	71	361	428	3.06e-13	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048915.01.T01	AT1G07620	50.685	73	33	2	1	70	503	575	3.08e-13	62.8
MsG0080048915.01.T01	AT1G07620	50.685	73	33	2	1	70	477	549	3.16e-13	62.8
MsG0080048915.01.T01	AT1G07620	50.685	73	33	2	1	70	477	549	3.16e-13	62.8
MsG0080048915.01.T01	AT1G07620	50.685	73	33	2	1	70	477	549	3.16e-13	62.8
MsG0080048915.01.T01	AT5G02390	46.032	63	33	1	1	62	762	824	1.03e-12	61.6
MsG0080048915.01.T01	AT5G02390	46.032	63	33	1	1	62	762	824	1.03e-12	61.6

Find 13 sgRNAs with CRISPR-Local

Find 10 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTATCTTGTTAAAGAAGTA+TGG	0.258917	contig535end:+9137	MsG0080048915.01.T01:CDS
TTAACAAGATAGTTCCCTTT+AGG	0.319585	contig535end:-9127	None:intergenic
AACTCAAACCAATGCCTAAA+GGG	0.384062	contig535end:+9113	None:intergenic
AGATAGTTCCCTTTAGGCAT+TGG	0.454693	contig535end:-9121	MsG0080048915.01.T01:intergenic
CAGACATTAGATGATGTTGT+TGG	0.474147	contig535end:+9202	MsG0080048915.01.T01:CDS
AAACTCAAACCAATGCCTAA+AGG	0.488700	contig535end:+9112	None:intergenic
TGGTTGGATGAATCTTCAAC+AGG	0.489385	contig535end:+9246	MsG0080048915.01.T01:CDS
GATGAATCTTCAACAGGAAG+AGG	0.528776	contig535end:+9252	MsG0080048915.01.T01:CDS
CTATCTTGTTAAAGAAGTAT+GGG	0.540514	contig535end:+9138	MsG0080048915.01.T01:CDS
TCTAATGTCTGATCTAACTC+TGG	0.557841	contig535end:-9190	MsG0080048915.01.T01:intergenic
GTGTGTAGCACTTGAACTTG+AGG	0.590237	contig535end:+9276	MsG0080048915.01.T01:CDS
ATTTGACGAAAAGAAGTGGT+TGG	0.594040	contig535end:+9230	MsG0080048915.01.T01:CDS
CGTGATTTGACGAAAAGAAG+TGG	0.655367	contig535end:+9226	MsG0080048915.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ACTATCTTGTTAAAGAAGTA+TGG	+	contig535end:9137-9156	MsG0080048915.01.T01:CDS	25.0%
!!	CTATCTTGTTAAAGAAGTAT+GGG	+	contig535end:9138-9157	MsG0080048915.01.T01:CDS	25.0%
	TTAACAAGATAGTTCCCTTT+AGG	-	contig535end:9130-9149	MsG0080048915.01.T01:intergenic	30.0%
	ATTTGACGAAAAGAAGTGGT+TGG	+	contig535end:9230-9249	MsG0080048915.01.T01:CDS	35.0%
	CAGACATTAGATGATGTTGT+TGG	+	contig535end:9202-9221	MsG0080048915.01.T01:CDS	35.0%
	TCTAATGTCTGATCTAACTC+TGG	-	contig535end:9193-9212	MsG0080048915.01.T01:intergenic	35.0%
	CGTGATTTGACGAAAAGAAG+TGG	+	contig535end:9226-9245	MsG0080048915.01.T01:CDS	40.0%
	GATGAATCTTCAACAGGAAG+AGG	+	contig535end:9252-9271	MsG0080048915.01.T01:CDS	40.0%
	TGGTTGGATGAATCTTCAAC+AGG	+	contig535end:9246-9265	MsG0080048915.01.T01:CDS	40.0%
	GTGTGTAGCACTTGAACTTG+AGG	+	contig535end:9276-9295	MsG0080048915.01.T01:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
contig535end	gene	9124	9342	9124	ID=MsG0080048915.01;Name=MsG0080048915.01
contig535end	mRNA	9124	9342	9124	ID=MsG0080048915.01.T01;Parent=MsG0080048915.01;Name=MsG0080048915.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|72
contig535end	exon	9124	9342	9124	ID=MsG0080048915.01.T01:exon:37578;Parent=MsG0080048915.01.T01
contig535end	CDS	9124	9342	9124	ID=MsG0080048915.01.T01:cds;Parent=MsG0080048915.01.T01

Gene Sequence	>MsG0080048915.01.T01 ATGCCTAAAGGGAACTATCTTGTTAAAGAAGTATGGGACAGTGTTAGTTCATATTTGATGTTGAGACCAGAGTTAGATCAGACATTAGATGATGTTGTTGGTCGTGATTTGACGAAAAGAAGTGGTTGGATGAATCTTCAACAGGAAGAGGAGTGTGTAGCACTTGAACTTGAGGAAATGATCATAGATGATTTATTAGATGAAATTCTCTTCTCATGA
Protein sequence	>MsG0080048915.01.T01 MPKGNYLVKEVWDSVSSYLMLRPELDQTLDDVVGRDLTKRSGWMNLQQEEECVALELEEMIIDDLLDEILFS*