AlfalfaGEDB | MsG0880045362.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045362.01

KEGG: -
GO: GO:0005515
PFAM: PF00439 PF17035

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045362.01.T01	XP_003628967.1	78.714	451	7	2	1	451	1	362	0	697

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045362.01.T01	Q84XV2	40.183	438	154	8	14	439	32	373	2.58E-99	305

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045362.01.T01	G7L726	78.714	451	7	2	1	451	1	362	0.0	697

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047944.01	MsG0880045362.01	0.813198	2.889677e-51	1.874694e-48
MsG0080047957.01	MsG0880045362.01	0.822571	2.205585e-53	1.853286e-50
MsG0080047959.01	MsG0880045362.01	0.820829	5.577505e-53	4.461470e-50
MsG0080048065.01	MsG0880045362.01	0.804187	2.436113e-49	1.247985e-46
MsG0080048152.01	MsG0880045362.01	0.803016	4.262672e-49	2.118923e-46
MsG0080048404.01	MsG0880045362.01	0.836072	1.159287e-56	1.444999e-53
MsG0080048462.01	MsG0880045362.01	0.820703	5.962710e-53	4.752659e-50
MsG0080048463.01	MsG0880045362.01	0.814691	1.354113e-51	9.148227e-49
MsG0080048464.01	MsG0880045362.01	0.808202	3.477860e-50	1.976338e-47
MsG0080048683.01	MsG0880045362.01	0.846745	1.790740e-59	3.113135e-56

Showing 1 to 10 of 671 entries

Previous1 2 3 4 5…68Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045362.01.T01	MTR_8g070660	78.714	451	7	2	1	451	1	362	0.0	697
MsG0880045362.01.T01	MTR_8g070660	84.281	299	5	1	1	299	1	257	0.0	511
MsG0880045362.01.T01	MTR_6g033375	45.658	403	130	2	32	434	7	320	1.85e-109	327
MsG0880045362.01.T01	MTR_5g069490	40.678	413	144	7	26	435	26	340	5.37e-84	262
MsG0880045362.01.T01	MTR_2g437920	39.609	409	156	6	32	435	60	382	5.00e-81	255
MsG0880045362.01.T01	MTR_6g045290	62.222	180	66	1	172	349	79	258	6.80e-61	206
MsG0880045362.01.T01	MTR_4g079650	49.474	95	45	1	145	239	665	756	2.76e-25	109
MsG0880045362.01.T01	MTR_4g079650	49.474	95	45	1	145	239	665	756	2.94e-25	109
MsG0880045362.01.T01	MTR_4g079650	49.474	95	45	1	145	239	665	756	3.40e-25	109
MsG0880045362.01.T01	MTR_2g091130	29.545	220	136	4	145	348	306	522	4.01e-24	105

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045362.01.T01	AT2G34900	40.183	438	154	8	14	439	32	373	2.63e-100	305
MsG0880045362.01.T01	AT2G34900	48.355	304	98	4	145	439	10	263	2.59e-92	281
MsG0880045362.01.T01	AT3G52280	43.976	332	139	2	16	347	22	306	4.10e-80	253
MsG0880045362.01.T01	AT3G52280	44.304	316	129	2	32	347	55	323	1.01e-76	244
MsG0880045362.01.T01	AT1G06230	50.476	105	47	2	137	239	421	522	6.79e-25	108
MsG0880045362.01.T01	AT1G06230	50.476	105	47	2	137	239	421	522	6.79e-25	108
MsG0880045362.01.T01	AT1G06230	50.476	105	47	2	137	239	421	522	6.79e-25	108
MsG0880045362.01.T01	AT1G06230	50.476	105	47	2	137	239	421	522	6.79e-25	108
MsG0880045362.01.T01	AT1G73150	30.342	234	126	6	145	348	129	355	4.19e-23	101
MsG0880045362.01.T01	AT1G73150	29.231	260	143	8	123	348	103	355	4.58e-23	101

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

Find 118 sgRNAs with CRISPR-Local

Find 589 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGATGTCCACGTAA+TGG	0.528766	8:+58143654	MsG0880045362.01.T01:CDS
AAAAGGTCATTCAGAATTGC+AGG	0.348722	8:+58145963	MsG0880045362.01.T01:CDS
AACTGATCAGCATTGGCAGA+GGG	0.600521	8:-58139731	None:intergenic
AAGTTGTGAACTTTCAGAGT+AGG	0.557226	8:+58148348	MsG0880045362.01.T01:three_prime_UTR
AATAAAATGGAAGCTAAGGA+TGG	0.569178	8:+58143553	MsG0880045362.01.T01:CDS
ACAACTTTAGTGTTGCGCCA+AGG	0.649479	8:-58147903	None:intergenic
ACATCTACAGGTTCCAGAAA+GGG	0.531692	8:-58142372	None:intergenic
ACATGTGACGGTTGATTATA+TGG	0.333296	8:+58148530	MsG0880045362.01.T01:three_prime_UTR
ACCCTCCAACTGATCAGCAT+TGG	0.553397	8:-58139738	None:intergenic
ACTGGAGAGAAGAAAGCACT+TGG	0.591101	8:+58147678	MsG0880045362.01.T01:CDS

Showing 1 to 10 of 118 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATATTACATGTGTGTGCT+GGG	+	Chr8:58146451-58146470	MsG0880045362.01.T01:intron	30.0%
AAATGCTTAACTTCACACTA+TGG	+	Chr8:58147527-58147546	MsG0880045362.01.T01:intron	30.0%
AAATTGTGATTGTATGAGTG+CGG	+	Chr8:58143864-58143883	MsG0880045362.01.T01:intron	30.0%
AATAAAATGGAAGCTAAGGA+TGG	+	Chr8:58143553-58143572	MsG0880045362.01.T01:CDS	30.0%
AATAGACATCATAAACCATC+TGG	-	Chr8:58145892-58145911	None:intergenic	30.0%
AATGATGAAACAAACACTTG+GGG	-	Chr8:58141926-58141945	None:intergenic	30.0%
AATTATTCTTGTTAGAGTGC+TGG	+	Chr8:58140878-58140897	MsG0880045362.01.T01:intron	30.0%
AATTTACACATTCATTGGCA+TGG	+	Chr8:58144742-58144761	MsG0880045362.01.T01:intron	30.0%
ACATCCTGAAATTGGAAAAT+TGG	+	Chr8:58146988-58147007	MsG0880045362.01.T01:intron	30.0%
ACTCTGCTATAAAAGATAGA+TGG	-	Chr8:58143433-58143452	None:intergenic	30.0%

Showing 1 to 10 of 589 entries

Previous1 2 3 4 5…59Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	58139624	58148591	58139624	ID=MsG0880045362.01;Name=MsG0880045362.01
Chr8	mRNA	58139624	58148591	58139624	ID=MsG0880045362.01.T01;Parent=MsG0880045362.01;Name=MsG0880045362.01.T01;_AED=0.49;_eAED=0.55;_QI=86\|0.71\|0.62\|1\|0.85\|0.75\|8\|307\|451
Chr8	exon	58139624	58139802	58139624	ID=MsG0880045362.01.T01:exon:24693;Parent=MsG0880045362.01.T01
Chr8	exon	58141142	58141475	58141142	ID=MsG0880045362.01.T01:exon:24694;Parent=MsG0880045362.01.T01
Chr8	exon	58142340	58142425	58142340	ID=MsG0880045362.01.T01:exon:24695;Parent=MsG0880045362.01.T01
Chr8	exon	58143517	58143741	58143517	ID=MsG0880045362.01.T01:exon:24696;Parent=MsG0880045362.01.T01
Chr8	exon	58145718	58145816	58145718	ID=MsG0880045362.01.T01:exon:24697;Parent=MsG0880045362.01.T01
Chr8	exon	58145926	58145984	58145926	ID=MsG0880045362.01.T01:exon:24698;Parent=MsG0880045362.01.T01
Chr8	exon	58147668	58147959	58147668	ID=MsG0880045362.01.T01:exon:24699;Parent=MsG0880045362.01.T01
Chr8	exon	58148117	58148591	58148117	ID=MsG0880045362.01.T01:exon:24700;Parent=MsG0880045362.01.T01
Chr8	five_prime_UTR	58139624	58139709	58139624	ID=MsG0880045362.01.T01:five_prime_utr;Parent=MsG0880045362.01.T01
Chr8	CDS	58139710	58139802	58139710	ID=MsG0880045362.01.T01:cds;Parent=MsG0880045362.01.T01
Chr8	CDS	58141142	58141475	58141142	ID=MsG0880045362.01.T01:cds;Parent=MsG0880045362.01.T01
Chr8	CDS	58142340	58142425	58142340	ID=MsG0880045362.01.T01:cds;Parent=MsG0880045362.01.T01
Chr8	CDS	58143517	58143741	58143517	ID=MsG0880045362.01.T01:cds;Parent=MsG0880045362.01.T01
Chr8	CDS	58145718	58145816	58145718	ID=MsG0880045362.01.T01:cds;Parent=MsG0880045362.01.T01
Chr8	CDS	58145926	58145984	58145926	ID=MsG0880045362.01.T01:cds;Parent=MsG0880045362.01.T01
Chr8	CDS	58147668	58147959	58147668	ID=MsG0880045362.01.T01:cds;Parent=MsG0880045362.01.T01
Chr8	CDS	58148117	58148284	58148117	ID=MsG0880045362.01.T01:cds;Parent=MsG0880045362.01.T01
Chr8	three_prime_UTR	58148285	58148591	58148285	ID=MsG0880045362.01.T01:three_prime_utr;Parent=MsG0880045362.01.T01

Gene Sequence

>MsG0880045362.01.T01

ATGGAGCCTTACCCACAACGACCCTCTGCCAATGCTGATCAGTTGGAGGGTTTCAGGAATTCTGTTGACGAATTTCGTACCCAAGTTGACAATCTTCAGAAGCAAGTGATTGAAGTTGAGCAGTACTACGAATCCTCTGGTATTTTTCAAGGCAACAGTTCTAGAGGCGGTTCAGTTGTAAAAGAGAAGGGTCGGGAGAAAACTCTTGCTGGCACTAAAACACCGCTGCAAGATGCATCGCGTACGGAAACCGCTGCTGGAAAGAGGATGCAGGAGCTGATGCGTCAGTTTTCCACAATATTACGTCAGGCAAGTGTGAATACTTTGCAACTTTGTTTTTATTTAATGATATACTTTTCGCAGAAAAAGGAGGCTAGGGTTTTAGGAGTAGTTGCTGGAATGATTCTTGTGTTTCAGAATGTTAAGGCTTTTCAGATCACTCAGCACAAGTGGGCCTGGCCCTTTCTGGAACCTGTAGATGTAGACGGTCTCGGGCTTCACGACTATTACGAGATTATTGATAGGCCCATGGACTTCGGTACGATAAAAAATAAAATGGAAGCTAAGGATGGCACTGGATACAAGAATGTCCGGGAGATTTATGCGGATGTGAGATTGATATTTAAGAATGCCATGAAGTACAACAACGAAAAACATGATGTCCACGTAATGGCAAAGACCTTGATGGAAAAATTTGAAGATAAATGGCTGCTACTATTACCCAAAGTTGCTGAAGAGGAAAAGAGACAAATAGAGGAAGAAGCTCAAGTGCAGATGGACATTCATCTTGCTCAGGAGACGACCTATGCCGATATGGCTAAGGATTTAAGCAATGAGCTTAATGAGGTTGGTATACGTTTGATGGAATTCAGAGAAAAGGTCATTCAGAATTGCAGGAAACTATCTACTGGAGAGAAGAAAGCACTTGGGAAGGCTATCGCCAAATTGTCTCCTGAAAATCTCCAGAGGGCATTGGATTTAGTTGCTGAGATCAACCCAAGCTTTGAATCTACTGCAGATGAGGTGGTGCTTGACATTAATGCTCAGGTCTGCAATGTTAATAATGTTTACTATCAGTGTCATCCATTATCAAATTGTGTATCGTATACTATTTCCTATTCAGAGAGGGAGCCTTGGCGCAACACTAAAGTTGTTGTCCTTGAAACAGCCTCTTGTGTAAAAAACAGGAGTGACTACACAGTCTGGAGATTGTACCGTTTTGTGAAAGGTGCTCTAGAAGGTCAACAAGGCACAGCTGTTAATAATGATACTGAGGAGAAGAGATACAGCTCTAGAAAAAGGCGAGAATTTTCTGATGATCATGCCAAAAACCAATCAAAGAGCAGAAAACTATAG

Protein sequence

>MsG0880045362.01.T01

MEPYPQRPSANADQLEGFRNSVDEFRTQVDNLQKQVIEVEQYYESSGIFQGNSSRGGSVVKEKGREKTLAGTKTPLQDASRTETAAGKRMQELMRQFSTILRQASVNTLQLCFYLMIYFSQKKEARVLGVVAGMILVFQNVKAFQITQHKWAWPFLEPVDVDGLGLHDYYEIIDRPMDFGTIKNKMEAKDGTGYKNVREIYADVRLIFKNAMKYNNEKHDVHVMAKTLMEKFEDKWLLLLPKVAEEEKRQIEEEAQVQMDIHLAQETTYADMAKDLSNELNEVGIRLMEFREKVIQNCRKLSTGEKKALGKAIAKLSPENLQRALDLVAEINPSFESTADEVVLDINAQVCNVNNVYYQCHPLSNCVSYTISYSEREPWRNTKVVVLETASCVKNRSDYTVWRLYRFVKGALEGQQGTAVNNDTEEKRYSSRKRREFSDDHAKNQSKSRKL*