AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046059.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046059.01.T01 MTR_4g098740 100.000 50 0 0 12 61 300 349 1.37e-27 109
MsG0880046059.01.T01 MTR_4g098740 100.000 50 0 0 12 61 418 467 3.01e-27 109
MsG0880046059.01.T01 MTR_5g098970 56.364 55 21 1 7 61 441 492 1.59e-13 70.1
MsG0880046059.01.T01 MTR_4g020070 69.767 43 13 0 18 60 420 462 1.68e-12 67.0
MsG0880046059.01.T01 MTR_4g065003 62.000 50 19 0 18 67 421 470 4.72e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046059.01.T01 AT5G46570 89.796 49 5 0 13 61 410 458 2.95e-23 98.6
MsG0880046059.01.T01 AT4G35230 56.364 55 21 1 7 61 429 480 2.62e-13 69.7
MsG0880046059.01.T01 AT1G50990 56.364 55 21 1 7 61 424 475 7.89e-13 68.2
MsG0880046059.01.T01 AT1G50990 56.364 55 21 1 7 61 429 480 8.00e-13 68.2
MsG0880046059.01.T01 AT3G54030 69.767 43 13 0 18 60 418 460 3.40e-12 66.2
MsG0880046059.01.T01 AT5G59010 67.442 43 14 0 18 60 286 328 1.45e-11 63.9
MsG0880046059.01.T01 AT5G59010 67.442 43 14 0 18 60 416 458 2.39e-11 63.5

Find 46 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTGCATTGGACATCTTT+TGG 0.178127 8:+68408441 None:intergenic
TCCAATGCAGGAAGGGGTTT+TGG 0.274512 8:-68408431 MsG0880046059.01.T01:CDS
TTTGAGAGAGCAAGGCTTGC+AGG 0.284628 8:+68411333 None:intergenic
TCCATGTGCAATCATCTTGT+TGG 0.355867 8:+68408676 None:intergenic
TAGAATGCAGTTGGCCAATC+AGG 0.394501 8:+68411356 None:intergenic
GATGTTCTTAGCATGAAAAC+TGG 0.422202 8:-68408740 MsG0880046059.01.T01:CDS
CATGAAAACTGGAGAATTTG+TGG 0.426883 8:-68408729 MsG0880046059.01.T01:CDS
CGCAAGTATGCATACCTGAT+TGG 0.438597 8:-68411370 MsG0880046059.01.T01:CDS
TTCTGAGATCTTTAACATCC+AGG 0.448096 8:-68408616 MsG0880046059.01.T01:intron
ACCAAAACCCCTTCCTGCAT+TGG 0.448941 8:+68408430 None:intergenic
AAGCCTTGCTCTCTCAAAGC+TGG 0.462783 8:-68411328 MsG0880046059.01.T01:CDS
GACCTTTCATGTGTTGCTCA+TGG 0.465875 8:+68408483 None:intergenic
GAACATCAAGTTCTTTGCAC+AGG 0.467910 8:+68408756 None:intergenic
CGCCTACTTGATGAATGACC+AGG 0.476590 8:-68411423 MsG0880046059.01.T01:CDS
TGCTCTCTCAAAGCTGGGGA+TGG 0.480833 8:-68411322 MsG0880046059.01.T01:CDS
AGCCTTGCTCTCTCAAAGCT+GGG 0.484091 8:-68411327 MsG0880046059.01.T01:CDS
TGCATTAAGAGACGCAATGC+AGG 0.484540 8:-68411393 MsG0880046059.01.T01:CDS
CTCTTAATGCAAGTTCTGCC+TGG 0.486875 8:+68411405 None:intergenic
GTTAGACCTCTTTGCTTCGA+AGG 0.501367 8:+68411263 None:intergenic
TCTCCTTGCAAACACGGTTG+CGG 0.513887 8:+68411451 None:intergenic
AAGAACTAGTAAAGAGAATG+TGG 0.517676 8:-68408372 MsG0880046059.01.T01:CDS
TGGATTGCAAAGTAGTTTGT+TGG 0.519149 8:-68408507 MsG0880046059.01.T01:intron
CATCCGCAACCGTGTTTGCA+AGG 0.524729 8:-68411454 MsG0880046059.01.T01:CDS
ACTATGTGCAAGAAATATCA+AGG 0.533973 8:-68408818 MsG0880046059.01.T01:intron
AAAGATGTCCAATGCAGGAA+GGG 0.538721 8:-68408438 MsG0880046059.01.T01:CDS
GTCGTGGTGGAGATCGTAGA+AGG 0.548016 8:-68408397 MsG0880046059.01.T01:CDS
AAGCAAAGAGGTCTAACAGC+TGG 0.551791 8:-68411257 MsG0880046059.01.T01:CDS
TGCAATCATCTTGTTGGCAG+TGG 0.559001 8:+68408682 None:intergenic
CTTGCAAACACGGTTGCGGA+TGG 0.559452 8:+68411455 None:intergenic
TCCCAAAAGATGTCCAATGC+AGG 0.562410 8:-68408443 MsG0880046059.01.T01:CDS
TCCCCAGCTTTGAGAGAGCA+AGG 0.562907 8:+68411325 None:intergenic
GCACAAGACATGCTTAATGA+TGG 0.575330 8:-68411291 MsG0880046059.01.T01:CDS
GTCCATGAGCAACACATGAA+AGG 0.575810 8:-68408485 MsG0880046059.01.T01:CDS
AACATCAAGTTCTTTGCACA+GGG 0.576936 8:+68408757 None:intergenic
AAAAGATGTCCAATGCAGGA+AGG 0.579597 8:-68408439 MsG0880046059.01.T01:CDS
AAGATGTCCAATGCAGGAAG+GGG 0.581734 8:-68408437 MsG0880046059.01.T01:CDS
GCTTGCAGGTAGAATGCAGT+TGG 0.593220 8:+68411347 None:intergenic
GTCATTCATCAAGTAGGCGA+AGG 0.595314 8:+68411427 None:intergenic
TTTGGTCATGGTAGAAGTCG+TGG 0.600886 8:-68408413 MsG0880046059.01.T01:CDS
GAAGGCTCTCCTTGCAAACA+CGG 0.601187 8:+68411445 None:intergenic
GCCTTGCTCTCTCAAAGCTG+GGG 0.625346 8:-68411326 MsG0880046059.01.T01:CDS
GCCAACAAGATGATTGCACA+TGG 0.642956 8:-68408677 MsG0880046059.01.T01:CDS
TGCCTGGTCATTCATCAAGT+AGG 0.651988 8:+68411421 None:intergenic
GAGCAGCCTTCGAAGCAAAG+AGG 0.668609 8:-68411269 MsG0880046059.01.T01:CDS
AAGAGGTCTAACAGCTGGCG+CGG 0.668677 8:-68411252 MsG0880046059.01.T01:CDS
GGTCATGGTAGAAGTCGTGG+TGG 0.706236 8:-68408410 MsG0880046059.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTAAATAAATAAAATAAG+AGG + Chr8:68408863-68408882 None:intergenic 10.0%
!! AATAATTTAGACAAACTTAT+TGG - Chr8:68409604-68409623 MsG0880046059.01.T01:intron 15.0%
!! ACATAGTCAAAAAAAAATAT+TGG + Chr8:68409465-68409484 None:intergenic 15.0%
!! ATTAATGATTAGGTAATATT+AGG - Chr8:68409130-68409149 MsG0880046059.01.T01:intron 15.0%
!! GAAAAAAAAAAAAATTCGAA+TGG - Chr8:68410466-68410485 MsG0880046059.01.T01:intron 15.0%
!! GTAAAATTTGATAGATTATT+AGG - Chr8:68409783-68409802 MsG0880046059.01.T01:intron 15.0%
!!! AATATTTTTTTTTGACTATG+TGG - Chr8:68409464-68409483 MsG0880046059.01.T01:intron 15.0%
!!! CATTCTTTATAAATTTTAGT+TGG - Chr8:68410627-68410646 MsG0880046059.01.T01:intron 15.0%
!!! TAAATTATTTTCATGTCTTA+TGG + Chr8:68409593-68409612 None:intergenic 15.0%
!!! TTAATAAATGTACTTTGTTT+TGG + Chr8:68409423-68409442 None:intergenic 15.0%
!! AAAATCACACATTTAGAAAT+GGG + Chr8:68408895-68408914 None:intergenic 20.0%
!! ATAATAAAATTCTCTCTAGA+AGG - Chr8:68410444-68410463 MsG0880046059.01.T01:intron 20.0%
!! ATTAAATGATGTAACTACTT+TGG - Chr8:68411204-68411223 MsG0880046059.01.T01:intron 20.0%
!! ATTAGTGATTATGTGATATT+AGG - Chr8:68409090-68409109 MsG0880046059.01.T01:intron 20.0%
!! ATTTGATAGATTATTAGGTA+TGG - Chr8:68409788-68409807 MsG0880046059.01.T01:intron 20.0%
!! TGCAAGAAAAAGATTTATTA+TGG - Chr8:68408621-68408640 MsG0880046059.01.T01:CDS 20.0%
!!! AGTTTTATTGTAATTCATTC+TGG + Chr8:68410572-68410591 None:intergenic 20.0%
!!! ATTTTTTTGATGTTAACAGT+TGG - Chr8:68408247-68408266 MsG0880046059.01.T01:CDS 20.0%
!!! CACTTAGATTTTAGAAAATT+GGG + Chr8:68408921-68408940 None:intergenic 20.0%
!!! TATATTTTTGTTTTCACAAG+AGG + Chr8:68410427-68410446 None:intergenic 20.0%
!!! TCCTTTAAAACTAATTAGTT+TGG + Chr8:68410529-68410548 None:intergenic 20.0%
!!! TTGCATTTTCTTCTAAATTT+GGG + Chr8:68411438-68411457 None:intergenic 20.0%
!!! TTTGCATTTTCTTCTAAATT+TGG + Chr8:68411439-68411458 None:intergenic 20.0%
! AAAAGCTAGGAATGAAAATT+TGG - Chr8:68410291-68410310 MsG0880046059.01.T01:intron 25.0%
! ACATATAAGAGTCCTATAAA+TGG + Chr8:68409709-68409728 None:intergenic 25.0%
! ACCAAGTATTATGTATTGTT+TGG + Chr8:68409234-68409253 None:intergenic 25.0%
! ATCTAAATACAACATCCTAA+CGG + Chr8:68410000-68410019 None:intergenic 25.0%
! ATTATTAGGTATGGAAAGTT+TGG - Chr8:68409797-68409816 MsG0880046059.01.T01:intron 25.0%
! CAAAATCACACATTTAGAAA+TGG + Chr8:68408896-68408915 None:intergenic 25.0%
! CATTGAATAATTTGATGTCT+AGG - Chr8:68409875-68409894 MsG0880046059.01.T01:intron 25.0%
! GACAAATTTACATAAAAGCT+AGG - Chr8:68410278-68410297 MsG0880046059.01.T01:intron 25.0%
! TCCAAACAATACATAATACT+TGG - Chr8:68409230-68409249 MsG0880046059.01.T01:intron 25.0%
! TTTGCTCACATGTTAAATTA+AGG + Chr8:68409351-68409370 None:intergenic 25.0%
!! AAAGTTTTCTCAAGGAATAT+TGG - Chr8:68408647-68408666 MsG0880046059.01.T01:CDS 25.0%
!! AAGTGTTCAGTAAATGTTTT+CGG - Chr8:68409632-68409651 MsG0880046059.01.T01:intron 25.0%
!! AATTTGTACTTGCTAGAATA+GGG - Chr8:68408574-68408593 MsG0880046059.01.T01:intron 25.0%
!! CATTTCTAAATGTGTGATTT+TGG - Chr8:68408894-68408913 MsG0880046059.01.T01:intron 25.0%
!! CTATCAAATTTTACAAAACG+TGG + Chr8:68409777-68409796 None:intergenic 25.0%
!! TAATTTGTACTTGCTAGAAT+AGG - Chr8:68408573-68408592 MsG0880046059.01.T01:intron 25.0%
!! TTATATATTTTTCTGACCGT+AGG + Chr8:68410808-68410827 None:intergenic 25.0%
!! TTTGGATGTTTTATCCAATT+CGG + Chr8:68409405-68409424 None:intergenic 25.0%
!!! GAAATATCAAGGTTTTATCA+AGG - Chr8:68410934-68410953 MsG0880046059.01.T01:intron 25.0%
!!! GCACTTAGATTTTAGAAAAT+TGG + Chr8:68408922-68408941 None:intergenic 25.0%
!!! GCCAAACTAATTAGTTTTAA+AGG - Chr8:68410525-68410544 MsG0880046059.01.T01:intron 25.0%
!!! TACTTGGTTTTTGTTTGTTT+TGG - Chr8:68409246-68409265 MsG0880046059.01.T01:intron 25.0%
AAATATTGGAATGAACCACT+TGG + Chr8:68409451-68409470 None:intergenic 30.0%
AACAATGGTACCTTGAAATT+CGG + Chr8:68409912-68409931 None:intergenic 30.0%
AAGAACTAGTAAAGAGAATG+TGG - Chr8:68411369-68411388 MsG0880046059.01.T01:CDS 30.0%
ACTATGTGCAAGAAATATCA+AGG - Chr8:68410923-68410942 MsG0880046059.01.T01:intron 30.0%
ACTCCAATCTCAATTAGATT+AGG - Chr8:68408813-68408832 MsG0880046059.01.T01:intron 30.0%
ACTGAGAAAATTCATTCTAC+TGG + Chr8:68408703-68408722 None:intergenic 30.0%
AGACATTGAAAATTTGCAAG+CGG + Chr8:68409936-68409955 None:intergenic 30.0%
ATTAATTCACATGTGGACAA+TGG + Chr8:68409116-68409135 None:intergenic 30.0%
CCACATGTGAATTAATGATT+AGG - Chr8:68409120-68409139 MsG0880046059.01.T01:intron 30.0%
CCTAATCATTAATTCACATG+TGG + Chr8:68409123-68409142 None:intergenic 30.0%
CTAAAATCTAAGTGCTTGTT+TGG - Chr8:68408927-68408946 MsG0880046059.01.T01:intron 30.0%
GAAAATTCATTCTACTGGAT+AGG + Chr8:68408698-68408717 None:intergenic 30.0%
GCTAGTTAAGTAAAAACTTG+TGG - Chr8:68410110-68410129 MsG0880046059.01.T01:intron 30.0%
TATCACATGAACATAGTACT+AGG + Chr8:68410227-68410246 None:intergenic 30.0%
TCTCCTAATCTAATTGAGAT+TGG + Chr8:68408819-68408838 None:intergenic 30.0%
TTGAAACTTCCAAAACTACT+CGG + Chr8:68409966-68409985 None:intergenic 30.0%
! AAGTCAAAGATGCCATTTAT+AGG - Chr8:68409694-68409713 MsG0880046059.01.T01:intron 30.0%
! TATGGTACAAAGTTTTCTCA+AGG - Chr8:68408639-68408658 MsG0880046059.01.T01:CDS 30.0%
! TCATGTCTTATGGATTTTGA+AGG + Chr8:68409583-68409602 None:intergenic 30.0%
! TTGGATGTTTTATCCAATTC+GGG + Chr8:68409404-68409423 None:intergenic 30.0%
!! AGGCATTGAAACATACATAT+AGG + Chr8:68409563-68409582 None:intergenic 30.0%
!! CATTTATTAAGTTGACCAAG+TGG - Chr8:68409433-68409452 MsG0880046059.01.T01:intron 30.0%
!!! AAACTTCAGCTACTTTTAGT+TGG - Chr8:68410587-68410606 MsG0880046059.01.T01:intron 30.0%
!!! GTTTTCAAGTACTTACCAAA+AGG + Chr8:68409491-68409510 None:intergenic 30.0%
AAACTCACACTCAAGTGAAA+GGG - Chr8:68410037-68410056 MsG0880046059.01.T01:intron 35.0%
AAATTTGCAAGCGGAAACAA+TGG + Chr8:68409927-68409946 None:intergenic 35.0%
AACATCAAGTTCTTTGCACA+GGG + Chr8:68410987-68411006 None:intergenic 35.0%
AAGTGAAGATGTTAGTCCTA+CGG - Chr8:68410789-68410808 MsG0880046059.01.T01:intron 35.0%
ACAATAGTGACGTTCAACAA+TGG + Chr8:68410335-68410354 None:intergenic 35.0%
ACACACAACATAATAGAACC+TGG + Chr8:68411146-68411165 None:intergenic 35.0%
ACATACTCAACCGAATTTCA+AGG - Chr8:68409899-68409918 MsG0880046059.01.T01:intron 35.0%
ACTAATTCACATGTGGACAA+TGG + Chr8:68409156-68409175 None:intergenic 35.0%
ATCACACATTTAGAAATGGG+AGG + Chr8:68408892-68408911 None:intergenic 35.0%
CATAATCACTAATTCACACG+TGG + Chr8:68409083-68409102 None:intergenic 35.0%
CATGAAAACTGGAGAATTTG+TGG - Chr8:68411012-68411031 MsG0880046059.01.T01:intron 35.0%
CCACATGTGAATTAGTAACA+TGG - Chr8:68409160-68409179 MsG0880046059.01.T01:intron 35.0%
CCATGTTACTAATTCACATG+TGG + Chr8:68409163-68409182 None:intergenic 35.0%
CTAATTGAGATTGGAGTTGA+GGG + Chr8:68408810-68408829 None:intergenic 35.0%
GAATTAGTAACATGGTGAGT+AGG - Chr8:68409168-68409187 MsG0880046059.01.T01:intron 35.0%
GATGTTCTTAGCATGAAAAC+TGG - Chr8:68411001-68411020 MsG0880046059.01.T01:intron 35.0%
TAACACTGGCAAAGACATTT+GGG - Chr8:68410892-68410911 MsG0880046059.01.T01:intron 35.0%
TCACGATGACTCAACAATTT+CGG + Chr8:68408969-68408988 None:intergenic 35.0%
TCTAATTGAGATTGGAGTTG+AGG + Chr8:68408811-68408830 None:intergenic 35.0%
TGAACAATTCTTCGTAACAC+TGG - Chr8:68410878-68410897 MsG0880046059.01.T01:intron 35.0%
TGACCACAAACCTGAAAAAA+AGG + Chr8:68408758-68408777 None:intergenic 35.0%
TGATGCGTGGATATAAATGT+TGG - Chr8:68410690-68410709 MsG0880046059.01.T01:intron 35.0%
TGATGTAACTACTTTGGATG+TGG - Chr8:68411210-68411229 MsG0880046059.01.T01:intron 35.0%
TGGTAAGTACTTGAAAACAC+AGG - Chr8:68409493-68409512 MsG0880046059.01.T01:intron 35.0%
! CTGAAAAAAAGGCATGATGA+TGG + Chr8:68408747-68408766 None:intergenic 35.0%
! TCTGAAATTGCTAGATCTGA+TGG + Chr8:68410080-68410099 None:intergenic 35.0%
! TGCTTGTTTGGTAATACAGT+AGG - Chr8:68408939-68408958 MsG0880046059.01.T01:intron 35.0%
! TGGACAATGTCATGCATTTT+TGG + Chr8:68409025-68409044 None:intergenic 35.0%
! TGGATGTTTTATCCAATTCG+GGG + Chr8:68409403-68409422 None:intergenic 35.0%
! TGGATTGCAAAGTAGTTTGT+TGG - Chr8:68411234-68411253 MsG0880046059.01.T01:intron 35.0%
!! ATATGTGAGAGTGCTAGTTT+AGG - Chr8:68408597-68408616 MsG0880046059.01.T01:intron 35.0%
!! GGATATAAATGTTGGTGATC+TGG - Chr8:68410698-68410717 MsG0880046059.01.T01:intron 35.0%
!! TATGTGAGAGTGCTAGTTTA+GGG - Chr8:68408598-68408617 MsG0880046059.01.T01:intron 35.0%
!! TTCTGAGATCTTTAACATCC+AGG - Chr8:68411125-68411144 MsG0880046059.01.T01:intron 35.0%
!! TTTTGACTATGTGGACCTTT+TGG - Chr8:68409473-68409492 MsG0880046059.01.T01:intron 35.0%
!!! ATGCCTTTTTTTCAGGTTTG+TGG - Chr8:68408752-68408771 MsG0880046059.01.T01:CDS 35.0%
!!! CATCATCATGCCTTTTTTTC+AGG - Chr8:68408745-68408764 MsG0880046059.01.T01:CDS 35.0%
!!! GAGTAGTTTTGGAAGTTTCA+AGG - Chr8:68409965-68409984 MsG0880046059.01.T01:intron 35.0%
!!! GTCATGCATTTTTGGTATCA+CGG + Chr8:68409017-68409036 None:intergenic 35.0%
!!! TAGTTTTGGAAGTTTCAAGG+AGG - Chr8:68409968-68409987 MsG0880046059.01.T01:intron 35.0%
AAAAGATGTCCAATGCAGGA+AGG - Chr8:68411302-68411321 MsG0880046059.01.T01:CDS 40.0%
AAAGATGTCCAATGCAGGAA+GGG - Chr8:68411303-68411322 MsG0880046059.01.T01:CDS 40.0%
ACTAATTCACACGTGGACAA+TGG + Chr8:68409076-68409095 None:intergenic 40.0%
ATATGAGATCCGGTGACATT+AGG - Chr8:68409050-68409069 MsG0880046059.01.T01:intron 40.0%
CAGGTTTGTGGTCATCTATT+TGG - Chr8:68408764-68408783 MsG0880046059.01.T01:CDS 40.0%
GAAACTCACACTCAAGTGAA+AGG - Chr8:68410036-68410055 MsG0880046059.01.T01:intron 40.0%
GAACATCAAGTTCTTTGCAC+AGG + Chr8:68410988-68411007 None:intergenic 40.0%
GATCGCAATCAAATCAGTGA+AGG - Chr8:68410488-68410507 MsG0880046059.01.T01:intron 40.0%
GCACAAGACATGCTTAATGA+TGG - Chr8:68408450-68408469 MsG0880046059.01.T01:CDS 40.0%
GGTCTATTCAATAGAGACCA+CGG - Chr8:68409514-68409533 MsG0880046059.01.T01:intron 40.0%
GTAACACTGGCAAAGACATT+TGG - Chr8:68410891-68410910 MsG0880046059.01.T01:intron 40.0%
GTAACTACTTTGGATGTGGA+TGG - Chr8:68411214-68411233 MsG0880046059.01.T01:intron 40.0%
GTCCATGTGAATATGAGATC+CGG - Chr8:68409040-68409059 MsG0880046059.01.T01:intron 40.0%
GTCTATTCAATAGAGACCAC+GGG - Chr8:68409515-68409534 MsG0880046059.01.T01:intron 40.0%
TAGATCTGATGGCATTATCG+AGG + Chr8:68410069-68410088 None:intergenic 40.0%
TAGTAACATGGTGAGTAGGA+AGG - Chr8:68409172-68409191 MsG0880046059.01.T01:intron 40.0%
TCAGAATCAAAACCCCGAAT+TGG - Chr8:68409388-68409407 MsG0880046059.01.T01:intron 40.0%
TCCATGTGCAATCATCTTGT+TGG + Chr8:68411068-68411087 None:intergenic 40.0%
TGGAGAAAAACTGACTGATC+AGG - Chr8:68411084-68411103 MsG0880046059.01.T01:intron 40.0%
! CTAACACATCCGAGTAGTTT+TGG - Chr8:68409954-68409973 MsG0880046059.01.T01:intron 40.0%
! TCCTGCATTGGACATCTTTT+GGG + Chr8:68411302-68411321 None:intergenic 40.0%
! TTCCTGCATTGGACATCTTT+TGG + Chr8:68411303-68411322 None:intergenic 40.0%
AAGATGTCCAATGCAGGAAG+GGG - Chr8:68411304-68411323 MsG0880046059.01.T01:CDS 45.0%
AAGCAAAGAGGTCTAACAGC+TGG - Chr8:68408484-68408503 MsG0880046059.01.T01:CDS 45.0%
CACCGGATCTCATATTCACA+TGG + Chr8:68409045-68409064 None:intergenic 45.0%
CGCAAGTATGCATACCTGAT+TGG - Chr8:68408371-68408390 MsG0880046059.01.T01:CDS 45.0%
CTCTTAATGCAAGTTCTGCC+TGG + Chr8:68408339-68408358 None:intergenic 45.0%
GCCAACAAGATGATTGCACA+TGG - Chr8:68411064-68411083 MsG0880046059.01.T01:intron 45.0%
GTCATTCATCAAGTAGGCGA+AGG + Chr8:68408317-68408336 None:intergenic 45.0%
GTCCATGAGCAACACATGAA+AGG - Chr8:68411256-68411275 MsG0880046059.01.T01:CDS 45.0%
GTGACGTTCAACAATGGCAA+CGG + Chr8:68410329-68410348 None:intergenic 45.0%
GTTAGACCTCTTTGCTTCGA+AGG + Chr8:68408481-68408500 None:intergenic 45.0%
TAAGATAGATGACGACCTGC+TGG - Chr8:68410199-68410218 MsG0880046059.01.T01:intron 45.0%
TAGAATGCAGTTGGCCAATC+AGG + Chr8:68408388-68408407 None:intergenic 45.0%
TCCCAAAAGATGTCCAATGC+AGG - Chr8:68411298-68411317 MsG0880046059.01.T01:CDS 45.0%
TGACGTTCAACAATGGCAAC+GGG + Chr8:68410328-68410347 None:intergenic 45.0%
TGCAATCATCTTGTTGGCAG+TGG + Chr8:68411062-68411081 None:intergenic 45.0%
TGCATTAAGAGACGCAATGC+AGG - Chr8:68408348-68408367 MsG0880046059.01.T01:CDS 45.0%
TGCCTGGTCATTCATCAAGT+AGG + Chr8:68408323-68408342 None:intergenic 45.0%
TGGTGAGTAGGAAGGAGATA+AGG - Chr8:68409180-68409199 MsG0880046059.01.T01:intron 45.0%
TTTGGTCATGGTAGAAGTCG+TGG - Chr8:68411328-68411347 MsG0880046059.01.T01:CDS 45.0%
! CTAGACACGAGAGAGTGTAT+TGG + Chr8:68410658-68410677 None:intergenic 45.0%
! GACCTTTCATGTGTTGCTCA+TGG + Chr8:68411261-68411280 None:intergenic 45.0%
! GCAGTATTGAGTTTGATGCG+TGG - Chr8:68410677-68410696 MsG0880046059.01.T01:intron 45.0%
AAGCCTTGCTCTCTCAAAGC+TGG - Chr8:68408413-68408432 MsG0880046059.01.T01:CDS 50.0%
ACATAGTACTAGGCACCAGC+AGG + Chr8:68410217-68410236 None:intergenic 50.0%
ACCAAAACCCCTTCCTGCAT+TGG + Chr8:68411314-68411333 None:intergenic 50.0%
AGCCTTGCTCTCTCAAAGCT+GGG - Chr8:68408414-68408433 MsG0880046059.01.T01:CDS 50.0%
CGCCTACTTGATGAATGACC+AGG - Chr8:68408318-68408337 MsG0880046059.01.T01:CDS 50.0%
GAAGGCTCTCCTTGCAAACA+CGG + Chr8:68408299-68408318 None:intergenic 50.0%
GACGTTCAACAATGGCAACG+GGG + Chr8:68410327-68410346 None:intergenic 50.0%
GCTTGCAGGTAGAATGCAGT+TGG + Chr8:68408397-68408416 None:intergenic 50.0%
GGACAATGGCCTAATGTCAC+CGG + Chr8:68409062-68409081 None:intergenic 50.0%
TCTCCTTGCAAACACGGTTG+CGG + Chr8:68408293-68408312 None:intergenic 50.0%
TTTGAGAGAGCAAGGCTTGC+AGG + Chr8:68408411-68408430 None:intergenic 50.0%
! TCAAGGAGGCTAGTTCCGTT+AGG - Chr8:68409982-68410001 MsG0880046059.01.T01:intron 50.0%
! TCCAATGCAGGAAGGGGTTT+TGG - Chr8:68411310-68411329 MsG0880046059.01.T01:CDS 50.0%
! TGTGCACTTGTTACAACCCG+TGG + Chr8:68409534-68409553 None:intergenic 50.0%
AAGAGGTCTAACAGCTGGCG+CGG - Chr8:68408489-68408508 MsG0880046059.01.T01:CDS 55.0%
CATCCGCAACCGTGTTTGCA+AGG - Chr8:68408287-68408306 MsG0880046059.01.T01:CDS 55.0%
CTTGCAAACACGGTTGCGGA+TGG + Chr8:68408289-68408308 None:intergenic 55.0%
GAGCAGCCTTCGAAGCAAAG+AGG - Chr8:68408472-68408491 MsG0880046059.01.T01:CDS 55.0%
GCCTTGCTCTCTCAAAGCTG+GGG - Chr8:68408415-68408434 MsG0880046059.01.T01:CDS 55.0%
GGTCATGGTAGAAGTCGTGG+TGG - Chr8:68411331-68411350 MsG0880046059.01.T01:CDS 55.0%
TGCTCTCTCAAAGCTGGGGA+TGG - Chr8:68408419-68408438 MsG0880046059.01.T01:CDS 55.0%
! GTCGTGGTGGAGATCGTAGA+AGG - Chr8:68411344-68411363 MsG0880046059.01.T01:CDS 55.0%
!! GCAGGAAGGGGTTTTGGTCA+TGG - Chr8:68411316-68411335 MsG0880046059.01.T01:CDS 55.0%
!! GCGCATAGAAGTGTTCGACG+AGG - Chr8:68410829-68410848 MsG0880046059.01.T01:intron 55.0%
!! TCCCCAGCTTTGAGAGAGCA+AGG + Chr8:68408419-68408438 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 68408238 68411525 68408238 ID=MsG0880046059.01;Name=MsG0880046059.01
Chr8 mRNA 68408238 68411525 68408238 ID=MsG0880046059.01.T01;Parent=MsG0880046059.01;Name=MsG0880046059.01.T01;_AED=0.49;_eAED=0.53;_QI=0|0|0|1|1|1|3|0|256
Chr8 exon 68411244 68411525 68411244 ID=MsG0880046059.01.T01:exon:32606;Parent=MsG0880046059.01.T01
Chr8 exon 68408617 68408828 68408617 ID=MsG0880046059.01.T01:exon:32605;Parent=MsG0880046059.01.T01
Chr8 exon 68408238 68408514 68408238 ID=MsG0880046059.01.T01:exon:32604;Parent=MsG0880046059.01.T01
Chr8 CDS 68411244 68411525 68411244 ID=MsG0880046059.01.T01:cds;Parent=MsG0880046059.01.T01
Chr8 CDS 68408617 68408828 68408617 ID=MsG0880046059.01.T01:cds;Parent=MsG0880046059.01.T01
Chr8 CDS 68408238 68408514 68408238 ID=MsG0880046059.01.T01:cds;Parent=MsG0880046059.01.T01
Gene Sequence

>MsG0880046059.01.T01

ATGTTTTTAATTTTTTTGATGTTAACAGTTGGTGTTATGATGTCTGTTCCATCCGCAACCGTGTTTGCAAGGAGAGCCTTCGCCTACTTGATGAATGACCAGGCAGAACTTGCATTAAGAGACGCAATGCAGGCGCAAGTATGCATACCTGATTGGCCAACTGCATTCTACCTGCAAGCCTTGCTCTCTCAAAGCTGGGGATGGAAACTGATGCACAAGACATGCTTAATGATGGAGCAGCCTTCGAAGCAAAGAGGTCTAACAGCTGGCGCGGCTAAAATTAAATATCAAGGTTTTATCAAGGTCAAGACTCAAGAGAGCATATTGCGAGCCCTGTGCAAAGAACTTGATGTTCTTAGCATGAAAACTGGAGAATTTGTGGATGAATACTTTGCAAGAACGTTAGCCACTGCCAACAAGATGATTGCACATGGAGAAAAACTGACTGATCAGGTCATGATTGTCGAGAAGATTCTGAGATCTTTAACATCCAGTTTGTTGGTCCATGAGCAACACATGAAAGGTCATAAAGAAGAAGATCAATCCCAAAAGATGTCCAATGCAGGAAGGGGTTTTGGTCATGGTAGAAGTCGTGGTGGAGATCGTAGAAGGATAAGAACTAGTAAAGAGAATGTGGAATGTTATAAGTGTCACAAATTGAGACACTATCAATCTGAATGCCCAAATTTAGAAGAAAATGCAAATAATGCAGAATTTGATGATGAAAGAATTGCTTCTTATCTTATTGCTCAAGAAATCACTGAAACATGA
Protein sequence

>MsG0880046059.01.T01

MFLIFLMLTVGVMMSVPSATVFARRAFAYLMNDQAELALRDAMQAQVCIPDWPTAFYLQALLSQSWGWKLMHKTCLMMEQPSKQRGLTAGAAKIKYQGFIKVKTQESILRALCKELDVLSMKTGEFVDEYFARTLATANKMIAHGEKLTDQVMIVEKILRSLTSSLLVHEQHMKGHKEEDQSQKMSNAGRGFGHGRSRGGDRRRIRTSKENVECYKCHKLRHYQSECPNLEENANNAEFDDERIASYLIAQEITET*