AlfalfaGEDB | MsG0880046059.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046059.01

KEGG: -
GO: GO:0003676 GO:0008270
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046059.01.T01	GAU37486.1	48.438	192	66	5	95	256	100	288	9.81E-37	149

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046059.01.T01	Q9LS26	89.796	49	5	0	13	61	410	458	2.90E-22	98.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046059.01.T01	A0A2Z6N0G5	48.438	192	66	5	95	256	100	288	4.69e-37	149

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000139.01	MsG0880046059.01	0.835515	1.604812e-56	1.966931e-53
MsG0180000835.01	MsG0880046059.01	0.806633	7.483586e-50	4.081869e-47
MsG0180003493.01	MsG0880046059.01	0.848471	5.999930e-60	1.102440e-56
MsG0180003651.01	MsG0880046059.01	0.832656	8.345008e-56	9.388633e-53
MsG0180003920.01	MsG0880046059.01	0.807955	3.924790e-50	2.215743e-47
MsG0180005575.01	MsG0880046059.01	0.819500	1.124279e-52	8.666911e-50
MsG0180005659.01	MsG0880046059.01	0.810453	1.144131e-50	6.899186e-48
MsG0280007452.01	MsG0880046059.01	0.800808	1.211586e-48	5.694450e-46
MsG0280007787.01	MsG0880046059.01	0.820332	7.254952e-53	5.723379e-50
MsG0280009794.01	MsG0880046059.01	0.845465	3.993478e-59	6.661014e-56

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046059.01.T01	MTR_4g098740	100.000	50	0	0	12	61	300	349	1.37e-27	109
MsG0880046059.01.T01	MTR_4g098740	100.000	50	0	0	12	61	418	467	3.01e-27	109
MsG0880046059.01.T01	MTR_5g098970	56.364	55	21	1	7	61	441	492	1.59e-13	70.1
MsG0880046059.01.T01	MTR_4g020070	69.767	43	13	0	18	60	420	462	1.68e-12	67.0
MsG0880046059.01.T01	MTR_4g065003	62.000	50	19	0	18	67	421	470	4.72e-12	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046059.01.T01	AT5G46570	89.796	49	5	0	13	61	410	458	2.95e-23	98.6
MsG0880046059.01.T01	AT4G35230	56.364	55	21	1	7	61	429	480	2.62e-13	69.7
MsG0880046059.01.T01	AT1G50990	56.364	55	21	1	7	61	424	475	7.89e-13	68.2
MsG0880046059.01.T01	AT1G50990	56.364	55	21	1	7	61	429	480	8.00e-13	68.2
MsG0880046059.01.T01	AT3G54030	69.767	43	13	0	18	60	418	460	3.40e-12	66.2
MsG0880046059.01.T01	AT5G59010	67.442	43	14	0	18	60	286	328	1.45e-11	63.9
MsG0880046059.01.T01	AT5G59010	67.442	43	14	0	18	60	416	458	2.39e-11	63.5

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Find 46 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGTCCAATGCAGGA+AGG	0.579597	8:-68408439	MsG0880046059.01.T01:CDS
AAAGATGTCCAATGCAGGAA+GGG	0.538721	8:-68408438	MsG0880046059.01.T01:CDS
AACATCAAGTTCTTTGCACA+GGG	0.576936	8:+68408757	None:intergenic
AAGAACTAGTAAAGAGAATG+TGG	0.517676	8:-68408372	MsG0880046059.01.T01:CDS
AAGAGGTCTAACAGCTGGCG+CGG	0.668677	8:-68411252	MsG0880046059.01.T01:CDS
AAGATGTCCAATGCAGGAAG+GGG	0.581734	8:-68408437	MsG0880046059.01.T01:CDS
AAGCAAAGAGGTCTAACAGC+TGG	0.551791	8:-68411257	MsG0880046059.01.T01:CDS
AAGCCTTGCTCTCTCAAAGC+TGG	0.462783	8:-68411328	MsG0880046059.01.T01:CDS
ACCAAAACCCCTTCCTGCAT+TGG	0.448941	8:+68408430	None:intergenic
ACTATGTGCAAGAAATATCA+AGG	0.533973	8:-68408818	MsG0880046059.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATTGGAATGAACCACT+TGG	+	Chr8:68409451-68409470	None:intergenic	30.0%
AACAATGGTACCTTGAAATT+CGG	+	Chr8:68409912-68409931	None:intergenic	30.0%
AAGAACTAGTAAAGAGAATG+TGG	-	Chr8:68411369-68411388	MsG0880046059.01.T01:CDS	30.0%
ACTATGTGCAAGAAATATCA+AGG	-	Chr8:68410923-68410942	MsG0880046059.01.T01:intron	30.0%
ACTCCAATCTCAATTAGATT+AGG	-	Chr8:68408813-68408832	MsG0880046059.01.T01:intron	30.0%
ACTGAGAAAATTCATTCTAC+TGG	+	Chr8:68408703-68408722	None:intergenic	30.0%
AGACATTGAAAATTTGCAAG+CGG	+	Chr8:68409936-68409955	None:intergenic	30.0%
ATTAATTCACATGTGGACAA+TGG	+	Chr8:68409116-68409135	None:intergenic	30.0%
CCACATGTGAATTAATGATT+AGG	-	Chr8:68409120-68409139	MsG0880046059.01.T01:intron	30.0%
CCTAATCATTAATTCACATG+TGG	+	Chr8:68409123-68409142	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	68408238	68411525	68408238	ID=MsG0880046059.01;Name=MsG0880046059.01
Chr8	mRNA	68408238	68411525	68408238	ID=MsG0880046059.01.T01;Parent=MsG0880046059.01;Name=MsG0880046059.01.T01;_AED=0.49;_eAED=0.53;_QI=0\|0\|0\|1\|1\|1\|3\|0\|256
Chr8	exon	68411244	68411525	68411244	ID=MsG0880046059.01.T01:exon:32606;Parent=MsG0880046059.01.T01
Chr8	exon	68408617	68408828	68408617	ID=MsG0880046059.01.T01:exon:32605;Parent=MsG0880046059.01.T01
Chr8	exon	68408238	68408514	68408238	ID=MsG0880046059.01.T01:exon:32604;Parent=MsG0880046059.01.T01
Chr8	CDS	68411244	68411525	68411244	ID=MsG0880046059.01.T01:cds;Parent=MsG0880046059.01.T01
Chr8	CDS	68408617	68408828	68408617	ID=MsG0880046059.01.T01:cds;Parent=MsG0880046059.01.T01
Chr8	CDS	68408238	68408514	68408238	ID=MsG0880046059.01.T01:cds;Parent=MsG0880046059.01.T01

Gene Sequence

>MsG0880046059.01.T01

ATGTTTTTAATTTTTTTGATGTTAACAGTTGGTGTTATGATGTCTGTTCCATCCGCAACCGTGTTTGCAAGGAGAGCCTTCGCCTACTTGATGAATGACCAGGCAGAACTTGCATTAAGAGACGCAATGCAGGCGCAAGTATGCATACCTGATTGGCCAACTGCATTCTACCTGCAAGCCTTGCTCTCTCAAAGCTGGGGATGGAAACTGATGCACAAGACATGCTTAATGATGGAGCAGCCTTCGAAGCAAAGAGGTCTAACAGCTGGCGCGGCTAAAATTAAATATCAAGGTTTTATCAAGGTCAAGACTCAAGAGAGCATATTGCGAGCCCTGTGCAAAGAACTTGATGTTCTTAGCATGAAAACTGGAGAATTTGTGGATGAATACTTTGCAAGAACGTTAGCCACTGCCAACAAGATGATTGCACATGGAGAAAAACTGACTGATCAGGTCATGATTGTCGAGAAGATTCTGAGATCTTTAACATCCAGTTTGTTGGTCCATGAGCAACACATGAAAGGTCATAAAGAAGAAGATCAATCCCAAAAGATGTCCAATGCAGGAAGGGGTTTTGGTCATGGTAGAAGTCGTGGTGGAGATCGTAGAAGGATAAGAACTAGTAAAGAGAATGTGGAATGTTATAAGTGTCACAAATTGAGACACTATCAATCTGAATGCCCAAATTTAGAAGAAAATGCAAATAATGCAGAATTTGATGATGAAAGAATTGCTTCTTATCTTATTGCTCAAGAAATCACTGAAACATGA

Protein sequence

>MsG0880046059.01.T01

MFLIFLMLTVGVMMSVPSATVFARRAFAYLMNDQAELALRDAMQAQVCIPDWPTAFYLQALLSQSWGWKLMHKTCLMMEQPSKQRGLTAGAAKIKYQGFIKVKTQESILRALCKELDVLSMKTGEFVDEYFARTLATANKMIAHGEKLTDQVMIVEKILRSLTSSLLVHEQHMKGHKEEDQSQKMSNAGRGFGHGRSRGGDRRRIRTSKENVECYKCHKLRHYQSECPNLEENANNAEFDDERIASYLIAQEITET*